Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356920 | XP_013459353.1 | 97.704 | 392 | 8 | 1 | 1 | 392 | 1 | 391 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356920 | sp|P93841|ISPE_SOLLC | 75.000 | 380 | 93 | 1 | 6 | 383 | 8 | 387 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356920 | A0A072UU85 | 97.704 | 392 | 8 | 1 | 1 | 392 | 1 | 391 | 0.0 | 786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030400 | Msa0356920 | 0.816690 | 4.856382e-52 | -8.615850e-47 |
| Msa0045660 | Msa0356920 | 0.839779 | 1.291563e-57 | -8.615850e-47 |
| Msa0073350 | Msa0356920 | 0.800578 | 1.349817e-48 | -8.615850e-47 |
| Msa0121080 | Msa0356920 | 0.806770 | 6.999733e-50 | -8.615850e-47 |
| Msa0133390 | Msa0356920 | 0.803448 | 3.469568e-49 | -8.615850e-47 |
| Msa0173760 | Msa0356920 | 0.809108 | 2.227101e-50 | -8.615850e-47 |
| Msa0173850 | Msa0356920 | 0.816078 | 6.657033e-52 | -8.615850e-47 |
| Msa0266010 | Msa0356920 | 0.822346 | 2.488204e-53 | -8.615850e-47 |
| Msa0269430 | Msa0356920 | 0.802988 | 4.319400e-49 | -8.615850e-47 |
| Msa0276060 | Msa0356920 | 0.801011 | 1.101137e-48 | -8.615850e-47 |
| Msa0303950 | Msa0356920 | 0.820571 | 6.391885e-53 | -8.615850e-47 |
| Msa0356920 | Msa0373130 | 0.804745 | 1.863852e-49 | -8.615850e-47 |
| Msa0356920 | Msa0383110 | 0.800871 | 1.175985e-48 | -8.615850e-47 |
| Msa0356920 | Msa0427750 | 0.807374 | 5.216040e-50 | -8.615850e-47 |
| Msa0356920 | Msa0467710 | 0.843524 | 1.329156e-58 | -8.615850e-47 |
| Msa0356920 | Msa0521190 | 0.821111 | 4.804464e-53 | -8.615850e-47 |
| Msa0356920 | Msa0524570 | 0.803629 | 3.181766e-49 | -8.615850e-47 |
| Msa0356920 | Msa0607440 | 0.801936 | 7.115672e-49 | -8.615850e-47 |
| Msa0356920 | Msa0610300 | 0.812871 | 3.408427e-51 | -8.615850e-47 |
| Msa0356920 | Msa0622690 | 0.852741 | 3.784496e-61 | -8.615850e-47 |
| Msa0356920 | Msa0623270 | 0.805201 | 1.496525e-49 | -8.615850e-47 |
| Msa0356920 | Msa0662670 | 0.805065 | 1.597904e-49 | -8.615850e-47 |
| Msa0356920 | Msa0685880 | 0.829448 | 5.118519e-55 | -8.615850e-47 |
| Msa0356920 | Msa0708870 | 0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa0356920 | Msa0829430 | 0.807089 | 5.992981e-50 | -8.615850e-47 |
| Msa0356920 | Msa0857080 | 0.802608 | 5.175719e-49 | -8.615850e-47 |
| Msa0356920 | Msa0879820 | 0.802483 | 5.491189e-49 | -8.615850e-47 |
| Msa0356920 | Msa0968010 | 0.817651 | 2.952854e-52 | -8.615850e-47 |
| Msa0356920 | Msa1028720 | 0.816144 | 6.432336e-52 | -8.615850e-47 |
| Msa0356920 | Msa1028960 | 0.813286 | 2.764846e-51 | -8.615850e-47 |
| Msa0356920 | Msa1039860 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa0356920 | Msa1040390 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0356920 | Msa1067710 | 0.833402 | 5.445774e-56 | -8.615850e-47 |
| Msa0356920 | Msa1084210 | 0.805246 | 1.464166e-49 | -8.615850e-47 |
| Msa0356920 | Msa1128230 | 0.805108 | 1.565278e-49 | -8.615850e-47 |
| Msa0356920 | Msa1143910 | 0.852933 | 3.333830e-61 | -8.615850e-47 |
| Msa0356920 | Msa1145370 | 0.821701 | 3.509975e-53 | -8.615850e-47 |
| Msa0356920 | Msa1151970 | 0.835089 | 2.055794e-56 | -8.615850e-47 |
| Msa0356920 | Msa1183730 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0356920 | Msa1206560 | 0.810709 | 1.007433e-50 | -8.615850e-47 |
| Msa0356920 | Msa1228880 | 0.815090 | 1.104484e-51 | -8.615850e-47 |
| Msa0356920 | Msa1237750 | 0.809355 | 1.970995e-50 | -8.615850e-47 |
| Msa0356920 | Msa1303130 | 0.800384 | 1.478159e-48 | -8.615850e-47 |
| Msa0356920 | Msa1334020 | 0.803805 | 2.924956e-49 | -8.615850e-47 |
| Msa0356920 | Msa1348240 | 0.809700 | 1.662340e-50 | -8.615850e-47 |
| Msa0356920 | Msa1371840 | 0.841710 | 4.028169e-58 | -8.615850e-47 |
| Msa0356920 | Msa1388610 | 0.810290 | 1.240443e-50 | -8.615850e-47 |
| Msa0356920 | Msa1395640 | 0.832514 | 9.053565e-56 | -8.615850e-47 |
| Msa0356920 | Msa1432250 | 0.800459 | 1.426946e-48 | -8.615850e-47 |
| Msa0356920 | Msa1440980 | 0.820788 | 5.699722e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356920 | MtrunA17_Chr3g0091341 | 97.704 | 392 | 8 | 1 | 1 | 392 | 1 | 391 | 0.0 | 786 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356920 | AT2G26930.1 | 80.122 | 327 | 65 | 0 | 54 | 380 | 42 | 368 | 0.0 | 558 |
Find 129 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGATTCATTTGGATAAA+AGG | 0.121284 | 3_1:-37197894 | Msa0356920:intron |
| TTAGTTGAAGATTGTTAATT+AGG | 0.200506 | 3_1:+37200353 | None:intergenic |
| GTGAAGCTTTGAATGAAAAT+TGG | 0.228947 | 3_1:+37200203 | None:intergenic |
| GCCCCTTGATGATAGAAATT+TGG | 0.246366 | 3_1:-37198183 | Msa0356920:intron |
| TTAAGGCGCTTAATCTTTAC+AGG | 0.263692 | 3_1:-37198062 | Msa0356920:CDS |
| CGGGCACTGAAAAGTTCTTT+TGG | 0.268514 | 3_1:-37198032 | Msa0356920:CDS |
| GCAATGCTGCAACTGCATTA+TGG | 0.274231 | 3_1:-37197837 | Msa0356920:CDS |
| GCCTTGTCCACTAATGTGTC+TGG | 0.281117 | 3_1:-37198209 | Msa0356920:CDS |
| GATGTTTGCATTAATGATTT+AGG | 0.283211 | 3_1:-37196729 | Msa0356920:intron |
| TGCCTCTCTAGTGAGAAAAT+TGG | 0.299369 | 3_1:+37195405 | None:intergenic |
| GTGATTAACTTACATGAAAC+AGG | 0.300913 | 3_1:+37198815 | None:intergenic |
| CAATCTCACTTGACCATTCC+TGG | 0.306728 | 3_1:+37197770 | None:intergenic |
| TTCTTCCAGAAAACAATTAG+AGG | 0.325356 | 3_1:-37200136 | Msa0356920:intron |
| CAATGCTGCAACTGCATTAT+GGG | 0.341992 | 3_1:-37197836 | Msa0356920:CDS |
| AGCTTGTTTATCCTTTCATC+AGG | 0.346891 | 3_1:+37199043 | None:intergenic |
| TTGGTCTGAATTGAGGTAAA+TGG | 0.355433 | 3_1:+37200235 | None:intergenic |
| GAACAAAGTAAGCCTTGAAA+TGG | 0.355469 | 3_1:+37198994 | None:intergenic |
