AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0879820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0879820 MtrunA17_Chr3g0138501 88.704 301 25 4 1 300 1 293 4.19e-178 493
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0879820 AT5G11450.1 63.672 256 86 3 49 300 45 297 1.43e-113 330
Msa0879820 AT5G11450.2 63.672 256 86 3 49 300 63 315 1.83e-113 330

Find 74 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATAAGGTTGTTAT+TGG 0.169527 6_1:-22666191 None:intergenic
ACAAAGATCCCTGGAGATTT+TGG 0.175536 6_1:+22670114 Msa0879820:CDS
ACTGAAACGGTTGTCTCTTT+AGG 0.194094 6_1:+22670282 Msa0879820:three_prime_UTR
CTGAAACGGTTGTCTCTTTA+GGG 0.239298 6_1:+22670283 Msa0879820:three_prime_UTR
GAAATACTTACCATTGAATT+AGG 0.251354 6_1:-22668984 None:intergenic
ACTCTTCAAAGAACATAATA+TGG 0.255715 6_1:-22670202 None:intergenic
TGTCTTGCAGTGGCTCTTGC+TGG 0.263989 6_1:+22666438 Msa0879820:intron
AGGAGCATTTGGTTTGGTTT+TGG 0.272796 6_1:-22666228 None:intergenic
TCTTATCCTTCAAGTTTATA+AGG 0.274761 6_1:-22667868 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 6_1:-22670272 None:intergenic
AAGAGGAATTTACCAGAAAA+AGG 0.297343 6_1:-22666364 None:intergenic
CGCGAAGTGGTGAAACTAAC+TGG 0.325804 6_1:+22666105 Msa0879820:five_prime_UTR
GTCATCATCATTCTATCAAA+AGG 0.356945 6_1:-22670312 None:intergenic
TATAGGTGGGGTGATGGAAT+TGG 0.358565 6_1:+22666078 Msa0879820:five_prime_UTR
AGATTGAAGGCGAACCTTAC+TGG 0.380241 6_1:+22668934 Msa0879820:intron
CCAATAACAACCTTATCTTC+AGG 0.404699 6_1:+22666191 Msa0879820:CDS
CTGAAGATAAGGTTGTTATT+GGG 0.405745 6_1:-22666190 None:intergenic
GGATTGTTGGAAGGAGCATT+TGG 0.408319 6_1:-22666239 None:intergenic
CTGAAGAATCAGGAATTTAC+CGG 0.413569 6_1:+22669088 Msa0879820:CDS
TGCAAACCTTATAAACTTGA+AGG 0.413975 6_1:+22667862 Msa0879820:CDS
AAGAATAAGAGCTGGATTGT+TGG 0.426768 6_1:-22666167 None:intergenic
ACTTCAACAAGACCCCAAAA+TGG 0.433609 6_1:+22666470 Msa0879820:CDS
ATTCATGTAGTAACCTTTGT+GGG 0.433909 6_1:+22670164 Msa0879820:three_prime_UTR
TGAAAGTGAGATAATGTTAT+AGG 0.440242 6_1:+22666061 None:intergenic
ATTGTCTCCTCACAGATTGA+AGG 0.445126 6_1:+22668921 Msa0879820:intron
GTTGGAAGGAGCATTTGGTT+TGG 0.448463 6_1:-22666234 None:intergenic
GTTGTACAGTCTGAAGAATC+AGG 0.450686 6_1:+22669078 Msa0879820:intron
TATTCATGTAGTAACCTTTG+TGG 0.456061 6_1:+22670163 Msa0879820:three_prime_UTR
GCAGCCGATGAATATCGTTC+TGG 0.459979 6_1:-22667390 None:intergenic
AATCTCCAGGGATCTTTGTA+TGG 0.474697 6_1:-22670110 None:intergenic
TAATGTTATAGGTGGGGTGA+TGG 0.475652 6_1:+22666072 Msa0879820:five_prime_UTR
ACTTGAAGGATAAGAGCAAA+TGG 0.476008 6_1:+22667876 Msa0879820:CDS
AAGAGGGTAAAGATAAGAAT+AGG 0.477402 6_1:-22666517 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 6_1:+22670269 Msa0879820:three_prime_UTR
GGATTACCCTCCTGAAGATA+AGG 0.481706 6_1:-22666201 None:intergenic
TCATCATCATTCTATCAAAA+GGG 0.486686 6_1:-22670311 None:intergenic
TCGTAAATCACCTAATTCAA+TGG 0.488014 6_1:+22668974 Msa0879820:CDS
TTTAGCTGACAAATCTTCAC+TGG 0.488647 6_1:+22667925 Msa0879820:CDS
TTTATAAGGTTTGCACTTGG+AGG 0.505460 6_1:-22667854 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 6_1:+22670105 Msa0879820:CDS
TGCATCGAGAACTGAACTCT+CGG 0.532100 6_1:-22668657 None:intergenic
TTATAAGGTTTGCACTTGGA+GGG 0.533271 6_1:-22667853 None:intergenic
TTATTGGGAAGAATAAGAGC+TGG 0.537380 6_1:-22666175 None:intergenic
AATTAGGTGATTTACGAATG+AGG 0.544454 6_1:-22668968 None:intergenic
TAAATGGCTGCATATGAATG+AGG 0.562818 6_1:+22670419 Msa0879820:three_prime_UTR
AAAGAGACAACCGTTTCAGT+AGG 0.566133 6_1:-22670279 None:intergenic
TTTATCATCGGATTGTTGGA+AGG 0.566618 6_1:-22666248 None:intergenic
AAGAGACAACCGTTTCAGTA+GGG 0.567852 6_1:-22670278 None:intergenic
