AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334020 MtrunA17_Chr4g0073171 93.962 265 16 0 1 265 1 265 0.0 518
Msa1334020 MtrunA17_Chr2g0300621 29.255 188 108 5 58 236 106 277 4.42e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334020 AT4G28030.1 64.831 236 83 0 27 262 31 266 6.04e-115 331
Msa1334020 AT4G28030.2 61.017 236 81 1 27 262 31 255 2.11e-103 301
Msa1334020 AT2G06025.1 30.481 187 107 4 58 236 95 266 2.84e-16 77.0
Msa1334020 AT2G06025.6 30.481 187 107 4 58 236 95 266 2.84e-16 77.0
Msa1334020 AT2G06025.4 30.481 187 107 4 58 236 95 266 2.84e-16 77.0

Find 60 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTAAGGAGCGTGTTTC+AGG 0.154494 8_4:-54299914 Msa1334020:CDS
CAAAGTCAGTTGCTCGTAAT+TGG 0.193463 8_4:-54299053 Msa1334020:CDS
CTTTCTACGATGATGAATTC+TGG 0.240043 8_4:-54300186 Msa1334020:CDS
TTCATGTACAATTTCTTTGC+TGG 0.253198 8_4:+54297173 None:intergenic
GTTAATGCAGAATTTGAAAA+TGG 0.275846 8_4:+54300310 None:intergenic
AGGATTGAAATTGAATTCTA+AGG 0.285749 8_4:+54300272 None:intergenic
CTTTCAATCACCTAATTTGA+TGG 0.329354 8_4:-54297065 Msa1334020:exon
CACGACAACACCATCAAATT+AGG 0.334600 8_4:+54297055 None:intergenic
CGTAAGTGTCTGGACGAAAT+TGG 0.337880 8_4:+54300131 None:intergenic
GCTAGAGAGTTGCACAGAAA+TGG 0.349757 8_4:-54299102 Msa1334020:CDS
AAAGTCAGTTGCTCGTAATT+GGG 0.384466 8_4:-54299052 Msa1334020:CDS
AGTCTTCCTGATGAAATTGT+AGG 0.385815 8_4:-54299611 Msa1334020:CDS
TGATTTATGTTCTTCATGTA+AGG 0.404309 8_4:-54299816 Msa1334020:intron
ACGTGAGTTTGAAGCACTTA+AGG 0.420143 8_4:-54299927 Msa1334020:CDS
AATGGAGAAGATGAATGAAT+TGG 0.432279 8_4:+54300328 None:intergenic
TTTCTACGATGATGAATTCT+GGG 0.435140 8_4:-54300185 Msa1334020:CDS
CTAGAGAGTTGCACAGAAAT+GGG 0.439454 8_4:-54299101 Msa1334020:CDS
TTTACTTATGAATGAAATGA+AGG 0.445885 8_4:+54296943 None:intergenic
ACTTGGACTCCGTAAGTGTC+TGG 0.451152 8_4:+54300121 None:intergenic
TTCATCCCTACAATTTCATC+AGG 0.451868 8_4:+54299605 None:intergenic
CCCGTGTGACTGTGTTAATA+TGG 0.468972 8_4:-54297024 Msa1334020:three_prime_UTR
CAATTTCGTCCAGACACTTA+CGG 0.474222 8_4:-54300130 Msa1334020:CDS
TTTGATGGTGTTGTCGTGTC+GGG 0.481584 8_4:-54297050 Msa1334020:three_prime_UTR
TCATAATTCATTTCTTACAA+TGG 0.489089 8_4:+54296904 None:intergenic
AGAAACCTTGCCTGCCATGC+AGG 0.496588 8_4:+54297122 None:intergenic
GGAGAAGATGAATGAATTGG+AGG 0.499020 8_4:+54300331 None:intergenic
ATTCTGCTAGTGGAGAAGAC+AGG 0.503889 8_4:-54299670 Msa1334020:CDS
AATGTTTATGGAAGAAGCAT+AGG 0.510788 8_4:+54300252 None:intergenic
GGAGAAGACAGGGTTGTAGT+TGG 0.511921 8_4:-54299659 Msa1334020:CDS
CTTTGCTGGTTCATTGTCAA+CGG 0.514602 8_4:+54297187 None:intergenic
CACTTAAGGAGCGTGTTTCA+GGG 0.519287 8_4:-54299913 Msa1334020:CDS
CTAGTGGAGCTGATACTACA+AGG 0.523464 8_4:-54299149 Msa1334020:CDS
AGAAATTGTACATGAAGAGC+GGG 0.527874 8_4:-54297166 Msa1334020:CDS
GAGTGATGAACCTGCATGGC+AGG 0.529229 8_4:-54297132 Msa1334020:CDS
ATGAACCTGCATGGCAGGCA+AGG 0.531331 8_4:-54297127 Msa1334020:CDS
TTAGGATCATGCTAAGTACT+TGG 0.533106 8_4:-54299954 Msa1334020:intron
GTCTGGACGAAATTGGTTGA+AGG 0.533997 8_4:+54300138 None:intergenic
GCGAAGACTTCTGCTATGGA+TGG 0.537747 8_4:-54297090 Msa1334020:CDS
ATCCATAGCAGAAGTCTTCG+CGG 0.537820 8_4:+54297092 None:intergenic
AAATATGTGCGGCGAGTGCA+AGG 0.547138 8_4:+54296764 None:intergenic
AAGAAATTGTACATGAAGAG+CGG 0.548993 8_4:-54297167 Msa1334020:CDS
ATTTGATGGTGTTGTCGTGT+CGG 0.549344 8_4:-54297051 Msa1334020:three_prime_UTR
GACCGCGAAGACTTCTGCTA+TGG 0.554635 8_4:-54297094 Msa1334020:CDS
AGGCTAGATAAATGTGACAT+AGG 0.565192 8_4:+54299845 None:intergenic
AGAGTTGCACAGAAATGGGT+TGG 0.578468 8_4:-54299097 Msa1334020:CDS
AAGTCAGTTGCTCGTAATTG+GGG 0.584670 8_4:-54299051 Msa1334020:intron
GTCTTCCTGATGAAATTGTA+GGG 0.587974 8_4:-54299610 Msa1334020:CDS
GAAATGAAGGAAAACTAATG+AGG 0.590130 8_4:+54296956 None:intergenic
AAGAACATAAATCATCATAG+AGG 0.592116 8_4:+54299825 None:intergenic
CGAAGACTTCTGCTATGGAT+GGG 0.593997 8_4:-54297089 Msa1334020:CDS
TTCTGCTAGTGGAGAAGACA+GGG 0.600017 8_4:-54299669 Msa1334020:CDS
GTTCATTGTCAACGGCAACA+TGG 0.600217 8_4:+54297195 None:intergenic
GCCATATTAACACAGTCACA+CGG 0.624585 8_4:+54297023 None:intergenic
GAAGGAACGAACACGAAGAG+AGG 0.628307 8_4:+54300156 None:intergenic
CCATATTAACACAGTCACAC+GGG 0.629542 8_4:+54297024 None:intergenic
TTCAGCGATTGTGATCAAAG+AGG 0.684752 8_4:+54300210 None:intergenic
GGAAAACTAATGAGGCAACG+TGG 0.710061 8_4:+54296964 None:intergenic
TAGTGGAGCTGATACTACAA+GGG 0.712956 8_4:-54299148 Msa1334020:CDS
AATTGTAGGGATGAAGCCAG+AGG 0.725736 8_4:-54299597 Msa1334020:intron
ATGAGAGTGATGAACCTGCA+TGG 0.752863 8_4:-54297136 Msa1334020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGAAAGAAAAAAAA+TGG + chr8_4:54297169-54297188 None:intergenic 10.0%
!! TGTAATTTATATTTGTTTAT+CGG - chr8_4:54297499-54297518 Msa1334020:intron 10.0%
!! TTATGAATATTGAAATTATT+TGG + chr8_4:54299121-54299140 None:intergenic 10.0%
!! AATATTCATAACTATTATAT+TGG - chr8_4:54299130-54299149 Msa1334020:CDS 10.0%
!!! TCTTTGTTTATGATTTTATT+TGG + chr8_4:54296818-54296837 None:intergenic 15.0%
!!! ATTAGCTATTTTTATAACAA+AGG - chr8_4:54297776-54297795 Msa1334020:intron 15.0%
!! TAAAACATTATACAATTTGA+TGG + chr8_4:54298074-54298093 None:intergenic 15.0%
!!! AATATTCAGAACTTTTATAT+TGG - chr8_4:54298836-54298855 Msa1334020:intron 15.0%
!!! TTTTGTAAAAATAATCATCA+CGG + chr8_4:54300390-54300409 None:intergenic 15.0%
!!! TTTCCTTGATTTTAATTCAA+TGG - chr8_4:54297466-54297485 Msa1334020:intron 20.0%
!! TTTCCATTGAATTAAAATCA+AGG + chr8_4:54297472-54297491 None:intergenic 20.0%
!! TGATTAAATTGACCAAAATT+AGG + chr8_4:54298731-54298750 None:intergenic 20.0%
!! TTGGTCAATTTAATCATTAT+TGG - chr8_4:54298735-54298754 Msa1334020:intron 20.0%
!!! CATGCAATATTTTGATTAAT+AGG + chr8_4:54299031-54299050 None:intergenic 20.0%
!!! TTAGTTCTTTTGTAAATAGT+AGG - chr8_4:54299288-54299307 Msa1334020:intron 20.0%
!!! TAGTTCTTTTGTAAATAGTA+GGG - chr8_4:54299289-54299308 Msa1334020:intron 20.0%
!! ATGCTATCTTAAAATATAAC+TGG + chr8_4:54299389-54299408 None:intergenic 20.0%
!! AAAGAAAATCTAATCAACTA+GGG + chr8_4:54299753-54299772 None:intergenic 20.0%
!! AAAAGAAAATCTAATCAACT+AGG + chr8_4:54299754-54299773 None:intergenic 20.0%
!!! AATTGTTCATATATTTGTTG+CGG - chr8_4:54299856-54299875 Msa1334020:CDS 20.0%
!! TTTACTTATGAATGAAATGA+AGG + chr8_4:54300311-54300330 None:intergenic 20.0%
!! TCATAATTCATTTCTTACAA+TGG + chr8_4:54300350-54300369 None:intergenic 20.0%
!! TTTGTAAAAATAATCATCAC+GGG + chr8_4:54300389-54300408 None:intergenic 20.0%
! GTTAATGCAGAATTTGAAAA+TGG + chr8_4:54296944-54296963 None:intergenic 25.0%
! AGGATTGAAATTGAATTCTA+AGG + chr8_4:54296982-54297001 None:intergenic 25.0%
! AAGAACATAAATCATCATAG+AGG + chr8_4:54297429-54297448 None:intergenic 25.0%
! TGATTTATGTTCTTCATGTA+AGG - chr8_4:54297435-54297454 Msa1334020:intron 25.0%
! TATATTTGTTTATCGGTCTT+TGG - chr8_4:54297506-54297525 Msa1334020:intron 25.0%
!! ATTTTATAGTATTCTGCTAG+TGG - chr8_4:54297571-54297590 Msa1334020:intron 25.0%
! GAATGTATAAAAAATACCTC+TGG + chr8_4:54297673-54297692 None:intergenic 25.0%
!! GAAAATTGATAACTCTTCTA+TGG - chr8_4:54298024-54298043 Msa1334020:intron 25.0%
! AACATTATACAATTTGATGG+AGG + chr8_4:54298071-54298090 None:intergenic 25.0%
!! TTGTATAATGTTTTACTGTC+AGG - chr8_4:54298079-54298098 Msa1334020:intron 25.0%
! TGATAGAATCTAATTGGTAA+TGG + chr8_4:54298312-54298331 None:intergenic 25.0%
! ATTACCAATTAGATTCTATC+AGG - chr8_4:54298311-54298330 Msa1334020:intron 25.0%
! TTACCAATTAGATTCTATCA+GGG - chr8_4:54298312-54298331 Msa1334020:intron 25.0%
!! TAAGTACCAAATCCTTTTAA+AGG + chr8_4:54298371-54298390 None:intergenic 25.0%
! TTGAACTTGATTAGATATCA+GGG - chr8_4:54298395-54298414 Msa1334020:intron 25.0%
! AATACAAATGGTTAGGATTA+AGG + chr8_4:54298431-54298450 None:intergenic 25.0%
!!! AGACTTTAATTGTTTTGAGT+AGG - chr8_4:54298667-54298686 Msa1334020:intron 25.0%
!!! GACTTTAATTGTTTTGAGTA+GGG - chr8_4:54298668-54298687 Msa1334020:intron 25.0%
!! AGACTTTCATTGTTTTCATT+AGG - chr8_4:54298956-54298975 Msa1334020:intron 25.0%
! ATCTACAGTTCATGAAAAAA+TGG - chr8_4:54299429-54299448 Msa1334020:intron 25.0%
! AACCAAATTTCATATGATCT+TGG - chr8_4:54299497-54299516 Msa1334020:intron 25.0%
! TGTTCCAAATTGATAAACAA+TGG - chr8_4:54299536-54299555 Msa1334020:intron 25.0%
!!! ATTTTGAAATCTGTTGACAA+TGG + chr8_4:54299573-54299592 None:intergenic 25.0%
!! AATTTAGTTCAATACAGTTC+CGG + chr8_4:54299700-54299719 None:intergenic 25.0%
! AAGAAAATCTAATCAACTAG+GGG + chr8_4:54299752-54299771 None:intergenic 25.0%
! TATTCATGAGTATATGAACT+AGG - chr8_4:54299922-54299941 Msa1334020:CDS 25.0%
! TTCTACATGACAATGAATAT+CGG - chr8_4:54299959-54299978 Msa1334020:intron 25.0%
! ACATTTCTTAAACCAAAAAG+TGG - chr8_4:54299982-54300001 Msa1334020:intron 25.0%
AATGGAGAAGATGAATGAAT+TGG + chr8_4:54296926-54296945 None:intergenic 30.0%
! AATGTTTATGGAAGAAGCAT+AGG + chr8_4:54297002-54297021 None:intergenic 30.0%
!!! TTTTTGGGTGCAAATGTTTA+TGG + chr8_4:54297014-54297033 None:intergenic 30.0%
TTTCTACGATGATGAATTCT+GGG - chr8_4:54297066-54297085 Msa1334020:exon 30.0%
TTTAGCTACTGAATTGCAAA+AGG - chr8_4:54297223-54297242 Msa1334020:intron 30.0%
TTAGCTACTGAATTGCAAAA+GGG - chr8_4:54297224-54297243 Msa1334020:intron 30.0%
GTTTGGATTGTGATAAAAGA+TGG - chr8_4:54297250-54297269 Msa1334020:intron 30.0%
AAGCACTTAAGAAACTGTTT+GGG + chr8_4:54297925-54297944 None:intergenic 30.0%
TAAGCACTTAAGAAACTGTT+TGG + chr8_4:54297926-54297945 None:intergenic 30.0%
ATCATCCAAAACAAGCTTAA+GGG + chr8_4:54297984-54298003 None:intergenic 30.0%
! GCATAAATAGACCATTTTCA+AGG + chr8_4:54298268-54298287 None:intergenic 30.0%
ATTCCCTGATAGAATCTAAT+TGG + chr8_4:54298318-54298337 None:intergenic 30.0%
GTTGAACTTGATTAGATATC+AGG - chr8_4:54298394-54298413 Msa1334020:intron 30.0%
! CCTAACCATTTGTATTGATA+CGG - chr8_4:54298435-54298454 Msa1334020:intron 30.0%
! CTAACCATTTGTATTGATAC+GGG - chr8_4:54298436-54298455 Msa1334020:intron 30.0%
ATTTCCCGTATCAATACAAA+TGG + chr8_4:54298443-54298462 None:intergenic 30.0%
CTTTATATATGATCCATGCT+AGG - chr8_4:54298589-54298608 Msa1334020:intron 30.0%
! TTTACCTACTCACCTAATTT+TGG - chr8_4:54298716-54298735 Msa1334020:intron 30.0%
!! TCTCTAAGACTTCATATCAT+GGG + chr8_4:54298765-54298784 None:intergenic 30.0%
!! ATCTCTAAGACTTCATATCA+TGG + chr8_4:54298766-54298785 None:intergenic 30.0%
! TCAATAAGACTCATTTTGCA+GGG + chr8_4:54298878-54298897 None:intergenic 30.0%
! ATCAATAAGACTCATTTTGC+AGG + chr8_4:54298879-54298898 None:intergenic 30.0%
! CTTATTGATGACAGTAGTAA+TGG - chr8_4:54298890-54298909 Msa1334020:intron 30.0%
TGATTAATAGGACCCAAATT+TGG + chr8_4:54299019-54299038 None:intergenic 30.0%
TAAGACTTCCTAATTATCAC+TGG + chr8_4:54299055-54299074 None:intergenic 30.0%
TAGGGTAACTATCATAATCA+TGG - chr8_4:54299307-54299326 Msa1334020:intron 30.0%
GACCAAGATCATATGAAATT+TGG + chr8_4:54299502-54299521 None:intergenic 30.0%
CGTACCATTGTTTATCAATT+TGG + chr8_4:54299543-54299562 None:intergenic 30.0%
! GATCTAGGTTTGGTTATATT+TGG - chr8_4:54299635-54299654 Msa1334020:CDS 30.0%
!! GTTTCCATAAACTTGTTATC+CGG - chr8_4:54299678-54299697 Msa1334020:intron 30.0%
! AAATTGTTTTCTCCGATGTT+TGG + chr8_4:54299808-54299827 None:intergenic 30.0%
! AACATCGGAGAAAACAATTT+TGG - chr8_4:54299808-54299827 Msa1334020:intron 30.0%
!!! ATTTTAGAGTGCCTATAACT+TGG + chr8_4:54299894-54299913 None:intergenic 30.0%
TTCATGTACAATTTCTTTGC+TGG + chr8_4:54300081-54300100 None:intergenic 30.0%
AAGAAATTGTACATGAAGAG+CGG - chr8_4:54300084-54300103 Msa1334020:intron 30.0%
CTTTCAATCACCTAATTTGA+TGG - chr8_4:54300186-54300205 Msa1334020:CDS 30.0%
GAAATGAAGGAAAACTAATG+AGG + chr8_4:54300298-54300317 None:intergenic 30.0%
!!! TGTCATTTTTGTTGTGTTCG+TGG + chr8_4:54296876-54296895 None:intergenic 35.0%
!!! CAAAGAGGTGTCGATTTTTT+GGG + chr8_4:54297029-54297048 None:intergenic 35.0%
!!! TCAAAGAGGTGTCGATTTTT+TGG + chr8_4:54297030-54297049 None:intergenic 35.0%
CTTTCTACGATGATGAATTC+TGG - chr8_4:54297065-54297084 Msa1334020:exon 35.0%
ATGGAGTGAAAAAACTCACT+TGG + chr8_4:54297150-54297169 None:intergenic 35.0%
TTAGGATCATGCTAAGTACT+TGG - chr8_4:54297297-54297316 Msa1334020:intron 35.0%
AGGCTAGATAAATGTGACAT+AGG + chr8_4:54297409-54297428 None:intergenic 35.0%
AGTCTTCCTGATGAAATTGT+AGG - chr8_4:54297640-54297659 Msa1334020:intron 35.0%
GTCTTCCTGATGAAATTGTA+GGG - chr8_4:54297641-54297660 Msa1334020:intron 35.0%
TTCATCCCTACAATTTCATC+AGG + chr8_4:54297649-54297668 None:intergenic 35.0%
ATTTGTGTTTATGTCCTGTC+CGG - chr8_4:54297717-54297736 Msa1334020:intron 35.0%
! ATAAGCCTTTGTCGTTTATC+CGG + chr8_4:54297739-54297758 None:intergenic 35.0%
GTTGTTTACATAAGCTGTCA+TGG - chr8_4:54297835-54297854 Msa1334020:intron 35.0%
GATCATCCAAAACAAGCTTA+AGG + chr8_4:54297985-54298004 None:intergenic 35.0%
AAAGTCAGTTGCTCGTAATT+GGG - chr8_4:54298199-54298218 Msa1334020:intron 35.0%
! TGTTTTCACTGCCTTGAAAA+TGG - chr8_4:54298254-54298273 Msa1334020:intron 35.0%
!! AATCTAATTGGTAATGGCAG+TGG + chr8_4:54298306-54298325 None:intergenic 35.0%
TCAGGGAATTCAATTGTACT+TGG - chr8_4:54298329-54298348 Msa1334020:intron 35.0%
! TCAATTGTACTTGGAAGTGT+TGG - chr8_4:54298338-54298357 Msa1334020:intron 35.0%
! CTTGTGCCTTTAAAAGGATT+TGG - chr8_4:54298362-54298381 Msa1334020:intron 35.0%
CCGTATCAATACAAATGGTT+AGG + chr8_4:54298438-54298457 None:intergenic 35.0%
GAAATGAACACGTGTAAAGA+AGG - chr8_4:54298458-54298477 Msa1334020:intron 35.0%
!!! GGTCCACATAAGTTTTGATT+TGG - chr8_4:54298479-54298498 Msa1334020:intron 35.0%
CCTCCAAATCAAAACTTATG+TGG + chr8_4:54298485-54298504 None:intergenic 35.0%
!!! CCACATAAGTTTTGATTTGG+AGG - chr8_4:54298482-54298501 Msa1334020:intron 35.0%
! TGATTTGGAGGATAGTTCAT+AGG - chr8_4:54298494-54298513 Msa1334020:intron 35.0%
TTGACCAAAATTAGGTGAGT+AGG + chr8_4:54298723-54298742 None:intergenic 35.0%
TTTACCTGCTCACCAAATTT+GGG - chr8_4:54299004-54299023 Msa1334020:intron 35.0%
TTGCATGTCCAGTGATAATT+AGG - chr8_4:54299044-54299063 Msa1334020:intron 35.0%
CGCAACATGAAAAACATAAC+TGG + chr8_4:54299344-54299363 None:intergenic 35.0%
ACAGGCAGTCAAATAAAAAC+AGG + chr8_4:54299459-54299478 None:intergenic 35.0%
GATCGACGTTACAAATTTAC+AGG + chr8_4:54299477-54299496 None:intergenic 35.0%
AGTTCCGGATAACAAGTTTA+TGG + chr8_4:54299685-54299704 None:intergenic 35.0%
CCTATAACTTGGAATCTACA+TGG + chr8_4:54299883-54299902 None:intergenic 35.0%
CCATGTAGATTCCAAGTTAT+AGG - chr8_4:54299880-54299899 Msa1334020:CDS 35.0%
ATTGTCATGTAGAAATCCCA+GGG + chr8_4:54299953-54299972 None:intergenic 35.0%
!! GAGTCAATGTAACCACTTTT+TGG + chr8_4:54299997-54300016 None:intergenic 35.0%
TCCATATTTGTGTGTCTTTC+AGG - chr8_4:54300015-54300034 Msa1334020:intron 35.0%
AGAAATTGTACATGAAGAGC+GGG - chr8_4:54300085-54300104 Msa1334020:intron 35.0%
GGAGAAGATGAATGAATTGG+AGG + chr8_4:54296923-54296942 None:intergenic 40.0%
TTCAGCGATTGTGATCAAAG+AGG + chr8_4:54297044-54297063 None:intergenic 40.0%
CAATTTCGTCCAGACACTTA+CGG - chr8_4:54297121-54297140 Msa1334020:CDS 40.0%
! GAATTGCAAAAGGGTGTGTT+TGG - chr8_4:54297233-54297252 Msa1334020:intron 40.0%
CGTGTTTGTCAAGTTCTGTT+AGG - chr8_4:54297279-54297298 Msa1334020:intron 40.0%
! ACGTGAGTTTGAAGCACTTA+AGG - chr8_4:54297324-54297343 Msa1334020:intron 40.0%
! AACAAGCTTAAGGGCATGTA+TGG + chr8_4:54297975-54297994 None:intergenic 40.0%
!! ACATGCCCTTAAGCTTGTTT+TGG - chr8_4:54297976-54297995 Msa1334020:intron 40.0%
! ATGTTTTACTGTCAGGCTAG+TGG - chr8_4:54298086-54298105 Msa1334020:intron 40.0%
TAGTGGAGCTGATACTACAA+GGG - chr8_4:54298103-54298122 Msa1334020:intron 40.0%
CTAGAGAGTTGCACAGAAAT+GGG - chr8_4:54298150-54298169 Msa1334020:intron 40.0%
CAAAGTCAGTTGCTCGTAAT+TGG - chr8_4:54298198-54298217 Msa1334020:intron 40.0%
AAGTCAGTTGCTCGTAATTG+GGG - chr8_4:54298200-54298219 Msa1334020:intron 40.0%
!! GTTGGTCTTGTGCCTTTAAA+AGG - chr8_4:54298356-54298375 Msa1334020:intron 40.0%
GAGGATAGTTCATAGGTTAG+AGG - chr8_4:54298501-54298520 Msa1334020:intron 40.0%
ATGATCCATGCTAGGAGTTA+AGG - chr8_4:54298597-54298616 Msa1334020:intron 40.0%
TGATCCATGCTAGGAGTTAA+GGG - chr8_4:54298598-54298617 Msa1334020:intron 40.0%
GATAGCCAACTTTGTCTAGT+CGG - chr8_4:54298641-54298660 Msa1334020:intron 40.0%
! ACTAGACGAAGTTGGTTACA+TGG + chr8_4:54298930-54298949 None:intergenic 40.0%
ATGTAACCAACTTCGTCTAG+TGG - chr8_4:54298929-54298948 Msa1334020:intron 40.0%
TGTAACCAACTTCGTCTAGT+GGG - chr8_4:54298930-54298949 Msa1334020:intron 40.0%
CTTTACCTGCTCACCAAATT+TGG - chr8_4:54299003-54299022 Msa1334020:intron 40.0%
! TCAACGAGACTCGTTTTGTA+GGG + chr8_4:54299172-54299191 None:intergenic 40.0%
! TTTCTAGCAGACAAGTCTCT+TGG + chr8_4:54299222-54299241 None:intergenic 40.0%
AGCATGTCTTGATGTTTGTG+AGG - chr8_4:54299404-54299423 Msa1334020:intron 40.0%
GATCTTGGTCTCGAACATAA+TGG - chr8_4:54299512-54299531 Msa1334020:intron 40.0%
! GACTGGAGTTTTCTATCACA+AGG + chr8_4:54299602-54299621 None:intergenic 40.0%
! GTTATATTTGGCTCGCAGTA+GGG - chr8_4:54299647-54299666 Msa1334020:CDS 40.0%
! TTATATTTGGCTCGCAGTAG+GGG - chr8_4:54299648-54299667 Msa1334020:CDS 40.0%
!! TGTGTGATGGTAATGGTGTT+TGG + chr8_4:54299729-54299748 None:intergenic 40.0%
TGCCATGAAGAACCAAACAT+CGG - chr8_4:54299793-54299812 Msa1334020:intron 40.0%
CATTGTCATGTAGAAATCCC+AGG + chr8_4:54299954-54299973 None:intergenic 40.0%
GCCTGAAAGACACACAAATA+TGG + chr8_4:54300019-54300038 None:intergenic 40.0%
!! CTTTGCTGGTTCATTGTCAA+CGG + chr8_4:54300067-54300086 None:intergenic 40.0%
CACGACAACACCATCAAATT+AGG + chr8_4:54300199-54300218 None:intergenic 40.0%
!! ATTTGATGGTGTTGTCGTGT+CGG - chr8_4:54300200-54300219 Msa1334020:CDS 40.0%
CCATATTAACACAGTCACAC+GGG + chr8_4:54300230-54300249 None:intergenic 40.0%
GCCATATTAACACAGTCACA+CGG + chr8_4:54300231-54300250 None:intergenic 40.0%
GTCTGGACGAAATTGGTTGA+AGG + chr8_4:54297116-54297135 None:intergenic 45.0%
CGTAAGTGTCTGGACGAAAT+TGG + chr8_4:54297123-54297142 None:intergenic 45.0%
! CACTTAAGGAGCGTGTTTCA+GGG - chr8_4:54297338-54297357 Msa1334020:intron 45.0%
GCGTGTTTCAGGGAAAAAGA+CGG - chr8_4:54297348-54297367 Msa1334020:intron 45.0%
CGTGTTTCAGGGAAAAAGAC+GGG - chr8_4:54297349-54297368 Msa1334020:intron 45.0%
ATTCTGCTAGTGGAGAAGAC+AGG - chr8_4:54297581-54297600 Msa1334020:intron 45.0%
TTCTGCTAGTGGAGAAGACA+GGG - chr8_4:54297582-54297601 Msa1334020:intron 45.0%
AATTGTAGGGATGAAGCCAG+AGG - chr8_4:54297654-54297673 Msa1334020:intron 45.0%
AAGCTGTCATGGAGAGCTTA+TGG - chr8_4:54297846-54297865 Msa1334020:intron 45.0%
CTAGTGGAGCTGATACTACA+AGG - chr8_4:54298102-54298121 Msa1334020:intron 45.0%
GCTAGAGAGTTGCACAGAAA+TGG - chr8_4:54298149-54298168 Msa1334020:intron 45.0%
AGAGTTGCACAGAAATGGGT+TGG - chr8_4:54298154-54298173 Msa1334020:intron 45.0%
AACACCCTTAACTCCTAGCA+TGG + chr8_4:54298605-54298624 None:intergenic 45.0%
CTTCTCCGACTAGACAAAGT+TGG + chr8_4:54298649-54298668 None:intergenic 45.0%
! CTTTTCCCACTAGACGAAGT+TGG + chr8_4:54298938-54298957 None:intergenic 45.0%
! GTCAACGAGACTCGTTTTGT+AGG + chr8_4:54299173-54299192 None:intergenic 45.0%
TAGCAGACAAGTCTCTTGGA+AGG + chr8_4:54299218-54299237 None:intergenic 45.0%
AGAAAACTCCAGTCCAGAAC+TGG - chr8_4:54299608-54299627 Msa1334020:CDS 45.0%
! AACTGGCTTCGATCTAGGTT+TGG - chr8_4:54299625-54299644 Msa1334020:CDS 45.0%
! GGTTATATTTGGCTCGCAGT+AGG - chr8_4:54299646-54299665 Msa1334020:CDS 45.0%
! TATATTTGGCTCGCAGTAGG+GGG - chr8_4:54299649-54299668 Msa1334020:CDS 45.0%
! AATCAACTAGGGGTGTGTGA+TGG + chr8_4:54299742-54299761 None:intergenic 45.0%
!! CTCCGATGTTTGGTTCTTCA+TGG + chr8_4:54299798-54299817 None:intergenic 45.0%
ATATGAACTAGGCAAGACCC+TGG - chr8_4:54299933-54299952 Msa1334020:CDS 45.0%
TATGAACTAGGCAAGACCCT+GGG - chr8_4:54299934-54299953 Msa1334020:CDS 45.0%
GTTCATTGTCAACGGCAACA+TGG + chr8_4:54300059-54300078 None:intergenic 45.0%
ATGAGAGTGATGAACCTGCA+TGG - chr8_4:54300115-54300134 Msa1334020:intron 45.0%
ATCCATAGCAGAAGTCTTCG+CGG + chr8_4:54300162-54300181 None:intergenic 45.0%
CGAAGACTTCTGCTATGGAT+GGG - chr8_4:54300162-54300181 Msa1334020:CDS 45.0%
!! TTTGATGGTGTTGTCGTGTC+GGG - chr8_4:54300201-54300220 Msa1334020:CDS 45.0%
CCCGTGTGACTGTGTTAATA+TGG - chr8_4:54300227-54300246 Msa1334020:CDS 45.0%
GGAAAACTAATGAGGCAACG+TGG + chr8_4:54300290-54300309 None:intergenic 45.0%
GAAGGAACGAACACGAAGAG+AGG + chr8_4:54297098-54297117 None:intergenic 50.0%
ACTTGGACTCCGTAAGTGTC+TGG + chr8_4:54297133-54297152 None:intergenic 50.0%
! GCACTTAAGGAGCGTGTTTC+AGG - chr8_4:54297337-54297356 Msa1334020:intron 50.0%
GGAGAAGACAGGGTTGTAGT+TGG - chr8_4:54297592-54297611 Msa1334020:intron 50.0%
! CCTTTGTCGTTTATCCGGAC+AGG + chr8_4:54297734-54297753 None:intergenic 50.0%
CCTGTCCGGATAAACGACAA+AGG - chr8_4:54297731-54297750 Msa1334020:intron 50.0%
! AGGACCCAAATTTGGTGAGC+AGG + chr8_4:54299011-54299030 None:intergenic 50.0%
! AGTCTCTTGGAAGGCTTGGT+CGG + chr8_4:54299209-54299228 None:intergenic 50.0%
GACAAGTCTCTTGGAAGGCT+TGG + chr8_4:54299213-54299232 None:intergenic 50.0%
! TCCAGAACTGGCTTCGATCT+AGG - chr8_4:54299620-54299639 Msa1334020:CDS 50.0%
ACCTAGATCGAAGCCAGTTC+TGG + chr8_4:54299624-54299643 None:intergenic 50.0%
! ATATTTGGCTCGCAGTAGGG+GGG - chr8_4:54299650-54299669 Msa1334020:CDS 50.0%
! CTAGGGGTGTGTGATGGTAA+TGG + chr8_4:54299736-54299755 None:intergenic 50.0%
GCGAAGACTTCTGCTATGGA+TGG - chr8_4:54300161-54300180 Msa1334020:CDS 50.0%
AAATATGTGCGGCGAGTGCA+AGG + chr8_4:54300490-54300509 None:intergenic 50.0%
! GTCTCTTGGAAGGCTTGGTC+GGG + chr8_4:54299208-54299227 None:intergenic 55.0%
!! GATCGAAGCCAGTTCTGGAC+TGG + chr8_4:54299619-54299638 None:intergenic 55.0%
GAGTGATGAACCTGCATGGC+AGG - chr8_4:54300119-54300138 Msa1334020:intron 55.0%
ATGAACCTGCATGGCAGGCA+AGG - chr8_4:54300124-54300143 Msa1334020:CDS 55.0%
AGAAACCTTGCCTGCCATGC+AGG + chr8_4:54300132-54300151 None:intergenic 55.0%
GACCGCGAAGACTTCTGCTA+TGG - chr8_4:54300157-54300176 Msa1334020:CDS 55.0%
! TTGGAAGGCTTGGTCGGGAG+AGG + chr8_4:54299203-54299222 None:intergenic 60.0%
GGCTCGCAGTAGGGGGGATT+CGG - chr8_4:54299656-54299675 Msa1334020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54296763 54300510 54296763 ID=Msa1334020;Name=Msa1334020
chr8_4 mRNA 54296763 54300510 54296763 ID=Msa1334020-mRNA-1;Parent=Msa1334020;Name=Msa1334020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=127|1|1|1|1|1|5|310|265
chr8_4 exon 54296763 54297236 54296763 ID=Msa1334020-mRNA-1:exon:16892;Parent=Msa1334020-mRNA-1
chr8_4 exon 54299052 54299172 54299052 ID=Msa1334020-mRNA-1:exon:16891;Parent=Msa1334020-mRNA-1
chr8_4 exon 54299598 54299693 54299598 ID=Msa1334020-mRNA-1:exon:16890;Parent=Msa1334020-mRNA-1
chr8_4 exon 54299817 54299972 54299817 ID=Msa1334020-mRNA-1:exon:16889;Parent=Msa1334020-mRNA-1
chr8_4 exon 54300123 54300510 54300123 ID=Msa1334020-mRNA-1:exon:16888;Parent=Msa1334020-mRNA-1
chr8_4 five_prime_UTR 54300384 54300510 54300384 ID=Msa1334020-mRNA-1:five_prime_utr;Parent=Msa1334020-mRNA-1
chr8_4 CDS 54300123 54300383 54300123 ID=Msa1334020-mRNA-1:cds;Parent=Msa1334020-mRNA-1
chr8_4 CDS 54299817 54299972 54299817 ID=Msa1334020-mRNA-1:cds;Parent=Msa1334020-mRNA-1
chr8_4 CDS 54299598 54299693 54299598 ID=Msa1334020-mRNA-1:cds;Parent=Msa1334020-mRNA-1
chr8_4 CDS 54299052 54299172 54299052 ID=Msa1334020-mRNA-1:cds;Parent=Msa1334020-mRNA-1
chr8_4 CDS 54297073 54297236 54297073 ID=Msa1334020-mRNA-1:cds;Parent=Msa1334020-mRNA-1
chr8_4 three_prime_UTR 54296763 54297072 54296763 ID=Msa1334020-mRNA-1:three_prime_utr;Parent=Msa1334020-mRNA-1
Gene Sequence

>Msa1334020

ATGACACTCATTTCTTCACTCTGTTCTTTTCCTCCAATTCATTCATCTTCTCCATTTTCAAATTCTGCATTAACATGTTCAACTTCTAACCTTAGAATTCAATTTCAATCCTATGCTTCTTCCATAAACATTTGCACCCAAAAAATCGACACCTCTTTGATCACAATCGCTGAATCTTTCTACGATGATGAATTCTGGGCTGCTTCCTCTCTTCGTGTTCGTTCCTTCAACCAATTTCGTCCAGACACTTACGGAGTCCAAGATCATGCTAAGTACTTGGCTGAACGTGAGTTTGAAGCACTTAAGGAGCGTGTTTCAGGGAAAAAGACGGGCTTTAGAAGAGTTTCTTGCATAAATGCTTCTCTTCCTATGTCACATTTATCTAGCCTCTATGATGATTTATGTTCTTCATGTAAGTATTCTGCTAGTGGAGAAGACAGGGTTGTAGTTGGTTCTCTTGATCTTAATCAGTGCTTGAGTCTTCCTGATGAAATTGTAGGGATGAAGCCAGAGGCTAGTGGAGCTGATACTACAAGGGCGTATCTTAGTAATGTATGTGTTGCTAGAGAGTTGCACAGAAATGGGTTGGCATATGAACTTCTTGAAAAGTCAAAGTCAGTTGCTCGTAATTGGGGCATAACAGATTTGTACGTCCATGTTGCCGTTGACAATGAACCAGCAAAGAAATTGTACATGAAGAGCGGGTTTGTTTATGAGAGTGATGAACCTGCATGGCAGGCAAGGTTTCTTGATCGACCGCGAAGACTTCTGCTATGGATGGGTCTTTCAATCACCTAA

Protein sequence

>Msa1334020

MTLISSLCSFPPIHSSSPFSNSALTCSTSNLRIQFQSYASSINICTQKIDTSLITIAESFYDDEFWAASSLRVRSFNQFRPDTYGVQDHAKYLAEREFEALKERVSGKKTGFRRVSCINASLPMSHLSSLYDDLCSSCKYSASGEDRVVVGSLDLNQCLSLPDEIVGMKPEASGADTTRAYLSNVCVARELHRNGLAYELLEKSKSVARNWGITDLYVHVAVDNEPAKKLYMKSGFVYESDEPAWQARFLDRPRRLLLWMGLSIT*