| CCCTCTTGTTGGTTATTCTC+AGG | 0.358444 | 3_1:+37198863 | None:intergenic |
| GGAAGCACAATTGTTGGAAT+TGG | 0.361037 | 3_1:-37195894 | Msa0356920:CDS |
| GGTTCTCATAAAACCTCAAC+AGG | 0.389815 | 3_1:-37196941 | Msa0356920:CDS |
| TGTATGTTCTCAGATTCATT+TGG | 0.395758 | 3_1:-37197902 | Msa0356920:intron |
| TGGAGTTCTTTCTCCGTGGC+AGG | 0.403243 | 3_1:+37197790 | None:intergenic |
| TGTCGACCCTTCAATATTGC+TGG | 0.404170 | 3_1:-37196781 | Msa0356920:CDS |
| GTTCCAACTGGGGCAGGACT+TGG | 0.404852 | 3_1:-37197871 | Msa0356920:CDS |
| CTCGCCTCGGCCAGTGCAAT+AGG | 0.404904 | 3_1:+37197711 | None:intergenic |
| GGAAGACGGGTATCATGATT+TGG | 0.405148 | 3_1:-37198842 | Msa0356920:CDS |
| CAGGAATGGTCAAGTGAGAT+TGG | 0.412432 | 3_1:-37197769 | Msa0356920:CDS |
| CCAACTGGGGCAGGACTTGG+TGG | 0.412562 | 3_1:-37197868 | Msa0356920:CDS |
| TGAAAATTGGAAGACCCATT+TGG | 0.416437 | 3_1:+37200216 | None:intergenic |
| TCAGATTCATTTGGATAAAA+GGG | 0.420419 | 3_1:-37197893 | Msa0356920:intron |
| ATACCCGTCTTCCCTCTTGT+TGG | 0.422369 | 3_1:+37198852 | None:intergenic |
| ACAAGGAGGCTCCCATTTCA+AGG | 0.435850 | 3_1:-37199006 | Msa0356920:CDS |
| TTGGATAAAAGGGTTCCAAC+TGG | 0.440000 | 3_1:-37197883 | Msa0356920:CDS |
| TGTAGAGATAAACTTTCATA+TGG | 0.442734 | 3_1:-37195280 | Msa0356920:three_prime_UTR |
| TTACCTCAATTCAGACCAAA+TGG | 0.443933 | 3_1:-37200231 | Msa0356920:CDS |
| TAAATGAATTGTGGAGGATC+AGG | 0.455794 | 3_1:+37195867 | None:intergenic |
| CCTTGTCCACTAATGTGTCT+GGG | 0.457064 | 3_1:-37198208 | Msa0356920:CDS |
| AAAAGGGTTCCAACTGGGGC+AGG | 0.461526 | 3_1:-37197877 | Msa0356920:CDS |
| AATAATTGGTTTACCTTGCA+CGG | 0.465784 | 3_1:+37198968 | None:intergenic |
| TTACCAAATTTCTATCATCA+AGG | 0.466355 | 3_1:+37198180 | None:intergenic |
| TGCAGCGGAAGCACAATTGT+TGG | 0.467813 | 3_1:-37195900 | Msa0356920:intron |
| TATGATGCTGTCTTTATGTC+AGG | 0.470938 | 3_1:-37196297 | Msa0356920:CDS |
| AAATATTTCTAAATAGAAAG+AGG | 0.476790 | 3_1:+37195179 | None:intergenic |
| GTTTCAGTCGTTTGAGAGAA+GGG | 0.480550 | 3_1:+37196349 | None:intergenic |
| GACCCATTTGGTCTGAATTG+AGG | 0.481688 | 3_1:+37200228 | None:intergenic |
| TTCTAATGATACAGCGTCTA+CGG | 0.482139 | 3_1:-37196821 | Msa0356920:intron |
| ATTAGTGGACAAGGCATCCT+TGG | 0.484452 | 3_1:+37198217 | None:intergenic |
| CGAATTACAGCAGCTGGTCG+TGG | 0.485929 | 3_1:-37196324 | Msa0356920:CDS |
| ATCCTCTCCAGCAATATTGA+AGG | 0.488811 | 3_1:+37196774 | None:intergenic |
| TACCGAGACGTATTCTTGTC+AGG | 0.495195 | 3_1:-37195831 | Msa0356920:intron |
| TGAGAGTAGTTATTTATCCA+TGG | 0.496727 | 3_1:-37200313 | Msa0356920:exon |
| TACTTTGTTCTCTCCGTGCA+AGG | 0.497980 | 3_1:-37198981 | Msa0356920:intron |
| TGGATAAAAGGGTTCCAACT+GGG | 0.499633 | 3_1:-37197882 | Msa0356920:CDS |
| GCAGCCTATTGCACTGGCCG+AGG | 0.503085 | 3_1:-37197715 | Msa0356920:CDS |
| TGCCACGGAGAAAGAACTCC+AGG | 0.503166 | 3_1:-37197788 | Msa0356920:CDS |
| AATGATACAGCGTCTACGGC+TGG | 0.507265 | 3_1:-37196817 | Msa0356920:intron |
| TACCAAATTTCTATCATCAA+GGG | 0.510983 | 3_1:+37198181 | None:intergenic |
| GTTATCATTTGCAGAACCTC+CGG | 0.511513 | 3_1:-37196385 | Msa0356920:intron |
| TGTTTCAGTCGTTTGAGAGA+AGG | 0.518235 | 3_1:+37196348 | None:intergenic |
| AACAAAGTAAGCCTTGAAAT+GGG | 0.519272 | 3_1:+37198995 | None:intergenic |
| ACTGGGGCAGGACTTGGTGG+TGG | 0.520149 | 3_1:-37197865 | Msa0356920:CDS |
| ATGGATGGTTCTTCTGAAAG+TGG | 0.529200 | 3_1:+37200254 | None:intergenic |
| AACGGTGCAGCCTATTGCAC+TGG | 0.530979 | 3_1:-37197721 | Msa0356920:CDS |
| TGGATGGTTCTTCTGAAAGT+GGG | 0.532145 | 3_1:+37200255 | None:intergenic |
| AAACAGCGAATTACAGCAGC+TGG | 0.534386 | 3_1:-37196330 | Msa0356920:CDS |
| ATGGTGGAGCTTTGCCGCAA+CGG | 0.534655 | 3_1:-37195112 | Msa0356920:three_prime_UTR |
| GGGCACCCCAGACACATTAG+TGG | 0.535033 | 3_1:+37198202 | None:intergenic |
| GATTCAGAAATAAATGACTC+AGG | 0.535565 | 3_1:+37195346 | None:intergenic |
| TACCTCAATTCAGACCAAAT+GGG | 0.535582 | 3_1:-37200230 | Msa0356920:CDS |
| AAGGTGACAAAGAGAACTTA+AGG | 0.545135 | 3_1:+37198246 | None:intergenic |
| TTGCTGGAGAGGATTTCAAC+GGG | 0.546693 | 3_1:-37196765 | Msa0356920:CDS |
| TTCTGAAAGTGGGGATAGAG+TGG | 0.551464 | 3_1:+37200265 | None:intergenic |
| GAATATCCGAAGATACTAGC+GGG | 0.551637 | 3_1:+37196968 | None:intergenic |
| GGCTGTAAAGTTATTGTCAC+AGG | 0.554053 | 3_1:-37195091 | None:intergenic |
| CCACCAAGTCCTGCCCCAGT+TGG | 0.554625 | 3_1:+37197868 | None:intergenic |
| ATTCAGAAATAAATGACTCA+GGG | 0.557788 | 3_1:+37195347 | None:intergenic |
| AACCATAAGGTGATAAGTCT+AGG | 0.558994 | 3_1:-37198275 | Msa0356920:intron |
| TCATCATCGTAAATGAATTG+TGG | 0.563101 | 3_1:+37195858 | None:intergenic |
| ACCCTTCAATATTGCTGGAG+AGG | 0.564664 | 3_1:-37196776 | Msa0356920:CDS |
| GAAATAAATGACTCAGGGGT+AGG | 0.565474 | 3_1:+37195352 | None:intergenic |
| TAATCTTTACAGGAAGAAGA+CGG | 0.565856 | 3_1:-37198052 | Msa0356920:CDS |
| CAATAACTTTACAGCCGTTG+CGG | 0.568598 | 3_1:+37195098 | None:intergenic |
| ATAACCAACAAGAGGGAAGA+CGG | 0.568717 | 3_1:-37198856 | Msa0356920:CDS |
| TCTTGTATATGATTATAAGA+TGG | 0.571073 | 3_1:-37195309 | Msa0356920:three_prime_UTR |
| TTCAACTGCAGAAGTCTACA+AGG | 0.572084 | 3_1:-37196914 | Msa0356920:intron |
| GCTTGTTTATCCTTTCATCA+GGG | 0.572094 | 3_1:+37199044 | None:intergenic |
| TCTGGAAGAATCAGAAACCA+TGG | 0.575316 | 3_1:+37200149 | None:intergenic |
| CCCAGACACATTAGTGGACA+AGG | 0.576073 | 3_1:+37198208 | None:intergenic |
| GTTCAGTGGTTGTCCTGCCA+CGG | 0.586464 | 3_1:-37197803 | Msa0356920:CDS |
| TAACCAACAAGAGGGAAGAC+GGG | 0.586466 | 3_1:-37198855 | Msa0356920:CDS |
| ACAATTCATTTACGATGATG+AGG | 0.587793 | 3_1:-37195856 | Msa0356920:CDS |
| GTTTGTCAAAGTCAAAGCCA+TGG | 0.589156 | 3_1:-37200166 | Msa0356920:CDS |
| CGGAGAAAGAACTCCAGGAA+TGG | 0.589868 | 3_1:-37197783 | Msa0356920:CDS |
| ACCAAATTTCTATCATCAAG+GGG | 0.591274 | 3_1:+37198182 | None:intergenic |
| TCCTGAGAATAACCAACAAG+AGG | 0.592621 | 3_1:-37198864 | Msa0356920:CDS |
| AGTATCTTCGGATATTCCAA+TGG | 0.593726 | 3_1:-37196962 | Msa0356920:CDS |
| GGATAAAAGGGTTCCAACTG+GGG | 0.594768 | 3_1:-37197881 | Msa0356920:CDS |
| CCTGAGAATAACCAACAAGA+GGG | 0.595343 | 3_1:-37198863 | Msa0356920:CDS |
| AATCTTTACAGGAAGAAGAC+GGG | 0.596753 | 3_1:-37198051 | Msa0356920:CDS |
| GCTTTGACTTTGACAAACTG+AGG | 0.596833 | 3_1:+37200171 | None:intergenic |
| CTATTGCACTGGCCGAGGCG+AGG | 0.599537 | 3_1:-37197710 | Msa0356920:intron |
| AAGAAACTGAGAAGAAGCCA+TGG | 0.611350 | 3_1:+37200296 | None:intergenic |
| GCAGTTGAACAAGCCTGTTG+AGG | 0.611379 | 3_1:+37196928 | None:intergenic |
| CTTGTCCACTAATGTGTCTG+GGG | 0.613317 | 3_1:-37198207 | Msa0356920:CDS |
| ATTGCTGGAGAGGATTTCAA+CGG | 0.619536 | 3_1:-37196766 | Msa0356920:CDS |
| TCCTCTCCAGCAATATTGAA+GGG | 0.622612 | 3_1:+37196775 | None:intergenic |
| TCAGGGGTAGGAGTTGAAGC+AGG | 0.623574 | 3_1:+37195364 | None:intergenic |
| AAGGCATCCTTGGTATTCGA+AGG | 0.624720 | 3_1:+37198227 | None:intergenic |
| TTTGTCACCTTCGAATACCA+AGG | 0.625046 | 3_1:-37198234 | Msa0356920:CDS |
| ATGCTGTCTTTATGTCAGGA+AGG | 0.626781 | 3_1:-37196293 | Msa0356920:intron |
| GAAGGGAGAACTTCAAACGC+CGG | 0.627869 | 3_1:+37196366 | None:intergenic |
| TATTTGGACTCACCTCGCCT+CGG | 0.632685 | 3_1:+37197698 | None:intergenic |
| TGGGCAGCAAATCAGTTCAG+TGG | 0.635251 | 3_1:-37197817 | Msa0356920:CDS |
| TTCCTGGAGTTCTTTCTCCG+TGG | 0.642458 | 3_1:+37197786 | None:intergenic |
| GGATGGTTCTTCTGAAAGTG+GGG | 0.644147 | 3_1:+37200256 | None:intergenic |
| TCATCGTAAATGAATTGTGG+AGG | 0.645589 | 3_1:+37195861 | None:intergenic |
| GACCTGACAAGAATACGTCT+CGG | 0.646538 | 3_1:+37195829 | None:intergenic |
| TTGTGTATGACCCTGATGAA+AGG | 0.653956 | 3_1:-37199054 | Msa0356920:CDS |
| TGATTAACTTACATGAAACA+GGG | 0.656638 | 3_1:+37198816 | None:intergenic |
| CTGGAGAGGATTTCAACGGG+TGG | 0.659780 | 3_1:-37196762 | Msa0356920:CDS |
| AGCTGATCAAATTGACAAGG+AGG | 0.670021 | 3_1:-37199020 | Msa0356920:CDS |
| TTCAGAAATAAATGACTCAG+GGG | 0.679197 | 3_1:+37195348 | None:intergenic |
| TCACTAGAGAGGCAAATGAG+TGG | 0.688683 | 3_1:-37195396 | Msa0356920:CDS |
| GGAATATCCGAAGATACTAG+CGG | 0.697348 | 3_1:+37196967 | None:intergenic |
| GCTAGCTGATCAAATTGACA+AGG | 0.699538 | 3_1:-37199023 | Msa0356920:CDS |
| AATATCCGAAGATACTAGCG+GGG | 0.703814 | 3_1:+37196969 | None:intergenic |
| GGGAGAACTTCAAACGCCGG+AGG | 0.707690 | 3_1:+37196369 | None:intergenic |
| TCTGAATTGAGGTAAATGGA+TGG | 0.708929 | 3_1:+37200239 | None:intergenic |
| ATATCCGAAGATACTAGCGG+GGG | 0.775643 | 3_1:+37196970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCCTTAATTTTTTTTTT+AGG | - | chr3_1:37198264-37198283 | Msa0356920:CDS | 10.0% |
| !! | TTTACCTAAAAAAAAAATTA+AGG | + | chr3_1:37198271-37198290 | None:intergenic | 10.0% |
| !!! | ATAATTTCCTTTTATAAAAT+TGG | - | chr3_1:37199824-37199843 | Msa0356920:intron | 10.0% |
| !!! | TAATTTCCTTTTATAAAATT+GGG | - | chr3_1:37199825-37199844 | Msa0356920:intron | 10.0% |
| !! | AATGTGAAGTTATTTATATT+TGG | - | chr3_1:37195750-37195769 | Msa0356920:intron | 15.0% |
| !!! | TAATCAATTTTACATATGTT+TGG | - | chr3_1:37195893-37195912 | Msa0356920:CDS | 15.0% |
| !!! | AATATACCAAAATTACTTTT+TGG | + | chr3_1:37196199-37196218 | None:intergenic | 15.0% |
| !!! | AAAGTAATTTTGGTATATTT+TGG | - | chr3_1:37196200-37196219 | Msa0356920:intron | 15.0% |
| !!! | AAGTAATTTTGGTATATTTT+GGG | - | chr3_1:37196201-37196220 | Msa0356920:intron | 15.0% |
| !! | GCTTAAATATTTAATTATGA+AGG | - | chr3_1:37198315-37198334 | Msa0356920:intron | 15.0% |
| !! | ACAAGATATTGAAAAATATT+AGG | + | chr3_1:37199277-37199296 | None:intergenic | 15.0% |
| !! | AAAATGAACTAAAAAATATG+CGG | + | chr3_1:37200282-37200301 | None:intergenic | 15.0% |
| !!! | AAATATTTCTAAATAGAAAG+AGG | + | chr3_1:37200349-37200368 | None:intergenic | 15.0% |
| !! | AAAAAGAAAGAAAAACATTA+TGG | - | chr3_1:37200394-37200413 | Msa0356920:five_prime_UTR | 15.0% |
| !! | TTAGTTGAAGATTGTTAATT+AGG | + | chr3_1:37195175-37195194 | None:intergenic | 20.0% |
| !! | ATTAATTCAAACTATAGCTT+CGG | + | chr3_1:37195843-37195862 | None:intergenic | 20.0% |
| !!! | AGTAATTTTGGTATATTTTG+GGG | - | chr3_1:37196202-37196221 | Msa0356920:intron | 20.0% |
| !! | TAACTTAGAATCAATTCTAT+AGG | + | chr3_1:37196233-37196252 | None:intergenic | 20.0% |
| !!! | TACTTTACATTTTCTTTTTG+AGG | - | chr3_1:37197134-37197153 | Msa0356920:intron | 20.0% |
| !!! | ACTTTACATTTTCTTTTTGA+GGG | - | chr3_1:37197135-37197154 | Msa0356920:intron | 20.0% |
| !! | TTAGTCCAATAAAAAATTTG+TGG | + | chr3_1:37197175-37197194 | None:intergenic | 20.0% |
| !! | ATATTACCTTATTAAATGTC+CGG | + | chr3_1:37197413-37197432 | None:intergenic | 20.0% |
| !!! | TCTCTTTTTACAGATTATTA+AGG | - | chr3_1:37197446-37197465 | Msa0356920:intron | 20.0% |
| !! | AATCATATAGTATTATCCAT+TGG | + | chr3_1:37197963-37197982 | None:intergenic | 20.0% |
| !! | TTGAAGCTTAAAATAAATCA+CGG | + | chr3_1:37198100-37198119 | None:intergenic | 20.0% |
| !! | TTCTTGTACTAGATTATTAA+AGG | + | chr3_1:37198201-37198220 | None:intergenic | 20.0% |
| !!! | TAGATATATTCATTTTGTCT+TGG | + | chr3_1:37198377-37198396 | None:intergenic | 20.0% |
| !! | ACATAAGATGATAAACTTTA+GGG | + | chr3_1:37199584-37199603 | None:intergenic | 20.0% |
| !! | TACATAAGATGATAAACTTT+AGG | + | chr3_1:37199585-37199604 | None:intergenic | 20.0% |
| !!! | TCAATTCCCAATTTTATAAA+AGG | + | chr3_1:37199834-37199853 | None:intergenic | 20.0% |
| !! | ACTTCAGTAAAAAAAAGAAA+AGG | + | chr3_1:37199938-37199957 | None:intergenic | 20.0% |
| !! | TCTTGTATATGATTATAAGA+TGG | - | chr3_1:37200216-37200235 | Msa0356920:CDS | 20.0% |
| ! | TAGCATTTGTTTAACTGAAT+TGG | - | chr3_1:37195477-37195496 | Msa0356920:intron | 25.0% |
| ! | TTTGTTTAACTGAATTGGTT+AGG | - | chr3_1:37195482-37195501 | Msa0356920:intron | 25.0% |
| !! | CTTAGAATCAAATTTTCTCA+CGG | + | chr3_1:37195688-37195707 | None:intergenic | 25.0% |
| !!! | ACATATGTTTGGTTTTAGAT+AGG | - | chr3_1:37195904-37195923 | Msa0356920:intron | 25.0% |
| ! | TGTAAACAATCAAACATGTT+AGG | + | chr3_1:37195961-37195980 | None:intergenic | 25.0% |
| ! | AACGTAAAATGATTTATGCT+CGG | + | chr3_1:37196318-37196337 | None:intergenic | 25.0% |
| !! | AAACCAATTATTCTTTTGCT+TGG | - | chr3_1:37196568-37196587 | Msa0356920:intron | 25.0% |
| !! | AACCAATTATTCTTTTGCTT+GGG | - | chr3_1:37196569-37196588 | Msa0356920:intron | 25.0% |
| ! | TGATTAACTTACATGAAACA+GGG | + | chr3_1:37196712-37196731 | None:intergenic | 25.0% |
| ! | CATGTAAGTTAATCACAATT+TGG | - | chr3_1:37196717-37196736 | Msa0356920:intron | 25.0% |
| ! | TCACAATTTGGTAAATTCTT+CGG | - | chr3_1:37196729-37196748 | Msa0356920:intron | 25.0% |
| ! | AGTCATCAAAATTACAAATC+AGG | - | chr3_1:37196819-37196838 | Msa0356920:intron | 25.0% |
| ! | AAATGTAAAGTAGTGACTAA+TGG | + | chr3_1:37197126-37197145 | None:intergenic | 25.0% |
| ! | TACCAAATTTCTATCATCAA+GGG | + | chr3_1:37197347-37197366 | None:intergenic | 25.0% |
| ! | TTACCAAATTTCTATCATCA+AGG | + | chr3_1:37197348-37197367 | None:intergenic | 25.0% |
| ! | AAGTGCATCTTTATATTACT+TGG | - | chr3_1:37197569-37197588 | Msa0356920:intron | 25.0% |
| ! | TCAGATTCATTTGGATAAAA+GGG | - | chr3_1:37197632-37197651 | Msa0356920:intron | 25.0% |
| ! | CTATCCATGATAAAAATTCT+GGG | + | chr3_1:37198231-37198250 | None:intergenic | 25.0% |
| !! | AATTTTTATCATGGATAGGA+AGG | - | chr3_1:37198233-37198252 | Msa0356920:CDS | 25.0% |
| !! | ATTTTTATCATGGATAGGAA+GGG | - | chr3_1:37198234-37198253 | Msa0356920:CDS | 25.0% |
| !!! | TTTTGTGACTTTAAAGAATG+TGG | + | chr3_1:37198676-37198695 | None:intergenic | 25.0% |
| ! | GATGTTTGCATTAATGATTT+AGG | - | chr3_1:37198796-37198815 | Msa0356920:intron | 25.0% |
| !!! | CTTTATTTTTTCACTTTCAC+TGG | - | chr3_1:37198853-37198872 | Msa0356920:CDS | 25.0% |
| !!! | ATTGATTTGAAAGATGTGAA+GGG | + | chr3_1:37199017-37199036 | None:intergenic | 25.0% |
| ! | AAGTTAACAATGTCAATGAT+AGG | + | chr3_1:37199044-37199063 | None:intergenic | 25.0% |
| ! | GAATTAGAACTACGATATAA+AGG | + | chr3_1:37199409-37199428 | None:intergenic | 25.0% |
| ! | TAATATTTACTTTGCTCTCA+TGG | - | chr3_1:37199533-37199552 | Msa0356920:intron | 25.0% |
| ! | CATAAGATGATAAACTTTAG+GGG | + | chr3_1:37199583-37199602 | None:intergenic | 25.0% |
| ! | TCTGCAATTGGAAATATTAA+AGG | + | chr3_1:37200098-37200117 | None:intergenic | 25.0% |
| ! | ATTCAGAAATAAATGACTCA+GGG | + | chr3_1:37200181-37200200 | None:intergenic | 25.0% |
| ! | TGTAGAGATAAACTTTCATA+TGG | - | chr3_1:37200245-37200264 | Msa0356920:CDS | 25.0% |
| ! | AAGAAAGAAAAACATTATGG+TGG | - | chr3_1:37200397-37200416 | Msa0356920:five_prime_UTR | 25.0% |
| ATTAGGTGTGTATGAAAAAG+TGG | + | chr3_1:37195158-37195177 | None:intergenic | 30.0% | |
| TGAGAGTAGTTATTTATCCA+TGG | - | chr3_1:37195212-37195231 | Msa0356920:three_prime_UTR | 30.0% | |
| !! | GTGAAGCTTTGAATGAAAAT+TGG | + | chr3_1:37195325-37195344 | None:intergenic | 30.0% |
| TTCTTCCAGAAAACAATTAG+AGG | - | chr3_1:37195389-37195408 | Msa0356920:CDS | 30.0% | |
| ! | ACAAACCTCTAATTGTTTTC+TGG | + | chr3_1:37195397-37195416 | None:intergenic | 30.0% |
| TTCAAAACATAAGAAACGAC+AGG | + | chr3_1:37195436-37195455 | None:intergenic | 30.0% | |
| ATTCAGTGTAATTGTATGTG+TGG | + | chr3_1:37195569-37195588 | None:intergenic | 30.0% | |
| ATGAAGCATGAATACAAACA+CGG | + | chr3_1:37195645-37195664 | None:intergenic | 30.0% | |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | chr3_1:37195930-37195949 | None:intergenic | 30.0% |
| TGATTGTGAGTGAATTGATT+CGG | + | chr3_1:37196142-37196161 | None:intergenic | 30.0% | |
| TCTCCTTTAAATTCACTTCT+GGG | - | chr3_1:37196169-37196188 | Msa0356920:intron | 30.0% | |
| ! | TTTTCTTCGTAATTGTGTGT+TGG | - | chr3_1:37196438-37196457 | Msa0356920:intron | 30.0% |
| AACAAAGTAAGCCTTGAAAT+GGG | + | chr3_1:37196533-37196552 | None:intergenic | 30.0% | |
| ! | AATAATTGGTTTACCTTGCA+CGG | + | chr3_1:37196560-37196579 | None:intergenic | 30.0% |
| GTGATTAACTTACATGAAAC+AGG | + | chr3_1:37196713-37196732 | None:intergenic | 30.0% | |
| !! | ATCTGTCTACTTTTCTCTAA+GGG | + | chr3_1:37196799-37196818 | None:intergenic | 30.0% |
| !! | TATCTGTCTACTTTTCTCTA+AGG | + | chr3_1:37196800-37196819 | None:intergenic | 30.0% |
| ACCAAAAATTTAAACACCGA+AGG | + | chr3_1:37196872-37196891 | None:intergenic | 30.0% | |
| !!! | CGGTGTTTAAATTTTTGGTA+CGG | - | chr3_1:37196873-37196892 | Msa0356920:intron | 30.0% |
| !!! | GCGTTCCACAAATTTTTTAT+TGG | - | chr3_1:37197167-37197186 | Msa0356920:intron | 30.0% |
| ACCAAATTTCTATCATCAAG+GGG | + | chr3_1:37197346-37197365 | None:intergenic | 30.0% | |
| ! | TTTTCGACATTATCTTCTAC+CGG | - | chr3_1:37197391-37197410 | Msa0356920:intron | 30.0% |
| TAATCTTTACAGGAAGAAGA+CGG | - | chr3_1:37197473-37197492 | Msa0356920:intron | 30.0% | |
| TGTATGTTCTCAGATTCATT+TGG | - | chr3_1:37197623-37197642 | Msa0356920:intron | 30.0% | |
| CTCAGATTCATTTGGATAAA+AGG | - | chr3_1:37197631-37197650 | Msa0356920:intron | 30.0% | |
| AATCTGATTTCAAGAAAGGA+TGG | + | chr3_1:37197860-37197879 | None:intergenic | 30.0% | |
| CATATAGTATTATCCATTGG+AGG | + | chr3_1:37197960-37197979 | None:intergenic | 30.0% | |
| GATTATTCTGATCTGTACAA+TGG | - | chr3_1:37197979-37197998 | Msa0356920:intron | 30.0% | |
| ATAAATCTATTCGATCAGAG+TGG | + | chr3_1:37198053-37198072 | None:intergenic | 30.0% | |
| ACTCTGATCGAATAGATTTA+TGG | - | chr3_1:37198052-37198071 | Msa0356920:CDS | 30.0% | |
| ! | GTAGATTTTGTGAAAATCAG+TGG | - | chr3_1:37198123-37198142 | Msa0356920:intron | 30.0% |
| CCTATCCATGATAAAAATTC+TGG | + | chr3_1:37198232-37198251 | None:intergenic | 30.0% | |
| ! | CCAGAATTTTTATCATGGAT+AGG | - | chr3_1:37198229-37198248 | Msa0356920:CDS | 30.0% |
| TAAGTTGTTTAACCTAATGC+AGG | - | chr3_1:37198445-37198464 | Msa0356920:intron | 30.0% | |
| ! | TACAAGGTATCTGAATTTCA+AGG | - | chr3_1:37198627-37198646 | Msa0356920:intron | 30.0% |
| ! | TTGATTTGAAAGATGTGAAG+GGG | + | chr3_1:37199016-37199035 | None:intergenic | 30.0% |
| !! | GATTGATTTGAAAGATGTGA+AGG | + | chr3_1:37199018-37199037 | None:intergenic | 30.0% |
| AACTCCAGTATTCAAAGAAT+GGG | + | chr3_1:37199311-37199330 | None:intergenic | 30.0% | |
| TAACTCCAGTATTCAAAGAA+TGG | + | chr3_1:37199312-37199331 | None:intergenic | 30.0% | |
| !! | CGTAGTTCTAATTCTGTTAA+AGG | - | chr3_1:37199415-37199434 | Msa0356920:intron | 30.0% |
| ACGAAGATTAAGTTTACTGA+AGG | - | chr3_1:37199449-37199468 | Msa0356920:intron | 30.0% | |
| AGTAAATATTAAACGACGCT+CGG | + | chr3_1:37199524-37199543 | None:intergenic | 30.0% | |
| TCATCATCGTAAATGAATTG+TGG | + | chr3_1:37199670-37199689 | None:intergenic | 30.0% | |
| ACAATTCATTTACGATGATG+AGG | - | chr3_1:37199669-37199688 | Msa0356920:intron | 30.0% | |
| ! | CTGAAGTTAGTTACTTTACA+TGG | - | chr3_1:37199951-37199970 | Msa0356920:intron | 30.0% |
| TTCAGAAATAAATGACTCAG+GGG | + | chr3_1:37200180-37200199 | None:intergenic | 30.0% | |
| GATTCAGAAATAAATGACTC+AGG | + | chr3_1:37200182-37200201 | None:intergenic | 30.0% | |
| GTGTATGAAAAAGTGGTATG+AGG | + | chr3_1:37195151-37195170 | None:intergenic | 35.0% | |
| TCTGAATTGAGGTAAATGGA+TGG | + | chr3_1:37195289-37195308 | None:intergenic | 35.0% | |
| TTGGTCTGAATTGAGGTAAA+TGG | + | chr3_1:37195293-37195312 | None:intergenic | 35.0% | |
| TTACCTCAATTCAGACCAAA+TGG | - | chr3_1:37195294-37195313 | Msa0356920:three_prime_UTR | 35.0% | |
| TACCTCAATTCAGACCAAAT+GGG | - | chr3_1:37195295-37195314 | Msa0356920:three_prime_UTR | 35.0% | |
| TGAAAATTGGAAGACCCATT+TGG | + | chr3_1:37195312-37195331 | None:intergenic | 35.0% | |
| GTAATTGTATGTGTGGATGT+CGG | + | chr3_1:37195562-37195581 | None:intergenic | 35.0% | |
| TTCATGCTTCATAGTTAGTG+TGG | - | chr3_1:37195653-37195672 | Msa0356920:intron | 35.0% | |
| !! | ATAGCTTCGGATTCTAGAAT+TGG | + | chr3_1:37195830-37195849 | None:intergenic | 35.0% |
| ! | TAGGCCAAAATTGATTCTAG+AGG | - | chr3_1:37195923-37195942 | Msa0356920:intron | 35.0% |
| GTCTCCTTTAAATTCACTTC+TGG | - | chr3_1:37196168-37196187 | Msa0356920:intron | 35.0% | |
| TCTCCCAGAAGTGAATTTAA+AGG | + | chr3_1:37196175-37196194 | None:intergenic | 35.0% | |
| ! | GGAGAGCCAAAAAGTAATTT+TGG | - | chr3_1:37196190-37196209 | Msa0356920:intron | 35.0% |
| GCTTGTTTATCCTTTCATCA+GGG | + | chr3_1:37196484-37196503 | None:intergenic | 35.0% | |
| ! | AGCTTGTTTATCCTTTCATC+AGG | + | chr3_1:37196485-37196504 | None:intergenic | 35.0% |
| GAACAAAGTAAGCCTTGAAA+TGG | + | chr3_1:37196534-37196553 | None:intergenic | 35.0% | |
| CTCCCAAGCAAAAGAATAAT+TGG | + | chr3_1:37196574-37196593 | None:intergenic | 35.0% | |
| !!! | GCCTTCGGTGTTTAAATTTT+TGG | - | chr3_1:37196868-37196887 | Msa0356920:intron | 35.0% |
| !! | TTGTTTCTGCTATGCAATTG+CGG | + | chr3_1:37196955-37196974 | None:intergenic | 35.0% |
| TCTTCTACCGAATAGAAATG+CGG | + | chr3_1:37197078-37197097 | None:intergenic | 35.0% | |
| ! | CTCATCTTTTCTGAACCATA+AGG | - | chr3_1:37197237-37197256 | Msa0356920:intron | 35.0% |
| AACCATAAGGTGATAAGTCT+AGG | - | chr3_1:37197250-37197269 | Msa0356920:intron | 35.0% | |
| AAGGTGACAAAGAGAACTTA+AGG | + | chr3_1:37197282-37197301 | None:intergenic | 35.0% | |
| CTTCTACCGGACATTTAATA+AGG | - | chr3_1:37197404-37197423 | Msa0356920:intron | 35.0% | |
| ! | TTAAGGCGCTTAATCTTTAC+AGG | - | chr3_1:37197463-37197482 | Msa0356920:intron | 35.0% |
| AATCTTTACAGGAAGAAGAC+GGG | - | chr3_1:37197474-37197493 | Msa0356920:intron | 35.0% | |
| ! | GTTCCCTTCTTTTTCTCTAA+CGG | - | chr3_1:37197786-37197805 | Msa0356920:CDS | 35.0% |
| AAAGGATGGTACCTAGTATT+TGG | + | chr3_1:37197846-37197865 | None:intergenic | 35.0% | |
| CTGCAATCTGATTTCAAGAA+AGG | + | chr3_1:37197864-37197883 | None:intergenic | 35.0% | |
| CTTTCTTGAAATCAGATTGC+AGG | - | chr3_1:37197862-37197881 | Msa0356920:CDS | 35.0% | |
| ACTAGACCAAAGATCAATCT+CGG | + | chr3_1:37198176-37198195 | None:intergenic | 35.0% | |
| ! | GACACCCAGAATTTTTATCA+TGG | - | chr3_1:37198224-37198243 | Msa0356920:CDS | 35.0% |
| !! | GAAGGTATTCATCTACGAAT+CGG | - | chr3_1:37198333-37198352 | Msa0356920:intron | 35.0% |
| ! | AAGGTATTCATCTACGAATC+GGG | - | chr3_1:37198334-37198353 | Msa0356920:intron | 35.0% |
| AGTATCTTCGGATATTCCAA+TGG | - | chr3_1:37198563-37198582 | Msa0356920:intron | 35.0% | |
| !! | TGAGGTTTTATGAGAACCAT+TGG | + | chr3_1:37198582-37198601 | None:intergenic | 35.0% |
| TTCTAATGATACAGCGTCTA+CGG | - | chr3_1:37198704-37198723 | Msa0356920:intron | 35.0% | |
| ATTGCATGTGCTACATATCA+TGG | - | chr3_1:37198977-37198996 | Msa0356920:intron | 35.0% | |
| ! | GTTCTGCAAATGATAACGAA+GGG | + | chr3_1:37199137-37199156 | None:intergenic | 35.0% |
| TATGATGCTGTCTTTATGTC+AGG | - | chr3_1:37199228-37199247 | Msa0356920:intron | 35.0% | |
| TTTCCCCATTCTTTGAATAC+TGG | - | chr3_1:37199304-37199323 | Msa0356920:intron | 35.0% | |
| ACTCCAGTATTCAAAGAATG+GGG | + | chr3_1:37199310-37199329 | None:intergenic | 35.0% | |
| GAGATGAAATTTACCAGTAG+CGG | - | chr3_1:37199341-37199360 | Msa0356920:intron | 35.0% | |
| ! | ATTTCTAGAAAATCCGCTAC+TGG | + | chr3_1:37199357-37199376 | None:intergenic | 35.0% |
| TCTTAACATGTATCATGCAG+CGG | - | chr3_1:37199610-37199629 | Msa0356920:intron | 35.0% | |
| TAAATGAATTGTGGAGGATC+AGG | + | chr3_1:37199661-37199680 | None:intergenic | 35.0% | |
| TCATCGTAAATGAATTGTGG+AGG | + | chr3_1:37199667-37199686 | None:intergenic | 35.0% | |
| GTGAGATATGTACTGAGATT+AGG | + | chr3_1:37199769-37199788 | None:intergenic | 35.0% | |
| TCTGATAGAGATCACATAGT+TGG | - | chr3_1:37199895-37199914 | Msa0356920:intron | 35.0% | |
| AGAAAATTGGCATCTGCAAT+TGG | + | chr3_1:37200110-37200129 | None:intergenic | 35.0% | |
| AAGAAACTGAGAAGAAGCCA+TGG | + | chr3_1:37195232-37195251 | None:intergenic | 40.0% | |
| ! | TGGATGGTTCTTCTGAAAGT+GGG | + | chr3_1:37195273-37195292 | None:intergenic | 40.0% |
| ! | ATGGATGGTTCTTCTGAAAG+TGG | + | chr3_1:37195274-37195293 | None:intergenic | 40.0% |
| ! | GCTTTGACTTTGACAAACTG+AGG | + | chr3_1:37195357-37195376 | None:intergenic | 40.0% |
| GTTTGTCAAAGTCAAAGCCA+TGG | - | chr3_1:37195359-37195378 | Msa0356920:CDS | 40.0% | |
| TCTGGAAGAATCAGAAACCA+TGG | + | chr3_1:37195379-37195398 | None:intergenic | 40.0% | |
| AACATAAGAAACGACAGGCA+GGG | + | chr3_1:37195431-37195450 | None:intergenic | 40.0% | |
| AAACATAAGAAACGACAGGC+AGG | + | chr3_1:37195432-37195451 | None:intergenic | 40.0% | |
| TAGGTAGTGTATACGAAGCA+CGG | - | chr3_1:37195501-37195520 | Msa0356920:intron | 40.0% | |
| TGCTTCATAGTTAGTGTGGT+TGG | - | chr3_1:37195657-37195676 | Msa0356920:intron | 40.0% | |
| ! | TCGGACTAAAAGTGAGTTGA+AGG | + | chr3_1:37196123-37196142 | None:intergenic | 40.0% |
| ! | CCACAATGTCAATGGTTCTA+TGG | + | chr3_1:37196389-37196408 | None:intergenic | 40.0% |
| CCATAGAACCATTGACATTG+TGG | - | chr3_1:37196386-37196405 | Msa0356920:intron | 40.0% | |
| TTGTGTATGACCCTGATGAA+AGG | - | chr3_1:37196471-37196490 | Msa0356920:intron | 40.0% | |
| GCTAGCTGATCAAATTGACA+AGG | - | chr3_1:37196502-37196521 | Msa0356920:intron | 40.0% | |
| AGCTGATCAAATTGACAAGG+AGG | - | chr3_1:37196505-37196524 | Msa0356920:intron | 40.0% | |
| TCCTGAGAATAACCAACAAG+AGG | - | chr3_1:37196661-37196680 | Msa0356920:intron | 40.0% | |
| CCTGAGAATAACCAACAAGA+GGG | - | chr3_1:37196662-37196681 | Msa0356920:intron | 40.0% | |
| ATAACCAACAAGAGGGAAGA+CGG | - | chr3_1:37196669-37196688 | Msa0356920:intron | 40.0% | |
| !! | TCCTGAGTTGGTAATTCTGA+TGG | - | chr3_1:37196905-37196924 | Msa0356920:intron | 40.0% |
| TCCATCAGAATTACCAACTC+AGG | + | chr3_1:37196909-37196928 | None:intergenic | 40.0% | |
| CTATTCACTTTCAACAGCTG+TGG | - | chr3_1:37197000-37197019 | Msa0356920:intron | 40.0% | |
| CACCTAGACTTATCACCTTA+TGG | + | chr3_1:37197255-37197274 | None:intergenic | 40.0% | |
| TTTGTCACCTTCGAATACCA+AGG | - | chr3_1:37197291-37197310 | Msa0356920:intron | 40.0% | |
| ! | GCCCCTTGATGATAGAAATT+TGG | - | chr3_1:37197342-37197361 | Msa0356920:intron | 40.0% |
| !!! | GGGCACTGAAAAGTTCTTTT+GGG | - | chr3_1:37197494-37197513 | Msa0356920:intron | 40.0% |
| TTGGATAAAAGGGTTCCAAC+TGG | - | chr3_1:37197642-37197661 | Msa0356920:intron | 40.0% | |
| TGGATAAAAGGGTTCCAACT+GGG | - | chr3_1:37197643-37197662 | Msa0356920:intron | 40.0% | |
| CAATGCTGCAACTGCATTAT+GGG | - | chr3_1:37197689-37197708 | Msa0356920:intron | 40.0% | |
| GCACCGTTAGAGAAAAAGAA+GGG | + | chr3_1:37197792-37197811 | None:intergenic | 40.0% | |
| TGCACCGTTAGAGAAAAAGA+AGG | + | chr3_1:37197793-37197812 | None:intergenic | 40.0% | |
| ATTGTCAATGTGTCCTCCAA+TGG | - | chr3_1:37197944-37197963 | Msa0356920:intron | 40.0% | |
| ACATCACCGAGATTGATCTT+TGG | - | chr3_1:37198167-37198186 | Msa0356920:intron | 40.0% | |
| TGTGTGAGTTCTTGTAGTCA+AGG | + | chr3_1:37198417-37198436 | None:intergenic | 40.0% | |
| ! | TAATGCTAGCTTCCTGCATT+AGG | + | chr3_1:37198460-37198479 | None:intergenic | 40.0% |
| AATATCCGAAGATACTAGCG+GGG | + | chr3_1:37198559-37198578 | None:intergenic | 40.0% | |
| GAATATCCGAAGATACTAGC+GGG | + | chr3_1:37198560-37198579 | None:intergenic | 40.0% | |
| GGAATATCCGAAGATACTAG+CGG | + | chr3_1:37198561-37198580 | None:intergenic | 40.0% | |
| GGTTCTCATAAAACCTCAAC+AGG | - | chr3_1:37198584-37198603 | Msa0356920:intron | 40.0% | |
| TTCAACTGCAGAAGTCTACA+AGG | - | chr3_1:37198611-37198630 | Msa0356920:intron | 40.0% | |
| TCCTCTCCAGCAATATTGAA+GGG | + | chr3_1:37198753-37198772 | None:intergenic | 40.0% | |
| ATCCTCTCCAGCAATATTGA+AGG | + | chr3_1:37198754-37198773 | None:intergenic | 40.0% | |
| ATTGCTGGAGAGGATTTCAA+CGG | - | chr3_1:37198759-37198778 | Msa0356920:intron | 40.0% | |
| ! | GGTTCTGCAAATGATAACGA+AGG | + | chr3_1:37199138-37199157 | None:intergenic | 40.0% |
| GTTATCATTTGCAGAACCTC+CGG | - | chr3_1:37199140-37199159 | Msa0356920:intron | 40.0% | |
| GTTTCAGTCGTTTGAGAGAA+GGG | + | chr3_1:37199179-37199198 | None:intergenic | 40.0% | |
| TGTTTCAGTCGTTTGAGAGA+AGG | + | chr3_1:37199180-37199199 | None:intergenic | 40.0% | |
| ATGCTGTCTTTATGTCAGGA+AGG | - | chr3_1:37199232-37199251 | Msa0356920:intron | 40.0% | |
| !!! | CACTTCTTCGCTGATTTTAG+TGG | + | chr3_1:37199485-37199504 | None:intergenic | 40.0% |
| ! | GGAAGCACAATTGTTGGAAT+TGG | - | chr3_1:37199631-37199650 | Msa0356920:intron | 40.0% |
| CAGGTCAGCTTCAATAACTT+AGG | - | chr3_1:37199713-37199732 | Msa0356920:intron | 40.0% | |
| ! | TGCCAATTTTCTCACTAGAG+AGG | - | chr3_1:37200118-37200137 | Msa0356920:intron | 40.0% |
| TGCCTCTCTAGTGAGAAAAT+TGG | + | chr3_1:37200123-37200142 | None:intergenic | 40.0% | |
| GAAATAAATGACTCAGGGGT+AGG | + | chr3_1:37200176-37200195 | None:intergenic | 40.0% | |
| CAATAACTTTACAGCCGTTG+CGG | + | chr3_1:37200430-37200449 | None:intergenic | 40.0% | |
| ! | TTCTGAAAGTGGGGATAGAG+TGG | + | chr3_1:37195263-37195282 | None:intergenic | 45.0% |
| ! | GGATGGTTCTTCTGAAAGTG+GGG | + | chr3_1:37195272-37195291 | None:intergenic | 45.0% |
| GACCCATTTGGTCTGAATTG+AGG | + | chr3_1:37195300-37195319 | None:intergenic | 45.0% | |
| ACATAAGAAACGACAGGCAG+GGG | + | chr3_1:37195430-37195449 | None:intergenic | 45.0% | |
| ATCTGTGTTTGTGTCGTGTC+TGG | - | chr3_1:37195616-37195635 | Msa0356920:intron | 45.0% | |
| CGTGCATACCACAATGTCAA+TGG | + | chr3_1:37196397-37196416 | None:intergenic | 45.0% | |
| TACTTTGTTCTCTCCGTGCA+AGG | - | chr3_1:37196544-37196563 | Msa0356920:intron | 45.0% | |
| ! | CCCTCTTGTTGGTTATTCTC+AGG | + | chr3_1:37196665-37196684 | None:intergenic | 45.0% |
| TAACCAACAAGAGGGAAGAC+GGG | - | chr3_1:37196670-37196689 | Msa0356920:intron | 45.0% | |
| GGAAGACGGGTATCATGATT+TGG | - | chr3_1:37196683-37196702 | Msa0356920:intron | 45.0% | |
| CGGACTAATCTATCCTGAGT+TGG | - | chr3_1:37196893-37196912 | Msa0356920:intron | 45.0% | |
| TGCATAGCAGAAACAACCTC+TGG | - | chr3_1:37196959-37196978 | Msa0356920:CDS | 45.0% | |
| GTGATTGTAGCCACGAATTG+CGG | - | chr3_1:37197022-37197041 | Msa0356920:intron | 45.0% | |
| TGCAATTGTTCCGCAATTCG+TGG | + | chr3_1:37197035-37197054 | None:intergenic | 45.0% | |
| GCAGCTGAATAGACCTTTCA+CGG | - | chr3_1:37197052-37197071 | Msa0356920:intron | 45.0% | |
| AATAGAAATGCGGCCGTGAA+AGG | + | chr3_1:37197068-37197087 | None:intergenic | 45.0% | |
| TTCACGGCCGCATTTCTATT+CGG | - | chr3_1:37197068-37197087 | Msa0356920:intron | 45.0% | |
| AATGGCAAACTGCAGATCGT+GGG | + | chr3_1:37197108-37197127 | None:intergenic | 45.0% | |
| TAATGGCAAACTGCAGATCG+TGG | + | chr3_1:37197109-37197128 | None:intergenic | 45.0% | |
| ! | AAGGCATCCTTGGTATTCGA+AGG | + | chr3_1:37197301-37197320 | None:intergenic | 45.0% |
| ! | ATTAGTGGACAAGGCATCCT+TGG | + | chr3_1:37197311-37197330 | None:intergenic | 45.0% |
| CCTTGTCCACTAATGTGTCT+GGG | - | chr3_1:37197317-37197336 | Msa0356920:intron | 45.0% | |
| CTTGTCCACTAATGTGTCTG+GGG | - | chr3_1:37197318-37197337 | Msa0356920:intron | 45.0% | |
| !!! | CGGGCACTGAAAAGTTCTTT+TGG | - | chr3_1:37197493-37197512 | Msa0356920:intron | 45.0% |
| GGATAAAAGGGTTCCAACTG+GGG | - | chr3_1:37197644-37197663 | Msa0356920:intron | 45.0% | |
| GCAATGCTGCAACTGCATTA+TGG | - | chr3_1:37197688-37197707 | Msa0356920:intron | 45.0% | |
| CAATCTCACTTGACCATTCC+TGG | + | chr3_1:37197758-37197777 | None:intergenic | 45.0% | |
| CAGGAATGGTCAAGTGAGAT+TGG | - | chr3_1:37197756-37197775 | Msa0356920:CDS | 45.0% | |
| GGTATCGCAAAACAAGACTG+TGG | + | chr3_1:37198032-37198051 | None:intergenic | 45.0% | |
| ATATCCGAAGATACTAGCGG+GGG | + | chr3_1:37198558-37198577 | None:intergenic | 45.0% | |
| TGTCGACCCTTCAATATTGC+TGG | - | chr3_1:37198744-37198763 | Msa0356920:intron | 45.0% | |
| ACCCTTCAATATTGCTGGAG+AGG | - | chr3_1:37198749-37198768 | Msa0356920:intron | 45.0% | |
| TTGCTGGAGAGGATTTCAAC+GGG | - | chr3_1:37198760-37198779 | Msa0356920:intron | 45.0% | |
| CCTTCGCGTGAACTATATCA+TGG | + | chr3_1:37198918-37198937 | None:intergenic | 45.0% | |
| CCATGATATAGTTCACGCGA+AGG | - | chr3_1:37198915-37198934 | Msa0356920:intron | 45.0% | |
| AAACAGCGAATTACAGCAGC+TGG | - | chr3_1:37199195-37199214 | Msa0356920:intron | 45.0% | |
| TACCGAGACGTATTCTTGTC+AGG | - | chr3_1:37199694-37199713 | Msa0356920:intron | 45.0% | |
| GACCTGACAAGAATACGTCT+CGG | + | chr3_1:37199699-37199718 | None:intergenic | 45.0% | |
| TCACTAGAGAGGCAAATGAG+TGG | - | chr3_1:37200129-37200148 | Msa0356920:intron | 45.0% | |
| TACGAAGCACGGACACTCTT+CGG | - | chr3_1:37195512-37195531 | Msa0356920:intron | 50.0% | |
| GTATGTGTGGATGTCGGTGT+CGG | + | chr3_1:37195556-37195575 | None:intergenic | 50.0% | |
| ACAAGGAGGCTCCCATTTCA+AGG | - | chr3_1:37196519-37196538 | Msa0356920:intron | 50.0% | |
| ATACCCGTCTTCCCTCTTGT+TGG | + | chr3_1:37196676-37196695 | None:intergenic | 50.0% | |
| GCCTTGTCCACTAATGTGTC+TGG | - | chr3_1:37197316-37197335 | Msa0356920:intron | 50.0% | |
| ! | CCCAGACACATTAGTGGACA+AGG | + | chr3_1:37197320-37197339 | None:intergenic | 50.0% |
| TGGGCAGCAAATCAGTTCAG+TGG | - | chr3_1:37197708-37197727 | Msa0356920:intron | 50.0% | |
| TTCCTGGAGTTCTTTCTCCG+TGG | + | chr3_1:37197742-37197761 | None:intergenic | 50.0% | |
| CGGAGAAAGAACTCCAGGAA+TGG | - | chr3_1:37197742-37197761 | Msa0356920:CDS | 50.0% | |
| TATTTGGACTCACCTCGCCT+CGG | + | chr3_1:37197830-37197849 | None:intergenic | 50.0% | |
| GCGAGGTGAGTCCAAATACT+AGG | - | chr3_1:37197832-37197851 | Msa0356920:CDS | 50.0% | |
| TGTTCCCCCGCTAGTATCTT+CGG | - | chr3_1:37198551-37198570 | Msa0356920:intron | 50.0% | |
| GCAGTTGAACAAGCCTGTTG+AGG | + | chr3_1:37198600-37198619 | None:intergenic | 50.0% | |
| AATGATACAGCGTCTACGGC+TGG | - | chr3_1:37198708-37198727 | Msa0356920:intron | 50.0% | |
| TTCACGCGAAGGTAATCGAG+CGG | - | chr3_1:37198926-37198945 | Msa0356920:intron | 50.0% | |
| GAAGGGAGAACTTCAAACGC+CGG | + | chr3_1:37199162-37199181 | None:intergenic | 50.0% | |
| ! | TGCAGCGGAAGCACAATTGT+TGG | - | chr3_1:37199625-37199644 | Msa0356920:intron | 50.0% |
| TAAGAAACGACAGGCAGGGG+AGG | + | chr3_1:37195427-37195446 | None:intergenic | 55.0% | |
| GGACATGTTAGTCCCTCCAC+CGG | - | chr3_1:37196840-37196859 | Msa0356920:intron | 55.0% | |
| GACATGTTAGTCCCTCCACC+GGG | - | chr3_1:37196841-37196860 | Msa0356920:intron | 55.0% | |
| ACATGTTAGTCCCTCCACCG+GGG | - | chr3_1:37196842-37196861 | Msa0356920:intron | 55.0% | |
| TAAACACCGAAGGCAGTCCC+CGG | + | chr3_1:37196862-37196881 | None:intergenic | 55.0% | |
| AGCAAAGAGCAACGCACCAG+AGG | + | chr3_1:37196978-37196997 | None:intergenic | 55.0% | |
| TCTGGTGCGTTGCTCTTTGC+TGG | - | chr3_1:37196977-37196996 | Msa0356920:CDS | 55.0% | |
| AAAAGGGTTCCAACTGGGGC+AGG | - | chr3_1:37197648-37197667 | Msa0356920:intron | 55.0% | |
| GTTCAGTGGTTGTCCTGCCA+CGG | - | chr3_1:37197722-37197741 | Msa0356920:CDS | 55.0% | |
| TGGAGTTCTTTCTCCGTGGC+AGG | + | chr3_1:37197738-37197757 | None:intergenic | 55.0% | |
| TGCCACGGAGAAAGAACTCC+AGG | - | chr3_1:37197737-37197756 | Msa0356920:CDS | 55.0% | |
| AACGGTGCAGCCTATTGCAC+TGG | - | chr3_1:37197804-37197823 | Msa0356920:CDS | 55.0% | |
| CTGGAGAGGATTTCAACGGG+TGG | - | chr3_1:37198763-37198782 | Msa0356920:intron | 55.0% | |
| CGAATTACAGCAGCTGGTCG+TGG | - | chr3_1:37199201-37199220 | Msa0356920:intron | 55.0% | |
| TCAGGGGTAGGAGTTGAAGC+AGG | + | chr3_1:37200164-37200183 | None:intergenic | 55.0% | |
| ! | ATGGTGGAGCTTTGCCGCAA+CGG | - | chr3_1:37200413-37200432 | Msa0356920:five_prime_UTR | 55.0% |
| GCACGGACACTCTTCGGACT+AGG | - | chr3_1:37195518-37195537 | Msa0356920:intron | 60.0% | |
| GGCAAACTGCAGATCGTGGG+CGG | + | chr3_1:37197105-37197124 | None:intergenic | 60.0% | |
| GGGCACCCCAGACACATTAG+TGG | + | chr3_1:37197326-37197345 | None:intergenic | 60.0% | |
| GTTCCAACTGGGGCAGGACT+TGG | - | chr3_1:37197654-37197673 | Msa0356920:intron | 60.0% | |
| GGGAGAACTTCAAACGCCGG+AGG | + | chr3_1:37199159-37199178 | None:intergenic | 60.0% | |
| CCACCAAGTCCTGCCCCAGT+TGG | + | chr3_1:37197660-37197679 | None:intergenic | 65.0% | |
| CCAACTGGGGCAGGACTTGG+TGG | - | chr3_1:37197657-37197676 | Msa0356920:intron | 65.0% | |
| !! | ACTGGGGCAGGACTTGGTGG+TGG | - | chr3_1:37197660-37197679 | Msa0356920:intron | 65.0% |
| ! | GCAGCCTATTGCACTGGCCG+AGG | - | chr3_1:37197810-37197829 | Msa0356920:CDS | 65.0% |
| CTCGCCTCGGCCAGTGCAAT+AGG | + | chr3_1:37197817-37197836 | None:intergenic | 65.0% | |
| ! | CTATTGCACTGGCCGAGGCG+AGG | - | chr3_1:37197815-37197834 | Msa0356920:CDS | 65.0% |
| CGAAGGCAGTCCCCGGTGGA+GGG | + | chr3_1:37196855-37196874 | None:intergenic | 70.0% | |
| CCTCCACCGGGGACTGCCTT+CGG | - | chr3_1:37196853-37196872 | Msa0356920:intron | 70.0% | |
| ACACCGAAGGCAGTCCCCGG+TGG | + | chr3_1:37196859-37196878 | None:intergenic | 70.0% | |
| CCGAAGGCAGTCCCCGGTGG+AGG | + | chr3_1:37196856-37196875 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 37195094 | 37200453 | 37195094 | ID=Msa0356920;Name=Msa0356920 |
| chr3_1 | mRNA | 37195094 | 37200453 | 37195094 | ID=Msa0356920-mRNA-1;Parent=Msa0356920;Name=Msa0356920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=137|1|1|1|1|1|11|245|392 |
| chr3_1 | exon | 37195094 | 37195430 | 37195094 | ID=Msa0356920-mRNA-1:exon:6797;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37195832 | 37195917 | 37195832 | ID=Msa0356920-mRNA-1:exon:6796;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37196294 | 37196393 | 37196294 | ID=Msa0356920-mRNA-1:exon:6795;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37196730 | 37196829 | 37196730 | ID=Msa0356920-mRNA-1:exon:6794;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37196915 | 37197007 | 37196915 | ID=Msa0356920-mRNA-1:exon:6793;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37197711 | 37197911 | 37197711 | ID=Msa0356920-mRNA-1:exon:6792;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37198032 | 37198088 | 37198032 | ID=Msa0356920-mRNA-1:exon:6791;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37198184 | 37198288 | 37198184 | ID=Msa0356920-mRNA-1:exon:6790;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37198828 | 37198896 | 37198828 | ID=Msa0356920-mRNA-1:exon:6789;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37198982 | 37199077 | 37198982 | ID=Msa0356920-mRNA-1:exon:6788;Parent=Msa0356920-mRNA-1 |
| chr3_1 | exon | 37200137 | 37200453 | 37200137 | ID=Msa0356920-mRNA-1:exon:6787;Parent=Msa0356920-mRNA-1 |
| chr3_1 | five_prime_UTR | 37200317 | 37200453 | 37200317 | ID=Msa0356920-mRNA-1:five_prime_utr;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37200137 | 37200316 | 37200137 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37198982 | 37199077 | 37198982 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37198828 | 37198896 | 37198828 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37198184 | 37198288 | 37198184 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37198032 | 37198088 | 37198032 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37197711 | 37197911 | 37197711 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37196915 | 37197007 | 37196915 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37196730 | 37196829 | 37196730 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37196294 | 37196393 | 37196294 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37195832 | 37195917 | 37195832 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | CDS | 37195339 | 37195430 | 37195339 | ID=Msa0356920-mRNA-1:cds;Parent=Msa0356920-mRNA-1 |
| chr3_1 | three_prime_UTR | 37195094 | 37195338 | 37195094 | ID=Msa0356920-mRNA-1:three_prime_utr;Parent=Msa0356920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
