AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073350 MtrunA17_Chr1g0180761 96.653 239 8 0 1 239 1 239 2.40e-173 476
Msa0073350 MtrunA17_Chr5g0415351 89.565 115 8 1 42 156 12 122 1.85e-67 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073350 AT5G52970.2 79.006 181 36 1 59 239 45 223 1.09e-103 300
Msa0073350 AT5G52970.1 79.006 181 36 1 59 239 45 223 1.09e-103 300

Find 64 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATATTATGCAGAATTTA+AGG 0.135967 1_2:-46920235 Msa0073350:three_prime_UTR
CTCTCACTTTGTTTATTATT+TGG 0.163402 1_2:-46922313 Msa0073350:CDS
GTTTGGCTGTCAAAGATTTC+TGG 0.192590 1_2:-46921223 Msa0073350:CDS
TGGACATCCCACGTAGTTTC+TGG 0.229398 1_2:-46920734 Msa0073350:CDS
AACTCTTTAGGAAGCAATTC+TGG 0.245643 1_2:+46922160 None:intergenic
TAACAAACAAGTTTCCAAAA+AGG 0.279430 1_2:-46922566 Msa0073350:five_prime_UTR
AGGATTTAAGTTGAGAGTTT+TGG 0.282622 1_2:-46921363 Msa0073350:CDS
GATCATAAACCTGGAGTATC+AGG 0.309953 1_2:+46921329 None:intergenic
CTGGAGTATCAGGATAGTTC+TGG 0.327962 1_2:+46921339 None:intergenic
CTTAGTGTTTCCTTACTCAT+TGG 0.330550 1_2:-46920007 Msa0073350:three_prime_UTR
ATGACTGTACTAAACTCTTT+AGG 0.358717 1_2:+46922148 None:intergenic
AGTACAGTCATTGATGTTGC+TGG 0.367259 1_2:-46922136 Msa0073350:CDS
TGTTGGTGCTACCGTTGATT+TGG 0.370930 1_2:-46920754 Msa0073350:CDS
GAACTGAACATAACGTATAA+AGG 0.385383 1_2:-46920284 Msa0073350:three_prime_UTR
TATGTTAGTAATACATATTA+CGG 0.386381 1_2:-46920198 Msa0073350:three_prime_UTR
TCACTTTGTTTATTATTTGG+AGG 0.399730 1_2:-46922310 Msa0073350:intron
ATGAAATCTGCTGTTTAAAC+TGG 0.401151 1_2:-46920073 Msa0073350:three_prime_UTR
CTTAATACATCCAATGAGTA+AGG 0.405947 1_2:+46919997 None:intergenic
ATGTTAGTAATACATATTAC+GGG 0.406024 1_2:-46920197 Msa0073350:three_prime_UTR
ATCTATTGAGTCAGCAGTTA+TGG 0.410545 1_2:-46920365 Msa0073350:CDS
GCTGATCTTGAAAAGGATAC+AGG 0.427812 1_2:-46921383 Msa0073350:CDS
GTGATATATATACTTTCAAC+AGG 0.439643 1_2:+46919929 None:intergenic
AGTCGCTTGGCAGGCAAGTA+CGG 0.442941 1_2:-46920711 Msa0073350:CDS
GTTGCTTGAGAGAACCAGTT+GGG 0.457347 1_2:-46920333 Msa0073350:CDS
TTTGTTGCTGATCCCACGTT+TGG 0.459599 1_2:-46921176 Msa0073350:intron
GTCGCTTGGCAGGCAAGTAC+GGG 0.460149 1_2:-46920710 Msa0073350:CDS
GAACAATTATTAGCCCCAAC+TGG 0.470077 1_2:+46920319 None:intergenic
GAGTGAAGAAATGATAGAAT+TGG 0.472998 1_2:+46922381 None:intergenic
AATATATTGAATTTCAATGT+TGG 0.475240 1_2:-46920771 Msa0073350:CDS
CAGTGTATTCATCTTAAGCT+AGG 0.484777 1_2:-46920050 Msa0073350:three_prime_UTR
TGGAGTATCAGGATAGTTCT+GGG 0.496693 1_2:+46921340 None:intergenic
GTTAGAGATGTGAATGATGA+TGG 0.497967 1_2:+46922496 None:intergenic
CATAGATTCTTTACCAAACG+TGG 0.506396 1_2:+46921163 None:intergenic
AGTTTCTGGAGTCGCTTGGC+AGG 0.507283 1_2:-46920720 Msa0073350:CDS
TGGATTCCTCTCCGATGGAC+AGG 0.514246 1_2:-46922116 Msa0073350:intron
AGAGATTGCTGATCTTGAAA+AGG 0.515456 1_2:-46921390 Msa0073350:CDS
GAAGACAAGGTGAGCGATGT+GGG 0.524631 1_2:+46922470 None:intergenic
TATTAAGTAAAACACAATGA+TGG 0.532171 1_2:-46919981 Msa0073350:three_prime_UTR
CCAGATAGAGCAAAATGTAA+AGG 0.537019 1_2:+46922340 None:intergenic
GCTGAGGCTGCTACTAAAGC+TGG 0.540195 1_2:-46922193 Msa0073350:CDS
ACGTAGTTTCTGGAGTCGCT+TGG 0.551070 1_2:-46920724 Msa0073350:CDS
AATTAAAATACATTGCATCA+TGG 0.559353 1_2:+46920173 None:intergenic
CAGAACTATCCTGATACTCC+AGG 0.561162 1_2:-46921338 Msa0073350:intron
GTTGCTGGATTCCTCTCCGA+TGG 0.564624 1_2:-46922121 Msa0073350:CDS
AGTGTATTCATCTTAAGCTA+GGG 0.582585 1_2:-46920049 Msa0073350:three_prime_UTR
TGTTGTTGTGTGATGAAGAG+AGG 0.593155 1_2:+46922413 None:intergenic
CAAATAATAAACAAAGTGAG+AGG 0.595591 1_2:+46922314 None:intergenic
GGATTCTAATACCTGTCCAT+CGG 0.616121 1_2:+46922105 None:intergenic
TTGTGAAGAAGATGATGAAG+AGG 0.620282 1_2:+46922520 None:intergenic
AAATAATAAACAAAGTGAGA+GGG 0.624981 1_2:+46922315 None:intergenic
CAATGAGTAAGGAAACACTA+AGG 0.629739 1_2:+46920008 None:intergenic
TGGGGCTAATAATTGTTCTG+AGG 0.629810 1_2:-46920314 Msa0073350:CDS
ATAGATTCTTTACCAAACGT+GGG 0.643008 1_2:+46921164 None:intergenic
TGAACATAACGTATAAAGGA+CGG 0.647930 1_2:-46920280 Msa0073350:three_prime_UTR
GGTAGGGGCTGAAATTGCTG+AGG 0.648153 1_2:-46922209 Msa0073350:intron
AGTTGCTTGAGAGAACCAGT+TGG 0.654577 1_2:-46920334 Msa0073350:CDS
ACGTGGGATGTCCAAATCAA+CGG 0.656283 1_2:+46920743 None:intergenic
TTGCTTGAGAGAACCAGTTG+GGG 0.659543 1_2:-46920332 Msa0073350:CDS
CTAATACCTGTCCATCGGAG+AGG 0.665653 1_2:+46922110 None:intergenic
AGTGATAATGTTTGAAGACA+AGG 0.675678 1_2:+46922457 None:intergenic
TGAAGACAAGGTGAGCGATG+TGG 0.678605 1_2:+46922469 None:intergenic
AAGCGACTCCAGAAACTACG+TGG 0.682614 1_2:+46920726 None:intergenic
TGTTAGTAATACATATTACG+GGG 0.722111 1_2:-46920196 Msa0073350:three_prime_UTR
AGCGACTCCAGAAACTACGT+GGG 0.724493 1_2:+46920727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATCAAGTTTGAATAAT+GGG + chr1_2:46920207-46920226 None:intergenic 15.0%
!! TAAAAATCAAGTTTGAATAA+TGG + chr1_2:46920208-46920227 None:intergenic 15.0%
!! AATATATTGAATTTCAATGT+TGG - chr1_2:46921715-46921734 Msa0073350:intron 15.0%
!! ATTATATTATGCAGAATTTA+AGG - chr1_2:46922251-46922270 Msa0073350:intron 15.0%
!! TATGTTAGTAATACATATTA+CGG - chr1_2:46922288-46922307 Msa0073350:intron 15.0%
!! AAATAATAAACAAAGTGAGA+GGG + chr1_2:46920174-46920193 None:intergenic 20.0%
!!! ATATTGAAAATTCTGGAATT+TGG - chr1_2:46920256-46920275 Msa0073350:three_prime_UTR 20.0%
!!! TTTAAGTTATTTATCCAAAC+AGG + chr1_2:46920405-46920424 None:intergenic 20.0%
!! AATTTCATAAATGTTTATGC+TGG - chr1_2:46920591-46920610 Msa0073350:intron 20.0%
!! TAATAAAAACTATTATGCCA+CGG + chr1_2:46920887-46920906 None:intergenic 20.0%
!! TTAAATTGATCATTATGTTC+AGG - chr1_2:46921057-46921076 Msa0073350:intron 20.0%
!! ATAATGTACTATTATTATGC+AGG - chr1_2:46921241-46921260 Msa0073350:intron 20.0%
!! CATACAAAAAACAATATCAA+TGG - chr1_2:46921881-46921900 Msa0073350:intron 20.0%
!!! TAATGTGTCTATTCTTTTAT+TGG - chr1_2:46922034-46922053 Msa0073350:intron 20.0%
!! TAATCATAATGATCTGATAA+TGG - chr1_2:46922067-46922086 Msa0073350:intron 20.0%
!! ATGTTAGTAATACATATTAC+GGG - chr1_2:46922289-46922308 Msa0073350:intron 20.0%
!! AATTAAAATACATTGCATCA+TGG + chr1_2:46922316-46922335 None:intergenic 20.0%
!! TATTAAGTAAAACACAATGA+TGG - chr1_2:46922505-46922524 Msa0073350:CDS 20.0%
! AACAAACAAGTTTCCAAAAA+GGG - chr1_2:46919921-46919940 Msa0073350:three_prime_UTR 25.0%
! CAAATAATAAACAAAGTGAG+AGG + chr1_2:46920175-46920194 None:intergenic 25.0%
!! CTCTCACTTTGTTTATTATT+TGG - chr1_2:46920173-46920192 Msa0073350:three_prime_UTR 25.0%
!! TCACTTTGTTTATTATTTGG+AGG - chr1_2:46920176-46920195 Msa0073350:three_prime_UTR 25.0%
! CTGCAAAATATTGAAAATTC+TGG - chr1_2:46920249-46920268 Msa0073350:three_prime_UTR 25.0%
!! CGACAGAAATATAAAGATTT+TGG + chr1_2:46920755-46920774 None:intergenic 25.0%
!! TTTATATTTCTGTCGCATTT+GGG - chr1_2:46920760-46920779 Msa0073350:CDS 25.0%
! AATAAAAACTATTATGCCAC+GGG + chr1_2:46920886-46920905 None:intergenic 25.0%
! TTAAAGCTAAAAACCTTGTT+TGG + chr1_2:46921463-46921482 None:intergenic 25.0%
! TTGAAATTCAATATATTGCC+TGG + chr1_2:46921712-46921731 None:intergenic 25.0%
! TGTTAGTAATACATATTACG+GGG - chr1_2:46922290-46922309 Msa0073350:intron 25.0%
! GTGATATATATACTTTCAAC+AGG + chr1_2:46922560-46922579 None:intergenic 25.0%
! AGTGATAATGTTTGAAGACA+AGG + chr1_2:46920032-46920051 None:intergenic 30.0%
GAGTGAAGAAATGATAGAAT+TGG + chr1_2:46920108-46920127 None:intergenic 30.0%
!!! TAAAGGTTTTGAGTGAATGT+TGG + chr1_2:46920132-46920151 None:intergenic 30.0%
! AATCAAGTTTGAATAATGGG+TGG + chr1_2:46920204-46920223 None:intergenic 30.0%
!! TGAAAATTCTGGAATTTGGT+AGG - chr1_2:46920260-46920279 Msa0073350:three_prime_UTR 30.0%
!! GAAAATTCTGGAATTTGGTA+GGG - chr1_2:46920261-46920280 Msa0073350:three_prime_UTR 30.0%
!! AAAATTCTGGAATTTGGTAG+GGG - chr1_2:46920262-46920281 Msa0073350:three_prime_UTR 30.0%
ATGACTGTACTAAACTCTTT+AGG + chr1_2:46920341-46920360 None:intergenic 30.0%
! AAACTGTTTTCATAAGCTAC+CGG - chr1_2:46920495-46920514 Msa0073350:intron 30.0%
ATAACTTATCACATGTCTAG+AGG + chr1_2:46920551-46920570 None:intergenic 30.0%
GTACTACATAAGCTCTATTT+GGG + chr1_2:46920639-46920658 None:intergenic 30.0%
TGTACTACATAAGCTCTATT+TGG + chr1_2:46920640-46920659 None:intergenic 30.0%
ATACAATATCAAGATCACTG+CGG + chr1_2:46920719-46920738 None:intergenic 30.0%
! CTTTATATTTCTGTCGCATT+TGG - chr1_2:46920759-46920778 Msa0073350:CDS 30.0%
TTTGATATTACAGAGAATCG+CGG + chr1_2:46920952-46920971 None:intergenic 30.0%
!!! AGGATTTAAGTTGAGAGTTT+TGG - chr1_2:46921123-46921142 Msa0073350:intron 30.0%
AGGATATTCGCACAATTTAA+GGG - chr1_2:46921180-46921199 Msa0073350:CDS 30.0%
GTACTATTATTATGCAGGTT+TGG - chr1_2:46921246-46921265 Msa0073350:intron 30.0%
ATAGATTCTTTACCAAACGT+GGG + chr1_2:46921325-46921344 None:intergenic 30.0%
TACCGATATAGGTAACATTA+AGG - chr1_2:46921670-46921689 Msa0073350:intron 30.0%
CTCCTTAATGTTACCTATAT+CGG + chr1_2:46921675-46921694 None:intergenic 30.0%
!!! AAGGTAAGCTCTACTTTTTT+GGG - chr1_2:46921820-46921839 Msa0073350:intron 30.0%
!! TATGCTCTAAAATAAGTTGC+TGG + chr1_2:46921865-46921884 None:intergenic 30.0%
GAATAGACACATTAAAATGC+AGG + chr1_2:46922028-46922047 None:intergenic 30.0%
GTTTAATACCAAACGAAACA+GGG - chr1_2:46922089-46922108 Msa0073350:intron 30.0%
GAACTGAACATAACGTATAA+AGG - chr1_2:46922202-46922221 Msa0073350:CDS 30.0%
TGAACATAACGTATAAAGGA+CGG - chr1_2:46922206-46922225 Msa0073350:CDS 30.0%
! ATGAAATCTGCTGTTTAAAC+TGG - chr1_2:46922413-46922432 Msa0073350:CDS 30.0%
AGTGTATTCATCTTAAGCTA+GGG - chr1_2:46922437-46922456 Msa0073350:CDS 30.0%
CTTAATACATCCAATGAGTA+AGG + chr1_2:46922492-46922511 None:intergenic 30.0%
GTTATAGACAAAAAGTCAGT+AGG + chr1_2:46922538-46922557 None:intergenic 30.0%
AACAAGTTTCCAAAAAGGGA+AGG - chr1_2:46919925-46919944 Msa0073350:three_prime_UTR 35.0%
TTGTGAAGAAGATGATGAAG+AGG + chr1_2:46919969-46919988 None:intergenic 35.0%
GTTAGAGATGTGAATGATGA+TGG + chr1_2:46919993-46920012 None:intergenic 35.0%
CCAGATAGAGCAAAATGTAA+AGG + chr1_2:46920149-46920168 None:intergenic 35.0%
! CCTTTACATTTTGCTCTATC+TGG - chr1_2:46920146-46920165 Msa0073350:three_prime_UTR 35.0%
! AACTCTTTAGGAAGCAATTC+TGG + chr1_2:46920329-46920348 None:intergenic 35.0%
ACAGGTATTAGAATCCTGTT+TGG - chr1_2:46920388-46920407 Msa0073350:intron 35.0%
! AACTGTTTTCATAAGCTACC+GGG - chr1_2:46920496-46920515 Msa0073350:intron 35.0%
TACATAAGCTCTATTTGGGT+TGG + chr1_2:46920635-46920654 None:intergenic 35.0%
ATGTTCAAACACTTAGTGAC+AGG - chr1_2:46920671-46920690 Msa0073350:intron 35.0%
TGTAATATCAAAGATCGCGA+CGG - chr1_2:46920960-46920979 Msa0073350:intron 35.0%
AACATTCGAAGGAATGATTC+TGG + chr1_2:46920988-46921007 None:intergenic 35.0%
!! AAGAGTATCAATCATCAGCA+GGG + chr1_2:46921019-46921038 None:intergenic 35.0%
AGAGATTGCTGATCTTGAAA+AGG - chr1_2:46921096-46921115 Msa0073350:intron 35.0%
GAATATCCTGATCATAAACC+TGG + chr1_2:46921169-46921188 None:intergenic 35.0%
CAGGATATTCGCACAATTTA+AGG - chr1_2:46921179-46921198 Msa0073350:CDS 35.0%
! ACAATTTAAGGGTTGAGTTG+AGG - chr1_2:46921191-46921210 Msa0073350:CDS 35.0%
CATAGATTCTTTACCAAACG+TGG + chr1_2:46921326-46921345 None:intergenic 35.0%
! AAGCTAAAAACCTTGTTTGG+AGG + chr1_2:46921460-46921479 None:intergenic 35.0%
GAAGAACAACAGTAACAGAA+AGG + chr1_2:46921613-46921632 None:intergenic 35.0%
TAGATCCATCAAGAAGAAAG+AGG + chr1_2:46921652-46921671 None:intergenic 35.0%
!!! GGAGTTTTTTTTTGTTGACC+AGG - chr1_2:46921691-46921710 Msa0073350:intron 35.0%
! AGTACGGGAACATTTTCTAT+TGG - chr1_2:46921791-46921810 Msa0073350:intron 35.0%
!!! GAAGGTAAGCTCTACTTTTT+TGG - chr1_2:46921819-46921838 Msa0073350:intron 35.0%
!! AAATAAGTTGCTGGCTTTAG+AGG + chr1_2:46921856-46921875 None:intergenic 35.0%
TGCTCATGCATATCAAATCA+TGG - chr1_2:46921934-46921953 Msa0073350:intron 35.0%
GGTTTAATACCAAACGAAAC+AGG - chr1_2:46922088-46922107 Msa0073350:intron 35.0%
ATCTATTGAGTCAGCAGTTA+TGG - chr1_2:46922121-46922140 Msa0073350:CDS 35.0%
CAGTGTATTCATCTTAAGCT+AGG - chr1_2:46922436-46922455 Msa0073350:CDS 35.0%
CAATGAGTAAGGAAACACTA+AGG + chr1_2:46922481-46922500 None:intergenic 35.0%
CTTAGTGTTTCCTTACTCAT+TGG - chr1_2:46922479-46922498 Msa0073350:CDS 35.0%
! CATCATTGTCCTTCCCTTTT+TGG + chr1_2:46919937-46919956 None:intergenic 40.0%
CAAAAAGGGAAGGACAATGA+TGG - chr1_2:46919935-46919954 Msa0073350:three_prime_UTR 40.0%
TGTTGTTGTGTGATGAAGAG+AGG + chr1_2:46920076-46920095 None:intergenic 40.0%
AGTACAGTCATTGATGTTGC+TGG - chr1_2:46920350-46920369 Msa0073350:CDS 40.0%
GGATTCTAATACCTGTCCAT+CGG + chr1_2:46920384-46920403 None:intergenic 40.0%
CTTATTTCCATAAGCTCTCC+CGG + chr1_2:46920517-46920536 None:intergenic 40.0%
TGCTTCTGTTTCATCGTGTA+TGG - chr1_2:46920806-46920825 Msa0073350:intron 40.0%
GGGTTTCAAACAACATTCGA+AGG + chr1_2:46920999-46921018 None:intergenic 40.0%
!! CAAGAGTATCAATCATCAGC+AGG + chr1_2:46921020-46921039 None:intergenic 40.0%
GCTGATCTTGAAAAGGATAC+AGG - chr1_2:46921103-46921122 Msa0073350:intron 40.0%
! TGGAGTATCAGGATAGTTCT+GGG + chr1_2:46921149-46921168 None:intergenic 40.0%
! GATCATAAACCTGGAGTATC+AGG + chr1_2:46921160-46921179 None:intergenic 40.0%
GATACTCCAGGTTTATGATC+AGG - chr1_2:46921160-46921179 Msa0073350:intron 40.0%
GTTTGGCTGTCAAAGATTTC+TGG - chr1_2:46921263-46921282 Msa0073350:intron 40.0%
! AGAGTTTTTGCCTCCAAACA+AGG - chr1_2:46921447-46921466 Msa0073350:intron 40.0%
ACAACAGTAACAGAAAGGTG+TGG + chr1_2:46921608-46921627 None:intergenic 40.0%
AAGAGGCGGAAATAACTTAG+AGG + chr1_2:46921635-46921654 None:intergenic 40.0%
ATCCATCAAGAAGAAAGAGG+CGG + chr1_2:46921649-46921668 None:intergenic 40.0%
! CTTGATGGATCTACCGATAT+AGG - chr1_2:46921659-46921678 Msa0073350:intron 40.0%
! ACGGGAACATTTTCTATTGG+AGG - chr1_2:46921794-46921813 Msa0073350:intron 40.0%
! CGGGAACATTTTCTATTGGA+GGG - chr1_2:46921795-46921814 Msa0073350:intron 40.0%
! CATTTTCTATTGGAGGGAGA+AGG - chr1_2:46921801-46921820 Msa0073350:intron 40.0%
GAACAATTATTAGCCCCAAC+TGG + chr1_2:46922170-46922189 None:intergenic 40.0%
TGGGGCTAATAATTGTTCTG+AGG - chr1_2:46922172-46922191 Msa0073350:CDS 40.0%
GTGCAATGTGACTTCGATTG+AGG - chr1_2:46920916-46920935 Msa0073350:intron 45.0%
CAGAGAATCGCGGTCAAATA+CGG + chr1_2:46920942-46920961 None:intergenic 45.0%
! CTGGAGTATCAGGATAGTTC+TGG + chr1_2:46921150-46921169 None:intergenic 45.0%
CAGAACTATCCTGATACTCC+AGG - chr1_2:46921148-46921167 Msa0073350:intron 45.0%
TTTGTTGCTGATCCCACGTT+TGG - chr1_2:46921310-46921329 Msa0073350:intron 45.0%
TTCCGCCTCTTTCTTCTTGA+TGG - chr1_2:46921644-46921663 Msa0073350:intron 45.0%
!! TGTTGGTGCTACCGTTGATT+TGG - chr1_2:46921732-46921751 Msa0073350:intron 45.0%
ACGTGGGATGTCCAAATCAA+CGG + chr1_2:46921746-46921765 None:intergenic 45.0%
ACTCTACTCACTTCAGACGA+AGG - chr1_2:46921994-46922013 Msa0073350:intron 45.0%
CATCTTCACCCTGTTTCGTT+TGG + chr1_2:46922100-46922119 None:intergenic 45.0%
AGTTGCTTGAGAGAACCAGT+TGG - chr1_2:46922152-46922171 Msa0073350:CDS 45.0%
GTTGCTTGAGAGAACCAGTT+GGG - chr1_2:46922153-46922172 Msa0073350:CDS 45.0%
TTGCTTGAGAGAACCAGTTG+GGG - chr1_2:46922154-46922173 Msa0073350:CDS 45.0%
GAAGACAAGGTGAGCGATGT+GGG + chr1_2:46920019-46920038 None:intergenic 50.0%
TGAAGACAAGGTGAGCGATG+TGG + chr1_2:46920020-46920039 None:intergenic 50.0%
! AGGTGACACGACAGCGTTTT+TGG + chr1_2:46920056-46920075 None:intergenic 50.0%
CTAATACCTGTCCATCGGAG+AGG + chr1_2:46920379-46920398 None:intergenic 50.0%
TAAGCTACCGGGAGAGCTTA+TGG - chr1_2:46920507-46920526 Msa0073350:intron 50.0%
GATGACAGAAATCTGACCCG+TGG - chr1_2:46920867-46920886 Msa0073350:intron 50.0%
TGGACATCCCACGTAGTTTC+TGG - chr1_2:46921752-46921771 Msa0073350:intron 50.0%
AGCGACTCCAGAAACTACGT+GGG + chr1_2:46921762-46921781 None:intergenic 50.0%
AAGCGACTCCAGAAACTACG+TGG + chr1_2:46921763-46921782 None:intergenic 50.0%
!! ACGTAGTTTCTGGAGTCGCT+TGG - chr1_2:46921762-46921781 Msa0073350:intron 50.0%
GGTAGGGGCTGAAATTGCTG+AGG - chr1_2:46920277-46920296 Msa0073350:three_prime_UTR 55.0%
GCTGAGGCTGCTACTAAAGC+TGG - chr1_2:46920293-46920312 Msa0073350:exon 55.0%
GTTGCTGGATTCCTCTCCGA+TGG - chr1_2:46920365-46920384 Msa0073350:CDS 55.0%
TGGATTCCTCTCCGATGGAC+AGG - chr1_2:46920370-46920389 Msa0073350:CDS 55.0%
!! AGTTTCTGGAGTCGCTTGGC+AGG - chr1_2:46921766-46921785 Msa0073350:intron 55.0%
AGTCGCTTGGCAGGCAAGTA+CGG - chr1_2:46921775-46921794 Msa0073350:intron 55.0%
GTCGCTTGGCAGGCAAGTAC+GGG - chr1_2:46921776-46921795 Msa0073350:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 46919921 46922587 46919921 ID=Msa0073350;Name=Msa0073350
chr1_2 mRNA 46919921 46922587 46919921 ID=Msa0073350-mRNA-1;Parent=Msa0073350;Name=Msa0073350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|6|385|239
chr1_2 exon 46919921 46920398 46919921 ID=Msa0073350-mRNA-1:exon:14292;Parent=Msa0073350-mRNA-1
chr1_2 exon 46920686 46920795 46920686 ID=Msa0073350-mRNA-1:exon:14291;Parent=Msa0073350-mRNA-1
chr1_2 exon 46921177 46921245 46921177 ID=Msa0073350-mRNA-1:exon:14290;Parent=Msa0073350-mRNA-1
chr1_2 exon 46921339 46921429 46921339 ID=Msa0073350-mRNA-1:exon:14289;Parent=Msa0073350-mRNA-1
chr1_2 exon 46922117 46922226 46922117 ID=Msa0073350-mRNA-1:exon:14288;Parent=Msa0073350-mRNA-1
chr1_2 exon 46922311 46922587 46922311 ID=Msa0073350-mRNA-1:exon:14287;Parent=Msa0073350-mRNA-1
chr1_2 five_prime_UTR 46922558 46922587 46922558 ID=Msa0073350-mRNA-1:five_prime_utr;Parent=Msa0073350-mRNA-1
chr1_2 CDS 46922311 46922557 46922311 ID=Msa0073350-mRNA-1:cds;Parent=Msa0073350-mRNA-1
chr1_2 CDS 46922117 46922226 46922117 ID=Msa0073350-mRNA-1:cds;Parent=Msa0073350-mRNA-1
chr1_2 CDS 46921339 46921429 46921339 ID=Msa0073350-mRNA-1:cds;Parent=Msa0073350-mRNA-1
chr1_2 CDS 46921177 46921245 46921177 ID=Msa0073350-mRNA-1:cds;Parent=Msa0073350-mRNA-1
chr1_2 CDS 46920686 46920795 46920686 ID=Msa0073350-mRNA-1:cds;Parent=Msa0073350-mRNA-1
chr1_2 CDS 46920306 46920398 46920306 ID=Msa0073350-mRNA-1:cds;Parent=Msa0073350-mRNA-1
chr1_2 three_prime_UTR 46919921 46920305 46919921 ID=Msa0073350-mRNA-1:three_prime_utr;Parent=Msa0073350-mRNA-1
Gene Sequence

>Msa0073350

ATGATGGCACATTATCCTCTTCATCATCTTCTTCACAATCCATCATCATTCACATCTCTAACATTCCCACATCGCTCACCTTGTCTTCAAACATTATCACTGCCAAAAACGCTGTCGTGTCACCTCTCTTCATCACACAACAACAAATGTAGTTCCAATTCTATCATTTCTTCACTCACCAACATTCACTCAAAACCTTTACATTTTGCTCTATCTGGAGCCCTCTCACTTTGTTTATTATTTGGAGGGGCTGAAATTGCTGAGGCTGCTACTAAAGCTGGTGTCAATAAGCCAGAATTGCTTCCTAAAGAGTTTAGTACAGTCATTGATGTTGCTGGATTCCTCTCCGATGGACAGGAGAAAAGACTAGCACAAGAGATTGCTGATCTTGAAAAGGATACAGGATTTAAGTTGAGAGTTTTGGCCCAGAACTATCCTGATACTCCAGGTTTGGCTGTCAAAGATTTCTGGCAAGTAGATGACAGTACAGTTGTCTTTGTTGCTGATCCCACGTTTGGCAATATATTGAATTTCAATGTTGGTGCTACCGTTGATTTGGACATCCCACGTAGTTTCTGGAGTCGCTTGGCAGGCAAGTACGGGAACATTTTCTATTGGAGGGAGAAGGGTGAAGATGCATCTATTGAGTCAGCAGTTATGGCAATTTCTAGTTGCTTGAGAGAACCAGTTGGGGCTAATAATTGTTCTGAGGTGAAATAG

Protein sequence

>Msa0073350

MMAHYPLHHLLHNPSSFTSLTFPHRSPCLQTLSLPKTLSCHLSSSHNNKCSSNSIISSLTNIHSKPLHFALSGALSLCLLFGGAEIAEAATKAGVNKPELLPKEFSTVIDVAGFLSDGQEKRLAQEIADLEKDTGFKLRVLAQNYPDTPGLAVKDFWQVDDSTVVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIFYWREKGEDASIESAVMAISSCLREPVGANNCSEVK*