AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427750 MtrunA17_Chr3g0130681 86.012 336 18 5 1 334 1 309 0.0 540
Msa0427750 MtrunA17_Chr8g0384691 57.576 231 76 2 105 333 117 327 2.28e-92 278
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427750 AT4G33480.1 65.532 235 58 4 103 334 121 335 3.85e-102 304

Find 86 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAGATGCATTCGTAATT+TGG 0.146385 3_2:-78422271 None:intergenic
GAAGAAGGAGAATGCTTCTT+TGG 0.277770 3_2:-78420770 None:intergenic
ATCCTGATGAAGAACTAAAA+TGG 0.282546 3_2:-78424218 None:intergenic
AACAAGAGTAATGGTGAAAT+TGG 0.297804 3_2:+78420848 Msa0427750:CDS
AAATTCAGTCTCTTCATCTA+TGG 0.303961 3_2:-78424013 None:intergenic
ACGAAACCAGCCGGTGGTTT+AGG 0.307214 3_2:-78420923 None:intergenic
AGAAGAATTGGAAATGGAAT+TGG 0.329446 3_2:-78420876 None:intergenic
AATTTGAGGCAGAGAAGAAT+TGG 0.329493 3_2:-78420888 None:intergenic
ATTGGAAGCGCTAGAGATAA+TGG 0.329827 3_2:-78420741 None:intergenic
ATCAGGATTGCCCCACTGTT+GGG 0.364007 3_2:+78424233 Msa0427750:three_prime_UTR
CGAATGCATCTGATTTATAG+TGG 0.365590 3_2:+78422279 Msa0427750:CDS
CAAGCTTCTTACTTCTTCAA+TGG 0.373400 3_2:+78420961 Msa0427750:CDS
TCCTGCGAACAACCTTCCTT+TGG 0.378943 3_2:+78421259 Msa0427750:CDS
AGGCAGAGAAGAATTGGAAA+TGG 0.386145 3_2:-78420882 None:intergenic
GTGCTCTGTAATATTTGTAT+AGG 0.414803 3_2:-78421595 None:intergenic
GGGAGCTGAGAAGGAAATAA+TGG 0.418161 3_2:-78423882 None:intergenic
CATCAGGATTGCCCCACTGT+TGG 0.420070 3_2:+78424232 Msa0427750:three_prime_UTR
TTCCTTTGGAATGCGTGATA+AGG 0.446204 3_2:+78421273 Msa0427750:CDS
TCCCCACTCATTACAGAGTC+TGG 0.452281 3_2:+78423859 Msa0427750:CDS
TTGTTTCTGGTGGATGAAGA+AGG 0.472935 3_2:-78420785 None:intergenic
AGATGGTAAAGATGATGGCT+TGG 0.488428 3_2:+78422938 Msa0427750:intron
TTGGAAGCGCTAGAGATAAT+GGG 0.489961 3_2:-78420740 None:intergenic
GACTGAATTTAATGCCTTGG+TGG 0.490843 3_2:+78424026 Msa0427750:CDS
AGAAATCACACACTTCAATC+AGG 0.494930 3_2:+78422974 Msa0427750:CDS
GCACTCCTTGACTCACTGTT+GGG 0.503400 3_2:+78424148 Msa0427750:CDS
GACATCTTTGACTTTCATGC+AGG 0.506567 3_2:+78422439 Msa0427750:CDS
GGTAGTGGCGTAGGAATTTG+AGG 0.510408 3_2:-78420902 None:intergenic
CGCACTCCTTGACTCACTGT+TGG 0.510918 3_2:+78424147 Msa0427750:CDS
GGAAAGGAAAATTGAAGTCT+CGG 0.511604 3_2:-78420650 None:intergenic
AAAACTTACTTCTAAAACAA+GGG 0.520997 3_2:-78427281 None:intergenic
GAAATACATGGGAGCTGAGA+AGG 0.521671 3_2:-78423891 None:intergenic
AGAGACTGAATTTAATGCCT+TGG 0.522159 3_2:+78424023 Msa0427750:CDS
GAAAGGAAAATTGAAGTCTC+GGG 0.522171 3_2:-78420649 None:intergenic
CCAGCCGGTGGTTTAGGTAG+TGG 0.522568 3_2:-78420917 None:intergenic
GCAAGTGCAAAAGAAGCAGC+AGG 0.531459 3_2:-78422249 None:intergenic
TTATCCTTGCAGGATCAGAA+TGG 0.536096 3_2:+78423802 Msa0427750:intron
ATGCTTCTTTGGTTGAACAT+TGG 0.536426 3_2:-78420759 None:intergenic
AGAACTAAAATGGAAACAGT+AGG 0.541288 3_2:-78424208 None:intergenic
AAATTGAAGTCTCGGGGAGG+AGG 0.544141 3_2:-78420642 None:intergenic
GGAGGAAGGATAAACATTCA+AGG 0.546652 3_2:-78420624 None:intergenic
AAGAATAACAACAAGAGTAA+TGG 0.549289 3_2:+78420839 Msa0427750:CDS
GGCCAGACTCTGTAATGAGT+GGG 0.549330 3_2:-78423861 None:intergenic
TCCAAAGGAAGGTTGTTCGC+AGG 0.550682 3_2:-78421260 None:intergenic
CTCCTTATCACGCATTCCAA+AGG 0.556000 3_2:-78421275 None:intergenic
GAGATAATGGGTTGAAAGCG+AGG 0.561102 3_2:-78420728 None:intergenic
GTCAGCACTCACTAAAACAA+GGG 0.563335 3_2:-78427239 None:intergenic
GAACTAAAATGGAAACAGTA+GGG 0.568044 3_2:-78424207 None:intergenic
AAATCGCTGATGATGTAAGT+AGG 0.570650 3_2:+78423833 Msa0427750:CDS
TGAAGTCTCGGGGAGGAGGA+AGG 0.572117 3_2:-78420638 None:intergenic
TTATGAACAGGAATTGCTTG+AGG 0.572765 3_2:+78423972 Msa0427750:intron
CATTTAACTTACATGTCAAG+TGG 0.573255 3_2:-78421341 None:intergenic
GAATGCATCTGATTTATAGT+GGG 0.573548 3_2:+78422280 Msa0427750:CDS
ATATTACAGAGCACAGGTGA+TGG 0.577846 3_2:+78421604 Msa0427750:CDS
CCACTACCTAAACCACCGGC+TGG 0.578308 3_2:+78420917 Msa0427750:CDS
TCTATGGCGCTAATGACAGC+AGG 0.580399 3_2:-78423997 None:intergenic
AGATAATGGGTTGAAAGCGA+GGG 0.583691 3_2:-78420727 None:intergenic
TTATCACGCATTCCAAAGGA+AGG 0.584077 3_2:-78421271 None:intergenic
TACAGAGCACAGGTGATGGA+TGG 0.592566 3_2:+78421608 Msa0427750:CDS
ATTTAACTTACATGTCAAGT+GGG 0.593365 3_2:-78421340 None:intergenic
AGATGATGGCTTGGCAACTG+AGG 0.596641 3_2:+78422947 Msa0427750:CDS
GGTTGATTGAGTGTTGAATG+AGG 0.602908 3_2:-78420671 None:intergenic
CTGCATTCAGACCCAACAGT+GGG 0.604290 3_2:-78424244 None:intergenic
TGTCAGCACTCACTAAAACA+AGG 0.612202 3_2:-78427240 None:intergenic
TGGCCAGACTCTGTAATGAG+TGG 0.615058 3_2:-78423862 None:intergenic
AACTAACAAGTGTGGCAAGT+CGG 0.615087 3_2:-78420985 None:intergenic
ATACAAATATTACAGAGCAC+AGG 0.618579 3_2:+78421598 Msa0427750:CDS
ATTGAGTGTTGAATGAGGAA+AGG 0.624056 3_2:-78420666 None:intergenic
TCATCTACGACGAAACCAGC+CGG 0.625755 3_2:-78420932 None:intergenic
GAAAACTTACTTCTAAAACA+AGG 0.631725 3_2:-78427282 None:intergenic
TACGCCACTACCTAAACCAC+CGG 0.633878 3_2:+78420913 Msa0427750:CDS
AAACTTACTTCTAAAACAAG+GGG 0.635311 3_2:-78427280 None:intergenic
GATGATGGCTTGGCAACTGA+GGG 0.636441 3_2:+78422948 Msa0427750:CDS
AGAATATTCACAAGTTCTCG+AGG 0.645145 3_2:+78421296 Msa0427750:CDS
GCCAGACTCTGTAATGAGTG+GGG 0.660010 3_2:-78423860 None:intergenic
GGTTTCGTCGTAGATGACAC+TGG 0.668620 3_2:+78420938 Msa0427750:CDS
AAATTCAAAACTAACAAGTG+TGG 0.670625 3_2:-78420993 None:intergenic
TCAGCACTCACTAAAACAAG+GGG 0.671652 3_2:-78427238 None:intergenic
AAAGGAAAATTGAAGTCTCG+GGG 0.671812 3_2:-78420648 None:intergenic
CAACAGTGAGTCAAGGAGTG+CGG 0.672482 3_2:-78424146 None:intergenic
AGTGAGAACGATGAGAAGCG+TGG 0.673004 3_2:-78420692 None:intergenic
GGTGGTTTAGGTAGTGGCGT+AGG 0.681302 3_2:-78420911 None:intergenic
GGAAAATTGAAGTCTCGGGG+AGG 0.715038 3_2:-78420645 None:intergenic
GATTAAATCACATACCACCA+AGG 0.720522 3_2:-78424040 None:intergenic
TGCATTCAGACCCAACAGTG+GGG 0.726533 3_2:-78424243 None:intergenic
TCTGCATTCAGACCCAACAG+TGG 0.735904 3_2:-78424245 None:intergenic
TCTACGACGAAACCAGCCGG+TGG 0.756646 3_2:-78420929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGAATATTATTGTT+AGG + chr3_2:78421232-78421251 Msa0427750:intron 10.0%
!!! TGTAAAATATTTTTTTTGTA+GGG - chr3_2:78422771-78422790 None:intergenic 10.0%
!!! TACAAAAAAAATATTTTACA+GGG + chr3_2:78422771-78422790 Msa0427750:intron 10.0%
!!! TGTTTTTAATGTTTAATTCA+TGG + chr3_2:78421362-78421381 Msa0427750:intron 15.0%
!!! TTTATATATCTAAGGTTTTA+GGG + chr3_2:78421401-78421420 Msa0427750:intron 15.0%
!! TATTTATTAACTTTAGATTG+TGG + chr3_2:78421557-78421576 Msa0427750:intron 15.0%
!!! ACCTTTTAAGTTTTAAAAAT+AGG + chr3_2:78421704-78421723 Msa0427750:intron 15.0%
!!! TCCTATTTTTAAAACTTAAA+AGG - chr3_2:78421708-78421727 None:intergenic 15.0%
!!! TTTATATATTCAAGGTTTTA+GGG + chr3_2:78421753-78421772 Msa0427750:intron 15.0%
!!! TTCTAAAGTCTATAAAAATA+AGG + chr3_2:78421967-78421986 Msa0427750:intron 15.0%
!!! CTGTAAAATATTTTTTTTGT+AGG - chr3_2:78422772-78422791 None:intergenic 15.0%
!!! CTACAAAAAAAATATTTTAC+AGG + chr3_2:78422770-78422789 Msa0427750:intron 15.0%
!! AAAACATATTAAATTAGATG+GGG - chr3_2:78423357-78423376 None:intergenic 15.0%
!! GAAAACATATTAAATTAGAT+GGG - chr3_2:78423358-78423377 None:intergenic 15.0%
!! AGAAAACATATTAAATTAGA+TGG - chr3_2:78423359-78423378 None:intergenic 15.0%
!!! TAATACTATTTGAAATAAAG+CGG + chr3_2:78423407-78423426 Msa0427750:intron 15.0%
!!! ACAATTATAGTATTGATAAT+AGG - chr3_2:78424451-78424470 None:intergenic 15.0%
!! TCACAAATGAAATTATAATA+CGG - chr3_2:78424699-78424718 None:intergenic 15.0%
!!! ACAATTATAGTATTGATAAT+AGG - chr3_2:78424451-78424470 None:intergenic 15.0%
!! ATGTAGAATTACAACAAAAA+TGG + chr3_2:78420586-78420605 Msa0427750:exon 20.0%
!!! TCTTATCATTGTTGTTTTTT+GGG - chr3_2:78420814-78420833 None:intergenic 20.0%
!!! TTCTTATCATTGTTGTTTTT+TGG - chr3_2:78420815-78420834 None:intergenic 20.0%
!!! ATTATGTATTTTTTCTGTTC+TGG + chr3_2:78421022-78421041 Msa0427750:intron 20.0%
!! GATTACAGTTTATATATCTA+AGG + chr3_2:78421393-78421412 Msa0427750:intron 20.0%
!!! GTTTATATATCTAAGGTTTT+AGG + chr3_2:78421400-78421419 Msa0427750:intron 20.0%
!!! TTATATATCTAAGGTTTTAG+GGG + chr3_2:78421402-78421421 Msa0427750:intron 20.0%
!!! GTTTATATATTCAAGGTTTT+AGG + chr3_2:78421752-78421771 Msa0427750:intron 20.0%
!!! TTATATATTCAAGGTTTTAG+GGG + chr3_2:78421754-78421773 Msa0427750:intron 20.0%
!! AAAGTCTATAAAAATAAGGA+TGG + chr3_2:78421971-78421990 Msa0427750:intron 20.0%
!! ATGTTATATTCAGATTATTG+TGG + chr3_2:78422531-78422550 Msa0427750:intron 20.0%
!!! TGTTGAGATTCTATATTTTA+TGG + chr3_2:78422588-78422607 Msa0427750:intron 20.0%
!!! GTTGAGATTCTATATTTTAT+GGG + chr3_2:78422589-78422608 Msa0427750:intron 20.0%
!! CAAAAAATTGTATATTTACC+AGG + chr3_2:78422800-78422819 Msa0427750:intron 20.0%
!! TTATCATACTCGTTATAATT+AGG + chr3_2:78422836-78422855 Msa0427750:intron 20.0%
!! TATCATACTCGTTATAATTA+GGG + chr3_2:78422837-78422856 Msa0427750:intron 20.0%
!! AGTTCAAAATTTAATTCTGT+TGG - chr3_2:78423236-78423255 None:intergenic 20.0%
!! AAACATATTAAATTAGATGG+GGG - chr3_2:78423356-78423375 None:intergenic 20.0%
!! CAATATAATACTAAATTCAC+AGG - chr3_2:78423718-78423737 None:intergenic 20.0%
!!! ATTATAGTATTGATAATAGG+TGG - chr3_2:78424448-78424467 None:intergenic 20.0%
!! AATTCTCATTGTTTCATATT+CGG + chr3_2:78424635-78424654 Msa0427750:intron 20.0%
!! TTGATTGAGTTTAAAGATTA+TGG + chr3_2:78425100-78425119 Msa0427750:intron 20.0%
!! TATGAGAATAGTAACATTAT+AGG - chr3_2:78425472-78425491 None:intergenic 20.0%
!!! AATTTTGTTGAAGTTTATGT+TGG + chr3_2:78425511-78425530 Msa0427750:intron 20.0%
!!! TTATAGAAGAGTTTTTGATT+TGG + chr3_2:78425574-78425593 Msa0427750:intron 20.0%
!!! TTTTGAGTTGGATTTTATAA+TGG + chr3_2:78425633-78425652 Msa0427750:intron 20.0%
!!! AGTTTTGAGAAAAATACTAT+TGG + chr3_2:78425800-78425819 Msa0427750:intron 20.0%
!! TTAACGCCAAAAAAATATAA+TGG - chr3_2:78426078-78426097 None:intergenic 20.0%
!! CAATAATACTTCAAATGTAT+AGG - chr3_2:78426794-78426813 None:intergenic 20.0%
!!! ATTATAGTATTGATAATAGG+TGG - chr3_2:78424448-78424467 None:intergenic 20.0%
!! AAAATATATGTTGAGAAACA+TGG - chr3_2:78427180-78427199 None:intergenic 20.0%
!!! AAAACTTACTTCTAAAACAA+GGG - chr3_2:78427284-78427303 None:intergenic 20.0%
! TAGAATTACAACAAAAATGG+CGG + chr3_2:78420589-78420608 Msa0427750:exon 25.0%
! AAGAATAACAACAAGAGTAA+TGG + chr3_2:78420839-78420858 Msa0427750:CDS 25.0%
! AAATTCAAAACTAACAAGTG+TGG - chr3_2:78420996-78421015 None:intergenic 25.0%
!! TTTGGTAATTATGATTTGAC+AGG + chr3_2:78421156-78421175 Msa0427750:intron 25.0%
!! ATTTAACTTACATGTCAAGT+GGG - chr3_2:78421343-78421362 None:intergenic 25.0%
! AAAAAAGATTATCAAAACCC+TGG - chr3_2:78421531-78421550 None:intergenic 25.0%
! TCATTGCTGACAATTTAAAT+AGG + chr3_2:78421681-78421700 Msa0427750:intron 25.0%
! GACAATTTCTTGTATGATTA+CGG + chr3_2:78421730-78421749 Msa0427750:intron 25.0%
! GATTACGGTTTATATATTCA+AGG + chr3_2:78421745-78421764 Msa0427750:intron 25.0%
!! TATAAAAGGAGTGTACAAAA+TGG - chr3_2:78421799-78421818 None:intergenic 25.0%
!! CACTAAAGTCAAAATTGTTT+TGG - chr3_2:78421854-78421873 None:intergenic 25.0%
!!! CTTTAGAACTTTATATGCAA+TGG - chr3_2:78421955-78421974 None:intergenic 25.0%
!!! AAAATAAGGATGGTTTTGTA+AGG + chr3_2:78421981-78422000 Msa0427750:intron 25.0%
! GACAACCTAAATTAAAACTT+CGG + chr3_2:78422009-78422028 Msa0427750:intron 25.0%
!!! ATTTGCCGAAGTTTTAATTT+AGG - chr3_2:78422017-78422036 None:intergenic 25.0%
!! TGTTTTCTTTCCATGTTTTT+AGG + chr3_2:78422197-78422216 Msa0427750:intron 25.0%
!! CTAAAAGCTTGAAATTTGTT+TGG + chr3_2:78422658-78422677 Msa0427750:intron 25.0%
!!! GATAAATATGTTTTTAGTCC+TGG - chr3_2:78422821-78422840 None:intergenic 25.0%
!! AACATCAGCCATTAAATTTT+GGG - chr3_2:78422907-78422926 None:intergenic 25.0%
!! AAACATCAGCCATTAAATTT+TGG - chr3_2:78422908-78422927 None:intergenic 25.0%
!!! GATGTTTTCCATTTTTTAGA+TGG + chr3_2:78422921-78422940 Msa0427750:intron 25.0%
! CATCTTTACCATCTAAAAAA+TGG - chr3_2:78422932-78422951 None:intergenic 25.0%
!! TTTTTAGATGGTAAAGATGA+TGG + chr3_2:78422933-78422952 Msa0427750:intron 25.0%
!! TAAAAATTAGCTTACTTCGT+TGG + chr3_2:78423149-78423168 Msa0427750:intron 25.0%
!!! AATACTGATTCATAGAAGAA+AGG - chr3_2:78423206-78423225 None:intergenic 25.0%
!!! CTCCTACATTTTTTTCTAAT+TGG + chr3_2:78423642-78423661 Msa0427750:intron 25.0%
! TGCCAATTAGAAAAAAATGT+AGG - chr3_2:78423647-78423666 None:intergenic 25.0%
!! AAATCAAATGCATTTTACAG+TGG + chr3_2:78423672-78423691 Msa0427750:intron 25.0%
!! AATAAATAAACTGTGGATTG+TGG - chr3_2:78423744-78423763 None:intergenic 25.0%
! ACAATCCACAGTTTATTTAT+TGG + chr3_2:78423743-78423762 Msa0427750:intron 25.0%
!! GCTAATTTCATTTTATGAAC+AGG + chr3_2:78423960-78423979 Msa0427750:intron 25.0%
!! TCCAAAGTAACATTTTTCTT+TGG + chr3_2:78424064-78424083 Msa0427750:intron 25.0%
!! ACCAAAGAAAAATGTTACTT+TGG - chr3_2:78424068-78424087 None:intergenic 25.0%
!!! TACTCATTTTAGAGTTAGTT+AGG + chr3_2:78424353-78424372 Msa0427750:intron 25.0%
! AAACCCTAGAAATTGAAATT+GGG - chr3_2:78424787-78424806 None:intergenic 25.0%
!! ATCATTCTTCCTTTAATTTC+TGG + chr3_2:78424830-78424849 Msa0427750:intron 25.0%
! AAACTGAATCCAGAAATTAA+AGG - chr3_2:78424842-78424861 None:intergenic 25.0%
! AAAAAACTCGAGCAATAAAA+AGG - chr3_2:78424873-78424892 None:intergenic 25.0%
!! TTTTTCTCAAAACTTCAACT+CGG - chr3_2:78425794-78425813 None:intergenic 25.0%
!!! TTTTGTTGCTTTATCTCTAA+TGG + chr3_2:78425903-78425922 Msa0427750:intron 25.0%
!!! AGTGCTTCATTGTTTTAATT+AGG + chr3_2:78425967-78425986 Msa0427750:intron 25.0%
! TCATCATCAAATCTACATAT+TGG - chr3_2:78426223-78426242 None:intergenic 25.0%
! AAATCAATAAAGCCAACAAA+GGG - chr3_2:78426406-78426425 None:intergenic 25.0%
! AAAATCAATAAAGCCAACAA+AGG - chr3_2:78426407-78426426 None:intergenic 25.0%
!! ACATTTGAAGTATTATTGAG+TGG + chr3_2:78426796-78426815 Msa0427750:intron 25.0%
!!! TACTCATTTTAGAGTTAGTT+AGG + chr3_2:78424353-78424372 Msa0427750:intron 25.0%
!!! CATATATTTTAGTATGATCG+AGG + chr3_2:78427190-78427209 Msa0427750:intron 25.0%
!!! TGGAACAGTTAGTTTTATTA+TGG + chr3_2:78427215-78427234 Msa0427750:three_prime_UTR 25.0%
!!! AAACTTACTTCTAAAACAAG+GGG - chr3_2:78427283-78427302 None:intergenic 25.0%
!!! GAAAACTTACTTCTAAAACA+AGG - chr3_2:78427285-78427304 None:intergenic 25.0%
!!! GTTTTTTGGGTTTTTGTTTC+TGG - chr3_2:78420801-78420820 None:intergenic 30.0%
AACAAGAGTAATGGTGAAAT+TGG + chr3_2:78420848-78420867 Msa0427750:CDS 30.0%
AGAAGAATTGGAAATGGAAT+TGG - chr3_2:78420879-78420898 None:intergenic 30.0%
TATGAATCGAATTATGCAAG+TGG + chr3_2:78421085-78421104 Msa0427750:intron 30.0%
TGACGATTTCTGTTATGTTA+AGG + chr3_2:78421126-78421145 Msa0427750:intron 30.0%
TTATGTTAAGGCACAATCTT+TGG + chr3_2:78421138-78421157 Msa0427750:intron 30.0%
TTTGACAGGAATATTATTGC+AGG + chr3_2:78421170-78421189 Msa0427750:intron 30.0%
TTGACAGGAATATTATTGCA+GGG + chr3_2:78421171-78421190 Msa0427750:intron 30.0%
! CATTTAACTTACATGTCAAG+TGG - chr3_2:78421344-78421363 None:intergenic 30.0%
CGGTTTCTAAATCATATGTA+TGG + chr3_2:78421434-78421453 Msa0427750:intron 30.0%
! GATTGTGGAATTTTTACTAC+AGG + chr3_2:78421572-78421591 Msa0427750:intron 30.0%
GTGCTCTGTAATATTTGTAT+AGG - chr3_2:78421598-78421617 None:intergenic 30.0%
ATACAAATATTACAGAGCAC+AGG + chr3_2:78421598-78421617 Msa0427750:CDS 30.0%
CTGATACTTCAACTACAAAA+TGG - chr3_2:78421648-78421667 None:intergenic 30.0%
TTGTACAGCTGTACTATAAA+AGG - chr3_2:78421813-78421832 None:intergenic 30.0%
AGAACTTTATATGCAATGGT+TGG - chr3_2:78421951-78421970 None:intergenic 30.0%
ACAACGACTACAAAAACAAA+AGG - chr3_2:78422154-78422173 None:intergenic 30.0%
AATCAGATGCATTCGTAATT+TGG - chr3_2:78422274-78422293 None:intergenic 30.0%
GAATGCATCTGATTTATAGT+GGG + chr3_2:78422280-78422299 Msa0427750:CDS 30.0%
! AGATTTTATAGCTCACAACA+TGG + chr3_2:78422555-78422574 Msa0427750:intron 30.0%
TGCTTCATAACCATTTGAAT+TGG + chr3_2:78422878-78422897 Msa0427750:intron 30.0%
ATTGGACACCCAAAATTTAA+TGG + chr3_2:78422896-78422915 Msa0427750:intron 30.0%
AGTATACCAATGCAAATTTG+AGG - chr3_2:78423112-78423131 None:intergenic 30.0%
AAAGGAAAGCAAACATGATT+GGG - chr3_2:78423188-78423207 None:intergenic 30.0%
! ACTATTTGAAATAAAGCGGA+TGG + chr3_2:78423411-78423430 Msa0427750:intron 30.0%
! ACTTATTGGAATTTTGTTGC+AGG + chr3_2:78423436-78423455 Msa0427750:intron 30.0%
TCTAACAAACTTGAATATGG+AGG - chr3_2:78423526-78423545 None:intergenic 30.0%
TGCTCTAACAAACTTGAATA+TGG - chr3_2:78423529-78423548 None:intergenic 30.0%
! CAAATGCATTTTATAGTGAC+CGG + chr3_2:78423608-78423627 Msa0427750:intron 30.0%
CATGTCCAATAAATAAACTG+TGG - chr3_2:78423751-78423770 None:intergenic 30.0%
GATCATAAATTTATCCTTGC+AGG + chr3_2:78423792-78423811 Msa0427750:intron 30.0%
TACACTGATCAGAAATACAT+GGG - chr3_2:78423905-78423924 None:intergenic 30.0%
TTACACTGATCAGAAATACA+TGG - chr3_2:78423906-78423925 None:intergenic 30.0%
! ATGTATTTCTGATCAGTGTA+AGG + chr3_2:78423905-78423924 Msa0427750:intron 30.0%
! TGTATTTCTGATCAGTGTAA+GGG + chr3_2:78423906-78423925 Msa0427750:intron 30.0%
AAATGAAATTAGCGACACAA+GGG - chr3_2:78423953-78423972 None:intergenic 30.0%
AAAATGAAATTAGCGACACA+AGG - chr3_2:78423954-78423973 None:intergenic 30.0%
AAATTCAGTCTCTTCATCTA+TGG - chr3_2:78424016-78424035 None:intergenic 30.0%
GAACTAAAATGGAAACAGTA+GGG - chr3_2:78424210-78424229 None:intergenic 30.0%
AGAACTAAAATGGAAACAGT+AGG - chr3_2:78424211-78424230 None:intergenic 30.0%
!!! TTCCATTTTAGTTCTTCATC+AGG + chr3_2:78424216-78424235 Msa0427750:three_prime_UTR 30.0%
ATCCTGATGAAGAACTAAAA+TGG - chr3_2:78424221-78424240 None:intergenic 30.0%
!! GCTTTTTCTCTCTATTTTCA+TGG + chr3_2:78424475-78424494 Msa0427750:intron 30.0%
! CATTTGTGATTCTCTTGTTT+CGG + chr3_2:78424710-78424729 Msa0427750:intron 30.0%
AGAAATTGAAATTGGGGAAA+AGG - chr3_2:78424780-78424799 None:intergenic 30.0%
TTTCCCCAATTTCAATTTCT+AGG + chr3_2:78424780-78424799 Msa0427750:intron 30.0%
TTCCCCAATTTCAATTTCTA+GGG + chr3_2:78424781-78424800 Msa0427750:intron 30.0%
AACCCTAGAAATTGAAATTG+GGG - chr3_2:78424786-78424805 None:intergenic 30.0%
GAAACCCTAGAAATTGAAAT+TGG - chr3_2:78424788-78424807 None:intergenic 30.0%
TTAAAGGAAGAATGATCGAT+TGG - chr3_2:78424826-78424845 None:intergenic 30.0%
ATAGAACATGAAAGTGAATC+AGG - chr3_2:78424916-78424935 None:intergenic 30.0%
TGAAAGAGGAATCACAAAAT+GGG - chr3_2:78424947-78424966 None:intergenic 30.0%
ATGAAAGAGGAATCACAAAA+TGG - chr3_2:78424948-78424967 None:intergenic 30.0%
TCATGTTATTCCCAAATACT+AGG + chr3_2:78425073-78425092 Msa0427750:intron 30.0%
CATGTTATTCCCAAATACTA+GGG + chr3_2:78425074-78425093 Msa0427750:intron 30.0%
AATCAAGAACCCTAGTATTT+GGG - chr3_2:78425086-78425105 None:intergenic 30.0%
! TTGGAATTGTTGAGTATTGT+TGG + chr3_2:78425530-78425549 Msa0427750:intron 30.0%
! TGGAATTGTTGAGTATTGTT+GGG + chr3_2:78425531-78425550 Msa0427750:intron 30.0%
! GTTGGATTTTATAATGGTTG+TGG + chr3_2:78425639-78425658 Msa0427750:intron 30.0%
TTAGTGTTGCATCACAATTT+AGG + chr3_2:78425712-78425731 Msa0427750:intron 30.0%
!!! AGGTTGGTTTTATTTGAATG+AGG + chr3_2:78425732-78425751 Msa0427750:intron 30.0%
!!! GCTTCATTGTTTTAATTAGG+TGG + chr3_2:78425970-78425989 Msa0427750:intron 30.0%
AAAAAATATAATGGCAGCAG+AGG - chr3_2:78426069-78426088 None:intergenic 30.0%
!!! CTGCTGCCATTATATTTTTT+TGG + chr3_2:78426069-78426088 Msa0427750:intron 30.0%
!! TGTGTTTGTTGATTTGATGA+TGG + chr3_2:78426190-78426209 Msa0427750:intron 30.0%
!! TTGATGATGATTAGCCTTAT+TGG + chr3_2:78426233-78426252 Msa0427750:intron 30.0%
!!! TGATTTTAGCTTCTGTTAAG+TGG + chr3_2:78426420-78426439 Msa0427750:intron 30.0%
AACAGAAGCTAAGATCAATA+AGG - chr3_2:78426501-78426520 None:intergenic 30.0%
TTGATACTCTTATACTGTGT+TGG + chr3_2:78426642-78426661 Msa0427750:intron 30.0%
!! GCTTTTTCTCTCTATTTTCA+TGG + chr3_2:78424475-78424494 Msa0427750:intron 30.0%
AAAGGAAAATTGAAGTCTCG+GGG - chr3_2:78420651-78420670 None:intergenic 35.0%
GAAAGGAAAATTGAAGTCTC+GGG - chr3_2:78420652-78420671 None:intergenic 35.0%
GGAAAGGAAAATTGAAGTCT+CGG - chr3_2:78420653-78420672 None:intergenic 35.0%
!! ATTGAGTGTTGAATGAGGAA+AGG - chr3_2:78420669-78420688 None:intergenic 35.0%
ATGCTTCTTTGGTTGAACAT+TGG - chr3_2:78420762-78420781 None:intergenic 35.0%
!!! TTTTGGGTTTTTGTTTCTGG+TGG - chr3_2:78420798-78420817 None:intergenic 35.0%
! AATTTGAGGCAGAGAAGAAT+TGG - chr3_2:78420891-78420910 None:intergenic 35.0%
CAAGCTTCTTACTTCTTCAA+TGG + chr3_2:78420961-78420980 Msa0427750:CDS 35.0%
AGAATATTCACAAGTTCTCG+AGG + chr3_2:78421296-78421315 Msa0427750:CDS 35.0%
CATCAGAGAGATTTCACATT+GGG - chr3_2:78421470-78421489 None:intergenic 35.0%
TCATCAGAGAGATTTCACAT+TGG - chr3_2:78421471-78421490 None:intergenic 35.0%
GTGAAATCTCTCTGATGATT+TGG + chr3_2:78421473-78421492 Msa0427750:intron 35.0%
!!! TGGATTTTTAGCGTAGTGTT+GGG - chr3_2:78421511-78421530 None:intergenic 35.0%
AACACTACGCTAAAAATCCA+GGG + chr3_2:78421511-78421530 Msa0427750:intron 35.0%
TTCGGCAAATCTTCATGAAA+TGG + chr3_2:78422027-78422046 Msa0427750:intron 35.0%
! TTTTCCCATTAGCTAGGTTT+GGG - chr3_2:78422130-78422149 None:intergenic 35.0%
! ATTTTCCCATTAGCTAGGTT+TGG - chr3_2:78422131-78422150 None:intergenic 35.0%
! AAAGGATTTTCCCATTAGCT+AGG - chr3_2:78422136-78422155 None:intergenic 35.0%
TCGTAACTGACCTAAAAACA+TGG - chr3_2:78422210-78422229 None:intergenic 35.0%
!!! ATGTTTTTAGGTCAGTTACG+AGG + chr3_2:78422209-78422228 Msa0427750:intron 35.0%
CGAATGCATCTGATTTATAG+TGG + chr3_2:78422279-78422298 Msa0427750:CDS 35.0%
CATGAGAAAAGACTGACATA+TGG - chr3_2:78422310-78422329 None:intergenic 35.0%
!!! CATCTTTTTTGTTTGTCCTC+TGG - chr3_2:78422514-78422533 None:intergenic 35.0%
AGCGAGGTGAATAAATAGAA+GGG - chr3_2:78422706-78422725 None:intergenic 35.0%
AAGCGAGGTGAATAAATAGA+AGG - chr3_2:78422707-78422726 None:intergenic 35.0%
TCTATTTATTCACCTCGCTT+TGG + chr3_2:78422707-78422726 Msa0427750:intron 35.0%
!! TTTTGGGTGTCCAATTCAAA+TGG - chr3_2:78422891-78422910 None:intergenic 35.0%
AGAAATCACACACTTCAATC+AGG + chr3_2:78422974-78422993 Msa0427750:CDS 35.0%
GATTACCTAATTGAACTGTG+AGG - chr3_2:78423045-78423064 None:intergenic 35.0%
CTACATCCTCAAATTTGCAT+TGG + chr3_2:78423103-78423122 Msa0427750:intron 35.0%
! AATTAGCTTACTTCGTTGGA+TGG + chr3_2:78423153-78423172 Msa0427750:intron 35.0%
GAAAGGAAAGCAAACATGAT+TGG - chr3_2:78423189-78423208 None:intergenic 35.0%
TAAAGCGGATGGTAACTTAT+TGG + chr3_2:78423422-78423441 Msa0427750:intron 35.0%
GAGAAAATGTCACAGGTAAA+TGG - chr3_2:78423583-78423602 None:intergenic 35.0%
CGGTCACTATAAAATGCATT+TGG - chr3_2:78423610-78423629 None:intergenic 35.0%
!! TGTAGGAGTACTTCAATTTC+CGG - chr3_2:78423630-78423649 None:intergenic 35.0%
! AAATCGCTGATGATGTAAGT+AGG + chr3_2:78423833-78423852 Msa0427750:CDS 35.0%
TTATGAACAGGAATTGCTTG+AGG + chr3_2:78423972-78423991 Msa0427750:intron 35.0%
AGAGACTGAATTTAATGCCT+TGG + chr3_2:78424023-78424042 Msa0427750:CDS 35.0%
GATTAAATCACATACCACCA+AGG - chr3_2:78424043-78424062 None:intergenic 35.0%
GGAAAACATACAGAAATGAG+TGG - chr3_2:78424105-78424124 None:intergenic 35.0%
TGATACCATGTTGAGAAACA+TGG - chr3_2:78424504-78424523 None:intergenic 35.0%
CATGAAAGTGAATCAGGAAT+TGG - chr3_2:78424910-78424929 None:intergenic 35.0%
ACACAAGATGAAGATGAAAG+AGG - chr3_2:78424961-78424980 None:intergenic 35.0%
CAATCAAGAACCCTAGTATT+TGG - chr3_2:78425087-78425106 None:intergenic 35.0%
!! GTTTACTGATTTCAGTGTTG+CGG + chr3_2:78425151-78425170 Msa0427750:intron 35.0%
! TTCACCATCAATTTGCTTTG+AGG + chr3_2:78425209-78425228 Msa0427750:intron 35.0%
CAAACCTCAAAGCAAATTGA+TGG - chr3_2:78425216-78425235 None:intergenic 35.0%
! TGTTGATGAGATTGTAGTTG+CGG + chr3_2:78425260-78425279 Msa0427750:intron 35.0%
!! TGTTCTAGGTTCAGTTTTCT+TGG + chr3_2:78425293-78425312 Msa0427750:intron 35.0%
TCAACTGTGTGATTACACAT+TGG + chr3_2:78425409-78425428 Msa0427750:intron 35.0%
ACTCTTCTATAAACATGCAG+CGG - chr3_2:78425566-78425585 None:intergenic 35.0%
!!! CATAGAAGACGTTTTTGAGT+TGG + chr3_2:78425621-78425640 Msa0427750:intron 35.0%
TGTTGCATCACAATTTAGGT+TGG + chr3_2:78425716-78425735 Msa0427750:intron 35.0%
TTGATTGAGAGCAACTAATG+TGG - chr3_2:78425934-78425953 None:intergenic 35.0%
ATTAGTTGCTCTCAATCAAG+TGG + chr3_2:78425935-78425954 Msa0427750:intron 35.0%
! TTGTTACTGATTGGTGTGTA+TGG + chr3_2:78425997-78426016 Msa0427750:intron 35.0%
! TGTTACTGATTGGTGTGTAT+GGG + chr3_2:78425998-78426017 Msa0427750:intron 35.0%
! TTGCCTTTGTTTGGGTATAT+GGG + chr3_2:78426146-78426165 Msa0427750:intron 35.0%
ATACCCATATACCCAAACAA+AGG - chr3_2:78426152-78426171 None:intergenic 35.0%
CATAATGCTTAACCACCATA+GGG - chr3_2:78426383-78426402 None:intergenic 35.0%
TTAAGCATTATGCCCTTTGT+TGG + chr3_2:78426391-78426410 Msa0427750:intron 35.0%
! TTAAGCATTTTGCCCTTTGT+TGG + chr3_2:78426475-78426494 Msa0427750:intron 35.0%
AGATCAATAAGGCCAACAAA+GGG - chr3_2:78426490-78426509 None:intergenic 35.0%
AAGATCAATAAGGCCAACAA+AGG - chr3_2:78426491-78426510 None:intergenic 35.0%
TGATCTTAGCTTCTGTTAAG+TGG + chr3_2:78426504-78426523 Msa0427750:intron 35.0%
TGGTTAAGCATTTCTCTCTA+TGG + chr3_2:78426556-78426575 Msa0427750:intron 35.0%
! ATTGTTTGGATATGGTCTTG+TGG + chr3_2:78426614-78426633 Msa0427750:intron 35.0%
ATACTCTTATACTGTGTTGG+AGG + chr3_2:78426645-78426664 Msa0427750:intron 35.0%
TACTCTTATACTGTGTTGGA+GGG + chr3_2:78426646-78426665 Msa0427750:intron 35.0%
CATCAATTGCAGAGACTATT+TGG + chr3_2:78426822-78426841 Msa0427750:intron 35.0%
TGCTCTTCAATCTTCATACA+AGG - chr3_2:78426873-78426892 None:intergenic 35.0%
TTCTCTTACCTTGAGTTTGA+GGG + chr3_2:78426982-78427001 Msa0427750:intron 35.0%
!! ATTTTAGTATGATCGAGGAC+TGG + chr3_2:78427195-78427214 Msa0427750:three_prime_UTR 35.0%
GGAGGAAGGATAAACATTCA+AGG - chr3_2:78420627-78420646 None:intergenic 40.0%
!! GGTTGATTGAGTGTTGAATG+AGG - chr3_2:78420674-78420693 None:intergenic 40.0%
!! AGATAATGGGTTGAAAGCGA+GGG - chr3_2:78420730-78420749 None:intergenic 40.0%
!! TTGGAAGCGCTAGAGATAAT+GGG - chr3_2:78420743-78420762 None:intergenic 40.0%
!! ATTGGAAGCGCTAGAGATAA+TGG - chr3_2:78420744-78420763 None:intergenic 40.0%
GAAGAAGGAGAATGCTTCTT+TGG - chr3_2:78420773-78420792 None:intergenic 40.0%
!! TTGTTTCTGGTGGATGAAGA+AGG - chr3_2:78420788-78420807 None:intergenic 40.0%
AGGCAGAGAAGAATTGGAAA+TGG - chr3_2:78420885-78420904 None:intergenic 40.0%
AACTAACAAGTGTGGCAAGT+CGG - chr3_2:78420988-78421007 None:intergenic 40.0%
TTATCACGCATTCCAAAGGA+AGG - chr3_2:78421274-78421293 None:intergenic 40.0%
!! TTCCTTTGGAATGCGTGATA+AGG + chr3_2:78421273-78421292 Msa0427750:CDS 40.0%
!!! CTGGATTTTTAGCGTAGTGT+TGG - chr3_2:78421512-78421531 None:intergenic 40.0%
CAACACTACGCTAAAAATCC+AGG + chr3_2:78421510-78421529 Msa0427750:intron 40.0%
ATATTACAGAGCACAGGTGA+TGG + chr3_2:78421604-78421623 Msa0427750:CDS 40.0%
AGCATGGCATAGACATAGTA+GGG - chr3_2:78421922-78421941 None:intergenic 40.0%
AAGCATGGCATAGACATAGT+AGG - chr3_2:78421923-78421942 None:intergenic 40.0%
ATGTACCCAAACCTAGCTAA+TGG + chr3_2:78422122-78422141 Msa0427750:intron 40.0%
TGTACCCAAACCTAGCTAAT+GGG + chr3_2:78422123-78422142 Msa0427750:intron 40.0%
! GACATCTTTGACTTTCATGC+AGG + chr3_2:78422439-78422458 Msa0427750:CDS 40.0%
GTTCTAACTTCTAACACCAG+AGG + chr3_2:78422495-78422514 Msa0427750:intron 40.0%
GGTGAATAAATAGAAGGGAC+AGG - chr3_2:78422701-78422720 None:intergenic 40.0%
! AGATGGTAAAGATGATGGCT+TGG + chr3_2:78422938-78422957 Msa0427750:intron 40.0%
ACAAAAAGCAGTGGATCAGA+TGG - chr3_2:78423488-78423507 None:intergenic 40.0%
CTATTGCCTCTGTTAAACAG+TGG + chr3_2:78423550-78423569 Msa0427750:intron 40.0%
TGGTAGAGAGAAAATGTCAC+AGG - chr3_2:78423590-78423609 None:intergenic 40.0%
!! TATGATCAGCTCTAGAACAC+TGG - chr3_2:78423779-78423798 None:intergenic 40.0%
TTATCCTTGCAGGATCAGAA+TGG + chr3_2:78423802-78423821 Msa0427750:intron 40.0%
GACTGAATTTAATGCCTTGG+TGG + chr3_2:78424026-78424045 Msa0427750:CDS 40.0%
! GTATGTTTTCCCTTACACAC+AGG + chr3_2:78424114-78424133 Msa0427750:intron 40.0%
! TTTTACCCAACAGTGAGTCA+AGG - chr3_2:78424156-78424175 None:intergenic 40.0%
!! GTCTGAATGCAGAGTTTTGT+GGG + chr3_2:78424255-78424274 Msa0427750:three_prime_UTR 40.0%
ACATGGTATCAGAGCATGAT+TGG + chr3_2:78424513-78424532 Msa0427750:intron 40.0%
CAGCGGAAAAAAAATCAAGG+TGG - chr3_2:78424542-78424561 None:intergenic 40.0%
GTGCAGCGGAAAAAAAATCA+AGG - chr3_2:78424545-78424564 None:intergenic 40.0%
CAAAACCGAGGACAAAGAAA+GGG - chr3_2:78424664-78424683 None:intergenic 40.0%
ACAAAACCGAGGACAAAGAA+AGG - chr3_2:78424665-78424684 None:intergenic 40.0%
ATCGAACGAAAACAAAACCG+AGG - chr3_2:78424676-78424695 None:intergenic 40.0%
GAAGAATGATCGATTGGAGA+AGG - chr3_2:78424820-78424839 None:intergenic 40.0%
! GTTGATGAGATTGTAGTTGC+GGG + chr3_2:78425261-78425280 Msa0427750:intron 40.0%
! GTTTTCTTGGTTCACTGTTG+TGG + chr3_2:78425306-78425325 Msa0427750:intron 40.0%
AGCTTGGATGATGATTCTTG+AGG + chr3_2:78425337-78425356 Msa0427750:intron 40.0%
TACCTTGCACAATCTGAGTT+CGG + chr3_2:78425374-78425393 Msa0427750:intron 40.0%
CTCTTCTATAAACATGCAGC+GGG - chr3_2:78425565-78425584 None:intergenic 40.0%
!! GTTTTGTTGCAGCCAATATG+TGG + chr3_2:78425754-78425773 Msa0427750:intron 40.0%
ACACTGCTATAGCCACATAT+TGG - chr3_2:78425769-78425788 None:intergenic 40.0%
!! GGTGGTTTGTTGTTACTGAT+TGG + chr3_2:78425988-78426007 Msa0427750:intron 40.0%
!! ATGGCTTTGTTGCCTTTGTT+TGG + chr3_2:78426137-78426156 Msa0427750:intron 40.0%
!! TGGCTTTGTTGCCTTTGTTT+GGG + chr3_2:78426138-78426157 Msa0427750:intron 40.0%
! GTTGCCTTTGTTTGGGTATA+TGG + chr3_2:78426145-78426164 Msa0427750:intron 40.0%
!! GATTAGCCTTATTGGCTTTG+TGG + chr3_2:78426241-78426260 Msa0427750:intron 40.0%
! TTATGTTAGCTTCTGCCCTA+TGG + chr3_2:78426320-78426339 Msa0427750:intron 40.0%
!! AAGAGTGCTTAACCACCATA+GGG - chr3_2:78426338-78426357 None:intergenic 40.0%
GCATAATGCTTAACCACCAT+AGG - chr3_2:78426384-78426403 None:intergenic 40.0%
TCTGTTAAGTGGTTAAGCCT+TGG + chr3_2:78426431-78426450 Msa0427750:intron 40.0%
GTCTGGACATTGTTTGGATA+TGG + chr3_2:78426606-78426625 Msa0427750:intron 40.0%
ACTCTTATACTGTGTTGGAG+GGG + chr3_2:78426647-78426666 Msa0427750:intron 40.0%
ATAGCACTCACAAACGACAA+AGG - chr3_2:78426696-78426715 None:intergenic 40.0%
ATGAACATCCACTCCATAAC+AGG - chr3_2:78426748-78426767 None:intergenic 40.0%
CTTCATACAAGGAACGTTGA+AGG - chr3_2:78426862-78426881 None:intergenic 40.0%
ATTGAAGAGCAACCTCTGTT+TGG + chr3_2:78426882-78426901 Msa0427750:intron 40.0%
AAGAGAAAGCTTCCAAACAG+AGG - chr3_2:78426897-78426916 None:intergenic 40.0%
GTTCTCTTACCTTGAGTTTG+AGG + chr3_2:78426981-78427000 Msa0427750:intron 40.0%
TCAGCACTCACTAAAACAAG+GGG - chr3_2:78427241-78427260 None:intergenic 40.0%
GTCAGCACTCACTAAAACAA+GGG - chr3_2:78427242-78427261 None:intergenic 40.0%
TGTCAGCACTCACTAAAACA+AGG - chr3_2:78427243-78427262 None:intergenic 40.0%
!!! TTGTTTTAGTGAGTGCTGAC+AGG + chr3_2:78427242-78427261 Msa0427750:three_prime_UTR 40.0%
!! GAGATAATGGGTTGAAAGCG+AGG - chr3_2:78420731-78420750 None:intergenic 45.0%
TCGAATTATGCAAGTGGCTG+TGG + chr3_2:78421091-78421110 Msa0427750:intron 45.0%
CTCCTTATCACGCATTCCAA+AGG - chr3_2:78421278-78421297 None:intergenic 45.0%
!!! GGTTTTAGGGGTGAAAGAAG+TGG + chr3_2:78421766-78421785 Msa0427750:intron 45.0%
! AGATACTGTTTTACCGCTCG+TGG + chr3_2:78422394-78422413 Msa0427750:intron 45.0%
CGCATCCTCACAGTTCAATT+AGG + chr3_2:78423037-78423056 Msa0427750:intron 45.0%
TTAGATGGGGGAAAATGCAC+AGG - chr3_2:78423344-78423363 None:intergenic 45.0%
TTTGCAGCGACAAAAAGCAG+TGG - chr3_2:78423497-78423516 None:intergenic 45.0%
!!! ACTGCTTTTTGTCGCTGCAA+AGG + chr3_2:78423496-78423515 Msa0427750:CDS 45.0%
GTGATGCCACTGTTTAACAG+AGG - chr3_2:78423559-78423578 None:intergenic 45.0%
CATTCCATTCTGATCCTGCA+AGG - chr3_2:78423809-78423828 None:intergenic 45.0%
GGGAGCTGAGAAGGAAATAA+TGG - chr3_2:78423885-78423904 None:intergenic 45.0%
GAAATACATGGGAGCTGAGA+AGG - chr3_2:78423894-78423913 None:intergenic 45.0%
! TGTTTTCCCTTACACACAGG+AGG + chr3_2:78424117-78424136 Msa0427750:intron 45.0%
CTTCTTCCTCCTGTGTGTAA+GGG - chr3_2:78424126-78424145 None:intergenic 45.0%
! GGTCTGAATGCAGAGTTTTG+TGG + chr3_2:78424254-78424273 Msa0427750:three_prime_UTR 45.0%
GGATGCCATGTTTCTCAACA+TGG + chr3_2:78424496-78424515 Msa0427750:intron 45.0%
GGTTTCCCTTTCTTTGTCCT+CGG + chr3_2:78424656-78424675 Msa0427750:intron 45.0%
! ACTGATTTCAGTGTTGCGGT+TGG + chr3_2:78425155-78425174 Msa0427750:intron 45.0%
!!! TCAGTGTTGCGGTTGGTTTT+CGG + chr3_2:78425162-78425181 Msa0427750:intron 45.0%
CTTGGTTCACTGTTGTGGTT+TGG + chr3_2:78425311-78425330 Msa0427750:intron 45.0%
AACCGAACTCAGATTGTGCA+AGG - chr3_2:78425379-78425398 None:intergenic 45.0%
CTGCTGCGAGTGCTAATATA+TGG + chr3_2:78425671-78425690 Msa0427750:intron 45.0%
AGACTACACAGTGAAGCTTC+AGG + chr3_2:78425839-78425858 Msa0427750:intron 45.0%
! CTCTAGTTCCTGTCCACATA+AGG + chr3_2:78426108-78426127 Msa0427750:intron 45.0%
! ATATGCAGCCTTATGTGGAC+AGG - chr3_2:78426119-78426138 None:intergenic 45.0%
TGTCCACATAAGGCTGCATA+TGG + chr3_2:78426118-78426137 Msa0427750:intron 45.0%
! AAGCCATATGCAGCCTTATG+TGG - chr3_2:78426124-78426143 None:intergenic 45.0%
AGCTCACCACAAAGCCAATA+AGG - chr3_2:78426250-78426269 None:intergenic 45.0%
TGGTGAGCTTCTGTCTATGA+TGG + chr3_2:78426261-78426280 Msa0427750:intron 45.0%
CACGATGCTTCTGTCATAGA+TGG + chr3_2:78426289-78426308 Msa0427750:intron 45.0%
!! GAAGAGTGCTTAACCACCAT+AGG - chr3_2:78426339-78426358 None:intergenic 45.0%
AGTGGTTAAGCCTTGGATTG+TGG + chr3_2:78426438-78426457 Msa0427750:intron 45.0%
TAAGCAGAAGCCACAATCCA+AGG - chr3_2:78426451-78426470 None:intergenic 45.0%
GGATTGTGGCTTCTGCTTAA+TGG + chr3_2:78426452-78426471 Msa0427750:intron 45.0%
! AGTGGTTAAGCCTTGAGTTG+TGG + chr3_2:78426522-78426541 Msa0427750:intron 45.0%
TAAGCAGAAGCCACAACTCA+AGG - chr3_2:78426535-78426554 None:intergenic 45.0%
GAGTTGTGGCTTCTGCTTAA+TGG + chr3_2:78426536-78426555 Msa0427750:intron 45.0%
! TCAGTTTTTCTGCCAGTGTC+TGG + chr3_2:78426589-78426608 Msa0427750:intron 45.0%
TCCAAACAATGTCCAGACAC+TGG - chr3_2:78426604-78426623 None:intergenic 45.0%
ACTGTGTTGGAGGGGTTATA+TGG + chr3_2:78426655-78426674 Msa0427750:intron 45.0%
TTGGAGGGGTTATATGGACA+AGG + chr3_2:78426661-78426680 Msa0427750:intron 45.0%
ATTTGCCTTGCATGCACCAT+TGG + chr3_2:78426716-78426735 Msa0427750:intron 45.0%
!! CCATAACAGGAAGGTACCAA+TGG - chr3_2:78426735-78426754 None:intergenic 45.0%
CCATTGGTACCTTCCTGTTA+TGG + chr3_2:78426732-78426751 Msa0427750:intron 45.0%
ACATCCACTCCATAACAGGA+AGG - chr3_2:78426744-78426763 None:intergenic 45.0%
GAGTGGATGTTCATACTTGC+TGG + chr3_2:78426754-78426773 Msa0427750:intron 45.0%
! TGGATGTTCATACTTGCTGG+AGG + chr3_2:78426757-78426776 Msa0427750:intron 45.0%
ACAAGGAACGTTGAAGGAGA+GGG - chr3_2:78426856-78426875 None:intergenic 45.0%
TACAAGGAACGTTGAAGGAG+AGG - chr3_2:78426857-78426876 None:intergenic 45.0%
TCTTACCTTGAGTTTGAGGG+AGG + chr3_2:78426985-78427004 Msa0427750:intron 45.0%
AAATTGAAGTCTCGGGGAGG+AGG - chr3_2:78420645-78420664 None:intergenic 50.0%
GGAAAATTGAAGTCTCGGGG+AGG - chr3_2:78420648-78420667 None:intergenic 50.0%
AGTGAGAACGATGAGAAGCG+TGG - chr3_2:78420695-78420714 None:intergenic 50.0%
! GGTAGTGGCGTAGGAATTTG+AGG - chr3_2:78420905-78420924 None:intergenic 50.0%
TACGCCACTACCTAAACCAC+CGG + chr3_2:78420913-78420932 Msa0427750:CDS 50.0%
TCATCTACGACGAAACCAGC+CGG - chr3_2:78420935-78420954 None:intergenic 50.0%
GGTTTCGTCGTAGATGACAC+TGG + chr3_2:78420938-78420957 Msa0427750:CDS 50.0%
TCCTGCGAACAACCTTCCTT+TGG + chr3_2:78421259-78421278 Msa0427750:CDS 50.0%
TCCAAAGGAAGGTTGTTCGC+AGG - chr3_2:78421263-78421282 None:intergenic 50.0%
!!! GGTTTTAGGGGTGAAAGACG+CGG + chr3_2:78421414-78421433 Msa0427750:intron 50.0%
!! TACAGAGCACAGGTGATGGA+TGG + chr3_2:78421608-78421627 Msa0427750:CDS 50.0%
! CAATGGTTGGCTGTGAAGCA+TGG - chr3_2:78421938-78421957 None:intergenic 50.0%
GCAAGTGCAAAAGAAGCAGC+AGG - chr3_2:78422252-78422271 None:intergenic 50.0%
! TACTGTTTTACCGCTCGTGG+CGG + chr3_2:78422397-78422416 Msa0427750:CDS 50.0%
GTAACAAAAACCGCCACGAG+CGG - chr3_2:78422410-78422429 None:intergenic 50.0%
ATCGCCATCAGAGAGTTCAG+AGG - chr3_2:78422744-78422763 None:intergenic 50.0%
! AGATGATGGCTTGGCAACTG+AGG + chr3_2:78422947-78422966 Msa0427750:CDS 50.0%
! GATGATGGCTTGGCAACTGA+GGG + chr3_2:78422948-78422967 Msa0427750:CDS 50.0%
TCCCCACTCATTACAGAGTC+TGG + chr3_2:78423859-78423878 Msa0427750:CDS 50.0%
GCCAGACTCTGTAATGAGTG+GGG - chr3_2:78423863-78423882 None:intergenic 50.0%
GGCCAGACTCTGTAATGAGT+GGG - chr3_2:78423864-78423883 None:intergenic 50.0%
TGGCCAGACTCTGTAATGAG+TGG - chr3_2:78423865-78423884 None:intergenic 50.0%
TCTATGGCGCTAATGACAGC+AGG - chr3_2:78424000-78424019 None:intergenic 50.0%
GCTTCTTCCTCCTGTGTGTA+AGG - chr3_2:78424127-78424146 None:intergenic 50.0%
CAACAGTGAGTCAAGGAGTG+CGG - chr3_2:78424149-78424168 None:intergenic 50.0%
GCACTCCTTGACTCACTGTT+GGG + chr3_2:78424148-78424167 Msa0427750:CDS 50.0%
ATCAGGATTGCCCCACTGTT+GGG + chr3_2:78424233-78424252 Msa0427750:three_prime_UTR 50.0%
TGCATTCAGACCCAACAGTG+GGG - chr3_2:78424246-78424265 None:intergenic 50.0%
CTGCATTCAGACCCAACAGT+GGG - chr3_2:78424247-78424266 None:intergenic 50.0%
TCTGCATTCAGACCCAACAG+TGG - chr3_2:78424248-78424267 None:intergenic 50.0%
TTTGCGTTCGACGATGTCGA+CGG + chr3_2:78425232-78425251 Msa0427750:intron 50.0%
GCGGGAGTTGTTCTTGTTCT+AGG + chr3_2:78425279-78425298 Msa0427750:intron 50.0%
! GGTTCACTGTTGTGGTTTGG+TGG + chr3_2:78425314-78425333 Msa0427750:intron 50.0%
!! TGTTGTGGTTTGGTGGAGCT+TGG + chr3_2:78425321-78425340 Msa0427750:intron 50.0%
! TGTTAGCTTCTGCCCTATGG+TGG + chr3_2:78426323-78426342 Msa0427750:intron 50.0%
GCCAGTGTCTGGACATTGTT+TGG + chr3_2:78426600-78426619 Msa0427750:intron 50.0%
AGGTACCAATGGTGCATGCA+AGG - chr3_2:78426724-78426743 None:intergenic 50.0%
GGTACCTTCCTGTTATGGAG+TGG + chr3_2:78426737-78426756 Msa0427750:intron 50.0%
AACAGCCTCCCTCAAACTCA+AGG - chr3_2:78426993-78427012 None:intergenic 50.0%
! GGTGGTTTAGGTAGTGGCGT+AGG - chr3_2:78420914-78420933 None:intergenic 55.0%
ACGAAACCAGCCGGTGGTTT+AGG - chr3_2:78420926-78420945 None:intergenic 55.0%
! AGAAGGGACAGGCTCTGACT+AGG - chr3_2:78422690-78422709 None:intergenic 55.0%
GTGGCTTCGAAACCAAAGCG+AGG - chr3_2:78422722-78422741 None:intergenic 55.0%
GCCACCTCTGAACTCTCTGA+TGG + chr3_2:78422737-78422756 Msa0427750:intron 55.0%
GCCATCAGAGAGTTCAGAGG+TGG - chr3_2:78422741-78422760 None:intergenic 55.0%
CGCACTCCTTGACTCACTGT+TGG + chr3_2:78424147-78424166 Msa0427750:CDS 55.0%
CATCAGGATTGCCCCACTGT+TGG + chr3_2:78424232-78424251 Msa0427750:three_prime_UTR 55.0%
TCTCTCTCGCTTCTGCCCTA+TGG + chr3_2:78426365-78426384 Msa0427750:intron 55.0%
TGAAGTCTCGGGGAGGAGGA+AGG - chr3_2:78420641-78420660 None:intergenic 60.0%
CCAGCCGGTGGTTTAGGTAG+TGG - chr3_2:78420920-78420939 None:intergenic 60.0%
CCACTACCTAAACCACCGGC+TGG + chr3_2:78420917-78420936 Msa0427750:CDS 60.0%
TCTACGACGAAACCAGCCGG+TGG - chr3_2:78420932-78420951 None:intergenic 60.0%
! GCGTAGTGTTGGGTCACGAG+AGG - chr3_2:78421501-78421520 None:intergenic 60.0%
CTCTCGCTTCTGCCCTATGG+TGG + chr3_2:78426368-78426387 Msa0427750:intron 60.0%
GCGTTCGACGATGTCGACGG+TGG + chr3_2:78425235-78425254 Msa0427750:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78420576 78427381 78420576 ID=Msa0427750;Name=Msa0427750
chr3_2 mRNA 78420576 78427381 78420576 ID=Msa0427750-mRNA-1;Parent=Msa0427750;Name=Msa0427750-mRNA-1;_AED=0.17;_eAED=0.17;_QI=29|0.9|0.90|1|0.9|0.81|11|337|334
chr3_2 exon 78420576 78421000 78420576 ID=Msa0427750-mRNA-1:exon:20729;Parent=Msa0427750-mRNA-1
chr3_2 exon 78421254 78421351 78421254 ID=Msa0427750-mRNA-1:exon:20730;Parent=Msa0427750-mRNA-1
chr3_2 exon 78421594 78421636 78421594 ID=Msa0427750-mRNA-1:exon:20731;Parent=Msa0427750-mRNA-1
chr3_2 exon 78422219 78422301 78422219 ID=Msa0427750-mRNA-1:exon:20732;Parent=Msa0427750-mRNA-1
chr3_2 exon 78422396 78422460 78422396 ID=Msa0427750-mRNA-1:exon:20733;Parent=Msa0427750-mRNA-1
chr3_2 exon 78422940 78422995 78422940 ID=Msa0427750-mRNA-1:exon:20734;Parent=Msa0427750-mRNA-1
chr3_2 exon 78423458 78423517 78423458 ID=Msa0427750-mRNA-1:exon:20735;Parent=Msa0427750-mRNA-1
chr3_2 exon 78423814 78423906 78423814 ID=Msa0427750-mRNA-1:exon:20736;Parent=Msa0427750-mRNA-1
chr3_2 exon 78423982 78424047 78423982 ID=Msa0427750-mRNA-1:exon:20737;Parent=Msa0427750-mRNA-1
chr3_2 exon 78424136 78424328 78424136 ID=Msa0427750-mRNA-1:exon:20738;Parent=Msa0427750-mRNA-1
chr3_2 exon 78427193 78427381 78427193 ID=Msa0427750-mRNA-1:exon:20739;Parent=Msa0427750-mRNA-1
chr3_2 five_prime_UTR 78420576 78420604 78420576 ID=Msa0427750-mRNA-1:five_prime_utr;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78420605 78421000 78420605 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78421254 78421351 78421254 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78421594 78421636 78421594 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78422219 78422301 78422219 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78422396 78422460 78422396 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78422940 78422995 78422940 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78423458 78423517 78423458 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78423814 78423906 78423814 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78423982 78424047 78423982 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 CDS 78424136 78424180 78424136 ID=Msa0427750-mRNA-1:cds;Parent=Msa0427750-mRNA-1
chr3_2 three_prime_UTR 78424181 78424328 78424181 ID=Msa0427750-mRNA-1:three_prime_utr;Parent=Msa0427750-mRNA-1
chr3_2 three_prime_UTR 78427193 78427381 78427193 ID=Msa0427750-mRNA-1:three_prime_utr;Parent=Msa0427750-mRNA-1
Gene Sequence

>Msa0427750

ATGGCGGCACAGTTACAAACCTTGAATGTTTATCCTTCCTCCTCCCCGAGACTTCAATTTTCCTTTCCTCATTCAACACTCAATCAACCACGCTTCTCATCGTTCTCACTTCGAATTCGAAACCCTCGCTTTCAACCCATTATCTCTAGCGCTTCCAATGTTCAACCAAAGAAGCATTCTCCTTCTTCATCCACCAGAAACAAAAACCCAAAAAACAACAATGATAAGAAGAAGAAGAATAACAACAAGAGTAATGGTGAAATTGGTGATTCCAATTCCATTTCCAATTCTTCTCTGCCTCAAATTCCTACGCCACTACCTAAACCACCGGCTGGTTTCGTCGTAGATGACACTGGCAAGCTTCTTACTTCTTCAATGGACCGACTTGCCACACTTGTTGATCCTGCGAACAACCTTCCTTTGGAATGCGTGATAAGGAGAATATTCACAAGTTCTCGAGGAGATGATTGTATGTTGCTATGCCCACTTGACATGCCTATACAAATATTACAGAGCACAGGTGATGGATGGTCAGAAGTCAGTTACGAGGAGCTTGAGTCTCTTCTGCCTGCTGCTTCTTTTGCACTTGCCAAATTACGAATGCATCTGATTTATAGTGGATACTGTTTTACCGCTCGTGGCGGTTTTTGTTACTCAGAAGAAGACATCTTTGACTTTCATGCAGATGGTAAAGATGATGGCTTGGCAACTGAGGGTGTAGAAATCACACACTTCAATCAGGAAGCAGCGCACTACATGATATATACACCATCTGATCCACTGCTTTTTGTCGCTGCAAAGGATCAGAATGGAATGCTACAAATCGCTGATGATGTAAGTAGGCACTCCCCACTCATTACAGAGTCTGGCCATTATTTCCTTCTCAGCTCCCATGAATTGCTTGAGGATCCTGCTGTCATTAGCGCCATAGATGAAGAGACTGAATTTAATGCCTTGGTGGAGGAAGAAGCCGCACTCCTTGACTCACTGTTGGGTAAAAGATAA

Protein sequence

>Msa0427750

MAAQLQTLNVYPSSSPRLQFSFPHSTLNQPRFSSFSLRIRNPRFQPIISSASNVQPKKHSPSSSTRNKNPKNNNDKKKKNNNKSNGEIGDSNSISNSSLPQIPTPLPKPPAGFVVDDTGKLLTSSMDRLATLVDPANNLPLECVIRRIFTSSRGDDCMLLCPLDMPIQILQSTGDGWSEVSYEELESLLPAASFALAKLRMHLIYSGYCFTARGGFCYSEEDIFDFHADGKDDGLATEGVEITHFNQEAAHYMIYTPSDPLLFVAAKDQNGMLQIADDVSRHSPLITESGHYFLLSSHELLEDPAVISAIDEETEFNALVEEEAALLDSLLGKR*