AGGTATTCATAATACCAGTA+AGG 0.568849 6_1:-22668948 None:intergenic
TCTTAAATACCTAGTCATAG+TGG 0.573279 6_1:+22670345 Msa0879820:intron
AAGTGAGATAATGTTATAGG+TGG 0.580126 6_1:+22666064 None:intergenic
ATGGACTGCAAAAGATGTTG+TGG 0.582234 6_1:+22667895 Msa0879820:CDS
CAATCTCATCATTTCCGTCA+CGG 0.585889 6_1:+22667735 Msa0879820:CDS
ACTGAGGGTCGAAGCGCTGA+TGG 0.592389 6_1:-22669439 None:intergenic
ATAAGAGCTGGATTGTTGGA+AGG 0.595730 6_1:-22666163 None:intergenic
AAACTAACTGGAGCTAGCAA+TGG 0.598377 6_1:+22666117 Msa0879820:exon
AAGTTTATAAGGTTTGCACT+TGG 0.598414 6_1:-22667857 None:intergenic
AGTGAGATAATGTTATAGGT+GGG 0.602141 6_1:+22666065 None:intergenic
CTGTTGAAGCAACATAATGC+CGG 0.605398 6_1:-22669107 None:intergenic
GTGAGATAATGTTATAGGTG+GGG 0.605698 6_1:+22666066 None:intergenic
CTCCAGGGATCTTTGTATGG+AGG 0.613390 6_1:-22670107 None:intergenic
AAAGCCAGAACGATATTCAT+CGG 0.615878 6_1:+22667386 Msa0879820:CDS
ATAACAACCTTATCTTCAGG+AGG 0.618318 6_1:+22666194 Msa0879820:CDS
CTCGGCTGAGCGCTGAACTG+AGG 0.632575 6_1:-22668639 None:intergenic
AATTCCTTGCAGCTAATGCG+CGG 0.633327 6_1:+22667677 Msa0879820:intron
GCTTCAACAGCAGAAAGAGA+TGG 0.651152 6_1:+22669120 Msa0879820:CDS
TAATTAGAACCACTATGACT+AGG 0.657996 6_1:-22670354 None:intergenic
TAACAACCTTATCTTCAGGA+GGG 0.664496 6_1:+22666195 Msa0879820:CDS
ACATGAATTTCACCCCACAA+AGG 0.669412 6_1:-22670177 None:intergenic
AGATTGAGGAAATACCGTGA+CGG 0.681795 6_1:-22667749 None:intergenic
TTCATGTAGTAACCTTTGTG+GGG 0.682116 6_1:+22670165 Msa0879820:three_prime_UTR
TTGTTAGAGATAGTGAAGTG+AGG 0.696186 6_1:-22666333 None:intergenic
CTTCGACCCTCAGTCCACAG+TGG 0.711960 6_1:+22669448 Msa0879820:CDS
TGGAATTGGAAATCGCGAAG+TGG 0.727811 6_1:+22666092 Msa0879820:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAAATAAAATAAAA+TGG - chr6_1:22666602-22666621 None:intergenic 10.0%
!! AACTATAAATAAAGAAATAA+GGG - chr6_1:22667070-22667089 None:intergenic 10.0%
!! TATTTATAGTTGTTATAAAT+TGG + chr6_1:22667079-22667098 Msa0879820:intron 10.0%
!! AATATCAGAAATAAATTTAA+AGG - chr6_1:22668597-22668616 None:intergenic 10.0%
!! CAACTATAAATAAAGAAATA+AGG - chr6_1:22667071-22667090 None:intergenic 15.0%
!!! TAGTTTAATTATAGTTTTGT+TGG - chr6_1:22667270-22667289 None:intergenic 15.0%
!! AAAACTATAATTAAACTAGT+TGG + chr6_1:22667272-22667291 Msa0879820:intron 15.0%
!! AAAATGATCATAAAAAATAC+TGG + chr6_1:22668141-22668160 Msa0879820:intron 15.0%
!!! AAAATATTGATTTAACATGT+TGG - chr6_1:22668202-22668221 None:intergenic 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG - chr6_1:22668382-22668401 None:intergenic 15.0%
!! ATTAGAATTCATATTATTCT+CGG - chr6_1:22668452-22668471 None:intergenic 15.0%
!!! TGTTACAAATTTACATATTT+TGG + chr6_1:22668873-22668892 Msa0879820:intron 15.0%
!! AAAAATTATTCATCTATCAA+TGG + chr6_1:22669789-22669808 Msa0879820:intron 15.0%
!! AAAATTATTCATCTATCAAT+GGG + chr6_1:22669790-22669809 Msa0879820:intron 15.0%
!! AAAAAATTATTAGAATGTCA+AGG - chr6_1:22670015-22670034 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG + chr6_1:22670023-22670042 Msa0879820:intron 15.0%
!! TGAAAAACTTGAAATTTAAA+TGG + chr6_1:22670403-22670422 Msa0879820:three_prime_UTR 15.0%
!!! TGAAAAATCTCTTTTATCAT+CGG - chr6_1:22666263-22666282 None:intergenic 20.0%
!!! TTGAAGACAAAATTTTTAGA+GGG - chr6_1:22666549-22666568 None:intergenic 20.0%
!!! TTTGAAGACAAAATTTTTAG+AGG - chr6_1:22666550-22666569 None:intergenic 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG + chr6_1:22666550-22666569 Msa0879820:CDS 20.0%
!! AGATTTAAAGATTAATGAGT+TGG + chr6_1:22666827-22666846 Msa0879820:intron 20.0%
!! TGGAAACAAATTGAAAAAAA+AGG + chr6_1:22667002-22667021 Msa0879820:intron 20.0%
!! ATGTTATTGATATTGTTGAA+TGG + chr6_1:22667143-22667162 Msa0879820:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG + chr6_1:22667144-22667163 Msa0879820:intron 20.0%
!! ATTTACTCTTGCTAATAATT+TGG - chr6_1:22667214-22667233 None:intergenic 20.0%
!! AACTCTTTCCATATAATTAA+AGG + chr6_1:22667352-22667371 Msa0879820:intron 20.0%
!! ACTCTTTCCATATAATTAAA+GGG + chr6_1:22667353-22667372 Msa0879820:intron 20.0%
!!! TATAAGCTCTTTTAAAAGAT+AGG + chr6_1:22667540-22667559 Msa0879820:intron 20.0%
!! ACTAGATATTATCTCTAATT+GGG + chr6_1:22668090-22668109 Msa0879820:intron 20.0%
!!! TAGAAGTTTTGATGTAATAT+TGG + chr6_1:22668329-22668348 Msa0879820:intron 20.0%
!! GAGAATAATATGAATTCTAA+TGG + chr6_1:22668451-22668470 Msa0879820:intron 20.0%
!!! TTCTTTTTTTAAGGAAATTG+TGG + chr6_1:22669020-22669039 Msa0879820:intron 20.0%
!! AGATCCATAGAAAAAAAATA+AGG + chr6_1:22669319-22669338 Msa0879820:intron 20.0%
!!! TTAGCCTTATTTTTTTTCTA+TGG - chr6_1:22669326-22669345 None:intergenic 20.0%
!!! TCTTTTTTGGAAAAGAATAA+AGG + chr6_1:22669765-22669784 Msa0879820:intron 20.0%
!!! ATGATTTGAAATAGTATGTT+AGG - chr6_1:22669912-22669931 None:intergenic 20.0%
!!! ATTCGTTAATTTTCAAATGA+AGG - chr6_1:22669965-22669984 None:intergenic 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG + chr6_1:22670022-22670041 Msa0879820:intron 20.0%
!!! AATAATTTTTTATGCAGATG+GGG + chr6_1:22670024-22670043 Msa0879820:intron 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG + chr6_1:22670216-22670235 Msa0879820:three_prime_UTR 20.0%
! CGAAAATAAAATAAAATGGC+AGG - chr6_1:22666598-22666617 None:intergenic 25.0%
!! TTTAAAGATTAATGAGTTGG+TGG + chr6_1:22666830-22666849 Msa0879820:intron 25.0%
!! AATGAACTTCTTTTCTCAAT+GGG - chr6_1:22667119-22667138 None:intergenic 25.0%
!! TAATGAACTTCTTTTCTCAA+TGG - chr6_1:22667120-22667139 None:intergenic 25.0%
! ATAATTTGGAGATGTGTTAA+TGG - chr6_1:22667200-22667219 None:intergenic 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG + chr6_1:22667324-22667343 Msa0879820:intron 25.0%
! GATTCTACCCTTTAATTATA+TGG - chr6_1:22667363-22667382 None:intergenic 25.0%
!!! AGCAATTTTAATCCAGAAAA+AGG - chr6_1:22667652-22667671 None:intergenic 25.0%
!!! GAAAATGATAAAGCATTGAA+TGG - chr6_1:22667803-22667822 None:intergenic 25.0%
!! TTTTCCCATTAAATTCAGAT+AGG + chr6_1:22667830-22667849 Msa0879820:intron 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG - chr6_1:22667871-22667890 None:intergenic 25.0%
! GATAATATCTAGTGAGTAAT+GGG - chr6_1:22668083-22668102 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG - chr6_1:22668084-22668103 None:intergenic 25.0%
! CACTAGATATTATCTCTAAT+TGG + chr6_1:22668089-22668108 Msa0879820:intron 25.0%
!! ATCATTTTATATCGCTTATC+TGG - chr6_1:22668129-22668148 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG + chr6_1:22668344-22668363 Msa0879820:intron 25.0%
! ATATTGGATACAAGAATGAA+GGG + chr6_1:22668345-22668364 Msa0879820:intron 25.0%
!! ACAAACAAATCACATGTTTT+GGG - chr6_1:22668820-22668839 None:intergenic 25.0%
!! AACAAACAAATCACATGTTT+TGG - chr6_1:22668821-22668840 None:intergenic 25.0%
! GAAATACTTACCATTGAATT+AGG - chr6_1:22668987-22669006 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG + chr6_1:22669011-22669030 Msa0879820:intron 25.0%
! AAAGTAGGAATAATTTGAGA+GGG - chr6_1:22669150-22669169 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG - chr6_1:22669151-22669170 None:intergenic 25.0%
! TAATAATTGTGCTTGATTTC+AGG + chr6_1:22669405-22669424 Msa0879820:intron 25.0%
! GTTCTCAGTAAGAATTTATA+TGG - chr6_1:22669735-22669754 None:intergenic 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG - chr6_1:22669938-22669957 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG - chr6_1:22669939-22669958 None:intergenic 25.0%
! ACTCTTCAAAGAACATAATA+TGG - chr6_1:22670205-22670224 None:intergenic 25.0%
! TCATCATCATTCTATCAAAA+GGG - chr6_1:22670314-22670333 None:intergenic 25.0%
! CTGAAGATAAGGTTGTTATT+GGG - chr6_1:22666193-22666212 None:intergenic 30.0%
!!! ATTTGGTTTGGTTTTGGTTA+AGG - chr6_1:22666225-22666244 None:intergenic 30.0%
! TTCTTCTTCTTCTTCTAGAA+GGG + chr6_1:22666291-22666310 Msa0879820:CDS 30.0%
AAGAGGAATTTACCAGAAAA+AGG - chr6_1:22666367-22666386 None:intergenic 30.0%
!! TCCAAAAAAGAAGCCATTTT+GGG - chr6_1:22666486-22666505 None:intergenic 30.0%
! ATCCAAAAAAGAAGCCATTT+TGG - chr6_1:22666487-22666506 None:intergenic 30.0%
AAGAGGGTAAAGATAAGAAT+AGG - chr6_1:22666520-22666539 None:intergenic 30.0%
TAAAATAAAATGGCAGGCAA+AGG - chr6_1:22666592-22666611 None:intergenic 30.0%
! GTTTCTGTTATAGCTTTTCT+AGG - chr6_1:22666686-22666705 None:intergenic 30.0%
! AATTTGTTTCCAGTTTAAGC+GGG - chr6_1:22666994-22667013 None:intergenic 30.0%
! CAATTTGTTTCCAGTTTAAG+CGG - chr6_1:22666995-22667014 None:intergenic 30.0%
! TGTGTTAATGGCTAGTTATA+TGG - chr6_1:22667188-22667207 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG + chr6_1:22667221-22667240 Msa0879820:intron 30.0%
AACAATCAATGAAAACTTGC+AGG - chr6_1:22667322-22667341 None:intergenic 30.0%
CAAAAAAACTTACGAGAAAG+TGG - chr6_1:22667417-22667436 None:intergenic 30.0%
!!! TTTTTTTGTCTTCCTTTGCA+AGG + chr6_1:22667429-22667448 Msa0879820:intron 30.0%
AAGTTTATAAGGTTTGCACT+TGG - chr6_1:22667860-22667879 None:intergenic 30.0%
TGCAAACCTTATAAACTTGA+AGG + chr6_1:22667862-22667881 Msa0879820:CDS 30.0%
GTTACTCATGCTATTCTTAT+TGG + chr6_1:22667954-22667973 Msa0879820:intron 30.0%
AACTATAGTTTAACCATGTG+GGG - chr6_1:22668278-22668297 None:intergenic 30.0%
CAACTATAGTTTAACCATGT+GGG - chr6_1:22668279-22668298 None:intergenic 30.0%
TCAACTATAGTTTAACCATG+TGG - chr6_1:22668280-22668299 None:intergenic 30.0%
CCTAAAGAATACAACTTCAA+AGG - chr6_1:22668512-22668531 None:intergenic 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG + chr6_1:22668509-22668528 Msa0879820:intron 30.0%
AGGTATTCATAATACCAGTA+AGG - chr6_1:22668951-22668970 None:intergenic 30.0%
AATTAGGTGATTTACGAATG+AGG - chr6_1:22668971-22668990 None:intergenic 30.0%
TCGTAAATCACCTAATTCAA+TGG + chr6_1:22668974-22668993 Msa0879820:CDS 30.0%
AAAAAAGAAAATGCACCAAG+AGG - chr6_1:22669009-22669028 None:intergenic 30.0%
! GGTGTATGTGATTTTTACTT+TGG + chr6_1:22669041-22669060 Msa0879820:intron 30.0%
AATTCACATTAGAATGCACA+AGG - chr6_1:22669201-22669220 None:intergenic 30.0%
TTTCAAGCAATATTATGCAG+AGG - chr6_1:22669227-22669246 None:intergenic 30.0%
ATACTTGTTCCAGAGATAAA+AGG + chr6_1:22669294-22669313 Msa0879820:intron 30.0%
!! AAGTTGACTTGACAATAGTT+TGG + chr6_1:22669705-22669724 Msa0879820:intron 30.0%
TTCAGTAGAAAATGAAGACT+TGG - chr6_1:22669874-22669893 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG + chr6_1:22669935-22669954 Msa0879820:intron 30.0%
! ATTTTTCACCAAAATCTCCA+GGG - chr6_1:22670125-22670144 None:intergenic 30.0%
TATTCATGTAGTAACCTTTG+TGG + chr6_1:22670163-22670182 Msa0879820:three_prime_UTR 30.0%
ATTCATGTAGTAACCTTTGT+GGG + chr6_1:22670164-22670183 Msa0879820:three_prime_UTR 30.0%
GTCATCATCATTCTATCAAA+AGG - chr6_1:22670315-22670334 None:intergenic 30.0%
TCTTAAATACCTAGTCATAG+TGG + chr6_1:22670345-22670364 Msa0879820:intron 30.0%
TAATTAGAACCACTATGACT+AGG - chr6_1:22670357-22670376 None:intergenic 30.0%
!! CAATGGTTTTACACTCTCTA+TGG + chr6_1:22666134-22666153 Msa0879820:exon 35.0%
AAGAATAAGAGCTGGATTGT+TGG - chr6_1:22666170-22666189 None:intergenic 35.0%
TTATTGGGAAGAATAAGAGC+TGG - chr6_1:22666178-22666197 None:intergenic 35.0%
CCTGAAGATAAGGTTGTTAT+TGG - chr6_1:22666194-22666213 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG + chr6_1:22666191-22666210 Msa0879820:CDS 35.0%
ATAACAACCTTATCTTCAGG+AGG + chr6_1:22666194-22666213 Msa0879820:CDS 35.0%
TAACAACCTTATCTTCAGGA+GGG + chr6_1:22666195-22666214 Msa0879820:CDS 35.0%
TTTATCATCGGATTGTTGGA+AGG - chr6_1:22666251-22666270 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG - chr6_1:22666255-22666274 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTAGA+AGG + chr6_1:22666290-22666309 Msa0879820:CDS 35.0%
TTGTTAGAGATAGTGAAGTG+AGG - chr6_1:22666336-22666355 None:intergenic 35.0%
AGCAGCAAATGAAGAAAAAG+AGG - chr6_1:22666384-22666403 None:intergenic 35.0%
!! CCAAAAAAGAAGCCATTTTG+GGG - chr6_1:22666485-22666504 None:intergenic 35.0%
TCTTCTCTCTACATGAAAGT+GGG - chr6_1:22666725-22666744 None:intergenic 35.0%
TTTCATGTAGAGAGAAGAGT+AGG + chr6_1:22666727-22666746 Msa0879820:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG + chr6_1:22666764-22666783 Msa0879820:intron 35.0%
! AAGTCTTATCCCATTAAGTG+TGG - chr6_1:22666899-22666918 None:intergenic 35.0%
AAAGCCAGAACGATATTCAT+CGG + chr6_1:22667386-22667405 Msa0879820:CDS 35.0%
! GCTTTGTAGTTTCCTTTTTC+TGG + chr6_1:22667637-22667656 Msa0879820:intron 35.0%
! ATGCAACAAGTTTGAGATTG+AGG - chr6_1:22667766-22667785 None:intergenic 35.0%
AGGGCCTATCTGAATTTAAT+GGG - chr6_1:22667837-22667856 None:intergenic 35.0%
TTATAAGGTTTGCACTTGGA+GGG - chr6_1:22667856-22667875 None:intergenic 35.0%
TTTATAAGGTTTGCACTTGG+AGG - chr6_1:22667857-22667876 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG + chr6_1:22667876-22667895 Msa0879820:CDS 35.0%
TTTAGCTGACAAATCTTCAC+TGG + chr6_1:22667925-22667944 Msa0879820:CDS 35.0%
TTGAAGAAACAGTAGCTATC+GGG - chr6_1:22668025-22668044 None:intergenic 35.0%
CTTGAAGAAACAGTAGCTAT+CGG - chr6_1:22668026-22668045 None:intergenic 35.0%
! TATCTCTAATTGGGAAGCAT+AGG + chr6_1:22668099-22668118 Msa0879820:intron 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG + chr6_1:22668399-22668418 Msa0879820:intron 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG + chr6_1:22668400-22668419 Msa0879820:intron 35.0%
TTGACACCCAAAAGCTAAAA+AGG - chr6_1:22668409-22668428 None:intergenic 35.0%
TTTGAGCACTTGTATATGCA+AGG + chr6_1:22668478-22668497 Msa0879820:intron 35.0%
TGAAGTTGTATTCTTTAGGC+AGG + chr6_1:22668513-22668532 Msa0879820:intron 35.0%
TTGTATTCTTTAGGCAGGAT+TGG + chr6_1:22668518-22668537 Msa0879820:intron 35.0%
CAATGGTAAGTATTTCCTCT+TGG + chr6_1:22668991-22669010 Msa0879820:intron 35.0%
CTGAAGAATCAGGAATTTAC+CGG + chr6_1:22669088-22669107 Msa0879820:CDS 35.0%
CACGTTTGCAATACTAAAGT+AGG - chr6_1:22669165-22669184 None:intergenic 35.0%
TATTGCTTGAAAGCTCTTGT+TGG + chr6_1:22669235-22669254 Msa0879820:intron 35.0%
CAAGTATGACTCTGATTGAA+GGG - chr6_1:22669281-22669300 None:intergenic 35.0%
ACAAGTATGACTCTGATTGA+AGG - chr6_1:22669282-22669301 None:intergenic 35.0%
! TGGATCTTTCCTTTTATCTC+TGG - chr6_1:22669306-22669325 None:intergenic 35.0%
TTCTTACTGAGAACATGTGA+CGG + chr6_1:22669741-22669760 Msa0879820:intron 35.0%
!!! AACATGTGACGGTTCTTTTT+TGG + chr6_1:22669752-22669771 Msa0879820:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG - chr6_1:22670050-22670069 None:intergenic 35.0%
! GGAGGAACATAATTTTCTGT+AGG - chr6_1:22670092-22670111 None:intergenic 35.0%
! GATTTTTCACCAAAATCTCC+AGG - chr6_1:22670126-22670145 None:intergenic 35.0%
TTCATGTAGTAACCTTTGTG+GGG + chr6_1:22670165-22670184 Msa0879820:three_prime_UTR 35.0%
TTTCCAAATCCCTACTGAAA+CGG + chr6_1:22670269-22670288 Msa0879820:three_prime_UTR 35.0%
TAAATGGCTGCATATGAATG+AGG + chr6_1:22670419-22670438 Msa0879820:three_prime_UTR 35.0%
TAATGTTATAGGTGGGGTGA+TGG + chr6_1:22666072-22666091 Msa0879820:five_prime_UTR 40.0%
AAACTAACTGGAGCTAGCAA+TGG + chr6_1:22666117-22666136 Msa0879820:exon 40.0%
ATAAGAGCTGGATTGTTGGA+AGG - chr6_1:22666166-22666185 None:intergenic 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG - chr6_1:22666231-22666250 None:intergenic 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG + chr6_1:22666307-22666326 Msa0879820:CDS 40.0%
! ACAACATGCGTTCCTTTTTC+TGG + chr6_1:22666352-22666371 Msa0879820:CDS 40.0%
GCAAAGTCAGTCTCAATTGT+AGG - chr6_1:22666408-22666427 None:intergenic 40.0%
TATTCTGTCTTGTCTTGCAG+TGG + chr6_1:22666428-22666447 Msa0879820:intron 40.0%
ACTTCAACAAGACCCCAAAA+TGG + chr6_1:22666470-22666489 Msa0879820:CDS 40.0%
!!! CCCCAAAATGGCTTCTTTTT+TGG + chr6_1:22666482-22666501 Msa0879820:CDS 40.0%
!! TTTTAGAGGGAAGCTCAAGA+GGG - chr6_1:22666536-22666555 None:intergenic 40.0%
!! TTTTTAGAGGGAAGCTCAAG+AGG - chr6_1:22666537-22666556 None:intergenic 40.0%
CTACATGAAAGTGGGAAAAG+AGG - chr6_1:22666717-22666736 None:intergenic 40.0%
CTCTTCTCTCTACATGAAAG+TGG - chr6_1:22666726-22666745 None:intergenic 40.0%
GGCTTGTAGATTCTGTAGTA+AGG + chr6_1:22666748-22666767 Msa0879820:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG + chr6_1:22666767-22666786 Msa0879820:intron 40.0%
CTTATCCCATTAAGTGTGGT+CGG - chr6_1:22666895-22666914 None:intergenic 40.0%
GGCAAGAGAGAAAACAAAAC+AGG - chr6_1:22666940-22666959 None:intergenic 40.0%
TTCTCTCTTGCCATCCAAAA+AGG + chr6_1:22666948-22666967 Msa0879820:intron 40.0%
TAATGCTTTGGCCATAGATG+TGG + chr6_1:22667233-22667252 Msa0879820:intron 40.0%
AATGCTTTGGCCATAGATGT+GGG + chr6_1:22667234-22667253 Msa0879820:intron 40.0%
AAAACTTGCAGGCAACAAGA+GGG - chr6_1:22667311-22667330 None:intergenic 40.0%
GATAAACTCTTGCCTTGCAA+AGG - chr6_1:22667444-22667463 None:intergenic 40.0%
CAATCTCATCATTTCCGTCA+CGG + chr6_1:22667735-22667754 Msa0879820:CDS 40.0%
AGATTGAGGAAATACCGTGA+CGG - chr6_1:22667752-22667771 None:intergenic 40.0%
GAGGGCCTATCTGAATTTAA+TGG - chr6_1:22667838-22667857 None:intergenic 40.0%
! ATGGACTGCAAAAGATGTTG+TGG + chr6_1:22667895-22667914 Msa0879820:CDS 40.0%
ACAGACCAGAGAGTTAAGAA+TGG + chr6_1:22668250-22668269 Msa0879820:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG + chr6_1:22668543-22668562 Msa0879820:intron 40.0%
ACCTTTGTGACGTAAACAGT+TGG - chr6_1:22668547-22668566 None:intergenic 40.0%
AACTGTTTACGTCACAAAGG+TGG + chr6_1:22668546-22668565 Msa0879820:intron 40.0%
GGATTTACACTACAGATCAC+AGG - chr6_1:22668576-22668595 None:intergenic 40.0%
ATTGTCTCCTCACAGATTGA+AGG + chr6_1:22668921-22668940 Msa0879820:intron 40.0%
TACTTTGGACTTGTGACTGA+TGG + chr6_1:22669056-22669075 Msa0879820:intron 40.0%
GTTGTACAGTCTGAAGAATC+AGG + chr6_1:22669078-22669097 Msa0879820:intron 40.0%
CTGTTGAAGCAACATAATGC+CGG - chr6_1:22669110-22669129 None:intergenic 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG - chr6_1:22669457-22669476 None:intergenic 40.0%
AATCTCCAGGGATCTTTGTA+TGG - chr6_1:22670113-22670132 None:intergenic 40.0%
! ACAAAGATCCCTGGAGATTT+TGG + chr6_1:22670114-22670133 Msa0879820:CDS 40.0%
ACATGAATTTCACCCCACAA+AGG - chr6_1:22670180-22670199 None:intergenic 40.0%
AAGAGACAACCGTTTCAGTA+GGG - chr6_1:22670281-22670300 None:intergenic 40.0%
AAAGAGACAACCGTTTCAGT+AGG - chr6_1:22670282-22670301 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTT+AGG + chr6_1:22670282-22670301 Msa0879820:three_prime_UTR 40.0%
CTGAAACGGTTGTCTCTTTA+GGG + chr6_1:22670283-22670302 Msa0879820:three_prime_UTR 40.0%
!! TATAGGTGGGGTGATGGAAT+TGG + chr6_1:22666078-22666097 Msa0879820:five_prime_UTR 45.0%
TGGAATTGGAAATCGCGAAG+TGG + chr6_1:22666092-22666111 Msa0879820:five_prime_UTR 45.0%
GGATTACCCTCCTGAAGATA+AGG - chr6_1:22666204-22666223 None:intergenic 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG - chr6_1:22666237-22666256 None:intergenic 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG - chr6_1:22666242-22666261 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG + chr6_1:22666310-22666329 Msa0879820:CDS 45.0%
ATGTAGCCGACCACACTTAA+TGG + chr6_1:22666886-22666905 Msa0879820:intron 45.0%
TGTAGCCGACCACACTTAAT+GGG + chr6_1:22666887-22666906 Msa0879820:intron 45.0%
CACTAGTGATCCCACATCTA+TGG - chr6_1:22667247-22667266 None:intergenic 45.0%
AAACTTGCAGGCAACAAGAG+GGG - chr6_1:22667310-22667329 None:intergenic 45.0%
GAAAACTTGCAGGCAACAAG+AGG - chr6_1:22667312-22667331 None:intergenic 45.0%
AATTCCTTGCAGCTAATGCG+CGG + chr6_1:22667677-22667696 Msa0879820:intron 45.0%
! AGTAGCTATCGGGTATTGCT+CGG - chr6_1:22668015-22668034 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG - chr6_1:22668660-22668679 None:intergenic 45.0%
AGATTGAAGGCGAACCTTAC+TGG + chr6_1:22668934-22668953 Msa0879820:intron 45.0%
GCTTCAACAGCAGAAAGAGA+TGG + chr6_1:22669120-22669139 Msa0879820:CDS 45.0%
TGACTCTGATTGAAGGGAAG+AGG - chr6_1:22669275-22669294 None:intergenic 45.0%
!!! CTTTTTTCCACTGTGGACTG+AGG - chr6_1:22669458-22669477 None:intergenic 45.0%
!!! GAGGGTACTTTTTTCCACTG+TGG - chr6_1:22669465-22669484 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+TGG + chr6_1:22669566-22669585 Msa0879820:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG + chr6_1:22670105-22670124 Msa0879820:CDS 45.0%
CAACCGTTTCAGTAGGGATT+TGG - chr6_1:22670275-22670294 None:intergenic 45.0%
!! AAAATAATAAATATTTGTAT+TGG + chr6_1:22669345-22669364 Msa0879820:intron 5.0%
CGCGAAGTGGTGAAACTAAC+TGG + chr6_1:22666105-22666124 Msa0879820:five_prime_UTR 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG + chr6_1:22666982-22667001 Msa0879820:intron 50.0%
GCAGCCGATGAATATCGTTC+TGG - chr6_1:22667393-22667412 None:intergenic 50.0%
! TAGCTATCGGGTATTGCTCG+GGG - chr6_1:22668013-22668032 None:intergenic 50.0%
! GTAGCTATCGGGTATTGCTC+GGG - chr6_1:22668014-22668033 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG - chr6_1:22668258-22668277 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG + chr6_1:22668262-22668281 Msa0879820:intron 50.0%
ACATGCTCACGTGTCTGTGT+TGG - chr6_1:22668728-22668747 None:intergenic 50.0%
AGGTTCGCCTTCAATCTGTG+AGG - chr6_1:22668931-22668950 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr6_1:22669483-22669502 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr6_1:22669482-22669501 None:intergenic 50.0%
TAGACGCAGTTGATCAGTGG+CGG - chr6_1:22669678-22669697 None:intergenic 50.0%
AGCTAGACGCAGTTGATCAG+TGG - chr6_1:22669681-22669700 None:intergenic 50.0%
CTCCAGGGATCTTTGTATGG+AGG - chr6_1:22670110-22670129 None:intergenic 50.0%
TGTCTTGCAGTGGCTCTTGC+TGG + chr6_1:22666438-22666457 Msa0879820:intron 55.0%
TGCCATCCAAAAAGGCCCAG+CGG + chr6_1:22666956-22666975 Msa0879820:intron 55.0%
! ATCAGTGGCGGAGGAAATGC+TGG - chr6_1:22669666-22669685 None:intergenic 55.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG - chr6_1:22669442-22669461 None:intergenic 60.0%
CTTCGACCCTCAGTCCACAG+TGG + chr6_1:22669448-22669467 Msa0879820:CDS 60.0%
ACGCAGTTGATCAGTGGCGG+AGG - chr6_1:22669675-22669694 None:intergenic 60.0%
! CGCCGCTGGGCCTTTTTGGA+TGG - chr6_1:22666961-22666980 None:intergenic 65.0%
GCAGCCGCGCATTAGCTGCA+AGG - chr6_1:22667684-22667703 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG - chr6_1:22668642-22668661 None:intergenic 65.0%
! GCTGCGCCGCTGGGCCTTTT+TGG - chr6_1:22666965-22666984 None:intergenic 70.0%
GGGCAACAAGCTGCGCCGCT+GGG - chr6_1:22666974-22666993 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG - chr6_1:22666975-22666994 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 22666072 22670449 22666072 ID=Msa0879820;Name=Msa0879820
chr6_1 mRNA 22666072 22670449 22666072 ID=Msa0879820-mRNA-1;Parent=Msa0879820;Name=Msa0879820-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|0.9|0.81|11|280|300
chr6_1 exon 22666072 22666373 22666072 ID=Msa0879820-mRNA-1:exon:6192;Parent=Msa0879820-mRNA-1
chr6_1 exon 22666448 22666571 22666448 ID=Msa0879820-mRNA-1:exon:6193;Parent=Msa0879820-mRNA-1
chr6_1 exon 22667374 22667423 22667374 ID=Msa0879820-mRNA-1:exon:6194;Parent=Msa0879820-mRNA-1
chr6_1 exon 22667689 22667756 22667689 ID=Msa0879820-mRNA-1:exon:6195;Parent=Msa0879820-mRNA-1
chr6_1 exon 22667848 22667946 22667848 ID=Msa0879820-mRNA-1:exon:6196;Parent=Msa0879820-mRNA-1
chr6_1 exon 22668632 22668691 22668632 ID=Msa0879820-mRNA-1:exon:6197;Parent=Msa0879820-mRNA-1
chr6_1 exon 22668936 22668995 22668936 ID=Msa0879820-mRNA-1:exon:6198;Parent=Msa0879820-mRNA-1
chr6_1 exon 22669087 22669141 22669087 ID=Msa0879820-mRNA-1:exon:6199;Parent=Msa0879820-mRNA-1
chr6_1 exon 22669427 22669476 22669427 ID=Msa0879820-mRNA-1:exon:6200;Parent=Msa0879820-mRNA-1
chr6_1 exon 22670041 22670321 22670041 ID=Msa0879820-mRNA-1:exon:6201;Parent=Msa0879820-mRNA-1
chr6_1 exon 22670352 22670449 22670352 ID=Msa0879820-mRNA-1:exon:6202;Parent=Msa0879820-mRNA-1
chr6_1 five_prime_UTR 22666072 22666135 22666072 ID=Msa0879820-mRNA-1:five_prime_utr;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22666136 22666373 22666136 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22666448 22666571 22666448 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22667374 22667423 22667374 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22667689 22667756 22667689 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22667848 22667946 22667848 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22668632 22668691 22668632 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22668936 22668995 22668936 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22669087 22669141 22669087 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22669427 22669476 22669427 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 CDS 22670041 22670139 22670041 ID=Msa0879820-mRNA-1:cds;Parent=Msa0879820-mRNA-1
chr6_1 three_prime_UTR 22670140 22670321 22670140 ID=Msa0879820-mRNA-1:three_prime_utr;Parent=Msa0879820-mRNA-1
chr6_1 three_prime_UTR 22670352 22670449 22670352 ID=Msa0879820-mRNA-1:three_prime_utr;Parent=Msa0879820-mRNA-1
Gene Sequence

>Msa0879820

ATGGTTTTACACTCTCTATGGCTATGTCCTTCCAACAATCCAGCTCTTATTCTTCCCAATAACAACCTTATCTTCAGGAGGGTAATCCTTAACCAAAACCAAACCAAATGCTCCTTCCAACAATCCGATGATAAAAGAGATTTTTCATCATCATCTTCTTCTTCTTCTTCTAGAAGGGATTTTGTGCTGTTAGGAGGCCTCACTTCACTATCTCTAACAACATGCGTTCCTTTTTCTGTGGCTCTTGCTGGAGATGAAGAACTTCAACAAGACCCCAAAATGGCTTCTTTTTTGGATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGGCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTGCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAAATTGAAGGCGAACCTTACTGGTATTATGAATACCTCATTCGTAAATCACCTAATTCAATGTCTGAAGAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCCTACAGAAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGA

Protein sequence

>Msa0879820

MVLHSLWLCPSNNPALILPNNNLIFRRVILNQNQTKCSFQQSDDKRDFSSSSSSSSSRRDFVLLGGLTSLSLTTCVPFSVALAGDEELQQDPKMASFLDEVNAYSYLYPLELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDEIEGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW*