AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206560 MtrunA17_Chr4g0055551 97.248 218 6 0 8 225 87 304 3.37e-158 440
Msa1206560 MtrunA17_Chr1g0207341 41.270 189 109 2 23 209 153 341 4.48e-48 162
Msa1206560 MtrunA17_Chr7g0272191 46.286 175 91 2 34 205 119 293 4.42e-44 150
Msa1206560 MtrunA17_Chr4g0038261 40.556 180 99 1 25 204 45 216 6.06e-41 139
Msa1206560 MtrunA17_Chr4g0056771 37.234 188 110 1 25 212 95 274 3.77e-38 134
Msa1206560 MtrunA17_Chr7g0270061 37.113 194 107 2 20 206 96 281 2.09e-37 132
Msa1206560 MtrunA17_Chr1g0194601 36.598 194 108 2 20 206 99 284 5.33e-37 131
Msa1206560 MtrunA17_Chr7g0251451 37.778 180 104 1 25 204 79 250 1.08e-36 130
Msa1206560 MtrunA17_Chr5g0409311 36.612 183 108 1 25 207 88 262 9.77e-34 122
Msa1206560 MtrunA17_Chr4g0034751 33.880 183 113 1 25 207 99 273 8.53e-32 117
Msa1206560 MtrunA17_Chr4g0015831 29.508 122 78 1 11 132 8 121 1.95e-14 67.4
Msa1206560 MtrunA17_CPg0492721 29.508 122 78 1 11 132 8 121 1.95e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206560 AT4G17040.1 83.486 218 36 0 8 225 88 305 4.39e-137 387
Msa1206560 AT1G09130.2 48.663 187 93 2 22 205 118 304 5.93e-54 176
Msa1206560 AT1G09130.1 48.663 187 93 2 22 205 118 304 5.93e-54 176
Msa1206560 AT1G09130.3 48.663 187 93 2 22 205 118 304 1.49e-53 176
Msa1206560 AT1G49970.1 46.842 190 99 2 23 210 169 358 2.60e-49 166
Msa1206560 AT5G23140.1 40.761 184 100 2 25 208 48 222 7.84e-44 147
Msa1206560 AT1G12410.1 37.766 188 109 1 25 212 89 268 4.84e-39 136
Msa1206560 AT1G02560.1 38.660 194 104 2 20 206 102 287 1.39e-38 135
Msa1206560 AT5G45390.1 37.222 180 105 1 25 204 79 250 6.55e-36 128
Msa1206560 AT1G66670.1 34.444 180 110 1 25 204 85 256 1.82e-32 120
Msa1206560 AT1G11750.1 32.973 185 116 1 23 207 94 270 1.71e-30 114
Msa1206560 AT1G11750.2 32.973 185 116 1 23 207 112 288 4.39e-30 113
Msa1206560 ATCG00670.1 28.351 194 130 2 11 203 8 193 3.91e-27 103

Find 67 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATATGTACAATAATTTA+TGG 0.187605 8_1:+63640740 None:intergenic
GGAGTTTATGTACAGATAAA+TGG 0.194117 8_1:-63641004 None:intergenic
AGTTGTTTCTGACCTTAAAA+AGG 0.300292 8_1:+63644761 Msa1206560:CDS
CTCTCTGCGTTGGCAATGCT+TGG 0.303068 8_1:+63643613 Msa1206560:CDS
GGGAGAGGCAGCCTTACTTT+TGG 0.318790 8_1:+63643635 Msa1206560:CDS
CACTTGGACTAAAATACTTT+GGG 0.321699 8_1:-63644596 None:intergenic
CCAAGTGAAGCTGTTGAGTA+TGG 0.336233 8_1:+63644612 Msa1206560:CDS
TCCATCTGTTACAGAGTTGA+TGG 0.354136 8_1:+63640939 Msa1206560:CDS
CAGCCTATTGCGCGGTTTCA+AGG 0.358842 8_1:+63643810 Msa1206560:intron
AATTTCATATTTGAATGAAC+TGG 0.365346 8_1:-63645966 None:intergenic
TCACTTGGACTAAAATACTT+TGG 0.371602 8_1:-63644597 None:intergenic
ATCACTAACCTTTGTTGTTC+CGG 0.377807 8_1:-63641028 None:intergenic
CTGCTTGAAATGTGTTAACT+TGG 0.384225 8_1:-63646060 None:intergenic
GAGTTTATGTACAGATAAAT+GGG 0.390251 8_1:-63641003 None:intergenic
GTACAATGAGAGGGGCTCTA+AGG 0.390258 8_1:+63644731 Msa1206560:CDS
TCTCTGCGTTGGCAATGCTT+GGG 0.392552 8_1:+63643614 Msa1206560:CDS
TGACCTTGAAACCGCGCAAT+AGG 0.407017 8_1:-63643813 None:intergenic
AGCAGATTGAAGCTGATATT+CGG 0.440887 8_1:+63644571 Msa1206560:CDS
TACCTCAACTTCAAGAAAAG+AGG 0.445154 8_1:-63644816 None:intergenic
CTTTCAGGGAGGTGAGAAGT+TGG 0.446585 8_1:+63642743 Msa1206560:intron
CACTAGAGTGAAGACAGAAT+TGG 0.449509 8_1:+63643869 Msa1206560:CDS
TTTCAGGGAGGTGAGAAGTT+GGG 0.452298 8_1:+63642744 Msa1206560:intron
TTGTTTCATCGTCATATTGA+AGG 0.457683 8_1:-63640978 None:intergenic
ACAAACGCAATAGCCAAATT+CGG 0.465595 8_1:+63646022 Msa1206560:three_prime_UTR
CTTATCATTATAGTTGATGA+TGG 0.470041 8_1:-63643690 None:intergenic
GGCACAGCTTATTTGACCGC+TGG 0.471577 8_1:+63644782 Msa1206560:exon
GTACACTTAATTTGCAACAT+TGG 0.480876 8_1:+63645837 Msa1206560:three_prime_UTR
TATTTCCCTCCCTTAAGAAA+AGG 0.487419 8_1:+63645889 Msa1206560:three_prime_UTR
CCATACTCAACAGCTTCACT+TGG 0.491392 8_1:-63644612 None:intergenic
CATGCAGTCCCTCTTGAGAA+AGG 0.492109 8_1:-63640844 None:intergenic
TACAGGTAAGAAGCTAAGTC+TGG 0.492907 8_1:-63640880 None:intergenic
CGTTGGCAATGCTTGGGGAG+AGG 0.494410 8_1:+63643620 Msa1206560:CDS
CTCCCTTAAGAAAAGGTAGT+AGG 0.499002 8_1:+63645896 Msa1206560:three_prime_UTR
ACCTCAACTTCAAGAAAAGA+GGG 0.500938 8_1:-63644815 None:intergenic
TGCACCAGCAGCCAAAAGTA+AGG 0.509782 8_1:-63643646 None:intergenic
CTTTCTCAAGAGGGACTGCA+TGG 0.514476 8_1:+63640845 Msa1206560:CDS
ATATCAGCTTCAATCTGCTC+AGG 0.516570 8_1:-63644567 None:intergenic
GCACAGCTTATTTGACCGCT+GGG 0.523713 8_1:+63644783 Msa1206560:exon
AAATTAAGTGTACAAGTGCT+TGG 0.539512 8_1:-63645827 None:intergenic
GCAGGTGTTGTACAATGAGA+GGG 0.541340 8_1:+63644722 Msa1206560:intron
TGCAGGTGTTGTACAATGAG+AGG 0.548770 8_1:+63644721 Msa1206560:intron
CTCTGCGTTGGCAATGCTTG+GGG 0.548984 8_1:+63643615 Msa1206560:CDS
AGGGAGGGAAATACAGTCTA+CGG 0.558497 8_1:-63645879 None:intergenic
ATCAACTATAATGATAAGAC+AGG 0.560171 8_1:+63643695 Msa1206560:CDS
TTGCAGTTTATGATTTGATG+AGG 0.568470 8_1:+63642784 Msa1206560:CDS
TAGGTTATTCCTTTCTCAAG+AGG 0.571434 8_1:+63640835 Msa1206560:intron
AGGTTATTCCTTTCTCAAGA+GGG 0.573523 8_1:+63640836 Msa1206560:intron
TTTCTCAAGAGGGACTGCAT+GGG 0.580047 8_1:+63640846 Msa1206560:CDS
ACCATCAACTCTGTAACAGA+TGG 0.580533 8_1:-63640940 None:intergenic
TAAGAAGCTAAGTCTGGTGG+AGG 0.595854 8_1:-63640874 None:intergenic
TAAGGTCAGAAACAACTCCA+TGG 0.601923 8_1:-63644755 None:intergenic
ACTAACCTTTGTTGTTCCGG+TGG 0.613992 8_1:-63641025 None:intergenic
AGGTAAGAAGCTAAGTCTGG+TGG 0.621610 8_1:-63640877 None:intergenic
TATCTGTACATAAACTCCAC+CGG 0.621927 8_1:+63641009 Msa1206560:CDS
GAGAGGGGCTCTAAGGACCA+TGG 0.632618 8_1:+63644738 Msa1206560:CDS
AGTCTACGGTGTTATAAACA+TGG 0.633480 8_1:-63645865 None:intergenic
GAAGGGACATAGACTCACTC+TGG 0.637286 8_1:+63646102 Msa1206560:three_prime_UTR
AAACTCCACCGGAACAACAA+AGG 0.638142 8_1:+63641020 Msa1206560:CDS
AAGTGTACAAGTGCTTGGCA+CGG 0.650770 8_1:-63645822 None:intergenic
TCAATTTGCAGCCTATTGCG+CGG 0.651428 8_1:+63643802 Msa1206560:intron
CAGGTGTTGTACAATGAGAG+GGG 0.651553 8_1:+63644723 Msa1206560:intron
GAATGAACTGGAATACAACA+AGG 0.657885 8_1:-63645954 None:intergenic
CATGACCACAGAAATTTGTG+CGG 0.658827 8_1:+63645743 Msa1206560:intron
TTGATGATGGCAAAGCAGAA+CGG 0.665478 8_1:-63643677 None:intergenic
TGAGTATGGAATCATAGACA+AGG 0.714132 8_1:+63644626 Msa1206560:CDS
CAATAATTTATGGCACACCG+AGG 0.759230 8_1:+63640750 Msa1206560:CDS
AGAGGGATTTAACTTCCCAG+CGG 0.759377 8_1:-63644798 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATGTTTTTTTTTTG+TGG - chr8_1:63641218-63641237 None:intergenic 10.0%
!! TTAAAAAATGAACTAAAAAA+AGG - chr8_1:63642316-63642335 None:intergenic 10.0%
!! AAAAATGTTAAAGTTATTTA+TGG - chr8_1:63642356-63642375 None:intergenic 10.0%
!! ATAAAATAAAATAAATGACA+GGG - chr8_1:63642834-63642853 None:intergenic 10.0%
!! TAATGTCAAATATTAATTAA+TGG + chr8_1:63643426-63643445 Msa1206560:intron 10.0%
!! AATCTAATTTAACATAATTA+TGG + chr8_1:63643920-63643939 Msa1206560:intron 10.0%
!!! AGTATTATTTCTTATGAAAA+AGG - chr8_1:63641089-63641108 None:intergenic 15.0%
!!! TAGAAATTTTTGAAAAAAAG+TGG - chr8_1:63642171-63642190 None:intergenic 15.0%
!!! TTTTTCAAAAATTTCTAATG+AGG + chr8_1:63642174-63642193 Msa1206560:intron 15.0%
!! TATCTAATAAGAATTATTTG+TGG - chr8_1:63642659-63642678 None:intergenic 15.0%
!! CTTATTAGATATTAAAACAA+TGG + chr8_1:63642668-63642687 Msa1206560:intron 15.0%
!! GATAAAATAAAATAAATGAC+AGG - chr8_1:63642835-63642854 None:intergenic 15.0%
!!! TTATTTTATCATACTTTTGT+TGG + chr8_1:63642845-63642864 Msa1206560:intron 15.0%
!!! TATTTTATCATACTTTTGTT+GGG + chr8_1:63642846-63642865 Msa1206560:intron 15.0%
!!! CTAGAATTTTCTTTATTTTT+AGG + chr8_1:63643167-63643186 Msa1206560:intron 15.0%
!! AATACAAATAAAATAGAGAA+AGG - chr8_1:63643327-63643346 None:intergenic 15.0%
!!! ATCATATTTTTAACATGTAT+GGG - chr8_1:63643366-63643385 None:intergenic 15.0%
!!! ATCACACTTAATTTTTTAAA+TGG - chr8_1:63644113-63644132 None:intergenic 15.0%
!!! ATTTTAAAATATATTCGAGA+GGG - chr8_1:63644242-63644261 None:intergenic 15.0%
!!! TATTTTAAAATATATTCGAG+AGG - chr8_1:63644243-63644262 None:intergenic 15.0%
!!! GGTATATAATGTTTTTTTAA+TGG + chr8_1:63645700-63645719 Msa1206560:intron 15.0%
!!! TATTCATTTTTTCTTGTCTT+TGG + chr8_1:63640811-63640830 Msa1206560:intron 20.0%
!! AAAAATCGAATTGTTTACTT+GGG + chr8_1:63640904-63640923 Msa1206560:CDS 20.0%
!!! ACATTTTTTTTTTTATGTCC+TGG + chr8_1:63641125-63641144 Msa1206560:intron 20.0%
!!! AAAATGTTTTTTTTTTGTGG+TGG - chr8_1:63641215-63641234 None:intergenic 20.0%
!!! AACAATAAACGTTTTTTTAG+TGG + chr8_1:63641314-63641333 Msa1206560:intron 20.0%
!!! ACATATTTTACTTAAAGAAG+TGG - chr8_1:63641413-63641432 None:intergenic 20.0%
!! TATAATTGTGATATAGACAT+AGG + chr8_1:63641660-63641679 Msa1206560:intron 20.0%
!! ATAATTGTGATATAGACATA+GGG + chr8_1:63641661-63641680 Msa1206560:intron 20.0%
!!! ATTTTTGAAAAAAAGTGGAA+GGG - chr8_1:63642166-63642185 None:intergenic 20.0%
!!! AATTTTTGAAAAAAAGTGGA+AGG - chr8_1:63642167-63642186 None:intergenic 20.0%
!! ACAAGATTCTATTAAACAAA+CGG - chr8_1:63642717-63642736 None:intergenic 20.0%
!!! TCTCTATTTTATTTGTATTC+TGG + chr8_1:63643328-63643347 Msa1206560:intron 20.0%
!!! TCATATTTTTAACATGTATG+GGG - chr8_1:63643365-63643384 None:intergenic 20.0%
!!! CATCATATTTTTAACATGTA+TGG - chr8_1:63643367-63643386 None:intergenic 20.0%
!! ATCTATTGTTAGTGTTTAAA+TGG + chr8_1:63643392-63643411 Msa1206560:intron 20.0%
!! AAACTGAGTACATTATTAAA+TGG - chr8_1:63643732-63643751 None:intergenic 20.0%
!!! TTTTAAAATATATTCGAGAG+GGG - chr8_1:63644241-63644260 None:intergenic 20.0%
!! AAGAAAAAAACATCTAGTTA+TGG - chr8_1:63644658-63644677 None:intergenic 20.0%
!!! ATAACTAGATGTTTTTTTCT+TGG + chr8_1:63644657-63644676 Msa1206560:intron 20.0%
!!! TTTAGTAAATGTTGGTTAAT+GGG - chr8_1:63644928-63644947 None:intergenic 20.0%
!!! ATTTAGTAAATGTTGGTTAA+TGG - chr8_1:63644929-63644948 None:intergenic 20.0%
!!! TATTATTCATAAGCTTGTTA+AGG + chr8_1:63645486-63645505 Msa1206560:intron 20.0%
!! AATTTCATATTTGAATGAAC+TGG - chr8_1:63645969-63645988 None:intergenic 20.0%
!!! ATTTTTTCTTGTCTTTGGAT+AGG + chr8_1:63640816-63640835 Msa1206560:intron 25.0%
!! AAACAATTCGATTTTTGTAC+AGG - chr8_1:63640900-63640919 None:intergenic 25.0%
! CAAAAATCGAATTGTTTACT+TGG + chr8_1:63640903-63640922 Msa1206560:CDS 25.0%
! GAGTTTATGTACAGATAAAT+GGG - chr8_1:63641006-63641025 None:intergenic 25.0%
! AAATAATACTTCTCATAGCA+TGG + chr8_1:63641099-63641118 Msa1206560:intron 25.0%
! AGTGTGAATGCATTTATTTA+AGG + chr8_1:63641438-63641457 Msa1206560:intron 25.0%
!! AAACAGGTCTAACTTTAAAA+AGG - chr8_1:63641533-63641552 None:intergenic 25.0%
! TTCAAAAATTTCTAATGAGG+AGG + chr8_1:63642177-63642196 Msa1206560:intron 25.0%
! TCAAAAATTTCTAATGAGGA+GGG + chr8_1:63642178-63642197 Msa1206560:intron 25.0%
!!! TACTATTCTGTATTTTAGCT+CGG + chr8_1:63642486-63642505 Msa1206560:intron 25.0%
! TTTAATACAAACTTTCTGCA+GGG - chr8_1:63643543-63643562 None:intergenic 25.0%
! ATTTAATACAAACTTTCTGC+AGG - chr8_1:63643544-63643563 None:intergenic 25.0%
! ATAACTTAGCTATGTAATTC+TGG + chr8_1:63643562-63643581 Msa1206560:intron 25.0%
!!! CTTATCATTATAGTTGATGA+TGG - chr8_1:63643693-63643712 None:intergenic 25.0%
! ATCAACTATAATGATAAGAC+AGG + chr8_1:63643695-63643714 Msa1206560:CDS 25.0%
!!! CTCAGTTTATTTTATGTCTT+CGG + chr8_1:63643744-63643763 Msa1206560:intron 25.0%
!!! CTTACATTTTGATATTTCAG+TGG - chr8_1:63644018-63644037 None:intergenic 25.0%
! CACTGAAATATCAAAATGTA+AGG + chr8_1:63644016-63644035 Msa1206560:intron 25.0%
!! TTTAAAATATATTCGAGAGG+GGG - chr8_1:63644240-63644259 None:intergenic 25.0%
!! ACCAAAAAATTATTTTCCCA+CGG - chr8_1:63644333-63644352 None:intergenic 25.0%
! CCATAGTAATAAGTTAAAGA+TGG - chr8_1:63644480-63644499 None:intergenic 25.0%
!! CCATCTTTAACTTATTACTA+TGG + chr8_1:63644477-63644496 Msa1206560:intron 25.0%
!! ACACTGTTTGATTTATTTCA+AGG + chr8_1:63644512-63644531 Msa1206560:intron 25.0%
! ACCAAGCAAACTAAAATATA+TGG + chr8_1:63644692-63644711 Msa1206560:intron 25.0%
!!! ACCATATATTTTAGTTTGCT+TGG - chr8_1:63644696-63644715 None:intergenic 25.0%
!! AAAATATATGGTCTTTTTGC+AGG + chr8_1:63644704-63644723 Msa1206560:intron 25.0%
!!! ATATAATGGGTATTTGAAAG+TGG + chr8_1:63645094-63645113 Msa1206560:intron 25.0%
! TCTAATTTATTGAGCTTCTT+TGG + chr8_1:63645180-63645199 Msa1206560:intron 25.0%
! CTAATTTATTGAGCTTCTTT+GGG + chr8_1:63645181-63645200 Msa1206560:intron 25.0%
! GCAAAGCATAATAAATAAGT+AGG + chr8_1:63645322-63645341 Msa1206560:intron 25.0%
! TCTGCTAATTGAGTTAAAAA+TGG + chr8_1:63646125-63646144 Msa1206560:three_prime_UTR 25.0%
TTGTTTCATCGTCATATTGA+AGG - chr8_1:63640981-63641000 None:intergenic 30.0%
GGAGTTTATGTACAGATAAA+TGG - chr8_1:63641007-63641026 None:intergenic 30.0%
AACATGGAAATGTTGTAAGA+AGG + chr8_1:63641291-63641310 Msa1206560:intron 30.0%
!!! TAAACGTTTTTTTAGTGGAG+TGG + chr8_1:63641319-63641338 Msa1206560:intron 30.0%
!!! AAACGTTTTTTTAGTGGAGT+GGG + chr8_1:63641320-63641339 Msa1206560:intron 30.0%
TTGAACTGTTGTATCTACTT+TGG - chr8_1:63641385-63641404 None:intergenic 30.0%
TAACTTTGATTACACAGCAA+CGG - chr8_1:63641496-63641515 None:intergenic 30.0%
!!! CTTGAATTTTTTTGGACTGA+GGG - chr8_1:63641564-63641583 None:intergenic 30.0%
!!! TCTTGAATTTTTTTGGACTG+AGG - chr8_1:63641565-63641584 None:intergenic 30.0%
AGTCCAAAAAAATTCAAGAG+TGG + chr8_1:63641566-63641585 Msa1206560:intron 30.0%
! TCTCAATCAAATGAAAGCAT+GGG - chr8_1:63641726-63641745 None:intergenic 30.0%
ATCTCAATCAAATGAAAGCA+TGG - chr8_1:63641727-63641746 None:intergenic 30.0%
TTCTCAAATGACCTCATAAA+AGG + chr8_1:63641961-63641980 Msa1206560:intron 30.0%
TGCTTCTCAATATACTGTTA+AGG + chr8_1:63642095-63642114 Msa1206560:intron 30.0%
CAAAAATTTCTAATGAGGAG+GGG + chr8_1:63642179-63642198 Msa1206560:intron 30.0%
GTTAGAAAAAGAGTTTGAGA+CGG - chr8_1:63642223-63642242 None:intergenic 30.0%
!!! TGATTTTTTGTTTTCGCAAG+AGG - chr8_1:63642283-63642302 None:intergenic 30.0%
AAGAGATCAAGTTTCTACTT+AGG - chr8_1:63642577-63642596 None:intergenic 30.0%
TAAACAAACGGATCTATTCA+TGG - chr8_1:63642705-63642724 None:intergenic 30.0%
! AATCTTGTTTCCTTCTTTCA+GGG + chr8_1:63642729-63642748 Msa1206560:intron 30.0%
TTGCAGTTTATGATTTGATG+AGG + chr8_1:63642784-63642803 Msa1206560:CDS 30.0%
TTAGTGTTTAAATGGACAAC+TGG + chr8_1:63643400-63643419 Msa1206560:intron 30.0%
AAGATAATATGCCTCTTCTT+TGG - chr8_1:63643489-63643508 None:intergenic 30.0%
AATAGGCTGCAAATTGAAAA+GGG - chr8_1:63643799-63643818 None:intergenic 30.0%
! TAGTGATTTCTTTTCTTGCA+AGG - chr8_1:63643854-63643873 None:intergenic 30.0%
GCTAGATTTACAAATAACAG+TGG - chr8_1:63643961-63643980 None:intergenic 30.0%
TCAAAATGTAAGGTTGTGTT+TGG + chr8_1:63644026-63644045 Msa1206560:intron 30.0%
!!! TCCGTGGGAAAATAATTTTT+TGG + chr8_1:63644329-63644348 Msa1206560:intron 30.0%
!! AAGCTTCTTGCTTTGAAATA+TGG + chr8_1:63644428-63644447 Msa1206560:intron 30.0%
CACTTGGACTAAAATACTTT+GGG - chr8_1:63644599-63644618 None:intergenic 30.0%
TCACTTGGACTAAAATACTT+TGG - chr8_1:63644600-63644619 None:intergenic 30.0%
!!! AGATGTTTTTTTCTTGGAGT+CGG + chr8_1:63644663-63644682 Msa1206560:intron 30.0%
!! AGTTGTTTCTGACCTTAAAA+AGG + chr8_1:63644761-63644780 Msa1206560:CDS 30.0%
! AAATAAGCTGTGCCTTTTTA+AGG - chr8_1:63644776-63644795 None:intergenic 30.0%
CCACAAGATTTAGTAAATGT+TGG - chr8_1:63644936-63644955 None:intergenic 30.0%
CCAACATTTACTAAATCTTG+TGG + chr8_1:63644933-63644952 Msa1206560:intron 30.0%
GTTCTTCATTATTATTTGCC+TGG + chr8_1:63644955-63644974 Msa1206560:intron 30.0%
TTTAGATGTCACAAATAACC+AGG - chr8_1:63644976-63644995 None:intergenic 30.0%
GATGAAAAAAAATGCAATCC+TGG - chr8_1:63645017-63645036 None:intergenic 30.0%
! CACACTTAACATTATGCTTT+TGG + chr8_1:63645053-63645072 Msa1206560:intron 30.0%
ATGAATCATTTACTCATGGT+TGG - chr8_1:63645133-63645152 None:intergenic 30.0%
AGACATGAATCATTTACTCA+TGG - chr8_1:63645137-63645156 None:intergenic 30.0%
ATGATTCATGTCTGTGTAAA+AGG + chr8_1:63645144-63645163 Msa1206560:intron 30.0%
TGATTCATGTCTGTGTAAAA+GGG + chr8_1:63645145-63645164 Msa1206560:intron 30.0%
GCTCAATAAATTAGAGCTTT+AGG - chr8_1:63645175-63645194 None:intergenic 30.0%
TTACACAATTTAAGAGTGAG+AGG - chr8_1:63645230-63645249 None:intergenic 30.0%
TAAAAAGAGAATAGACACGA+TGG - chr8_1:63645288-63645307 None:intergenic 30.0%
GGGTAAACAATGAAATCTTA+TGG - chr8_1:63645386-63645405 None:intergenic 30.0%
ACCAGATTCCTAATGATAAA+GGG + chr8_1:63645408-63645427 Msa1206560:intron 30.0%
GCAAAAGTAAGATATCACAA+GGG + chr8_1:63645625-63645644 Msa1206560:intron 30.0%
!! AAATGGATTAGCAAAAACGA+AGG + chr8_1:63645768-63645787 Msa1206560:three_prime_UTR 30.0%
!! AATGGATTAGCAAAAACGAA+GGG + chr8_1:63645769-63645788 Msa1206560:three_prime_UTR 30.0%
AAATTAAGTGTACAAGTGCT+TGG - chr8_1:63645830-63645849 None:intergenic 30.0%
!! GTACACTTAATTTGCAACAT+TGG + chr8_1:63645837-63645856 Msa1206560:three_prime_UTR 30.0%
! TTCCTACTACCTTTTCTTAA+GGG - chr8_1:63645901-63645920 None:intergenic 30.0%
! GAGTAGCGTATATTTTACCT+CGG - chr8_1:63640770-63640789 None:intergenic 35.0%
TAGGTTATTCCTTTCTCAAG+AGG + chr8_1:63640835-63640854 Msa1206560:intron 35.0%
AGGTTATTCCTTTCTCAAGA+GGG + chr8_1:63640836-63640855 Msa1206560:intron 35.0%
TATCTGTACATAAACTCCAC+CGG + chr8_1:63641009-63641028 Msa1206560:CDS 35.0%
!! ATCACTAACCTTTGTTGTTC+CGG - chr8_1:63641031-63641050 None:intergenic 35.0%
GACAATGCATAGTATATGCA+AGG + chr8_1:63641170-63641189 Msa1206560:intron 35.0%
!!! TGTTTTTTTTTTGTGGTGGC+CGG - chr8_1:63641211-63641230 None:intergenic 35.0%
!!! AACGTTTTTTTAGTGGAGTG+GGG + chr8_1:63641321-63641340 Msa1206560:intron 35.0%
!!! GAGCCACTCTTGAATTTTTT+TGG - chr8_1:63641572-63641591 None:intergenic 35.0%
GTGCATAGAAAATGAAACTC+TGG + chr8_1:63641750-63641769 Msa1206560:intron 35.0%
!! GACTTTTAGTGCTATTGACT+AGG + chr8_1:63641936-63641955 Msa1206560:intron 35.0%
AACAGTATATTGAGAAGCAG+AGG - chr8_1:63642094-63642113 None:intergenic 35.0%
TTTGAAAAAAAGTGGAAGGG+TGG - chr8_1:63642163-63642182 None:intergenic 35.0%
CAAGAGGATAACAAAGACTA+AGG - chr8_1:63642267-63642286 None:intergenic 35.0%
!!! GTATTTTAGCTCGGATTGTT+AGG + chr8_1:63642495-63642514 Msa1206560:intron 35.0%
TATTTGTGGATCTTTCTGCT+TGG - chr8_1:63642645-63642664 None:intergenic 35.0%
! GAATCTTGTTTCCTTCTTTC+AGG + chr8_1:63642728-63642747 Msa1206560:intron 35.0%
TTGGGTCTTAAACTGTATAC+TGG + chr8_1:63642864-63642883 Msa1206560:intron 35.0%
! TCTTAAACTGTATACTGGCT+AGG + chr8_1:63642869-63642888 Msa1206560:intron 35.0%
! CTTAAACTGTATACTGGCTA+GGG + chr8_1:63642870-63642889 Msa1206560:intron 35.0%
! TTAAACTGTATACTGGCTAG+GGG + chr8_1:63642871-63642890 Msa1206560:intron 35.0%
GTTAAACTACTTACACTGAC+TGG + chr8_1:63642906-63642925 Msa1206560:intron 35.0%
! GACAGATCAGCATTTTGTAA+CGG - chr8_1:63643217-63643236 None:intergenic 35.0%
ATAATATGCCTCTTCTTTGG+AGG - chr8_1:63643486-63643505 None:intergenic 35.0%
TAGCTATGTAATTCTGGTAC+AGG + chr8_1:63643568-63643587 Msa1206560:intron 35.0%
ATAGGCTGCAAATTGAAAAG+GGG - chr8_1:63643798-63643817 None:intergenic 35.0%
CAATAGGCTGCAAATTGAAA+AGG - chr8_1:63643800-63643819 None:intergenic 35.0%
AATGTAAGGTTGTGTTTGGA+TGG + chr8_1:63644030-63644049 Msa1206560:intron 35.0%
!!! ATCTCGACTTTTGTTGTTGA+AGG - chr8_1:63644358-63644377 None:intergenic 35.0%
AGCAGATTGAAGCTGATATT+CGG + chr8_1:63644571-63644590 Msa1206560:CDS 35.0%
TGAGTATGGAATCATAGACA+AGG + chr8_1:63644626-63644645 Msa1206560:CDS 35.0%
ACCTCAACTTCAAGAAAAGA+GGG - chr8_1:63644818-63644837 None:intergenic 35.0%
TACCTCAACTTCAAGAAAAG+AGG - chr8_1:63644819-63644838 None:intergenic 35.0%
AAGTTGAGGTAAAGTACATC+TGG + chr8_1:63644828-63644847 Msa1206560:intron 35.0%
AACTTAATGCATGTGAAACC+AGG + chr8_1:63644996-63645015 Msa1206560:intron 35.0%
TGCTAGTTGCTGCTATATAA+TGG + chr8_1:63645080-63645099 Msa1206560:intron 35.0%
GCTAGTTGCTGCTATATAAT+GGG + chr8_1:63645081-63645100 Msa1206560:intron 35.0%
GAAATCTTATGGCCATGAAA+AGG - chr8_1:63645375-63645394 None:intergenic 35.0%
TATCATTAGGAATCTGGTGT+GGG - chr8_1:63645406-63645425 None:intergenic 35.0%
TTATCATTAGGAATCTGGTG+TGG - chr8_1:63645407-63645426 None:intergenic 35.0%
CACCAGATTCCTAATGATAA+AGG + chr8_1:63645407-63645426 Msa1206560:intron 35.0%
ACCCTTTATCATTAGGAATC+TGG - chr8_1:63645412-63645431 None:intergenic 35.0%
TTGCATAAGCTCAATCCAAA+CGG - chr8_1:63645435-63645454 None:intergenic 35.0%
TTTCATAAGCTCAGTCCAAA+CGG + chr8_1:63645601-63645620 Msa1206560:intron 35.0%
GGCAAAAGTAAGATATCACA+AGG + chr8_1:63645624-63645643 Msa1206560:intron 35.0%
TTAGAATGGTCACAATTGCT+TGG + chr8_1:63645652-63645671 Msa1206560:intron 35.0%
GGCTGTTTGGTATATTTGTT+TGG + chr8_1:63645679-63645698 Msa1206560:intron 35.0%
! TTTTTCCGCACAAATTTCTG+TGG - chr8_1:63645751-63645770 None:intergenic 35.0%
CAGAAATTTGTGCGGAAAAA+TGG + chr8_1:63645751-63645770 Msa1206560:intron 35.0%
!! AGTCTACGGTGTTATAAACA+TGG - chr8_1:63645868-63645887 None:intergenic 35.0%
TATTTCCCTCCCTTAAGAAA+AGG + chr8_1:63645889-63645908 Msa1206560:three_prime_UTR 35.0%
! TACTACCTTTTCTTAAGGGA+GGG - chr8_1:63645897-63645916 None:intergenic 35.0%
! GTTCCTACTACCTTTTCTTA+AGG - chr8_1:63645902-63645921 None:intergenic 35.0%
! CAACATTTTACAAAACACGC+AGG - chr8_1:63645930-63645949 None:intergenic 35.0%
GAATGAACTGGAATACAACA+AGG - chr8_1:63645957-63645976 None:intergenic 35.0%
ACAAACGCAATAGCCAAATT+CGG + chr8_1:63646022-63646041 Msa1206560:three_prime_UTR 35.0%
! TTTTCAACTTCTGCCGAATT+TGG - chr8_1:63646038-63646057 None:intergenic 35.0%
CTGCTTGAAATGTGTTAACT+TGG - chr8_1:63646063-63646082 None:intergenic 35.0%
!! CAGCAAGACATTTTAGAAGT+GGG + chr8_1:63646080-63646099 Msa1206560:three_prime_UTR 35.0%
!! AAGACATTTTAGAAGTGGGA+AGG + chr8_1:63646084-63646103 Msa1206560:three_prime_UTR 35.0%
!! AGACATTTTAGAAGTGGGAA+GGG + chr8_1:63646085-63646104 Msa1206560:three_prime_UTR 35.0%
CAATAATTTATGGCACACCG+AGG + chr8_1:63640750-63640769 Msa1206560:CDS 40.0%
TACAGGTAAGAAGCTAAGTC+TGG - chr8_1:63640883-63640902 None:intergenic 40.0%
TCCATCTGTTACAGAGTTGA+TGG + chr8_1:63640939-63640958 Msa1206560:CDS 40.0%
ACCATCAACTCTGTAACAGA+TGG - chr8_1:63640943-63640962 None:intergenic 40.0%
TGCATAGTATATGCAAGGTC+TGG + chr8_1:63641175-63641194 Msa1206560:intron 40.0%
GCATAGTATATGCAAGGTCT+GGG + chr8_1:63641176-63641195 Msa1206560:intron 40.0%
CATAGTATATGCAAGGTCTG+GGG + chr8_1:63641177-63641196 Msa1206560:intron 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG - chr8_1:63641209-63641228 None:intergenic 40.0%
!!! GTTTTTTTTTTGTGGTGGCC+GGG - chr8_1:63641210-63641229 None:intergenic 40.0%
ACATTTCCATGTTCTGCATC+AGG - chr8_1:63641284-63641303 None:intergenic 40.0%
!!! AATTTTTTTGGACTGAGGGC+AGG - chr8_1:63641560-63641579 None:intergenic 40.0%
AGCTAAGTCAATCTATCCTG+AGG + chr8_1:63641773-63641792 Msa1206560:intron 40.0%
!!! TATGGGCTCGTGATTTTTTG+AGG + chr8_1:63641873-63641892 Msa1206560:intron 40.0%
GGAAGGGTGGATAACAAATT+GGG - chr8_1:63642150-63642169 None:intergenic 40.0%
TGGAAGGGTGGATAACAAAT+TGG - chr8_1:63642151-63642170 None:intergenic 40.0%
TTTCTAATGAGGAGGGGATT+AGG + chr8_1:63642185-63642204 Msa1206560:intron 40.0%
! GAAAAAGAGTTTGAGACGGT+GGG - chr8_1:63642219-63642238 None:intergenic 40.0%
! AGAAAAAGAGTTTGAGACGG+TGG - chr8_1:63642220-63642239 None:intergenic 40.0%
GTAACTCGAGGAATGAAACA+CGG - chr8_1:63642530-63642549 None:intergenic 40.0%
GATGAATAGATCGTAACTCG+AGG - chr8_1:63642542-63642561 None:intergenic 40.0%
AGTTTCTACTTAGGACCATC+AGG - chr8_1:63642568-63642587 None:intergenic 40.0%
ATTAACATGCAAGTACCCAG+AGG - chr8_1:63642604-63642623 None:intergenic 40.0%
CTTTCTGCTTGGCAAAGAAA+TGG - chr8_1:63642634-63642653 None:intergenic 40.0%
ACGCAGAGAGTAAAAATAGG+AGG - chr8_1:63643603-63643622 None:intergenic 40.0%
CCAACGCAGAGAGTAAAAAT+AGG - chr8_1:63643606-63643625 None:intergenic 40.0%
!!! CCTATTTTTACTCTCTGCGT+TGG + chr8_1:63643603-63643622 Msa1206560:CDS 40.0%
!! TTGATGATGGCAAAGCAGAA+CGG - chr8_1:63643680-63643699 None:intergenic 40.0%
ATTGAAAAGGGGAACATGGT+TGG - chr8_1:63643787-63643806 None:intergenic 40.0%
GCAAATTGAAAAGGGGAACA+TGG - chr8_1:63643791-63643810 None:intergenic 40.0%
CACTAGAGTGAAGACAGAAT+TGG + chr8_1:63643869-63643888 Msa1206560:CDS 40.0%
TAAGGTTGTGTTTGGATGGA+GGG + chr8_1:63644034-63644053 Msa1206560:intron 40.0%
! TATATTCGAGAGGGGGTTTT+TGG - chr8_1:63644233-63644252 None:intergenic 40.0%
ACCCAAAGTTTATAGATCCG+TGG + chr8_1:63644313-63644332 Msa1206560:intron 40.0%
CCCACGGATCTATAAACTTT+GGG - chr8_1:63644317-63644336 None:intergenic 40.0%
CCCAAAGTTTATAGATCCGT+GGG + chr8_1:63644314-63644333 Msa1206560:intron 40.0%
TCCCACGGATCTATAAACTT+TGG - chr8_1:63644318-63644337 None:intergenic 40.0%
ATATCAGCTTCAATCTGCTC+AGG - chr8_1:63644570-63644589 None:intergenic 40.0%
TAAGGTCAGAAACAACTCCA+TGG - chr8_1:63644758-63644777 None:intergenic 40.0%
! TCCCTCTTTTCTTGAAGTTG+AGG + chr8_1:63644814-63644833 Msa1206560:three_prime_UTR 40.0%
AAAGAGAATAGACACGATGG+AGG - chr8_1:63645285-63645304 None:intergenic 40.0%
TTATGCTTTGCACTGAGTAG+TGG - chr8_1:63645313-63645332 None:intergenic 40.0%
CAAACGGACCCTTTATCATT+AGG - chr8_1:63645419-63645438 None:intergenic 40.0%
CTAATGATAAAGGGTCCGTT+TGG + chr8_1:63645417-63645436 Msa1206560:intron 40.0%
TTCATAAGCTCAGTCCAAAC+GGG + chr8_1:63645602-63645621 Msa1206560:intron 40.0%
!! TATCTTACTTTTGCCCCGTT+TGG - chr8_1:63645619-63645638 None:intergenic 40.0%
ATCACAAGGGACACTTAGAA+TGG + chr8_1:63645638-63645657 Msa1206560:intron 40.0%
ATGGTCACAATTGCTTGGTT+TGG + chr8_1:63645657-63645676 Msa1206560:intron 40.0%
TGGTCACAATTGCTTGGTTT+GGG + chr8_1:63645658-63645677 Msa1206560:intron 40.0%
TGTGGTCATGAATCATGATC+AGG - chr8_1:63645733-63645752 None:intergenic 40.0%
CATGACCACAGAAATTTGTG+CGG + chr8_1:63645743-63645762 Msa1206560:intron 40.0%
TTAGCAAAAACGAAGGGATC+TGG + chr8_1:63645775-63645794 Msa1206560:three_prime_UTR 40.0%
TAGCAAAAACGAAGGGATCT+GGG + chr8_1:63645776-63645795 Msa1206560:three_prime_UTR 40.0%
! CTACTACCTTTTCTTAAGGG+AGG - chr8_1:63645898-63645917 None:intergenic 40.0%
CTCCCTTAAGAAAAGGTAGT+AGG + chr8_1:63645896-63645915 Msa1206560:three_prime_UTR 40.0%
!! GCAGCAAGACATTTTAGAAG+TGG + chr8_1:63646079-63646098 Msa1206560:three_prime_UTR 40.0%
TTTCTCAAGAGGGACTGCAT+GGG + chr8_1:63640846-63640865 Msa1206560:CDS 45.0%
TAAGAAGCTAAGTCTGGTGG+AGG - chr8_1:63640877-63640896 None:intergenic 45.0%
AGGTAAGAAGCTAAGTCTGG+TGG - chr8_1:63640880-63640899 None:intergenic 45.0%
AAACTCCACCGGAACAACAA+AGG + chr8_1:63641020-63641039 Msa1206560:CDS 45.0%
!! ACTAACCTTTGTTGTTCCGG+TGG - chr8_1:63641028-63641047 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr8_1:63641148-63641167 Msa1206560:intron 45.0%
!! TTTTTAGTGGAGTGGGGCAT+AGG + chr8_1:63641327-63641346 Msa1206560:intron 45.0%
ACTGAGGGCAGGATATAAAC+AGG - chr8_1:63641549-63641568 None:intergenic 45.0%
CCAATGATGTCTTCCTCATG+CGG + chr8_1:63641805-63641824 Msa1206560:intron 45.0%
! GATGACATCGGCCTTTTATG+AGG - chr8_1:63641975-63641994 None:intergenic 45.0%
GATAACAAATTGGGCCTGCT+TGG - chr8_1:63642141-63642160 None:intergenic 45.0%
GATCTATTCATCCCTCCTGA+TGG + chr8_1:63642550-63642569 Msa1206560:intron 45.0%
TCTACTTAGGACCATCAGGA+GGG - chr8_1:63642564-63642583 None:intergenic 45.0%
TTCTACTTAGGACCATCAGG+AGG - chr8_1:63642565-63642584 None:intergenic 45.0%
ACTTGATCTCTTGTTGCCTC+TGG + chr8_1:63642585-63642604 Msa1206560:intron 45.0%
CTTGATCTCTTGTTGCCTCT+GGG + chr8_1:63642586-63642605 Msa1206560:intron 45.0%
CTTGTTTCCTTCTTTCAGGG+AGG + chr8_1:63642732-63642751 Msa1206560:intron 45.0%
TTTCAGGGAGGTGAGAAGTT+GGG + chr8_1:63642744-63642763 Msa1206560:intron 45.0%
TCCACCAAGTAACATGTCTG+CGG - chr8_1:63643280-63643299 None:intergenic 45.0%
! TATGCCTCTTCTTTGGAGGT+GGG - chr8_1:63643482-63643501 None:intergenic 45.0%
! ATATGCCTCTTCTTTGGAGG+TGG - chr8_1:63643483-63643502 None:intergenic 45.0%
TCAATTTGCAGCCTATTGCG+CGG + chr8_1:63643802-63643821 Msa1206560:intron 45.0%
GTAAGGTTGTGTTTGGATGG+AGG + chr8_1:63644033-63644052 Msa1206560:intron 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr8_1:63644040-63644059 Msa1206560:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr8_1:63644044-63644063 Msa1206560:intron 45.0%
AACTTTGGGTCTGTTCGAGA+GGG - chr8_1:63644303-63644322 None:intergenic 45.0%
AAACTTTGGGTCTGTTCGAG+AGG - chr8_1:63644304-63644323 None:intergenic 45.0%
CCATACTCAACAGCTTCACT+TGG - chr8_1:63644615-63644634 None:intergenic 45.0%
CCAAGTGAAGCTGTTGAGTA+TGG + chr8_1:63644612-63644631 Msa1206560:CDS 45.0%
! TGCAGGTGTTGTACAATGAG+AGG + chr8_1:63644721-63644740 Msa1206560:intron 45.0%
! GCAGGTGTTGTACAATGAGA+GGG + chr8_1:63644722-63644741 Msa1206560:intron 45.0%
! CAGGTGTTGTACAATGAGAG+GGG + chr8_1:63644723-63644742 Msa1206560:intron 45.0%
! AGAGGGATTTAACTTCCCAG+CGG - chr8_1:63644801-63644820 None:intergenic 45.0%
AATAGACACGATGGAGGTCA+TGG - chr8_1:63645279-63645298 None:intergenic 45.0%
! GCAAACACCTGTCCTTTTCA+TGG + chr8_1:63645360-63645379 Msa1206560:intron 45.0%
CTTATGGCCATGAAAAGGAC+AGG - chr8_1:63645370-63645389 None:intergenic 45.0%
TCATAAGCTCAGTCCAAACG+GGG + chr8_1:63645603-63645622 Msa1206560:intron 45.0%
!! ATTGCTTGGTTTGGGCTGTT+TGG + chr8_1:63645666-63645685 Msa1206560:intron 45.0%
AGCAAAAACGAAGGGATCTG+GGG + chr8_1:63645777-63645796 Msa1206560:three_prime_UTR 45.0%
AAGTGTACAAGTGCTTGGCA+CGG - chr8_1:63645825-63645844 None:intergenic 45.0%
AGGGAGGGAAATACAGTCTA+CGG - chr8_1:63645882-63645901 None:intergenic 45.0%
!!! AAAAAAAAACATTTTTTTTA+TGG + chr8_1:63641220-63641239 Msa1206560:intron 5.0%
CATGCAGTCCCTCTTGAGAA+AGG - chr8_1:63640847-63640866 None:intergenic 50.0%
CTTTCTCAAGAGGGACTGCA+TGG + chr8_1:63640845-63640864 Msa1206560:CDS 50.0%
GAACTGCCTGATGCAGAACA+TGG + chr8_1:63641275-63641294 Msa1206560:intron 50.0%
!! TCATTGGCTCGTAGTACCTC+AGG - chr8_1:63641792-63641811 None:intergenic 50.0%
CCGCATGAGGAAGACATCAT+TGG - chr8_1:63641808-63641827 None:intergenic 50.0%
TAAGATTGTGCGTCCGCATG+AGG - chr8_1:63641821-63641840 None:intergenic 50.0%
CATGCGGACGCACAATCTTA+CGG + chr8_1:63641821-63641840 Msa1206560:intron 50.0%
TATGCAGCGCAGCACAATGT+GGG - chr8_1:63641855-63641874 None:intergenic 50.0%
ATATGCAGCGCAGCACAATG+TGG - chr8_1:63641856-63641875 None:intergenic 50.0%
ACATTGTGCTGCGCTGCATA+TGG + chr8_1:63641855-63641874 Msa1206560:intron 50.0%
CATTGTGCTGCGCTGCATAT+GGG + chr8_1:63641856-63641875 Msa1206560:intron 50.0%
AAACGACGACGCATCACAGT+AGG - chr8_1:63642012-63642031 None:intergenic 50.0%
AAATGTCCACACGCCACTGT+CGG - chr8_1:63642066-63642085 None:intergenic 50.0%
CTGCTTGGTTCAGTTGGAAG+GGG - chr8_1:63642126-63642145 None:intergenic 50.0%
CCTGCTTGGTTCAGTTGGAA+GGG - chr8_1:63642127-63642146 None:intergenic 50.0%
! GTTTGAGACGGTGGGTCAAA+AGG - chr8_1:63642211-63642230 None:intergenic 50.0%
CTTCTCACCTCCCTGAAAGA+AGG - chr8_1:63642742-63642761 None:intergenic 50.0%
CTTTCAGGGAGGTGAGAAGT+TGG + chr8_1:63642743-63642762 Msa1206560:intron 50.0%
TGTGCCGCAGACATGTTACT+TGG + chr8_1:63643273-63643292 Msa1206560:intron 50.0%
! ATGCCTCTTCTTTGGAGGTG+GGG - chr8_1:63643481-63643500 None:intergenic 50.0%
! TCTCTGCGTTGGCAATGCTT+GGG + chr8_1:63643614-63643633 Msa1206560:CDS 50.0%
TGCACCAGCAGCCAAAAGTA+AGG - chr8_1:63643649-63643668 None:intergenic 50.0%
!! ACTTTTGGCTGCTGGTGCAA+AGG + chr8_1:63643650-63643669 Msa1206560:CDS 50.0%
!! CTTTTGGCTGCTGGTGCAAA+GGG + chr8_1:63643651-63643670 Msa1206560:CDS 50.0%
! AGGGGAACATGGTTGGTGTT+TGG - chr8_1:63643780-63643799 None:intergenic 50.0%
TGACCTTGAAACCGCGCAAT+AGG - chr8_1:63643816-63643835 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr8_1:63644043-63644062 Msa1206560:intron 50.0%
! TTGGAGGGTAGGGTTTTGCA+GGG - chr8_1:63644214-63644233 None:intergenic 50.0%
! TTTGGAGGGTAGGGTTTTGC+AGG - chr8_1:63644215-63644234 None:intergenic 50.0%
!! TTCGAGAGGGGGTTTTTGGA+GGG - chr8_1:63644229-63644248 None:intergenic 50.0%
!! ATTCGAGAGGGGGTTTTTGG+AGG - chr8_1:63644230-63644249 None:intergenic 50.0%
! TTCGAGAGGGAGTTTCTGGA+GGG - chr8_1:63644290-63644309 None:intergenic 50.0%
TCTGTTCGAGAGGGAGTTTC+TGG - chr8_1:63644294-63644313 None:intergenic 50.0%
GTACAATGAGAGGGGCTCTA+AGG + chr8_1:63644731-63644750 Msa1206560:CDS 50.0%
GCACAGCTTATTTGACCGCT+GGG + chr8_1:63644783-63644802 Msa1206560:exon 50.0%
TCATGGATGTCACTCGCAGT+AGG - chr8_1:63645262-63645281 None:intergenic 50.0%
GCAAAAACGAAGGGATCTGG+GGG + chr8_1:63645778-63645797 Msa1206560:three_prime_UTR 50.0%
GAAGGGACATAGACTCACTC+TGG + chr8_1:63646102-63646121 Msa1206560:three_prime_UTR 50.0%
CCAACTGAGCTAAGCTCACC+AGG - chr8_1:63641146-63641165 None:intergenic 55.0%
CCTGGTGAGCTTAGCTCAGT+TGG + chr8_1:63641143-63641162 Msa1206560:intron 55.0%
! AAGGTCTGGGGTTCAAACCC+CGG + chr8_1:63641189-63641208 Msa1206560:intron 55.0%
CGCAGCACAATGTGGGATCA+TGG - chr8_1:63641848-63641867 None:intergenic 55.0%
GCGCAAGGAGGAGATGACAT+CGG - chr8_1:63641987-63642006 None:intergenic 55.0%
TCTCTCTGTGCATCCGACAG+TGG + chr8_1:63642050-63642069 Msa1206560:intron 55.0%
CCCTTCCAACTGAACCAAGC+AGG + chr8_1:63642124-63642143 Msa1206560:intron 55.0%
GCCTGCTTGGTTCAGTTGGA+AGG - chr8_1:63642128-63642147 None:intergenic 55.0%
TTGGGCCTGCTTGGTTCAGT+TGG - chr8_1:63642132-63642151 None:intergenic 55.0%
TAACATGTCTGCGGCACAGC+AGG - chr8_1:63643271-63643290 None:intergenic 55.0%
! GCCGCAGACATGTTACTTGG+TGG + chr8_1:63643276-63643295 Msa1206560:intron 55.0%
AGGTGGGGTTGTGCAGTGAT+GGG - chr8_1:63643466-63643485 None:intergenic 55.0%
CAACCCCACCTCCAAAGAAG+AGG + chr8_1:63643475-63643494 Msa1206560:intron 55.0%
TGCAGGGACTTCTGCACGTT+GGG - chr8_1:63643527-63643546 None:intergenic 55.0%
! CTCTCTGCGTTGGCAATGCT+TGG + chr8_1:63643613-63643632 Msa1206560:CDS 55.0%
! CTCTGCGTTGGCAATGCTTG+GGG + chr8_1:63643615-63643634 Msa1206560:CDS 55.0%
! GGGAGAGGCAGCCTTACTTT+TGG + chr8_1:63643635-63643654 Msa1206560:CDS 55.0%
!! GCAGCCTTACTTTTGGCTGC+TGG + chr8_1:63643642-63643661 Msa1206560:CDS 55.0%
CAGCCTATTGCGCGGTTTCA+AGG + chr8_1:63643810-63643829 Msa1206560:intron 55.0%
ATGGAGGGTTTAGGAGGGCA+GGG + chr8_1:63644049-63644068 Msa1206560:intron 55.0%
!! GAGGGGGTTTTTGGAGGGTA+GGG - chr8_1:63644224-63644243 None:intergenic 55.0%
!! AGAGGGGGTTTTTGGAGGGT+AGG - chr8_1:63644225-63644244 None:intergenic 55.0%
! TCGAGAGGGAGTTTCTGGAG+GGG - chr8_1:63644289-63644308 None:intergenic 55.0%
! GTTCGAGAGGGAGTTTCTGG+AGG - chr8_1:63644291-63644310 None:intergenic 55.0%
GGCACAGCTTATTTGACCGC+TGG + chr8_1:63644782-63644801 Msa1206560:exon 55.0%
! TCACAGTAGGAGGCGCAAGG+AGG - chr8_1:63641999-63642018 None:intergenic 60.0%
! GCATCACAGTAGGAGGCGCA+AGG - chr8_1:63642002-63642021 None:intergenic 60.0%
CGACGACGCATCACAGTAGG+AGG - chr8_1:63642009-63642028 None:intergenic 60.0%
GAGGTGGGGTTGTGCAGTGA+TGG - chr8_1:63643467-63643486 None:intergenic 60.0%
CTGCAGGGACTTCTGCACGT+TGG - chr8_1:63643528-63643547 None:intergenic 60.0%
CGTTGGCAATGCTTGGGGAG+AGG + chr8_1:63643620-63643639 Msa1206560:CDS 60.0%
GATGGAGGGTTTAGGAGGGC+AGG + chr8_1:63644048-63644067 Msa1206560:intron 60.0%
! GGGTAGGGTTTTGCAGGGCT+AGG - chr8_1:63644209-63644228 None:intergenic 60.0%
CTGGAGGGGAGGGTTTCGAA+GGG - chr8_1:63644275-63644294 None:intergenic 60.0%
TCTGGAGGGGAGGGTTTCGA+AGG - chr8_1:63644276-63644295 None:intergenic 60.0%
! GAGGGAGTTTCTGGAGGGGA+GGG - chr8_1:63644285-63644304 None:intergenic 60.0%
! AGAGGGAGTTTCTGGAGGGG+AGG - chr8_1:63644286-63644305 None:intergenic 60.0%
!! GAGAGGGGCTCTAAGGACCA+TGG + chr8_1:63644738-63644757 Msa1206560:CDS 60.0%
CGATCGCGCATGCGCGAAGA+AGG + chr8_1:63641906-63641925 Msa1206560:intron 65.0%
GTGCATCCGACAGTGGCGTG+TGG + chr8_1:63642057-63642076 Msa1206560:intron 65.0%
CGGCACAGCAGGACTGTGAC+AGG - chr8_1:63643260-63643279 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63640745 63646154 63640745 ID=Msa1206560;Name=Msa1206560
chr8_1 mRNA 63640745 63646154 63640745 ID=Msa1206560-mRNA-1;Parent=Msa1206560;Name=Msa1206560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.42|0.37|1|0.85|0.75|8|439|225
chr8_1 exon 63640745 63640771 63640745 ID=Msa1206560-mRNA-1:exon:20690;Parent=Msa1206560-mRNA-1
chr8_1 exon 63640838 63641041 63640838 ID=Msa1206560-mRNA-1:exon:20691;Parent=Msa1206560-mRNA-1
chr8_1 exon 63642750 63642805 63642750 ID=Msa1206560-mRNA-1:exon:20692;Parent=Msa1206560-mRNA-1
chr8_1 exon 63643590 63643716 63643590 ID=Msa1206560-mRNA-1:exon:20693;Parent=Msa1206560-mRNA-1
chr8_1 exon 63643813 63643890 63643813 ID=Msa1206560-mRNA-1:exon:20694;Parent=Msa1206560-mRNA-1
chr8_1 exon 63644534 63644647 63644534 ID=Msa1206560-mRNA-1:exon:20695;Parent=Msa1206560-mRNA-1
chr8_1 exon 63644726 63644835 63644726 ID=Msa1206560-mRNA-1:exon:20696;Parent=Msa1206560-mRNA-1
chr8_1 exon 63645754 63646154 63645754 ID=Msa1206560-mRNA-1:exon:20697;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63640745 63640771 63640745 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63640838 63641041 63640838 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63642750 63642805 63642750 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63643590 63643716 63643590 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63643813 63643890 63643813 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63644534 63644647 63644534 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 CDS 63644726 63644797 63644726 ID=Msa1206560-mRNA-1:cds;Parent=Msa1206560-mRNA-1
chr8_1 three_prime_UTR 63644798 63644835 63644798 ID=Msa1206560-mRNA-1:three_prime_utr;Parent=Msa1206560-mRNA-1
chr8_1 three_prime_UTR 63645754 63646154 63645754 ID=Msa1206560-mRNA-1:three_prime_utr;Parent=Msa1206560-mRNA-1
Gene Sequence

>Msa1206560

ATGTACAATAATTTATGGCACACCGAGGTTATTCCTTTCTCAAGAGGGACTGCATGGGAGCAACCTCCACCAGACTTAGCTTCTTACCTGTACAAAAATCGAATTGTTTACTTGGGCATGTCTCTCGTTCCATCTGTTACAGAGTTGATGGTTGCTGAATTTCTTTACCTTCAATATGACGATGAAACAAAACCCATTTATCTGTACATAAACTCCACCGGAACAACAAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAAGCACTTGCAGTTTATGATTTGATGAGGTACATCAAGCCTCCTATTTTTACTCTCTGCGTTGGCAATGCTTGGGGAGAGGCAGCCTTACTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCTGCTTTGCCATCATCAACTATAATGATAAGACAGCCTATTGCGCGGTTTCAAGGTCAAGCAACAGACGTCAACCTTGCAAGAAAAGAAATCACTAGAGTGAAGACAGAATTGGTTAATTTGTTAGCAAAGCACACTGAAAAAACACCTGAGCAGATTGAAGCTGATATTCGGCGCCCAAAGTATTTTAGTCCAAGTGAAGCTGTTGAGTATGGAATCATAGACAAGGTGTTGTACAATGAGAGGGGCTCTAAGGACCATGGAGTTGTTTCTGACCTTAAAAAGGCACAGCTTATTTGA

Protein sequence

>Msa1206560

MYNNLWHTEVIPFSRGTAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELMVAEFLYLQYDDETKPIYLYINSTGTTKGGEKLGYETEALAVYDLMRYIKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARKEITRVKTELVNLLAKHTEKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERGSKDHGVVSDLKKAQLI*