AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373130 MtrunA17_Chr3g0122151 98.715 389 5 0 1 389 194 582 0.0 800
Msa0373130 MtrunA17_Chr1g0190941 29.024 410 256 8 7 386 159 563 1.54e-50 178
Msa0373130 MtrunA17_Chr6g0466641 94.000 50 3 0 27 76 40 89 1.85e-27 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373130 AT4G14210.1 88.144 388 46 0 1 388 176 563 0.0 729
Msa0373130 AT4G14210.3 88.144 388 46 0 1 388 176 563 0.0 729
Msa0373130 AT4G14210.2 88.144 388 46 0 1 388 176 563 0.0 729
Msa0373130 AT3G04870.3 28.329 413 261 8 7 389 144 551 3.05e-49 175
Msa0373130 AT3G04870.1 28.329 413 261 8 7 389 144 551 3.05e-49 175
Msa0373130 AT3G04870.4 28.329 413 261 8 7 389 144 551 3.05e-49 175
Msa0373130 AT3G04870.2 28.329 413 261 8 7 389 144 551 3.05e-49 175

Find 137 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGGTGCTGTTCTTTC+TGG 0.035606 3_1:-72153291 Msa0373130:CDS
TGCATAAATTTAAAAGAAAA+AGG 0.170173 3_1:+72152499 None:intergenic
CCTAATGTGCAGAACCTATT+TGG 0.185482 3_1:-72157288 Msa0373130:five_prime_UTR
CCAAATAGGTTCTGCACATT+AGG 0.214847 3_1:+72157288 None:intergenic
ACAAGATTTGAAGAAAATTC+TGG 0.216400 3_1:-72152781 Msa0373130:three_prime_UTR
GGACGACACGGTTCACAATT+TGG 0.225775 3_1:+72153384 None:intergenic
GAATGTCAAAACCAGGAATA+TGG 0.236690 3_1:-72156425 Msa0373130:intron
CATCAGGGTTGATGAAGTTT+AGG 0.247509 3_1:+72155476 None:intergenic
TTCTCCAATCTCTGGAAATA+AGG 0.270191 3_1:+72154851 None:intergenic
CAGGTTCCCGACAAATATTT+AGG 0.277509 3_1:-72152663 Msa0373130:three_prime_UTR
GTCCTTCCATCTCCGTTAAA+TGG 0.287399 3_1:-72157165 Msa0373130:intron
ATTGGCATACAAAGTCTTTC+AGG 0.290671 3_1:+72155164 None:intergenic
CTTGTCAACTGCAAAGTATT+TGG 0.292863 3_1:-72158331 Msa0373130:five_prime_UTR
TGCTTTAAACCGATTTCTTC+AGG 0.303456 3_1:-72155428 Msa0373130:intron
CATGGCTACAAAGAAAATAA+AGG 0.325248 3_1:+72152572 None:intergenic
ATCAGGGTTGATGAAGTTTA+GGG 0.330792 3_1:+72155477 None:intergenic
TAATACCGAGTTCTCCAAAT+AGG 0.340651 3_1:+72157274 None:intergenic
AAATAGTCAACATGATATTA+TGG 0.341783 3_1:+72158450 None:intergenic
TGTTGATCATATTAAGTCCT+TGG 0.349779 3_1:-72155141 Msa0373130:CDS
CATTGCATTGAAAGTTCATC+AGG 0.356309 3_1:+72155460 None:intergenic
AACGGAGATGGAAGGACTTC+GGG 0.360693 3_1:+72157171 None:intergenic
GGTTCCTTATTTCCAGAGAT+TGG 0.362086 3_1:-72154855 Msa0373130:CDS
TGGAAGGTGCTGTTCTTTCT+GGG 0.364685 3_1:-72153290 Msa0373130:CDS
TTACAAAGATCTCCTATAGA+AGG 0.366307 3_1:-72153360 Msa0373130:CDS
GAGAAAATCAAATTTGCAAT+TGG 0.368454 3_1:-72156366 Msa0373130:CDS
TCTCTTGCCTCCAGCAATAT+AGG 0.371739 3_1:+72158291 None:intergenic
AGCTTCTTCTTCCTGAGAAC+TGG 0.374557 3_1:-72154883 Msa0373130:CDS
CAGAGATTGGAGAAATTAGT+TGG 0.375058 3_1:-72154842 Msa0373130:CDS
TCTTACAACTTACCATTTAA+CGG 0.376250 3_1:+72157153 None:intergenic
TCATATCAACTTTGAGGACT+TGG 0.379367 3_1:-72152742 Msa0373130:three_prime_UTR
TGTCGGCATATACACTTAGA+AGG 0.381014 3_1:+72154039 None:intergenic
ATAGAAGGTTTCTATTTAGC+TGG 0.382408 3_1:-72153345 Msa0373130:CDS
AGGGCTCACATTTCATGTAT+TGG 0.386920 3_1:+72152592 None:intergenic
TAATACTTGTGTGCGAGCTT+TGG 0.389171 3_1:-72158411 Msa0373130:five_prime_UTR
CAAATAGGTTCTGCACATTA+GGG 0.391703 3_1:+72157289 None:intergenic
AGGTTCCCGACAAATATTTA+GGG 0.393381 3_1:-72152662 Msa0373130:three_prime_UTR
GCTAAATAGAAACCTTCTAT+AGG 0.394425 3_1:+72153348 None:intergenic
TCCAGCTATGCTTGGTGGAC+AGG 0.394576 3_1:-72156337 Msa0373130:CDS
CTGGAGGCAAGAGATGTTCT+AGG 0.395758 3_1:-72158282 Msa0373130:five_prime_UTR
CCGACAAATATTTAGGGAAA+AGG 0.396111 3_1:-72152656 Msa0373130:three_prime_UTR
AGCTCCAACATAGACTGGTT+TGG 0.397906 3_1:+72153696 None:intergenic
AATTTCATCAGGGAAGAGTT+TGG 0.406914 3_1:+72153599 None:intergenic
GTTGATCATATTAAGTCCTT+GGG 0.407750 3_1:-72155140 Msa0373130:CDS
GCTCCAACATAGACTGGTTT+GGG 0.410701 3_1:+72153697 None:intergenic
TAATATAATTTCAAATGAAA+AGG 0.412633 3_1:-72158475 Msa0373130:five_prime_UTR
TGGTCTGCAGAAATTTCATC+AGG 0.414527 3_1:+72153588 None:intergenic
TTCTGGGAAGCTTTGTGCAC+AGG 0.415482 3_1:-72153274 Msa0373130:CDS
GTTGACAAGCCAGCCAGTCC+TGG 0.418503 3_1:+72158345 None:intergenic
CAACTAATTTCTCCAATCTC+TGG 0.419741 3_1:+72154843 None:intergenic
TTTGCTATGCCAAGCAAGCC+TGG 0.419808 3_1:-72157216 Msa0373130:CDS
CAAATTATCCCAGGACTGGC+TGG 0.420113 3_1:-72158354 Msa0373130:five_prime_UTR
TTCTTCCTGAGAACTGGAAA+GGG 0.422658 3_1:-72154877 Msa0373130:CDS
TTCGGAGCTACTTGCTGCTC+GGG 0.427072 3_1:-72152844 Msa0373130:CDS
ATGATCACCTTCTCTTTAGC+AGG 0.428507 3_1:-72154288 Msa0373130:intron
CAAGATTTGAAGAAAATTCT+GGG 0.434521 3_1:-72152780 Msa0373130:three_prime_UTR
GCCTGTCCACCAAGCATAGC+TGG 0.434812 3_1:+72156336 None:intergenic
GGACTTCTTCCAGCTATGCT+TGG 0.441227 3_1:-72156345 Msa0373130:CDS
CAAAGAATGGATGAGAAAAC+AGG 0.441574 3_1:-72156283 Msa0373130:intron
ATGGCTACAAAGAAAATAAA+GGG 0.441842 3_1:+72152573 None:intergenic
TTCTATAGGAGATCTTTGTA+AGG 0.454623 3_1:+72153362 None:intergenic
GGAACCCCTTTCCAGTTCTC+AGG 0.455491 3_1:+72154872 None:intergenic
ACTTCATCAGTTACACGTTC+AGG 0.456230 3_1:+72155520 None:intergenic
TGGTCACAAGCCTATATTGC+TGG 0.460096 3_1:-72158301 Msa0373130:five_prime_UTR
CATATCAACTTTGAGGACTT+GGG 0.460746 3_1:-72152741 Msa0373130:three_prime_UTR
CTTCTTCCAGCTATGCTTGG+TGG 0.472514 3_1:-72156342 Msa0373130:CDS
AACTTACCATTTAACGGAGA+TGG 0.472864 3_1:+72157159 None:intergenic
ATGATCGCACCTGAAGAAAT+CGG 0.473348 3_1:+72155419 None:intergenic
CGTAGTGACGAAGATATTAT+CGG 0.474484 3_1:-72153642 Msa0373130:CDS
CAGTCATAAATGTTCACATA+TGG 0.481049 3_1:-72154814 Msa0373130:intron
GACTTAATATGATCAACAAT+TGG 0.481712 3_1:+72155146 None:intergenic
ATGGTATTTCTGTCAAAGAA+TGG 0.490346 3_1:-72156296 Msa0373130:CDS
ATTCGGAGCTACTTGCTGCT+CGG 0.494416 3_1:-72152845 Msa0373130:CDS
CGACATGTCAGTAACTTGTA+AGG 0.497117 3_1:-72154021 Msa0373130:intron
AATTGATAAAGTGACTCAAA+TGG 0.498942 3_1:+72152696 None:intergenic
TTGGCATACAAAGTCTTTCA+GGG 0.499721 3_1:+72155165 None:intergenic
GGAGCATCATATCAACTTTG+AGG 0.501921 3_1:-72152748 Msa0373130:three_prime_UTR
GCAAAGTATTTGGCAGATGC+TGG 0.502628 3_1:-72158321 Msa0373130:five_prime_UTR
TTATCAATTCATACGAAGAC+AGG 0.503878 3_1:-72152682 Msa0373130:three_prime_UTR
GAAAATTCTGGGAAGAGTAC+AGG 0.507260 3_1:-72152769 Msa0373130:three_prime_UTR
TAACGGAGATGGAAGGACTT+CGG 0.507431 3_1:+72157170 None:intergenic
CTAAACTCTCCAGGCTTGCT+TGG 0.507606 3_1:+72157207 None:intergenic
AATGTCAAAACCAGGAATAT+GGG 0.509571 3_1:-72156424 Msa0373130:intron
CGTGAAATCCATTCTTCGGC+TGG 0.510478 3_1:+72153663 None:intergenic
ACTAATGGGAAGGTGATTGA+AGG 0.510915 3_1:-72155041 Msa0373130:CDS
CTTCTTCCTGAGAACTGGAA+AGG 0.513099 3_1:-72154878 Msa0373130:CDS
TTGTGCACAGGCTATTGTAC+AGG 0.515353 3_1:-72153262 Msa0373130:intron
ACTACGTGAAATCCATTCTT+CGG 0.523388 3_1:+72153659 None:intergenic
CATATGTGAACATTTATGAC+TGG 0.523869 3_1:+72154815 None:intergenic
TCAAATCGACTAAACTCTCC+AGG 0.527394 3_1:+72157198 None:intergenic
GAGAACTCGGTATTAATGAT+CGG 0.535933 3_1:-72157266 Msa0373130:five_prime_UTR
CTAATGGGAAGGTGATTGAA+GGG 0.538438 3_1:-72155040 Msa0373130:CDS
AAACCAGTCTATGTTGGAGC+TGG 0.540788 3_1:-72153694 Msa0373130:CDS
TTGACAAGCCAGCCAGTCCT+GGG 0.544359 3_1:+72158346 None:intergenic
GCTTATGTGTCTGCAGCACC+AGG 0.544521 3_1:-72155014 Msa0373130:intron
TAATGATCGGTTACAATGGA+AGG 0.545218 3_1:-72157253 Msa0373130:five_prime_UTR
AAATATTTAGCTTCTATGGA+AGG 0.551139 3_1:-72153306 Msa0373130:CDS
CAGGAATATGGGCAATCTTG+AGG 0.552469 3_1:-72156413 Msa0373130:CDS
GGAGAAGCATGGTTCTAAGA+TGG 0.554962 3_1:-72155207 Msa0373130:CDS
ATATCAACTTTGAGGACTTG+GGG 0.555063 3_1:-72152740 Msa0373130:three_prime_UTR
GGAAAGATGAAGATGGAGAC+TGG 0.557017 3_1:-72157960 Msa0373130:five_prime_UTR
CAGAACCTATTTGGAGAACT+CGG 0.557140 3_1:-72157279 Msa0373130:five_prime_UTR
AAACCAGCTCCAACATAGAC+TGG 0.564256 3_1:+72153691 None:intergenic
AAGAGATGTTCTAGGTGGAA+AGG 0.566226 3_1:-72158274 Msa0373130:intron
GTGATATGATATTACAAGCA+TGG 0.569030 3_1:+72152554 None:intergenic
GATGGAGACTGGTATGAGAC+GGG 0.571471 3_1:-72157949 Msa0373130:five_prime_UTR
TAACCCAAACCAGTCTATGT+TGG 0.572520 3_1:-72153700 Msa0373130:CDS
GGAATAATGAGATGCTGACC+TGG 0.581967 3_1:-72156392 Msa0373130:CDS
AAGATGGACTTCACCGCCCA+AGG 0.583196 3_1:+72155124 None:intergenic
TGAACTTACAGAATATATGT+AGG 0.585494 3_1:+72157926 None:intergenic
TTTGGCAAGTTCAGACATTG+TGG 0.590839 3_1:+72153617 None:intergenic
GTATTAATGATCGGTTACAA+TGG 0.600999 3_1:-72157257 Msa0373130:five_prime_UTR
CTTACAAGTTACTGACATGT+CGG 0.601594 3_1:+72154022 None:intergenic
TAATGGGAAGGTGATTGAAG+GGG 0.601605 3_1:-72155039 Msa0373130:CDS
TCTTCCTGAGAACTGGAAAG+GGG 0.602104 3_1:-72154876 Msa0373130:CDS
ATTCTTCAATAGGAGAAGCA+TGG 0.604122 3_1:-72155218 Msa0373130:intron
GCGTATGTTGAGGCTCAAGA+TGG 0.605964 3_1:-72156315 Msa0373130:CDS
AGATGGAGACTGGTATGAGA+CGG 0.606492 3_1:-72157950 Msa0373130:five_prime_UTR
AAGAAAACCTGCTAAAGAGA+AGG 0.606943 3_1:+72154281 None:intergenic
TCTATAGGAGATCTTTGTAA+GGG 0.608471 3_1:+72153363 None:intergenic
TACCATTTAACGGAGATGGA+AGG 0.609350 3_1:+72157163 None:intergenic
GGCATACAAAGTCTTTCAGG+GGG 0.615499 3_1:+72155167 None:intergenic
GATCATATTAAGTCCTTGGG+CGG 0.620960 3_1:-72155137 Msa0373130:CDS
ACCACGTTGTTAAAACACCA+AGG 0.621505 3_1:-72153542 Msa0373130:intron
GTCGGCATATACACTTAGAA+GGG 0.623948 3_1:+72154040 None:intergenic
TATCAACTTTGAGGACTTGG+GGG 0.628380 3_1:-72152739 Msa0373130:three_prime_UTR
GCTGCATGGAAAGATGAAGA+TGG 0.631551 3_1:-72157967 Msa0373130:five_prime_UTR
ATTGCATTGAAAGTTCATCA+GGG 0.637076 3_1:+72155461 None:intergenic
TCGGAGCTACTTGCTGCTCG+GGG 0.645359 3_1:-72152843 Msa0373130:CDS
AGTGTTCATAGCAATGTCAA+AGG 0.649142 3_1:-72155500 Msa0373130:CDS
TGGCATACAAAGTCTTTCAG+GGG 0.649367 3_1:+72155166 None:intergenic
GGTCTGCAGAAATTTCATCA+GGG 0.663327 3_1:+72153589 None:intergenic
TGGTGGACAGGCGTATGTTG+AGG 0.664600 3_1:-72156325 Msa0373130:CDS
TCGGCATATACACTTAGAAG+GGG 0.674282 3_1:+72154041 None:intergenic
TCACAAGCCTATATTGCTGG+AGG 0.676636 3_1:-72158298 Msa0373130:five_prime_UTR
GATCTTTGTAAGGGACGACA+CGG 0.692042 3_1:+72153372 None:intergenic
GAGGCAAGAGATGTTCTAGG+TGG 0.699892 3_1:-72158279 Msa0373130:five_prime_UTR
GCATACAAAGTCTTTCAGGG+GGG 0.727840 3_1:+72155168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAATTTCAAATGAAA+AGG - chr3_1:72152503-72152522 Msa0373130:three_prime_UTR 10.0%
!!! AGTTATACTAAAATTTTAAA+TGG + chr3_1:72154198-72154217 None:intergenic 10.0%
!!! ATTTGAATTTTAATGATAAA+AGG + chr3_1:72154947-72154966 None:intergenic 10.0%
!! CAAAATATTTAACAAAAAAT+TGG + chr3_1:72156240-72156259 None:intergenic 10.0%
!!! CAATTTTTTGTTAAATATTT+TGG - chr3_1:72156238-72156257 Msa0373130:intron 10.0%
!! CTTGAATTATTAAATTACTT+AGG + chr3_1:72152843-72152862 None:intergenic 15.0%
!!! TGTTTTAAGAATTAATTTTC+CGG - chr3_1:72152867-72152886 Msa0373130:intron 15.0%
!! ATTCTAAATAAATGATTTAC+TGG - chr3_1:72153563-72153582 Msa0373130:CDS 15.0%
!!! ATTCAAAAACAAATTTTATC+AGG + chr3_1:72154097-72154116 None:intergenic 15.0%
!! ATTGTTTATTCCATATTATA+GGG - chr3_1:72155431-72155450 Msa0373130:CDS 15.0%
!! ATATTATTGAATTCTTCAAT+AGG - chr3_1:72155750-72155769 Msa0373130:intron 15.0%
!! ATTACTTTACAAATTGAAAT+AGG + chr3_1:72156462-72156481 None:intergenic 15.0%
!!! TTATTTCAGTTTTTTGTTAT+TGG - chr3_1:72157156-72157175 Msa0373130:intron 15.0%
!! GCATAAATTTAAAAGAAAAA+GGG + chr3_1:72158481-72158500 None:intergenic 15.0%
!! TGCATAAATTTAAAAGAAAA+AGG + chr3_1:72158482-72158501 None:intergenic 15.0%
!! AAATAGTCAACATGATATTA+TGG + chr3_1:72152531-72152550 None:intergenic 20.0%
!! ACAAATGAGATTAAATTAGT+CGG + chr3_1:72152734-72152753 None:intergenic 20.0%
!!! TCTGAAATTTAGTTCTTAAT+TGG + chr3_1:72153387-72153406 None:intergenic 20.0%
!! ATGCTAGTATTTAATCAATA+TGG - chr3_1:72153592-72153611 Msa0373130:CDS 20.0%
!! TATACTACATTTATAGTATG+TGG - chr3_1:72153978-72153997 Msa0373130:intron 20.0%
!! TTTAGTGTAAATGAAGAAAA+AGG - chr3_1:72154153-72154172 Msa0373130:intron 20.0%
!! ATCAATAGATTTATATTCCT+TGG - chr3_1:72154755-72154774 Msa0373130:intron 20.0%
!! AGCATGAAAATAAAGTAATA+TGG + chr3_1:72154986-72155005 None:intergenic 20.0%
!! TAAATTATGCACTAAAATTC+TGG - chr3_1:72155053-72155072 Msa0373130:CDS 20.0%
!!! AGAATAAATTTTATCAACCT+TGG - chr3_1:72155308-72155327 Msa0373130:intron 20.0%
!!! GAATAAATTTTATCAACCTT+GGG - chr3_1:72155309-72155328 Msa0373130:intron 20.0%
!! CATTGTTTATTCCATATTAT+AGG - chr3_1:72155430-72155449 Msa0373130:CDS 20.0%
!! CAAATGTAATATGAATGAAA+AGG + chr3_1:72155635-72155654 None:intergenic 20.0%
!!! AAAAGCTTTTTACTAACTAA+TGG - chr3_1:72155922-72155941 Msa0373130:intron 20.0%
!!! AAAGCTTTTTACTAACTAAT+GGG - chr3_1:72155923-72155942 Msa0373130:intron 20.0%
!! GCTATTAATTAATTGTTCAT+TGG - chr3_1:72156007-72156026 Msa0373130:intron 20.0%
!! AAAATTTGAATAGAAATCTG+CGG - chr3_1:72156312-72156331 Msa0373130:CDS 20.0%
!! TATTTACATATCAAATTTGC+AGG - chr3_1:72156642-72156661 Msa0373130:intron 20.0%
!! TGATTTAACACAAACATATA+CGG + chr3_1:72157078-72157097 None:intergenic 20.0%
!!! AAAAACTGAAATAATTTGTG+TGG + chr3_1:72157150-72157169 None:intergenic 20.0%
!!! ACAAAAATATTTAGCTTCTA+TGG - chr3_1:72157668-72157687 Msa0373130:intron 20.0%
!! AAATTCAGTTTGTAAGATAA+GGG + chr3_1:72157895-72157914 None:intergenic 20.0%
! AATCCAAAAGAAAAAGAAAG+AGG + chr3_1:72152593-72152612 None:intergenic 25.0%
!!! TTTGATTTTCAAATTATCCC+AGG - chr3_1:72152615-72152634 Msa0373130:three_prime_UTR 25.0%
! TTAAATTACTTAGGAACAGT+CGG + chr3_1:72152834-72152853 None:intergenic 25.0%
! TGAACTTACAGAATATATGT+AGG + chr3_1:72153055-72153074 None:intergenic 25.0%
!!! TTTTTTATCTCTCTTAGCAA+TGG + chr3_1:72153149-72153168 None:intergenic 25.0%
! AGAGATAAAAAAAGTGAAAC+TGG - chr3_1:72153157-72153176 Msa0373130:intron 25.0%
! AGAACTAAATTTCAGAAAGA+AGG - chr3_1:72153391-72153410 Msa0373130:CDS 25.0%
! TCTTACAACTTACCATTTAA+CGG + chr3_1:72153828-72153847 None:intergenic 25.0%
! TTAAAGAAACTTTCAACTTC+AGG + chr3_1:72153884-72153903 None:intergenic 25.0%
!!! AAAATAGAAGGTATTTCATG+TGG + chr3_1:72153908-72153927 None:intergenic 25.0%
! GTACGTGTTTAAAAAATAGA+AGG + chr3_1:72153920-72153939 None:intergenic 25.0%
!!! TCTATTTTTTAAACACGTAC+AGG - chr3_1:72153920-72153939 Msa0373130:intron 25.0%
! AGTATAACTAAATTGCTCTA+TGG - chr3_1:72154236-72154255 Msa0373130:intron 25.0%
! TGAAACAAGATGTGATAAAT+TGG - chr3_1:72154324-72154343 Msa0373130:intron 25.0%
! ATGTGAAATGAAAACACAAA+TGG - chr3_1:72154356-72154375 Msa0373130:intron 25.0%
! TGTGAAATGAAAACACAAAT+GGG - chr3_1:72154357-72154376 Msa0373130:intron 25.0%
!! TTTTTCTTTCTTCACTAATC+TGG - chr3_1:72154441-72154460 Msa0373130:intron 25.0%
! CATTAAGTAAGAAAATACGT+TGG + chr3_1:72154506-72154525 None:intergenic 25.0%
!!! ATTGCAAATTTGATTTTCTC+TGG + chr3_1:72154612-72154631 None:intergenic 25.0%
! GAGAAAATCAAATTTGCAAT+TGG - chr3_1:72154612-72154631 Msa0373130:intron 25.0%
! AAATCTTGTCAGTTTGTAAA+TGG - chr3_1:72154830-72154849 Msa0373130:CDS 25.0%
!! TCCTAATAATTTTCACTGAT+GGG - chr3_1:72155232-72155251 Msa0373130:intron 25.0%
! AACATATTGCAATCTTCTAA+TGG - chr3_1:72155345-72155364 Msa0373130:intron 25.0%
! TGTTAAACAAACACTTATGT+AGG + chr3_1:72155609-72155628 None:intergenic 25.0%
! ACATAAGTGTTTGTTTAACA+AGG - chr3_1:72155609-72155628 Msa0373130:intron 25.0%
! GACTTAATATGATCAACAAT+TGG + chr3_1:72155835-72155854 None:intergenic 25.0%
!! TTTTAATGCGTGAATTAAGA+TGG + chr3_1:72155873-72155892 None:intergenic 25.0%
! TGAACAATTAATTAATAGCG+TGG + chr3_1:72156006-72156025 None:intergenic 25.0%
! TAATTGTTCATTGGAATTCT+TGG - chr3_1:72156016-72156035 Msa0373130:intron 25.0%
!! TTTCGTTGTTATTCTGAATT+TGG + chr3_1:72156561-72156580 None:intergenic 25.0%
!!! TTCTTTTTTGTTGTGTGAAA+TGG - chr3_1:72156814-72156833 Msa0373130:intron 25.0%
!!! TATAATTCAAAAGTGCTATC+CGG + chr3_1:72156861-72156880 None:intergenic 25.0%
! GATTTAACACAAACATATAC+GGG + chr3_1:72157077-72157096 None:intergenic 25.0%
! TCTGCATTTAACTATTTGTT+TGG - chr3_1:72157192-72157211 Msa0373130:CDS 25.0%
!! TGTGTTTCACTATCTTATTT+AGG - chr3_1:72157248-72157267 Msa0373130:five_prime_UTR 25.0%
! CTAAACATATACTGAACTTA+TGG - chr3_1:72157502-72157521 Msa0373130:intron 25.0%
!! AAATATTTAGCTTCTATGGA+AGG - chr3_1:72157672-72157691 Msa0373130:intron 25.0%
! GAAATTCAGTTTGTAAGATA+AGG + chr3_1:72157896-72157915 None:intergenic 25.0%
! TTCAACCAAATCAATTACTT+TGG + chr3_1:72157969-72157988 None:intergenic 25.0%
!!! AAGTAATTGATTTGGTTGAA+TGG - chr3_1:72157969-72157988 Msa0373130:five_prime_UTR 25.0%
! ACAAGATTTGAAGAAAATTC+TGG - chr3_1:72158197-72158216 Msa0373130:intron 25.0%
! CAAGATTTGAAGAAAATTCT+GGG - chr3_1:72158198-72158217 Msa0373130:intron 25.0%
! AATTGATAAAGTGACTCAAA+TGG + chr3_1:72158285-72158304 None:intergenic 25.0%
!!! GTTCATGATTATTTTTAGTG+TGG - chr3_1:72158363-72158382 Msa0373130:five_prime_UTR 25.0%
! ATGGCTACAAAGAAAATAAA+GGG + chr3_1:72158408-72158427 None:intergenic 25.0%
AATGGAAAAAGGTTTACTGA+AGG + chr3_1:72153131-72153150 None:intergenic 30.0%
GATAAAAAAAGTGAAACTGG+AGG - chr3_1:72153160-72153179 Msa0373130:intron 30.0%
! AAAATCCCAATGATGGAAAA+AGG + chr3_1:72153343-72153362 None:intergenic 30.0%
! AATTTCAGAAAGAAGGCATA+TGG - chr3_1:72153398-72153417 Msa0373130:CDS 30.0%
! ATTTCAGAAAGAAGGCATAT+GGG - chr3_1:72153399-72153418 Msa0373130:CDS 30.0%
! TCAAAAGACTTTTGCATGAA+TGG - chr3_1:72153451-72153470 Msa0373130:intron 30.0%
! CAAAAGACTTTTGCATGAAT+GGG - chr3_1:72153452-72153471 Msa0373130:intron 30.0%
! TTTTGCATGAATGGGAAATT+TGG - chr3_1:72153460-72153479 Msa0373130:intron 30.0%
! GTTTTCTTTTTCCCAAAGTT+GGG - chr3_1:72153661-72153680 Msa0373130:CDS 30.0%
! TTTTCTTTTTCCCAAAGTTG+GGG - chr3_1:72153662-72153681 Msa0373130:CDS 30.0%
GTATTAATGATCGGTTACAA+TGG - chr3_1:72153721-72153740 Msa0373130:intron 30.0%
! AATTTTTGTGCCTATGTGAT+GGG - chr3_1:72154002-72154021 Msa0373130:intron 30.0%
TTATTCCTTAATCTGAACTC+GGG + chr3_1:72154049-72154068 None:intergenic 30.0%
GTTATTCCTTAATCTGAACT+CGG + chr3_1:72154050-72154069 None:intergenic 30.0%
!!! AATGCATTTTGAAGCTATAG+CGG - chr3_1:72154124-72154143 Msa0373130:intron 30.0%
GTGAAATGAAAACACAAATG+GGG - chr3_1:72154358-72154377 Msa0373130:intron 30.0%
AATGTCAAAACCAGGAATAT+GGG - chr3_1:72154554-72154573 Msa0373130:intron 30.0%
! ATGGTATTTCTGTCAAAGAA+TGG - chr3_1:72154682-72154701 Msa0373130:intron 30.0%
!!! ATTCTGAGATGAGTTGTTTT+AGG - chr3_1:72154887-72154906 Msa0373130:CDS 30.0%
ATTTAATATTCTCCCACACT+TGG + chr3_1:72155161-72155180 None:intergenic 30.0%
GTGAAAATTATTAGGACAGA+CGG + chr3_1:72155228-72155247 None:intergenic 30.0%
! GTCCTAATAATTTTCACTGA+TGG - chr3_1:72155231-72155250 Msa0373130:intron 30.0%
TCCCATCAGTGAAAATTATT+AGG + chr3_1:72155236-72155255 None:intergenic 30.0%
TAGAAGATTGCAATATGTTC+AGG + chr3_1:72155344-72155363 None:intergenic 30.0%
TCTACTTATTGCAAATAGTC+TGG - chr3_1:72155368-72155387 Msa0373130:intron 30.0%
CTACTTATTGCAAATAGTCT+GGG - chr3_1:72155369-72155388 Msa0373130:intron 30.0%
ATTGCATTGAAAGTTCATCA+GGG + chr3_1:72155520-72155539 None:intergenic 30.0%
TGTTGATCATATTAAGTCCT+TGG - chr3_1:72155837-72155856 Msa0373130:intron 30.0%
GTTGATCATATTAAGTCCTT+GGG - chr3_1:72155838-72155857 Msa0373130:intron 30.0%
! CTTTTTACTAACTAATGGGA+AGG - chr3_1:72155927-72155946 Msa0373130:intron 30.0%
! TCCATTTCTTCACAATTTTG+AGG - chr3_1:72156041-72156060 Msa0373130:intron 30.0%
TCCTCAAAATTGTGAAGAAA+TGG + chr3_1:72156045-72156064 None:intergenic 30.0%
!! CAGAATATCCACTGTTTTAA+GGG + chr3_1:72156074-72156093 None:intergenic 30.0%
! TCAGAATATCCACTGTTTTA+AGG + chr3_1:72156075-72156094 None:intergenic 30.0%
CATATGTGAACATTTATGAC+TGG + chr3_1:72156166-72156185 None:intergenic 30.0%
CAGTCATAAATGTTCACATA+TGG - chr3_1:72156164-72156183 Msa0373130:intron 30.0%
TGTTCACATATGGTAAGTAA+TGG - chr3_1:72156174-72156193 Msa0373130:intron 30.0%
GAGTTATATTATCCTTTGAC+TGG - chr3_1:72156376-72156395 Msa0373130:CDS 30.0%
AAACTATTACAACCAGTCAA+AGG + chr3_1:72156391-72156410 None:intergenic 30.0%
!! TTGACTGGTTGTAATAGTTT+TGG - chr3_1:72156391-72156410 Msa0373130:CDS 30.0%
AAGTATATTACTGCTTCAGT+TGG + chr3_1:72156493-72156512 None:intergenic 30.0%
GTTTGTAATATTTGTCAGTG+AGG - chr3_1:72156584-72156603 Msa0373130:intron 30.0%
TAAATAGAATGTCAGCATAC+TGG + chr3_1:72156628-72156647 None:intergenic 30.0%
TAACAAATACATTTGAGTGG+CGG + chr3_1:72156989-72157008 None:intergenic 30.0%
TGCTAACAAATACATTTGAG+TGG + chr3_1:72156992-72157011 None:intergenic 30.0%
! TGATGATTTTTGCTTTGCTT+TGG + chr3_1:72157413-72157432 None:intergenic 30.0%
TCTATAGGAGATCTTTGTAA+GGG + chr3_1:72157618-72157637 None:intergenic 30.0%
TTCTATAGGAGATCTTTGTA+AGG + chr3_1:72157619-72157638 None:intergenic 30.0%
TTACAAAGATCTCCTATAGA+AGG - chr3_1:72157618-72157637 Msa0373130:intron 30.0%
GCTAAATAGAAACCTTCTAT+AGG + chr3_1:72157633-72157652 None:intergenic 30.0%
ATAGAAGGTTTCTATTTAGC+TGG - chr3_1:72157633-72157652 Msa0373130:intron 30.0%
! ATTCAGGTTAGGTCAATATT+CGG + chr3_1:72157853-72157872 None:intergenic 30.0%
! TTATATCCACTATTCAGGTT+AGG + chr3_1:72157864-72157883 None:intergenic 30.0%
TCTTACAAACTGAATTTCTG+AGG - chr3_1:72157898-72157917 Msa0373130:intron 30.0%
CATATAAGTAGATCATGAAG+CGG + chr3_1:72157935-72157954 None:intergenic 30.0%
GAACTCCAAAGTAATTGATT+TGG - chr3_1:72157961-72157980 Msa0373130:five_prime_UTR 30.0%
! CTTGATAGCTAAAACTTTCA+TGG + chr3_1:72158024-72158043 None:intergenic 30.0%
TTATCAATTCATACGAAGAC+AGG - chr3_1:72158296-72158315 Msa0373130:five_prime_UTR 30.0%
! CTTTTCCCTAAATATTTGTC+GGG + chr3_1:72158324-72158343 None:intergenic 30.0%
! CCTTTTCCCTAAATATTTGT+CGG + chr3_1:72158325-72158344 None:intergenic 30.0%
CATGGCTACAAAGAAAATAA+AGG + chr3_1:72158409-72158428 None:intergenic 30.0%
GTGATATGATATTACAAGCA+TGG + chr3_1:72158427-72158446 None:intergenic 30.0%
! TGGCCTCTTTCTTTTTCTTT+TGG - chr3_1:72152587-72152606 Msa0373130:three_prime_UTR 35.0%
! TTTTCAAATTATCCCAGGAC+TGG - chr3_1:72152620-72152639 Msa0373130:three_prime_UTR 35.0%
! CTTGTCAACTGCAAAGTATT+TGG - chr3_1:72152647-72152666 Msa0373130:three_prime_UTR 35.0%
! ATCTTCGATTTTGCTCTTCT+TGG - chr3_1:72152759-72152778 Msa0373130:three_prime_UTR 35.0%
! GAATTAATTTTCCGGCTCTT+TGG - chr3_1:72152875-72152894 Msa0373130:intron 35.0%
TCTCTCTTAGCAATGGAAAA+AGG + chr3_1:72153142-72153161 None:intergenic 35.0%
TCTATACTTTCTTTCTCCTG+TGG + chr3_1:72153217-72153236 None:intergenic 35.0%
ACTAGTAGAAGGTCAAAGAA+TGG + chr3_1:72153266-72153285 None:intergenic 35.0%
! CAATGCCTTTTTCCATCATT+GGG - chr3_1:72153335-72153354 Msa0373130:CDS 35.0%
AAGGATCAAAATCCCAATGA+TGG + chr3_1:72153350-72153369 None:intergenic 35.0%
!!! AGTCTTTTGAGATTGAAGCT+TGG + chr3_1:72153441-72153460 None:intergenic 35.0%
TAGTACAATACATGTGCCAA+GGG + chr3_1:72153518-72153537 None:intergenic 35.0%
ATAGTACAATACATGTGCCA+AGG + chr3_1:72153519-72153538 None:intergenic 35.0%
! CGTTTTCTTTTTCCCAAAGT+TGG - chr3_1:72153660-72153679 Msa0373130:CDS 35.0%
CAAATAGGTTCTGCACATTA+GGG + chr3_1:72153692-72153711 None:intergenic 35.0%
TAATACCGAGTTCTCCAAAT+AGG + chr3_1:72153707-72153726 None:intergenic 35.0%
GAGAACTCGGTATTAATGAT+CGG - chr3_1:72153712-72153731 Msa0373130:intron 35.0%
TAATGATCGGTTACAATGGA+AGG - chr3_1:72153725-72153744 Msa0373130:intron 35.0%
AACTTACCATTTAACGGAGA+TGG + chr3_1:72153822-72153841 None:intergenic 35.0%
GTTGTAAGACTTTACGTATG+TGG - chr3_1:72153839-72153858 Msa0373130:intron 35.0%
! CAATTTTTGTGCCTATGTGA+TGG - chr3_1:72154001-72154020 Msa0373130:intron 35.0%
AAAAACCCGAGTTCAGATTA+AGG - chr3_1:72154041-72154060 Msa0373130:CDS 35.0%
TCAGATTAAGGAATAACCCT+TGG - chr3_1:72154053-72154072 Msa0373130:intron 35.0%
TGCTGTGTTAAAACTTCCAA+GGG + chr3_1:72154072-72154091 None:intergenic 35.0%
ATGCTGTGTTAAAACTTCCA+AGG + chr3_1:72154073-72154092 None:intergenic 35.0%
AAAACACAAATGGGGATCAA+GGG - chr3_1:72154366-72154385 Msa0373130:intron 35.0%
GAATGTCAAAACCAGGAATA+TGG - chr3_1:72154553-72154572 Msa0373130:intron 35.0%
!! AAATTTGATTTTCTCTGGCC+AGG + chr3_1:72154607-72154626 None:intergenic 35.0%
CAAAGAATGGATGAGAAAAC+AGG - chr3_1:72154695-72154714 Msa0373130:intron 35.0%
AATGGATGAGAAAACAGGTA+TGG - chr3_1:72154700-72154719 Msa0373130:intron 35.0%
TTGTCTTGATTCCATAACTG+TGG - chr3_1:72154726-72154745 Msa0373130:intron 35.0%
!!! TGAAATTTTCAAGTCACGAC+AGG + chr3_1:72154805-72154824 None:intergenic 35.0%
TCTTGTCAGTTTGTAAATGG+AGG - chr3_1:72154833-72154852 Msa0373130:CDS 35.0%
CTTGTCAGTTTGTAAATGGA+GGG - chr3_1:72154834-72154853 Msa0373130:CDS 35.0%
TTGTCAGTTTGTAAATGGAG+GGG - chr3_1:72154835-72154854 Msa0373130:CDS 35.0%
!!! TGAGATGAGTTGTTTTAGGA+TGG - chr3_1:72154891-72154910 Msa0373130:CDS 35.0%
CACTGATGGGAAATAAAGAA+AGG - chr3_1:72155245-72155264 Msa0373130:intron 35.0%
TTCAGGAATGCCCTATAATA+TGG + chr3_1:72155444-72155463 None:intergenic 35.0%
AGTGTTCATAGCAATGTCAA+AGG - chr3_1:72155478-72155497 Msa0373130:CDS 35.0%
!! ATCAGGGTTGATGAAGTTTA+GGG + chr3_1:72155504-72155523 None:intergenic 35.0%
CATTGCATTGAAAGTTCATC+AGG + chr3_1:72155521-72155540 None:intergenic 35.0%
! TGCTTTAAACCGATTTCTTC+AGG - chr3_1:72155550-72155569 Msa0373130:intron 35.0%
ATCCAGTGTTTGTGAAACAT+AGG - chr3_1:72155693-72155712 Msa0373130:intron 35.0%
ATCCTATGTTTCACAAACAC+TGG + chr3_1:72155698-72155717 None:intergenic 35.0%
ATTCTTCAATAGGAGAAGCA+TGG - chr3_1:72155760-72155779 Msa0373130:intron 35.0%
TTGGCATACAAAGTCTTTCA+GGG + chr3_1:72155816-72155835 None:intergenic 35.0%
ATTGGCATACAAAGTCTTTC+AGG + chr3_1:72155817-72155836 None:intergenic 35.0%
! GGAAGTCTTATAAACATACC+TGG + chr3_1:72155985-72156004 None:intergenic 35.0%
!!! AATATCCACTGTTTTAAGGG+AGG + chr3_1:72156071-72156090 None:intergenic 35.0%
! TTCTCCAATCTCTGGAAATA+AGG + chr3_1:72156130-72156149 None:intergenic 35.0%
CAACTAATTTCTCCAATCTC+TGG + chr3_1:72156138-72156157 None:intergenic 35.0%
CAGAGATTGGAGAAATTAGT+TGG - chr3_1:72156136-72156155 Msa0373130:intron 35.0%
TATATTACTGCTTCAGTTGG+TGG + chr3_1:72156490-72156509 None:intergenic 35.0%
AAGAAAACCTGCTAAAGAGA+AGG + chr3_1:72156700-72156719 None:intergenic 35.0%
! CTCTATCTTTTATCCCTTCT+AGG + chr3_1:72156746-72156765 None:intergenic 35.0%
CTAGAAGGGATAAAAGATAG+AGG - chr3_1:72156744-72156763 Msa0373130:intron 35.0%
CTTACAAGTTACTGACATGT+CGG + chr3_1:72156959-72156978 None:intergenic 35.0%
ACTACGTGAAATCCATTCTT+CGG + chr3_1:72157322-72157341 None:intergenic 35.0%
CGTAGTGACGAAGATATTAT+CGG - chr3_1:72157336-72157355 Msa0373130:intron 35.0%
AATTTCATCAGGGAAGAGTT+TGG + chr3_1:72157382-72157401 None:intergenic 35.0%
ACAATGTAGTCGGTTACATT+AGG + chr3_1:72157550-72157569 None:intergenic 35.0%
TATTGACCTAACCTGAATAG+TGG - chr3_1:72157855-72157874 Msa0373130:intron 35.0%
!! ACCTGAATAGTGGATATAAG+TGG - chr3_1:72157865-72157884 Msa0373130:intron 35.0%
TCCACTTATATCCACTATTC+AGG + chr3_1:72157869-72157888 None:intergenic 35.0%
CGCTTCATGATCTACTTATA+TGG - chr3_1:72157933-72157952 Msa0373130:intron 35.0%
ATGGACTTTCATATCAACTC+AGG - chr3_1:72157988-72158007 Msa0373130:intron 35.0%
TGTCTTTAATACGCAGGATT+CGG - chr3_1:72158116-72158135 Msa0373130:intron 35.0%
! TCATATCAACTTTGAGGACT+TGG - chr3_1:72158236-72158255 Msa0373130:intron 35.0%
! CATATCAACTTTGAGGACTT+GGG - chr3_1:72158237-72158256 Msa0373130:intron 35.0%
! ATATCAACTTTGAGGACTTG+GGG - chr3_1:72158238-72158257 Msa0373130:intron 35.0%
AGGTTCCCGACAAATATTTA+GGG - chr3_1:72158316-72158335 Msa0373130:five_prime_UTR 35.0%
CCGACAAATATTTAGGGAAA+AGG - chr3_1:72158322-72158341 Msa0373130:five_prime_UTR 35.0%
TAATACTTGTGTGCGAGCTT+TGG - chr3_1:72152567-72152586 Msa0373130:three_prime_UTR 40.0%
! AAGAGATGTTCTAGGTGGAA+AGG - chr3_1:72152704-72152723 Msa0373130:three_prime_UTR 40.0%
!!! CGTTTTCTAAGATTGCTGCA+TGG - chr3_1:72152997-72153016 Msa0373130:intron 40.0%
CTTCTACTAGTGTATGCTCT+CGG - chr3_1:72153275-72153294 Msa0373130:CDS 40.0%
!! AAGGCATTGGACTTGATTGT+TGG + chr3_1:72153324-72153343 None:intergenic 40.0%
! CCAATGATGGAAAAAGGCAT+TGG + chr3_1:72153337-72153356 None:intergenic 40.0%
! CCAATGCCTTTTTCCATCAT+TGG - chr3_1:72153334-72153353 Msa0373130:CDS 40.0%
CCAAATAGGTTCTGCACATT+AGG + chr3_1:72153693-72153712 None:intergenic 40.0%
CCTAATGTGCAGAACCTATT+TGG - chr3_1:72153690-72153709 Msa0373130:CDS 40.0%
CAGAACCTATTTGGAGAACT+CGG - chr3_1:72153699-72153718 Msa0373130:CDS 40.0%
TCAAATCGACTAAACTCTCC+AGG + chr3_1:72153783-72153802 None:intergenic 40.0%
TACCATTTAACGGAGATGGA+AGG + chr3_1:72153818-72153837 None:intergenic 40.0%
! AATCTGAACTCGGGTTTTTG+AGG + chr3_1:72154040-72154059 None:intergenic 40.0%
GAAAACACAAATGGGGATCA+AGG - chr3_1:72154365-72154384 Msa0373130:intron 40.0%
! CTTCACTAATCTGGTTTGCA+TGG - chr3_1:72154450-72154469 Msa0373130:intron 40.0%
ATGCTGTGAATGTCAAAACC+AGG - chr3_1:72154546-72154565 Msa0373130:intron 40.0%
TTGATGAACTGCCACAGTTA+TGG + chr3_1:72154740-72154759 None:intergenic 40.0%
TATATCACCAGTCAAGGTCA+TGG - chr3_1:72154779-72154798 Msa0373130:intron 40.0%
CATTATCGTCATCAAGTCAC+TGG + chr3_1:72154921-72154940 None:intergenic 40.0%
AGTTTCCTTACTTCCAAGTG+TGG - chr3_1:72155145-72155164 Msa0373130:CDS 40.0%
GTTTCCTTACTTCCAAGTGT+GGG - chr3_1:72155146-72155165 Msa0373130:CDS 40.0%
ATTATTAGGACAGACGGCAT+TGG + chr3_1:72155222-72155241 None:intergenic 40.0%
ACTTCATCAGTTACACGTTC+AGG + chr3_1:72155461-72155480 None:intergenic 40.0%
!! CATCAGGGTTGATGAAGTTT+AGG + chr3_1:72155505-72155524 None:intergenic 40.0%
ATGATCGCACCTGAAGAAAT+CGG + chr3_1:72155562-72155581 None:intergenic 40.0%
!!! TGGTTCTAAGATGGCCTTTT+TGG - chr3_1:72155780-72155799 Msa0373130:intron 40.0%
!! TCTAAGATGGCCTTTTTGGA+CGG - chr3_1:72155784-72155803 Msa0373130:intron 40.0%
TGGCATACAAAGTCTTTCAG+GGG + chr3_1:72155815-72155834 None:intergenic 40.0%
GATCATATTAAGTCCTTGGG+CGG - chr3_1:72155841-72155860 Msa0373130:intron 40.0%
ACTAATGGGAAGGTGATTGA+AGG - chr3_1:72155937-72155956 Msa0373130:intron 40.0%
CTAATGGGAAGGTGATTGAA+GGG - chr3_1:72155938-72155957 Msa0373130:intron 40.0%
TAATGGGAAGGTGATTGAAG+GGG - chr3_1:72155939-72155958 Msa0373130:intron 40.0%
GATTTCCTCCCTTAAAACAG+TGG - chr3_1:72156063-72156082 Msa0373130:intron 40.0%
TTCTTCCTGAGAACTGGAAA+GGG - chr3_1:72156101-72156120 Msa0373130:intron 40.0%
! GGTTCCTTATTTCCAGAGAT+TGG - chr3_1:72156123-72156142 Msa0373130:intron 40.0%
TGAATAGAAATCTGCGGTTG+TGG - chr3_1:72156318-72156337 Msa0373130:CDS 40.0%
ATAGAATGTCAGCATACTGG+TGG + chr3_1:72156625-72156644 None:intergenic 40.0%
ATGATCACCTTCTCTTTAGC+AGG - chr3_1:72156690-72156709 Msa0373130:intron 40.0%
AAACACTTGTGATGCCTAGA+AGG - chr3_1:72156729-72156748 Msa0373130:intron 40.0%
AACACTTGTGATGCCTAGAA+GGG - chr3_1:72156730-72156749 Msa0373130:intron 40.0%
CTCTTTCCTTCTTTGCATTC+CGG - chr3_1:72156839-72156858 Msa0373130:intron 40.0%
TCGGCATATACACTTAGAAG+GGG + chr3_1:72156940-72156959 None:intergenic 40.0%
GTCGGCATATACACTTAGAA+GGG + chr3_1:72156941-72156960 None:intergenic 40.0%
TGTCGGCATATACACTTAGA+AGG + chr3_1:72156942-72156961 None:intergenic 40.0%
! CGACATGTCAGTAACTTGTA+AGG - chr3_1:72156957-72156976 Msa0373130:intron 40.0%
! CAATTTGAGACAGTGCTTTC+TGG - chr3_1:72157110-72157129 Msa0373130:intron 40.0%
TAACCCAAACCAGTCTATGT+TGG - chr3_1:72157278-72157297 Msa0373130:five_prime_UTR 40.0%
TTTGGCAAGTTCAGACATTG+TGG + chr3_1:72157364-72157383 None:intergenic 40.0%
GGTCTGCAGAAATTTCATCA+GGG + chr3_1:72157392-72157411 None:intergenic 40.0%
TGGTCTGCAGAAATTTCATC+AGG + chr3_1:72157393-72157412 None:intergenic 40.0%
ACCACGTTGTTAAAACACCA+AGG - chr3_1:72157436-72157455 Msa0373130:intron 40.0%
!!! ACCTTGGTGTTTTAACAACG+TGG + chr3_1:72157440-72157459 None:intergenic 40.0%
TAGTCGGTTACATTAGGACT+CGG + chr3_1:72157544-72157563 None:intergenic 40.0%
GTAACCGACTACATTGTTTC+AGG - chr3_1:72157553-72157572 Msa0373130:intron 40.0%
CTGACCTGAAACAATGTAGT+CGG + chr3_1:72157560-72157579 None:intergenic 40.0%
GGTTAGGTCAATATTCGGTA+TGG + chr3_1:72157848-72157867 None:intergenic 40.0%
CATTGCTGTCTTTAATACGC+AGG - chr3_1:72158110-72158129 Msa0373130:intron 40.0%
! GAAAATTCTGGGAAGAGTAC+AGG - chr3_1:72158209-72158228 Msa0373130:intron 40.0%
! GGAGCATCATATCAACTTTG+AGG - chr3_1:72158230-72158249 Msa0373130:intron 40.0%
! TATCAACTTTGAGGACTTGG+GGG - chr3_1:72158239-72158258 Msa0373130:intron 40.0%
CAGGTTCCCGACAAATATTT+AGG - chr3_1:72158315-72158334 Msa0373130:five_prime_UTR 40.0%
AGGGCTCACATTTCATGTAT+TGG + chr3_1:72158389-72158408 None:intergenic 40.0%
! GCAAAGTATTTGGCAGATGC+TGG - chr3_1:72152657-72152676 Msa0373130:three_prime_UTR 45.0%
TGGTCACAAGCCTATATTGC+TGG - chr3_1:72152677-72152696 Msa0373130:three_prime_UTR 45.0%
TCACAAGCCTATATTGCTGG+AGG - chr3_1:72152680-72152699 Msa0373130:three_prime_UTR 45.0%
TCTCTTGCCTCCAGCAATAT+AGG + chr3_1:72152690-72152709 None:intergenic 45.0%
AGGAACAGTCGGATAAGAAC+AGG + chr3_1:72152823-72152842 None:intergenic 45.0%
CAGCATTAACTCCAAAGAGC+CGG + chr3_1:72152889-72152908 None:intergenic 45.0%
GCTGCATGGAAAGATGAAGA+TGG - chr3_1:72153011-72153030 Msa0373130:intron 45.0%
GGAAAGATGAAGATGGAGAC+TGG - chr3_1:72153018-72153037 Msa0373130:intron 45.0%
AGATGGAGACTGGTATGAGA+CGG - chr3_1:72153028-72153047 Msa0373130:intron 45.0%
! CGAGAGCATACACTAGTAGA+AGG + chr3_1:72153277-72153296 None:intergenic 45.0%
! GTGTATGCTCTCGGTAGTTT+TGG - chr3_1:72153284-72153303 Msa0373130:CDS 45.0%
ATTGGATGTGTGATGCAGCA+AGG + chr3_1:72153369-72153388 None:intergenic 45.0%
! ACTGGTCTACAAGCACTGTT+AGG + chr3_1:72153492-72153511 None:intergenic 45.0%
TTAGGGTAAGCCCCAACTTT+GGG + chr3_1:72153675-72153694 None:intergenic 45.0%
ATTAGGGTAAGCCCCAACTT+TGG + chr3_1:72153676-72153695 None:intergenic 45.0%
TAACGGAGATGGAAGGACTT+CGG + chr3_1:72153811-72153830 None:intergenic 45.0%
GTCCTTCCATCTCCGTTAAA+TGG - chr3_1:72153813-72153832 Msa0373130:intron 45.0%
! ACTAATCTGGTTTGCATGGC+TGG - chr3_1:72154454-72154473 Msa0373130:intron 45.0%
CTCAAGATTGCCCATATTCC+TGG + chr3_1:72154567-72154586 None:intergenic 45.0%
CAGGAATATGGGCAATCTTG+AGG - chr3_1:72154565-72154584 Msa0373130:intron 45.0%
GGAATAATGAGATGCTGACC+TGG - chr3_1:72154586-72154605 Msa0373130:intron 45.0%
CTTGACTGGTGATATAGCCA+AGG + chr3_1:72154775-72154794 None:intergenic 45.0%
CTTGGCTATATCACCAGTCA+AGG - chr3_1:72154773-72154792 Msa0373130:intron 45.0%
TCAGTTTGTAAATGGAGGGG+AGG - chr3_1:72154838-72154857 Msa0373130:CDS 45.0%
TTCTCCCACACTTGGAAGTA+AGG + chr3_1:72155153-72155172 None:intergenic 45.0%
!! GGAGAAGCATGGTTCTAAGA+TGG - chr3_1:72155771-72155790 Msa0373130:intron 45.0%
GCATACAAAGTCTTTCAGGG+GGG + chr3_1:72155813-72155832 None:intergenic 45.0%
GGCATACAAAGTCTTTCAGG+GGG + chr3_1:72155814-72155833 None:intergenic 45.0%
AGCTTCTTCTTCCTGAGAAC+TGG - chr3_1:72156095-72156114 Msa0373130:intron 45.0%
CTTCTTCCTGAGAACTGGAA+AGG - chr3_1:72156100-72156119 Msa0373130:intron 45.0%
TCTTCCTGAGAACTGGAAAG+GGG - chr3_1:72156102-72156121 Msa0373130:intron 45.0%
GAAATCTGCGGTTGTGGTAT+AGG - chr3_1:72156324-72156343 Msa0373130:CDS 45.0%
CGGAATGCAAAGAAGGAAAG+AGG + chr3_1:72156841-72156860 None:intergenic 45.0%
TGCTATCCGGAATGCAAAGA+AGG + chr3_1:72156848-72156867 None:intergenic 45.0%
TTGAGGCTACAACTTTGGCA+TGG + chr3_1:72157033-72157052 None:intergenic 45.0%
TGCCAAAGTTGTAGCCTCAA+TGG - chr3_1:72157033-72157052 Msa0373130:intron 45.0%
GACCATTGAGGCTACAACTT+TGG + chr3_1:72157038-72157057 None:intergenic 45.0%
TTGTAGCCTCAATGGTCTCT+AGG - chr3_1:72157041-72157060 Msa0373130:intron 45.0%
TGTAGCCTCAATGGTCTCTA+GGG - chr3_1:72157042-72157061 Msa0373130:intron 45.0%
GCACTGTCTCAAATTGATGC+AGG + chr3_1:72157106-72157125 None:intergenic 45.0%
CTGAACGTTGCAATGCTGTT+TGG - chr3_1:72157221-72157240 Msa0373130:CDS 45.0%
!! GCTCCAACATAGACTGGTTT+GGG + chr3_1:72157284-72157303 None:intergenic 45.0%
! AGCTCCAACATAGACTGGTT+TGG + chr3_1:72157285-72157304 None:intergenic 45.0%
AAACCAGTCTATGTTGGAGC+TGG - chr3_1:72157284-72157303 Msa0373130:five_prime_UTR 45.0%
AAACCAGCTCCAACATAGAC+TGG + chr3_1:72157290-72157309 None:intergenic 45.0%
! TTTTTGCACCAGCCGAAGAA+TGG - chr3_1:72157307-72157326 Msa0373130:intron 45.0%
ACTCAGTGGGACTAAAACCT+TGG + chr3_1:72157456-72157475 None:intergenic 45.0%
!! AGGTTTTAGTCCCACTGAGT+TGG - chr3_1:72157456-72157475 Msa0373130:intron 45.0%
GATCTTTGTAAGGGACGACA+CGG + chr3_1:72157609-72157628 None:intergenic 45.0%
!! ATGGAAGGTGCTGTTCTTTC+TGG - chr3_1:72157687-72157706 Msa0373130:intron 45.0%
!! TGGAAGGTGCTGTTCTTTCT+GGG - chr3_1:72157688-72157707 Msa0373130:intron 45.0%
TTGTGCACAGGCTATTGTAC+AGG - chr3_1:72157716-72157735 Msa0373130:intron 45.0%
! CAAATTATCCCAGGACTGGC+TGG - chr3_1:72152624-72152643 Msa0373130:three_prime_UTR 50.0%
CTGGAGGCAAGAGATGTTCT+AGG - chr3_1:72152696-72152715 Msa0373130:three_prime_UTR 50.0%
! GAGGCAAGAGATGTTCTAGG+TGG - chr3_1:72152699-72152718 Msa0373130:three_prime_UTR 50.0%
GATGGAGACTGGTATGAGAC+GGG - chr3_1:72153029-72153048 Msa0373130:intron 50.0%
GTGGTGTCTTTCGCAGCTTA+AGG + chr3_1:72153198-72153217 None:intergenic 50.0%
TAAGCTGCGAAAGACACCAC+AGG - chr3_1:72153198-72153217 Msa0373130:intron 50.0%
TTGAAGCTTGGACAGAGCAC+AGG + chr3_1:72153429-72153448 None:intergenic 50.0%
CTTGTAGACCAGTTAGCCCT+TGG - chr3_1:72153499-72153518 Msa0373130:intron 50.0%
TACATGTGCCAAGGGCTAAC+TGG + chr3_1:72153510-72153529 None:intergenic 50.0%
! TTTGCTATGCCAAGCAAGCC+TGG - chr3_1:72153762-72153781 Msa0373130:intron 50.0%
! CTAAACTCTCCAGGCTTGCT+TGG + chr3_1:72153774-72153793 None:intergenic 50.0%
AACGGAGATGGAAGGACTTC+GGG + chr3_1:72153810-72153829 None:intergenic 50.0%
!! TGTGCCTATGTGATGGGCAT+TGG - chr3_1:72154008-72154027 Msa0373130:intron 50.0%
!! GTGCCTATGTGATGGGCATT+GGG - chr3_1:72154009-72154028 Msa0373130:intron 50.0%
GGACTTCTTCCAGCTATGCT+TGG - chr3_1:72154633-72154652 Msa0373130:intron 50.0%
CTTCTTCCAGCTATGCTTGG+TGG - chr3_1:72154636-72154655 Msa0373130:intron 50.0%
GCGTATGTTGAGGCTCAAGA+TGG - chr3_1:72154663-72154682 Msa0373130:intron 50.0%
GTTCAGGCGAAATCAACCCA+AGG + chr3_1:72155328-72155347 None:intergenic 50.0%
TGCTACCCTAGAGACCATTG+AGG + chr3_1:72157050-72157069 None:intergenic 50.0%
CGTGAAATCCATTCTTCGGC+TGG + chr3_1:72157318-72157337 None:intergenic 50.0%
GGACGACACGGTTCACAATT+TGG + chr3_1:72157597-72157616 None:intergenic 50.0%
! TTCTGGGAAGCTTTGTGCAC+AGG - chr3_1:72157704-72157723 Msa0373130:intron 50.0%
! ATTCGGAGCTACTTGCTGCT+CGG - chr3_1:72158133-72158152 Msa0373130:intron 50.0%
TTGACAAGCCAGCCAGTCCT+GGG + chr3_1:72152635-72152654 None:intergenic 55.0%
CTGCCCAATGCCCATCACAT+AGG + chr3_1:72154015-72154034 None:intergenic 55.0%
! TCCAGCTATGCTTGGTGGAC+AGG - chr3_1:72154641-72154660 Msa0373130:intron 55.0%
! TGGTGGACAGGCGTATGTTG+AGG - chr3_1:72154653-72154672 Msa0373130:intron 55.0%
AGGGGGGTTTCCGTCCAAAA+AGG + chr3_1:72155797-72155816 None:intergenic 55.0%
! AAGATGGACTTCACCGCCCA+AGG + chr3_1:72155857-72155876 None:intergenic 55.0%
GCTTATGTGTCTGCAGCACC+AGG - chr3_1:72155964-72155983 Msa0373130:intron 55.0%
GGAACCCCTTTCCAGTTCTC+AGG + chr3_1:72156109-72156128 None:intergenic 55.0%
! TTCGGAGCTACTTGCTGCTC+GGG - chr3_1:72158134-72158153 Msa0373130:intron 55.0%
GTTGACAAGCCAGCCAGTCC+TGG + chr3_1:72152636-72152655 None:intergenic 60.0%
GCCTGTCCACCAAGCATAGC+TGG + chr3_1:72154645-72154664 None:intergenic 60.0%
CGACAGGCCATGACCTTGAC+TGG + chr3_1:72154789-72154808 None:intergenic 60.0%
! TCGGAGCTACTTGCTGCTCG+GGG - chr3_1:72158135-72158154 Msa0373130:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72152481 72158519 72152481 ID=Msa0373130;Name=Msa0373130
chr3_1 mRNA 72152481 72158519 72152481 ID=Msa0373130-mRNA-1;Parent=Msa0373130;Name=Msa0373130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=380|1|1|1|1|1|12|328|389
chr3_1 exon 72152481 72152868 72152481 ID=Msa0373130-mRNA-1:exon:15983;Parent=Msa0373130-mRNA-1
chr3_1 exon 72153263 72153425 72153263 ID=Msa0373130-mRNA-1:exon:15982;Parent=Msa0373130-mRNA-1
chr3_1 exon 72153543 72153730 72153543 ID=Msa0373130-mRNA-1:exon:15981;Parent=Msa0373130-mRNA-1
chr3_1 exon 72154022 72154067 72154022 ID=Msa0373130-mRNA-1:exon:15980;Parent=Msa0373130-mRNA-1
chr3_1 exon 72154289 72154336 72154289 ID=Msa0373130-mRNA-1:exon:15979;Parent=Msa0373130-mRNA-1
chr3_1 exon 72154815 72154917 72154815 ID=Msa0373130-mRNA-1:exon:15978;Parent=Msa0373130-mRNA-1
chr3_1 exon 72155015 72155228 72155015 ID=Msa0373130-mRNA-1:exon:15977;Parent=Msa0373130-mRNA-1
chr3_1 exon 72155429 72155548 72155429 ID=Msa0373130-mRNA-1:exon:15976;Parent=Msa0373130-mRNA-1
chr3_1 exon 72156284 72156432 72156284 ID=Msa0373130-mRNA-1:exon:15975;Parent=Msa0373130-mRNA-1
chr3_1 exon 72157166 72157321 72157166 ID=Msa0373130-mRNA-1:exon:15974;Parent=Msa0373130-mRNA-1
chr3_1 exon 72157935 72157992 72157935 ID=Msa0373130-mRNA-1:exon:15973;Parent=Msa0373130-mRNA-1
chr3_1 exon 72158275 72158519 72158275 ID=Msa0373130-mRNA-1:exon:15972;Parent=Msa0373130-mRNA-1
chr3_1 five_prime_UTR 72158275 72158519 72158275 ID=Msa0373130-mRNA-1:five_prime_utr;Parent=Msa0373130-mRNA-1
chr3_1 five_prime_UTR 72157935 72157992 72157935 ID=Msa0373130-mRNA-1:five_prime_utr;Parent=Msa0373130-mRNA-1
chr3_1 five_prime_UTR 72157245 72157321 72157245 ID=Msa0373130-mRNA-1:five_prime_utr;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72157166 72157244 72157166 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72156284 72156432 72156284 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72155429 72155548 72155429 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72155015 72155228 72155015 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72154815 72154917 72154815 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72154289 72154336 72154289 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72154022 72154067 72154022 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72153543 72153730 72153543 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72153263 72153425 72153263 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 CDS 72152809 72152868 72152809 ID=Msa0373130-mRNA-1:cds;Parent=Msa0373130-mRNA-1
chr3_1 three_prime_UTR 72152481 72152808 72152481 ID=Msa0373130-mRNA-1:three_prime_utr;Parent=Msa0373130-mRNA-1
Gene Sequence

>Msa0373130

ATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGAAGTCCTTCCATCTCCGTTAAATGGAATATGGGCAATCTTGAGGAATAATGAGATGCTGACCTGGCCAGAGAAAATCAAATTTGCAATTGGACTTCTTCCAGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTATTTCTGTCAAAGAATGGATGAGAAAACAGGGCATTCCTGAACGTGTAACTGATGAAGTGTTCATAGCAATGTCAAAGGCCCTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATTTTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGACGGAAACCCCCCTGAAAGACTTTGTATGCCAATTGTTGATCATATTAAGTCCTTGGGCGGTGAAGTCCATCTTAATTCACGCATTAAAAATATTGAGCTAAACGATGATAACACAGTGAAAAGCTTTTTACTAACTAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTCTGCAGCACCAGTGGATATTCTGAAGCTTCTTCTTCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACGTATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTAAGTGTATATGCCGACATGTCAGTAACTTGTAAGGAATACTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGAAGATATTATCGGTGCCACAATGTCTGAACTTGCCAAACTCTTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCAAAAATCATCAAGTACCACGTTGTTAAAACACCAAGGTCAGTTTACAAAACTGTTCCAAATTGTGAACCGTGTCGTCCCTTACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCTATGGAAGGTGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCGGAGCTACTTGCTGCTCGGGGTCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA

Protein sequence

>Msa0373130

MIFAMPSKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQAYVEAQDGISVKEWMRKQGIPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIKSLGGEVHLNSRIKNIELNDDNTVKSFLLTNGKVIEGDAYVSAAPVDILKLLLPENWKGVPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIGATMSELAKLFPDEISADQSKAKIIKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLAARGQKRIAQASTV*