AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348240 MtrunA17_Chr3g0122151 98.621 435 6 0 1 435 148 582 0.0 900
Msa1348240 MtrunA17_Chr1g0190941 29.654 462 288 9 1 432 109 563 9.55e-63 212
Msa1348240 MtrunA17_Chr6g0466641 94.000 50 3 0 73 122 40 89 5.25e-27 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348240 AT4G14210.1 89.401 434 46 0 1 434 130 563 0.0 829
Msa1348240 AT4G14210.3 89.401 434 46 0 1 434 130 563 0.0 829
Msa1348240 AT4G14210.2 89.401 434 46 0 1 434 130 563 0.0 829
Msa1348240 AT3G04870.3 29.032 465 293 9 1 435 94 551 1.09e-60 207
Msa1348240 AT3G04870.1 29.032 465 293 9 1 435 94 551 1.09e-60 207
Msa1348240 AT3G04870.4 29.032 465 293 9 1 435 94 551 1.09e-60 207
Msa1348240 AT3G04870.2 29.032 465 293 9 1 435 94 551 1.09e-60 207

Find 123 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGGTGCTGTTCTTTC+TGG 0.035606 tig0010244:-62266 Msa1348240:CDS
TGCATAAATTTAAAAGAAAA+AGG 0.170173 tig0010244:+61475 None:intergenic
CCTAATGTGCAGAACCTATT+TGG 0.185482 tig0010244:-66247 Msa1348240:CDS
CCAAATAGGTTCTGCACATT+AGG 0.214847 tig0010244:+66247 None:intergenic
AAAAGATTTGAAGAAAATTC+TGG 0.216400 tig0010244:-61757 Msa1348240:three_prime_UTR
GGACGACACGGTTCACAATT+TGG 0.225775 tig0010244:+62359 None:intergenic
GAATGTCAAAACCAGGAATA+TGG 0.236690 tig0010244:-65385 Msa1348240:intron
CATCAGGGTTGATGAAGTTT+AGG 0.247509 tig0010244:+64435 None:intergenic
TTCTCCAATCTCTGGAAATA+AGG 0.270191 tig0010244:+63813 None:intergenic
CAGGTTCCCGACAAATATTT+AGG 0.277509 tig0010244:-61639 Msa1348240:three_prime_UTR
GTCCTTCCATCTCCGTTAAA+TGG 0.287399 tig0010244:-66124 Msa1348240:intron
ATTGGCATACAAAGTCTTTC+AGG 0.290671 tig0010244:+64126 None:intergenic
AGCTTTAAACCGATTTCTTC+AGG 0.321734 tig0010244:-64387 Msa1348240:intron
CATGGCTACAAAGAAAATAA+AGG 0.325248 tig0010244:+61548 None:intergenic
ATCAGGGTTGATGAAGTTTA+GGG 0.330792 tig0010244:+64436 None:intergenic
TAATACCGAGTTCTCCAAAT+AGG 0.340651 tig0010244:+66233 None:intergenic
TGTTGATCATATTAAGTCCT+TGG 0.349779 tig0010244:-64103 Msa1348240:CDS
CATTGCATTGAAAGTTCATC+AGG 0.356309 tig0010244:+64419 None:intergenic
AACGGAGATGGAAGGACTTC+GGG 0.360693 tig0010244:+66130 None:intergenic
GGTTCCTTATTTCCAGAGAT+TGG 0.362086 tig0010244:-63817 Msa1348240:CDS
TGGAAGGTGCTGTTCTTTCT+GGG 0.364685 tig0010244:-62265 Msa1348240:CDS
TTACAAAGATCTCCTATAGA+AGG 0.366307 tig0010244:-62335 Msa1348240:CDS
GAGAAAATCAAATTTGCAAT+TGG 0.368454 tig0010244:-65326 Msa1348240:CDS
AGCTTCTTCTTCCTGAGAAC+TGG 0.374557 tig0010244:-63845 Msa1348240:CDS
CAGAGATTGGAGAAATTAGT+TGG 0.375058 tig0010244:-63804 Msa1348240:CDS
TCTTACAACTTACCATTTAA+CGG 0.376250 tig0010244:+66112 None:intergenic
TCATATCAACTTTGAGGACT+TGG 0.379367 tig0010244:-61718 Msa1348240:three_prime_UTR
TGTCGGCATATACACTTAGA+AGG 0.381014 tig0010244:+63014 None:intergenic
ATAGAAGGTTTCTATTTAGC+TGG 0.382408 tig0010244:-62320 Msa1348240:CDS
AGGGCTCACATTTCATGTAT+TGG 0.386920 tig0010244:+61568 None:intergenic
CAAATAGGTTCTGCACATTA+GGG 0.391703 tig0010244:+66248 None:intergenic
AGGTTCCCGACAAATATTTA+GGG 0.393381 tig0010244:-61638 Msa1348240:three_prime_UTR
GCTAAATAGAAACCTTCTAT+AGG 0.394425 tig0010244:+62323 None:intergenic
TTCGGAGCTACTTGCTGCTC+GGG 0.394477 tig0010244:-61819 Msa1348240:CDS
TCCAGCTATGCTTGGTGGAC+AGG 0.394576 tig0010244:-65297 Msa1348240:CDS
CCGACAAATATTTAGGGAAA+AGG 0.396111 tig0010244:-61632 Msa1348240:three_prime_UTR
AGCTCCAACATAGACTGGTT+TGG 0.397906 tig0010244:+62671 None:intergenic
AATTTCATCAGGGAAGAGTT+TGG 0.406914 tig0010244:+62574 None:intergenic
GTTGATCATATTAAGTCCTT+GGG 0.407750 tig0010244:-64102 Msa1348240:CDS
GCTCCAACATAGACTGGTTT+GGG 0.410701 tig0010244:+62672 None:intergenic
TGGTCTGCAGAAATTTCATC+AGG 0.414527 tig0010244:+62563 None:intergenic
TTCTGGGAAGCTTTGTGCAC+AGG 0.415482 tig0010244:-62249 Msa1348240:CDS
CAACTAATTTCTCCAATCTC+TGG 0.419741 tig0010244:+63805 None:intergenic
TTTGCTATGCCAAGCAAGCC+TGG 0.419808 tig0010244:-66175 Msa1348240:CDS
TTCTTCCTGAGAACTGGAAA+GGG 0.422658 tig0010244:-63839 Msa1348240:CDS
AAAGATTTGAAGAAAATTCT+GGG 0.424629 tig0010244:-61756 Msa1348240:three_prime_UTR
ATGATCACCTTCTCTTTAGC+AGG 0.428507 tig0010244:-63263 Msa1348240:intron
GCCTGTCCACCAAGCATAGC+TGG 0.434812 tig0010244:+65296 None:intergenic
GGACTTCTTCCAGCTATGCT+TGG 0.441227 tig0010244:-65305 Msa1348240:CDS
CAAAGAATGGATGAGAAAAC+AGG 0.441574 tig0010244:-65243 Msa1348240:intron
ATGGCTACAAAGAAAATAAA+GGG 0.441842 tig0010244:+61549 None:intergenic
TTCTATAGGAGATCTTTGTA+AGG 0.454623 tig0010244:+62337 None:intergenic
GGAACCCCTTTCCAGTTCTC+AGG 0.455491 tig0010244:+63834 None:intergenic
ACTTCATCAGTTACACGTTC+AGG 0.456230 tig0010244:+64479 None:intergenic
CATATCAACTTTGAGGACTT+GGG 0.460746 tig0010244:-61717 Msa1348240:three_prime_UTR
ATTCGGAGCTACTTGCTGCT+CGG 0.471773 tig0010244:-61820 Msa1348240:CDS
CTTCTTCCAGCTATGCTTGG+TGG 0.472514 tig0010244:-65302 Msa1348240:CDS
AACTTACCATTTAACGGAGA+TGG 0.472864 tig0010244:+66118 None:intergenic
ATGATCGCACCTGAAGAAAT+CGG 0.473348 tig0010244:+64378 None:intergenic
CGTAGTGACGAAGATATTAT+CGG 0.474484 tig0010244:-62617 Msa1348240:CDS
CAGTCATAAATGTTCACATA+TGG 0.481049 tig0010244:-63776 Msa1348240:intron
GACTTAATATGATCAACAAT+TGG 0.481712 tig0010244:+64108 None:intergenic
ATGGTATTTCTGTCAAAGAA+TGG 0.490346 tig0010244:-65256 Msa1348240:CDS
CGACATGTCAGTAACTTGTA+AGG 0.497117 tig0010244:-62996 Msa1348240:intron
AATTGATAAAGTGACTCAAA+TGG 0.498942 tig0010244:+61672 None:intergenic
TTGGCATACAAAGTCTTTCA+GGG 0.499721 tig0010244:+64127 None:intergenic
GGAGCATCATATCAACTTTG+AGG 0.501921 tig0010244:-61724 Msa1348240:three_prime_UTR
TTATCAATTCATACGAAGAC+AGG 0.503878 tig0010244:-61658 Msa1348240:three_prime_UTR
GAAAATTCTGGGAAGAGTAC+AGG 0.507260 tig0010244:-61745 Msa1348240:three_prime_UTR
TAACGGAGATGGAAGGACTT+CGG 0.507431 tig0010244:+66129 None:intergenic
CTAAACTCTCCAGGCTTGCT+TGG 0.507606 tig0010244:+66166 None:intergenic
AATGTCAAAACCAGGAATAT+GGG 0.509571 tig0010244:-65384 Msa1348240:intron
CGTGAAATCCATTCTTCGGC+TGG 0.510478 tig0010244:+62638 None:intergenic
ACTAATGGGAAGGTGATTGA+AGG 0.510915 tig0010244:-64003 Msa1348240:CDS
CTTCTTCCTGAGAACTGGAA+AGG 0.513099 tig0010244:-63840 Msa1348240:CDS
TTGTGCACAGGCTATTGTAC+AGG 0.515353 tig0010244:-62237 Msa1348240:intron
ACTACGTGAAATCCATTCTT+CGG 0.523388 tig0010244:+62634 None:intergenic
CATATGTGAACATTTATGAC+TGG 0.523869 tig0010244:+63777 None:intergenic
TCAAATCGACTAAACTCTCC+AGG 0.527394 tig0010244:+66157 None:intergenic
GAGAACTCGGTATTAATGAT+CGG 0.535933 tig0010244:-66225 Msa1348240:CDS
CTAATGGGAAGGTGATTGAA+GGG 0.538438 tig0010244:-64002 Msa1348240:CDS
AAACCAGTCTATGTTGGAGC+TGG 0.540788 tig0010244:-62669 Msa1348240:CDS
GCTTATGTGTCTGCAGCACC+AGG 0.544521 tig0010244:-63976 Msa1348240:intron
TAATGATCGGTTACAATGGA+AGG 0.545218 tig0010244:-66212 Msa1348240:CDS
AAATATTTAGCTTCTATGGA+AGG 0.551139 tig0010244:-62281 Msa1348240:CDS
CAGGAATATGGGCAATCTTG+AGG 0.552469 tig0010244:-65373 Msa1348240:CDS
GGAGAAGCATGGTTCTAAGA+TGG 0.554962 tig0010244:-64169 Msa1348240:CDS
ATATCAACTTTGAGGACTTG+GGG 0.555063 tig0010244:-61716 Msa1348240:three_prime_UTR
GGAAAGATGAAGATGGAGAC+TGG 0.557017 tig0010244:-66917 Msa1348240:CDS
CAGAACCTATTTGGAGAACT+CGG 0.557140 tig0010244:-66238 Msa1348240:CDS
AAACCAGCTCCAACATAGAC+TGG 0.564256 tig0010244:+62666 None:intergenic
GTGATATGATATTACAAGCA+TGG 0.569030 tig0010244:+61530 None:intergenic
GATGGAGACTGGTATGAGAC+GGG 0.571471 tig0010244:-66906 Msa1348240:CDS
TAACCCAAACCAGTCTATGT+TGG 0.572520 tig0010244:-62675 Msa1348240:CDS
GGAATAATGAGATGCTGACC+TGG 0.581967 tig0010244:-65352 Msa1348240:CDS
AAGATGGACTTCACCGCCCA+AGG 0.583196 tig0010244:+64086 None:intergenic
TGAACTTACAGAATATATGT+AGG 0.585494 tig0010244:+66883 None:intergenic
TTTGGCAAGTTCAGACATTG+TGG 0.590839 tig0010244:+62592 None:intergenic
GTATTAATGATCGGTTACAA+TGG 0.600999 tig0010244:-66216 Msa1348240:CDS
CTTACAAGTTACTGACATGT+CGG 0.601594 tig0010244:+62997 None:intergenic
TAATGGGAAGGTGATTGAAG+GGG 0.601605 tig0010244:-64001 Msa1348240:CDS
TCTTCCTGAGAACTGGAAAG+GGG 0.602104 tig0010244:-63838 Msa1348240:CDS
ATTCTTCAATAGGAGAAGCA+TGG 0.604122 tig0010244:-64180 Msa1348240:intron
GCGTATGTTGAGGCTCAAGA+TGG 0.605964 tig0010244:-65275 Msa1348240:CDS
AGATGGAGACTGGTATGAGA+CGG 0.606492 tig0010244:-66907 Msa1348240:CDS
AAGAAAACCTGCTAAAGAGA+AGG 0.606943 tig0010244:+63256 None:intergenic
TCTATAGGAGATCTTTGTAA+GGG 0.608471 tig0010244:+62338 None:intergenic
TACCATTTAACGGAGATGGA+AGG 0.609350 tig0010244:+66122 None:intergenic
TCGGAGCTACTTGCTGCTCG+GGG 0.612611 tig0010244:-61818 Msa1348240:CDS
GGCATACAAAGTCTTTCAGG+GGG 0.615499 tig0010244:+64129 None:intergenic
GATCATATTAAGTCCTTGGG+CGG 0.620960 tig0010244:-64099 Msa1348240:CDS
ACCACGTTGTTAAAACACCA+AGG 0.621505 tig0010244:-62517 Msa1348240:intron
GTCGGCATATACACTTAGAA+GGG 0.623948 tig0010244:+63015 None:intergenic
TATCAACTTTGAGGACTTGG+GGG 0.628380 tig0010244:-61715 Msa1348240:three_prime_UTR
GCTGCATGGAAAGATGAAGA+TGG 0.631551 tig0010244:-66924 Msa1348240:CDS
ATTGCATTGAAAGTTCATCA+GGG 0.637076 tig0010244:+64420 None:intergenic
AGTGTTCATAGCAATGTCAA+AGG 0.649142 tig0010244:-64459 Msa1348240:CDS
TGGCATACAAAGTCTTTCAG+GGG 0.649367 tig0010244:+64128 None:intergenic
GGTCTGCAGAAATTTCATCA+GGG 0.663327 tig0010244:+62564 None:intergenic
TGGTGGACAGGCGTATGTTG+AGG 0.664600 tig0010244:-65285 Msa1348240:CDS
TCGGCATATACACTTAGAAG+GGG 0.674282 tig0010244:+63016 None:intergenic
GATCTTTGTAAGGGACGACA+CGG 0.692042 tig0010244:+62347 None:intergenic
GCATACAAAGTCTTTCAGGG+GGG 0.727840 tig0010244:+64130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTATACTAAAATTTTAAA+TGG + tig0010244:62648-62667 None:intergenic 10.0%
!!! ATTTGAATTTTAATGATAAA+AGG + tig0010244:63398-63417 None:intergenic 10.0%
!! CAAAATATTTAACAAAAAAT+TGG + tig0010244:64687-64706 None:intergenic 10.0%
!!! CAATTTTTTGTTAAATATTT+TGG - tig0010244:64685-64704 Msa1348240:intron 10.0%
!! ATTCTAAATAAATGATTTAC+TGG - tig0010244:62013-62032 Msa1348240:intron 15.0%
!!! ATTCAAAAACAAATTTTATC+AGG + tig0010244:62547-62566 None:intergenic 15.0%
!! ATTGTTTATTCCATATTATA+GGG - tig0010244:63881-63900 Msa1348240:intron 15.0%
!! ATATTATTGAATTCTTCAAT+AGG - tig0010244:64197-64216 Msa1348240:intron 15.0%
!! CAATGAACAATTAATTAATA+GGG + tig0010244:64456-64475 None:intergenic 15.0%
!! ATTACTTTACAAATTGAAAT+AGG + tig0010244:64896-64915 None:intergenic 15.0%
!!! TTATTTCAGTTTTTTGTTAT+TGG - tig0010244:65590-65609 Msa1348240:intron 15.0%
!! GCATAAATTTAAAAGAAAAA+GGG + tig0010244:66914-66933 None:intergenic 15.0%
!! TGCATAAATTTAAAAGAAAA+AGG + tig0010244:66915-66934 None:intergenic 15.0%
!!! TCTGAAATTTAGTTCTTAAT+TGG + tig0010244:61839-61858 None:intergenic 20.0%
!! ATGCTAGTATTTAATCAATA+TGG - tig0010244:62042-62061 Msa1348240:intron 20.0%
!! TATACTACATTTATAGTATG+TGG - tig0010244:62428-62447 Msa1348240:intron 20.0%
!! TTTAGTGTAAATGAAGAAAA+AGG - tig0010244:62603-62622 Msa1348240:CDS 20.0%
!! ATCAATAGATTTATATTCCT+TGG - tig0010244:63204-63223 Msa1348240:intron 20.0%
!! AGCATGAAAATAAAGTAATA+TGG + tig0010244:63437-63456 None:intergenic 20.0%
!! TAAATTATGCACTAAAATTC+TGG - tig0010244:63504-63523 Msa1348240:intron 20.0%
!!! AGAATAAATTTTATCAACCT+TGG - tig0010244:63758-63777 Msa1348240:intron 20.0%
!!! GAATAAATTTTATCAACCTT+GGG - tig0010244:63759-63778 Msa1348240:intron 20.0%
!! CATTGTTTATTCCATATTAT+AGG - tig0010244:63880-63899 Msa1348240:intron 20.0%
!!! TTTTAAACAAACACTTATGT+AGG + tig0010244:64059-64078 None:intergenic 20.0%
!! ACATAAGTGTTTGTTTAAAA+AGG - tig0010244:64059-64078 Msa1348240:CDS 20.0%
!! CAAATGTAATATGAATGAAA+AGG + tig0010244:64085-64104 None:intergenic 20.0%
!!! AAAAGCTTTTTACTAACTAA+TGG - tig0010244:64369-64388 Msa1348240:intron 20.0%
!!! AAAGCTTTTTACTAACTAAT+GGG - tig0010244:64370-64389 Msa1348240:intron 20.0%
!! CCAATGAACAATTAATTAAT+AGG + tig0010244:64457-64476 None:intergenic 20.0%
!! CCTATTAATTAATTGTTCAT+TGG - tig0010244:64454-64473 Msa1348240:CDS 20.0%
!! AAAATTTGAATAGAAATCTG+CGG - tig0010244:64759-64778 Msa1348240:intron 20.0%
!! TATTTACATATCAAATTTGC+AGG - tig0010244:65076-65095 Msa1348240:intron 20.0%
!! TGATTTAACACAAACATATA+CGG + tig0010244:65512-65531 None:intergenic 20.0%
!!! AAAAACTGAAATAATTTGTG+TGG + tig0010244:65584-65603 None:intergenic 20.0%
!!! ACAAAAATATTTAGCTTCTA+TGG - tig0010244:66102-66121 Msa1348240:intron 20.0%
!! AAATTCAGTTTGTAAGATAA+GGG + tig0010244:66329-66348 None:intergenic 20.0%
!! AAAAGATTTGAAGAAAATTC+TGG - tig0010244:66630-66649 Msa1348240:intron 20.0%
!! AAAGATTTGAAGAAAATTCT+GGG - tig0010244:66631-66650 Msa1348240:intron 20.0%
! TGAACTTACAGAATATATGT+AGG + tig0010244:61507-61526 None:intergenic 25.0%
!!! TTTTTTATCTCTCTTAGCAA+TGG + tig0010244:61601-61620 None:intergenic 25.0%
! AGAGATAAAAAAAGTGAAAC+TGG - tig0010244:61609-61628 Msa1348240:three_prime_UTR 25.0%
! AGAACTAAATTTCAGAAAGA+AGG - tig0010244:61843-61862 Msa1348240:intron 25.0%
! TCTTACAACTTACCATTTAA+CGG + tig0010244:62278-62297 None:intergenic 25.0%
! TTAAAGAAACTTTCAACTTC+AGG + tig0010244:62334-62353 None:intergenic 25.0%
!!! AAAATAGAAGGTATTTCATG+TGG + tig0010244:62358-62377 None:intergenic 25.0%
! GTACGTGTTTAAAAAATAGA+AGG + tig0010244:62370-62389 None:intergenic 25.0%
!!! TCTATTTTTTAAACACGTAC+AGG - tig0010244:62370-62389 Msa1348240:CDS 25.0%
! AGTATAACTAAATTGCTCTA+TGG - tig0010244:62685-62704 Msa1348240:CDS 25.0%
! TGAAACAAGATGTGATAAAT+TGG - tig0010244:62773-62792 Msa1348240:intron 25.0%
! ATGTGAAATGAAAACACAAA+TGG - tig0010244:62805-62824 Msa1348240:intron 25.0%
! TGTGAAATGAAAACACAAAT+GGG - tig0010244:62806-62825 Msa1348240:intron 25.0%
!! TTTTTCTTTCTTCACTAATC+TGG - tig0010244:62890-62909 Msa1348240:intron 25.0%
! CATTAAGTAAGAAAATACGT+TGG + tig0010244:62955-62974 None:intergenic 25.0%
!!! ATTGCAAATTTGATTTTCTC+TGG + tig0010244:63061-63080 None:intergenic 25.0%
! GAGAAAATCAAATTTGCAAT+TGG - tig0010244:63061-63080 Msa1348240:intron 25.0%
! AAATCTTGTCAGTTTGTAAA+TGG - tig0010244:63279-63298 Msa1348240:CDS 25.0%
!! TCCTAATAATTTTCACTGAT+GGG - tig0010244:63682-63701 Msa1348240:intron 25.0%
! AACATATTGCAATCTTCTAA+TGG - tig0010244:63795-63814 Msa1348240:CDS 25.0%
! GACTTAATATGATCAACAAT+TGG + tig0010244:64282-64301 None:intergenic 25.0%
!! TTTTAATGCGTGAATTAAGA+TGG + tig0010244:64320-64339 None:intergenic 25.0%
! TGAACAATTAATTAATAGGG+TGG + tig0010244:64453-64472 None:intergenic 25.0%
! TAATTGTTCATTGGAATTCT+TGG - tig0010244:64463-64482 Msa1348240:CDS 25.0%
!! TTTCGTTGTTATTCTGAATT+TGG + tig0010244:64995-65014 None:intergenic 25.0%
!!! TTCTTTTTTGTTGTGTGAAA+TGG - tig0010244:65248-65267 Msa1348240:CDS 25.0%
!!! TATAATTCAAAAGTGCTATC+CGG + tig0010244:65295-65314 None:intergenic 25.0%
! GATTTAACACAAACATATAC+GGG + tig0010244:65511-65530 None:intergenic 25.0%
! TCTGCATTTAACTATTTGTT+TGG - tig0010244:65626-65645 Msa1348240:intron 25.0%
!! TGTGTTTCACTATCTTATTT+AGG - tig0010244:65682-65701 Msa1348240:intron 25.0%
! CTAAACATATACTGAACTTA+TGG - tig0010244:65936-65955 Msa1348240:intron 25.0%
!! AAATATTTAGCTTCTATGGA+AGG - tig0010244:66106-66125 Msa1348240:intron 25.0%
! GAAATTCAGTTTGTAAGATA+AGG + tig0010244:66330-66349 None:intergenic 25.0%
! TTCAACCAAATCAATTACTT+TGG + tig0010244:66403-66422 None:intergenic 25.0%
!!! AAGTAATTGATTTGGTTGAA+TGG - tig0010244:66403-66422 Msa1348240:intron 25.0%
! AATTGATAAAGTGACTCAAA+TGG + tig0010244:66718-66737 None:intergenic 25.0%
!!! GTTCATGATTATTTTTAGTG+TGG - tig0010244:66796-66815 Msa1348240:intron 25.0%
! ATGGCTACAAAGAAAATAAA+GGG + tig0010244:66841-66860 None:intergenic 25.0%
AATGGAAAAAGGTTTACTGA+AGG + tig0010244:61583-61602 None:intergenic 30.0%
GATAAAAAAAGTGAAACTGG+AGG - tig0010244:61612-61631 Msa1348240:three_prime_UTR 30.0%
! AAAATCCCAATGATGGAAAA+AGG + tig0010244:61795-61814 None:intergenic 30.0%
TAAATTTCAGAAAGAAGGCA+TGG - tig0010244:61848-61867 Msa1348240:intron 30.0%
! AAATTTCAGAAAGAAGGCAT+GGG - tig0010244:61849-61868 Msa1348240:intron 30.0%
! TCAAAAGACTTTTGCATGAA+TGG - tig0010244:61901-61920 Msa1348240:intron 30.0%
! CAAAAGACTTTTGCATGAAT+GGG - tig0010244:61902-61921 Msa1348240:intron 30.0%
! TTTTGCATGAATGGGAAATT+TGG - tig0010244:61910-61929 Msa1348240:intron 30.0%
! GTTTTCTTTTTCCCAAAGTT+GGG - tig0010244:62111-62130 Msa1348240:intron 30.0%
! TTTTCTTTTTCCCAAAGTTG+GGG - tig0010244:62112-62131 Msa1348240:intron 30.0%
GTATTAATGATCGGTTACAA+TGG - tig0010244:62171-62190 Msa1348240:intron 30.0%
! AATTTTTGTGCCTATGTGAT+GGG - tig0010244:62452-62471 Msa1348240:intron 30.0%
TTATTCCTTAATCTGAACTC+GGG + tig0010244:62499-62518 None:intergenic 30.0%
GTTATTCCTTAATCTGAACT+CGG + tig0010244:62500-62519 None:intergenic 30.0%
!!! AATGCATTTTGAAGCTATAG+CGG - tig0010244:62574-62593 Msa1348240:CDS 30.0%
GTGAAATGAAAACACAAATG+GGG - tig0010244:62807-62826 Msa1348240:intron 30.0%
AATGTCAAAACCAGGAATAT+GGG - tig0010244:63003-63022 Msa1348240:CDS 30.0%
! ATGGTATTTCTGTCAAAGAA+TGG - tig0010244:63131-63150 Msa1348240:intron 30.0%
TCAGTATCACTAAGATGATT+AGG + tig0010244:63313-63332 None:intergenic 30.0%
ATTTAATATTCTCCCACACT+TGG + tig0010244:63611-63630 None:intergenic 30.0%
GTGAAAATTATTAGGACAGA+CGG + tig0010244:63678-63697 None:intergenic 30.0%
! GTCCTAATAATTTTCACTGA+TGG - tig0010244:63681-63700 Msa1348240:intron 30.0%
TCCCATCAGTGAAAATTATT+AGG + tig0010244:63686-63705 None:intergenic 30.0%
TAGAAGATTGCAATATGTTC+AGG + tig0010244:63794-63813 None:intergenic 30.0%
TCTACTTATTGCAAATAGTC+TGG - tig0010244:63818-63837 Msa1348240:CDS 30.0%
CTACTTATTGCAAATAGTCT+GGG - tig0010244:63819-63838 Msa1348240:CDS 30.0%
ATTGCATTGAAAGTTCATCA+GGG + tig0010244:63970-63989 None:intergenic 30.0%
TGTTGATCATATTAAGTCCT+TGG - tig0010244:64284-64303 Msa1348240:intron 30.0%
GTTGATCATATTAAGTCCTT+GGG - tig0010244:64285-64304 Msa1348240:intron 30.0%
! CTTTTTACTAACTAATGGGA+AGG - tig0010244:64374-64393 Msa1348240:intron 30.0%
! TCCATTTCTTCACAATTTTG+AGG - tig0010244:64488-64507 Msa1348240:CDS 30.0%
TCCTCAAAATTGTGAAGAAA+TGG + tig0010244:64492-64511 None:intergenic 30.0%
!! CAGAATATCCACTGTTTTAA+GGG + tig0010244:64521-64540 None:intergenic 30.0%
! TCAGAATATCCACTGTTTTA+AGG + tig0010244:64522-64541 None:intergenic 30.0%
CATATGTGAACATTTATGAC+TGG + tig0010244:64613-64632 None:intergenic 30.0%
CAGTCATAAATGTTCACATA+TGG - tig0010244:64611-64630 Msa1348240:intron 30.0%
TGTTCACATATGGTAAGTAA+TGG - tig0010244:64621-64640 Msa1348240:intron 30.0%
GAGTTATATTATCCTTTGAC+TGG - tig0010244:64823-64842 Msa1348240:intron 30.0%
AAACTATTACAACCAGTCAA+AGG + tig0010244:64838-64857 None:intergenic 30.0%
!! TTGACTGGTTGTAATAGTTT+TGG - tig0010244:64838-64857 Msa1348240:intron 30.0%
AAGTATATTACTGCTTCAGT+TGG + tig0010244:64927-64946 None:intergenic 30.0%
GTTTGTAATATTTGTCAGTG+AGG - tig0010244:65018-65037 Msa1348240:intron 30.0%
TAAATAGTATGTCAGCATAC+TGG + tig0010244:65062-65081 None:intergenic 30.0%
TAACAAATACATTTGAGTGG+CGG + tig0010244:65423-65442 None:intergenic 30.0%
TGCTAACAAATACATTTGAG+TGG + tig0010244:65426-65445 None:intergenic 30.0%
! TGATGATTTTTGCTTTGCTT+TGG + tig0010244:65847-65866 None:intergenic 30.0%
AAGAAATAATCCAACTCAGT+GGG + tig0010244:65903-65922 None:intergenic 30.0%
AAAGAAATAATCCAACTCAG+TGG + tig0010244:65904-65923 None:intergenic 30.0%
TCTATAGGAGATCTTTGTAA+GGG + tig0010244:66052-66071 None:intergenic 30.0%
TTCTATAGGAGATCTTTGTA+AGG + tig0010244:66053-66072 None:intergenic 30.0%
TTACAAAGATCTCCTATAGA+AGG - tig0010244:66052-66071 Msa1348240:intron 30.0%
GCTAAATAGAAACCTTCTAT+AGG + tig0010244:66067-66086 None:intergenic 30.0%
ATAGAAGGTTTCTATTTAGC+TGG - tig0010244:66067-66086 Msa1348240:intron 30.0%
! ATTCAGGTTAGGTCAATATT+CGG + tig0010244:66287-66306 None:intergenic 30.0%
! TTATATCCACTATTCAGGTT+AGG + tig0010244:66298-66317 None:intergenic 30.0%
TCTTACAAACTGAATTTCTG+AGG - tig0010244:66332-66351 Msa1348240:intron 30.0%
CATATAAGTAGATCATGAAG+CGG + tig0010244:66369-66388 None:intergenic 30.0%
GAACTCCAAAGTAATTGATT+TGG - tig0010244:66395-66414 Msa1348240:intron 30.0%
! CTTGATAGCTAAAACTTTCA+TGG + tig0010244:66458-66477 None:intergenic 30.0%
TTATCAATTCATACGAAGAC+AGG - tig0010244:66729-66748 Msa1348240:intron 30.0%
! CTTTTCCCTAAATATTTGTC+GGG + tig0010244:66757-66776 None:intergenic 30.0%
! CCTTTTCCCTAAATATTTGT+CGG + tig0010244:66758-66777 None:intergenic 30.0%
CATGGCTACAAAGAAAATAA+AGG + tig0010244:66842-66861 None:intergenic 30.0%
GTGATATGATATTACAAGCA+TGG + tig0010244:66860-66879 None:intergenic 30.0%
TCTCTCTTAGCAATGGAAAA+AGG + tig0010244:61594-61613 None:intergenic 35.0%
TCTATACTTTCTTTCTCCTG+TGG + tig0010244:61669-61688 None:intergenic 35.0%
ACTAGTAGAAGGTCAAAGAA+TGG + tig0010244:61718-61737 None:intergenic 35.0%
! CAATGCCTTTTTCCATCATT+GGG - tig0010244:61787-61806 Msa1348240:CDS 35.0%
AAGGATCAAAATCCCAATGA+TGG + tig0010244:61802-61821 None:intergenic 35.0%
AGTTCTTAATTGGATGTGTG+AGG + tig0010244:61829-61848 None:intergenic 35.0%
!!! AGTCTTTTGAGATTGAAGCT+TGG + tig0010244:61891-61910 None:intergenic 35.0%
TAGTTCAATACATGTGCCAA+GGG + tig0010244:61968-61987 None:intergenic 35.0%
ATAGTTCAATACATGTGCCA+AGG + tig0010244:61969-61988 None:intergenic 35.0%
! CGTTTTCTTTTTCCCAAAGT+TGG - tig0010244:62110-62129 Msa1348240:intron 35.0%
CAAATAGGTTCTGCACATTA+GGG + tig0010244:62142-62161 None:intergenic 35.0%
TAATACCGAGTTCTCCAAAT+AGG + tig0010244:62157-62176 None:intergenic 35.0%
GAGAACTCGGTATTAATGAT+CGG - tig0010244:62162-62181 Msa1348240:intron 35.0%
TAATGATCGGTTACAATGGA+AGG - tig0010244:62175-62194 Msa1348240:intron 35.0%
AACTTACCATTTAACGGAGA+TGG + tig0010244:62272-62291 None:intergenic 35.0%
GTTGTAAGACTTTACGTATG+TGG - tig0010244:62289-62308 Msa1348240:CDS 35.0%
! CAATTTTTGTGCCTATGTGA+TGG - tig0010244:62451-62470 Msa1348240:intron 35.0%
AAAAACCCGAGTTCAGATTA+AGG - tig0010244:62491-62510 Msa1348240:intron 35.0%
TCAGATTAAGGAATAACCCT+TGG - tig0010244:62503-62522 Msa1348240:intron 35.0%
TGCTGTGTTAAAACTTCCAA+GGG + tig0010244:62522-62541 None:intergenic 35.0%
ATGCTGTGTTAAAACTTCCA+AGG + tig0010244:62523-62542 None:intergenic 35.0%
AAAACACAAATGGGGATCAA+GGG - tig0010244:62815-62834 Msa1348240:intron 35.0%
GAATGTCAAAACCAGGAATA+TGG - tig0010244:63002-63021 Msa1348240:CDS 35.0%
!! AAATTTGATTTTCTCTGGCC+AGG + tig0010244:63056-63075 None:intergenic 35.0%
CAAAGAATGGATGAGAAAAC+AGG - tig0010244:63144-63163 Msa1348240:intron 35.0%
AATGGATGAGAAAACAGGTA+TGG - tig0010244:63149-63168 Msa1348240:intron 35.0%
TTGTCTTGATTCCATAACTG+TGG - tig0010244:63175-63194 Msa1348240:intron 35.0%
!!! TGAAATTTTCAAGTCACGAC+AGG + tig0010244:63254-63273 None:intergenic 35.0%
TCTTGTCAGTTTGTAAATGG+AGG - tig0010244:63282-63301 Msa1348240:CDS 35.0%
CTTGTCAGTTTGTAAATGGA+GGG - tig0010244:63283-63302 Msa1348240:CDS 35.0%
TTGTCAGTTTGTAAATGGAG+GGG - tig0010244:63284-63303 Msa1348240:CDS 35.0%
!! ATTCTGCGATGAGTTGTTTT+AGG - tig0010244:63338-63357 Msa1348240:intron 35.0%
CACTGATGGGAAATAAAGAA+AGG - tig0010244:63695-63714 Msa1348240:intron 35.0%
TTCAGGAATGCCCTATAATA+TGG + tig0010244:63894-63913 None:intergenic 35.0%
AGTGTTCATAGCAATGTCAA+AGG - tig0010244:63928-63947 Msa1348240:intron 35.0%
!! ATCAGGGTTGATGAAGTTTA+GGG + tig0010244:63954-63973 None:intergenic 35.0%
CATTGCATTGAAAGTTCATC+AGG + tig0010244:63971-63990 None:intergenic 35.0%
!! AGCTTTAAACCGATTTCTTC+AGG - tig0010244:64000-64019 Msa1348240:CDS 35.0%
ATCCAGTGTTTGTGAAACAT+AGG - tig0010244:64143-64162 Msa1348240:CDS 35.0%
ATCCTATGTTTCACAAACAC+TGG + tig0010244:64148-64167 None:intergenic 35.0%
ATTCTTCAATAGGAGAAGCA+TGG - tig0010244:64207-64226 Msa1348240:intron 35.0%
TTGGCATACAAAGTCTTTCA+GGG + tig0010244:64263-64282 None:intergenic 35.0%
ATTGGCATACAAAGTCTTTC+AGG + tig0010244:64264-64283 None:intergenic 35.0%
! GGAAGTCTTATAAACATACC+TGG + tig0010244:64432-64451 None:intergenic 35.0%
!!! AATATCCACTGTTTTAAGGG+AGG + tig0010244:64518-64537 None:intergenic 35.0%
! TTCTCCAATCTCTGGAAATA+AGG + tig0010244:64577-64596 None:intergenic 35.0%
CAACTAATTTCTCCAATCTC+TGG + tig0010244:64585-64604 None:intergenic 35.0%
CAGAGATTGGAGAAATTAGT+TGG - tig0010244:64583-64602 Msa1348240:intron 35.0%
TATATTACTGCTTCAGTTGG+TGG + tig0010244:64924-64943 None:intergenic 35.0%
AAGAAAACCTGCTAAAGAGA+AGG + tig0010244:65134-65153 None:intergenic 35.0%
! CTCTATCTTTTATCCCTTCT+AGG + tig0010244:65180-65199 None:intergenic 35.0%
CTAGAAGGGATAAAAGATAG+AGG - tig0010244:65178-65197 Msa1348240:intron 35.0%
CTTACAAGTTACTGACATGT+CGG + tig0010244:65393-65412 None:intergenic 35.0%
ACTACGTGAAATCCATTCTT+CGG + tig0010244:65756-65775 None:intergenic 35.0%
CGTAGTGACGAAGATATTAT+CGG - tig0010244:65770-65789 Msa1348240:intron 35.0%
AATTTCATCAGGGAAGAGTT+TGG + tig0010244:65816-65835 None:intergenic 35.0%
ACAATGTAGTCGGTTACATT+AGG + tig0010244:65984-66003 None:intergenic 35.0%
TATTGACCTAACCTGAATAG+TGG - tig0010244:66289-66308 Msa1348240:intron 35.0%
!! ACCTGAATAGTGGATATAAG+TGG - tig0010244:66299-66318 Msa1348240:intron 35.0%
TCCACTTATATCCACTATTC+AGG + tig0010244:66303-66322 None:intergenic 35.0%
CGCTTCATGATCTACTTATA+TGG - tig0010244:66367-66386 Msa1348240:intron 35.0%
ATGGACTTTCATATCAACTC+AGG - tig0010244:66422-66441 Msa1348240:intron 35.0%
TGTCTTTAATACGCAGGATT+CGG - tig0010244:66550-66569 Msa1348240:intron 35.0%
! TTGCTTGAGCTATTCTTTTC+TGG + tig0010244:66595-66614 None:intergenic 35.0%
! TCATATCAACTTTGAGGACT+TGG - tig0010244:66669-66688 Msa1348240:intron 35.0%
! CATATCAACTTTGAGGACTT+GGG - tig0010244:66670-66689 Msa1348240:intron 35.0%
! ATATCAACTTTGAGGACTTG+GGG - tig0010244:66671-66690 Msa1348240:intron 35.0%
AGGTTCCCGACAAATATTTA+GGG - tig0010244:66749-66768 Msa1348240:intron 35.0%
CCGACAAATATTTAGGGAAA+AGG - tig0010244:66755-66774 Msa1348240:intron 35.0%
CTTCTACTAGTGTATGCTCT+CGG - tig0010244:61727-61746 Msa1348240:three_prime_UTR 40.0%
!! AAGGCATTGGACTTGATTGT+TGG + tig0010244:61776-61795 None:intergenic 40.0%
! CCAATGATGGAAAAAGGCAT+TGG + tig0010244:61789-61808 None:intergenic 40.0%
! CCAATGCCTTTTTCCATCAT+TGG - tig0010244:61786-61805 Msa1348240:CDS 40.0%
CCAAATAGGTTCTGCACATT+AGG + tig0010244:62143-62162 None:intergenic 40.0%
CCTAATGTGCAGAACCTATT+TGG - tig0010244:62140-62159 Msa1348240:intron 40.0%
CAGAACCTATTTGGAGAACT+CGG - tig0010244:62149-62168 Msa1348240:intron 40.0%
TCAAATCGACTAAACTCTCC+AGG + tig0010244:62233-62252 None:intergenic 40.0%
TACCATTTAACGGAGATGGA+AGG + tig0010244:62268-62287 None:intergenic 40.0%
! AATCTGAACTCGGGTTTTTG+AGG + tig0010244:62490-62509 None:intergenic 40.0%
GAAAACACAAATGGGGATCA+AGG - tig0010244:62814-62833 Msa1348240:intron 40.0%
! CTTCACTAATCTGGTTTGCA+TGG - tig0010244:62899-62918 Msa1348240:intron 40.0%
ATGCTGTGAATGTCAAAACC+AGG - tig0010244:62995-63014 Msa1348240:intron 40.0%
TTGATGAACTGCCACAGTTA+TGG + tig0010244:63189-63208 None:intergenic 40.0%
TATATCACCAGTCAAGGTCA+TGG - tig0010244:63228-63247 Msa1348240:intron 40.0%
!!! TGCGATGAGTTGTTTTAGGA+TGG - tig0010244:63342-63361 Msa1348240:intron 40.0%
CATTATCGTCATCAAGTCAC+TGG + tig0010244:63372-63391 None:intergenic 40.0%
AGTTTCCTTACTTCCAAGTG+TGG - tig0010244:63595-63614 Msa1348240:intron 40.0%
GTTTCCTTACTTCCAAGTGT+GGG - tig0010244:63596-63615 Msa1348240:intron 40.0%
ATTATTAGGACAGACGGCAT+TGG + tig0010244:63672-63691 None:intergenic 40.0%
ACTTCATCAGTTACACGTTC+AGG + tig0010244:63911-63930 None:intergenic 40.0%
!! CATCAGGGTTGATGAAGTTT+AGG + tig0010244:63955-63974 None:intergenic 40.0%
ATGATCGCACCTGAAGAAAT+CGG + tig0010244:64012-64031 None:intergenic 40.0%
!!! TGGTTCTAAGATGGCCTTTT+TGG - tig0010244:64227-64246 Msa1348240:intron 40.0%
!! TCTAAGATGGCCTTTTTGGA+CGG - tig0010244:64231-64250 Msa1348240:intron 40.0%
TGGCATACAAAGTCTTTCAG+GGG + tig0010244:64262-64281 None:intergenic 40.0%
GATCATATTAAGTCCTTGGG+CGG - tig0010244:64288-64307 Msa1348240:intron 40.0%
ACTAATGGGAAGGTGATTGA+AGG - tig0010244:64384-64403 Msa1348240:intron 40.0%
CTAATGGGAAGGTGATTGAA+GGG - tig0010244:64385-64404 Msa1348240:intron 40.0%
TAATGGGAAGGTGATTGAAG+GGG - tig0010244:64386-64405 Msa1348240:intron 40.0%
GATTTCCTCCCTTAAAACAG+TGG - tig0010244:64510-64529 Msa1348240:intron 40.0%
TTCTTCCTGAGAACTGGAAA+GGG - tig0010244:64548-64567 Msa1348240:intron 40.0%
! GGTTCCTTATTTCCAGAGAT+TGG - tig0010244:64570-64589 Msa1348240:intron 40.0%
TGAATAGAAATCTGCGGTTG+TGG - tig0010244:64765-64784 Msa1348240:intron 40.0%
ATAGTATGTCAGCATACTGG+TGG + tig0010244:65059-65078 None:intergenic 40.0%
ATGATCACCTTCTCTTTAGC+AGG - tig0010244:65124-65143 Msa1348240:intron 40.0%
AAACACTTGTGATGCCTAGA+AGG - tig0010244:65163-65182 Msa1348240:intron 40.0%
AACACTTGTGATGCCTAGAA+GGG - tig0010244:65164-65183 Msa1348240:intron 40.0%
CTCTTTCCTTCTTTGCATTC+CGG - tig0010244:65273-65292 Msa1348240:CDS 40.0%
TCGGCATATACACTTAGAAG+GGG + tig0010244:65374-65393 None:intergenic 40.0%
GTCGGCATATACACTTAGAA+GGG + tig0010244:65375-65394 None:intergenic 40.0%
TGTCGGCATATACACTTAGA+AGG + tig0010244:65376-65395 None:intergenic 40.0%
! CGACATGTCAGTAACTTGTA+AGG - tig0010244:65391-65410 Msa1348240:intron 40.0%
! CAATTTGAGACAGTGCTTTC+TGG - tig0010244:65544-65563 Msa1348240:intron 40.0%
TAACCCAAACCAGTCTATGT+TGG - tig0010244:65712-65731 Msa1348240:intron 40.0%
TTTGGCAAGTTCAGACATTG+TGG + tig0010244:65798-65817 None:intergenic 40.0%
GGTCTGCAGAAATTTCATCA+GGG + tig0010244:65826-65845 None:intergenic 40.0%
TGGTCTGCAGAAATTTCATC+AGG + tig0010244:65827-65846 None:intergenic 40.0%
ACCACGTTGTTAAAACACCA+AGG - tig0010244:65870-65889 Msa1348240:intron 40.0%
!!! ACCTTGGTGTTTTAACAACG+TGG + tig0010244:65874-65893 None:intergenic 40.0%
TAGTCGGTTACATTAGGACT+CGG + tig0010244:65978-65997 None:intergenic 40.0%
GTAACCGACTACATTGTTTC+AGG - tig0010244:65987-66006 Msa1348240:intron 40.0%
CTGACCTGAAACAATGTAGT+CGG + tig0010244:65994-66013 None:intergenic 40.0%
GGTTAGGTCAATATTCGGTA+TGG + tig0010244:66282-66301 None:intergenic 40.0%
CATTGCTGTCTTTAATACGC+AGG - tig0010244:66544-66563 Msa1348240:intron 40.0%
! GAAAATTCTGGGAAGAGTAC+AGG - tig0010244:66642-66661 Msa1348240:intron 40.0%
! GGAGCATCATATCAACTTTG+AGG - tig0010244:66663-66682 Msa1348240:intron 40.0%
! TATCAACTTTGAGGACTTGG+GGG - tig0010244:66672-66691 Msa1348240:intron 40.0%
CAGGTTCCCGACAAATATTT+AGG - tig0010244:66748-66767 Msa1348240:intron 40.0%
AGGGCTCACATTTCATGTAT+TGG + tig0010244:66822-66841 None:intergenic 40.0%
GCTGCATGGAAAGATGAAGA+TGG - tig0010244:61463-61482 Msa1348240:three_prime_UTR 45.0%
GGAAAGATGAAGATGGAGAC+TGG - tig0010244:61470-61489 Msa1348240:three_prime_UTR 45.0%
AGATGGAGACTGGTATGAGA+CGG - tig0010244:61480-61499 Msa1348240:three_prime_UTR 45.0%
! CGAGAGCATACACTAGTAGA+AGG + tig0010244:61729-61748 None:intergenic 45.0%
! GTGTATGCTCTCGGTAGTTT+TGG - tig0010244:61736-61755 Msa1348240:three_prime_UTR 45.0%
! ACTGGTCTACAAGCACTGTT+AGG + tig0010244:61942-61961 None:intergenic 45.0%
TTAGGGTAAGCCCCAACTTT+GGG + tig0010244:62125-62144 None:intergenic 45.0%
ATTAGGGTAAGCCCCAACTT+TGG + tig0010244:62126-62145 None:intergenic 45.0%
TAACGGAGATGGAAGGACTT+CGG + tig0010244:62261-62280 None:intergenic 45.0%
GTCCTTCCATCTCCGTTAAA+TGG - tig0010244:62263-62282 Msa1348240:CDS 45.0%
! ACTAATCTGGTTTGCATGGC+TGG - tig0010244:62903-62922 Msa1348240:intron 45.0%
CTCAAGATTGCCCATATTCC+TGG + tig0010244:63016-63035 None:intergenic 45.0%
CAGGAATATGGGCAATCTTG+AGG - tig0010244:63014-63033 Msa1348240:CDS 45.0%
GGAATAATGAGATGCTGACC+TGG - tig0010244:63035-63054 Msa1348240:intron 45.0%
CTTGACTGGTGATATAGCCA+AGG + tig0010244:63224-63243 None:intergenic 45.0%
CTTGGCTATATCACCAGTCA+AGG - tig0010244:63222-63241 Msa1348240:intron 45.0%
TTCTCCCACACTTGGAAGTA+AGG + tig0010244:63603-63622 None:intergenic 45.0%
!! GGAGAAGCATGGTTCTAAGA+TGG - tig0010244:64218-64237 Msa1348240:intron 45.0%
GCATACAAAGTCTTTCAGGG+GGG + tig0010244:64260-64279 None:intergenic 45.0%
GGCATACAAAGTCTTTCAGG+GGG + tig0010244:64261-64280 None:intergenic 45.0%
AGCTTCTTCTTCCTGAGAAC+TGG - tig0010244:64542-64561 Msa1348240:intron 45.0%
CTTCTTCCTGAGAACTGGAA+AGG - tig0010244:64547-64566 Msa1348240:intron 45.0%
TCTTCCTGAGAACTGGAAAG+GGG - tig0010244:64549-64568 Msa1348240:intron 45.0%
GAAATCTGCGGTTGTGGTAT+AGG - tig0010244:64771-64790 Msa1348240:intron 45.0%
CGGAATGCAAAGAAGGAAAG+AGG + tig0010244:65275-65294 None:intergenic 45.0%
TGCTATCCGGAATGCAAAGA+AGG + tig0010244:65282-65301 None:intergenic 45.0%
TTGAGGCTACAACTTTGGCA+TGG + tig0010244:65467-65486 None:intergenic 45.0%
TGCCAAAGTTGTAGCCTCAA+TGG - tig0010244:65467-65486 Msa1348240:intron 45.0%
GACCATTGAGGCTACAACTT+TGG + tig0010244:65472-65491 None:intergenic 45.0%
TTGTAGCCTCAATGGTCTCT+AGG - tig0010244:65475-65494 Msa1348240:intron 45.0%
TGTAGCCTCAATGGTCTCTA+GGG - tig0010244:65476-65495 Msa1348240:intron 45.0%
GCACTGTCTCAAATTGATGC+AGG + tig0010244:65540-65559 None:intergenic 45.0%
CTGAACGTTGCAATGCTGTT+TGG - tig0010244:65655-65674 Msa1348240:intron 45.0%
!! GCTCCAACATAGACTGGTTT+GGG + tig0010244:65718-65737 None:intergenic 45.0%
! AGCTCCAACATAGACTGGTT+TGG + tig0010244:65719-65738 None:intergenic 45.0%
AAACCAGTCTATGTTGGAGC+TGG - tig0010244:65718-65737 Msa1348240:intron 45.0%
AAACCAGCTCCAACATAGAC+TGG + tig0010244:65724-65743 None:intergenic 45.0%
! TTTTTGCACCAGCCGAAGAA+TGG - tig0010244:65741-65760 Msa1348240:intron 45.0%
ACTCAGTGGGACTAAAACCT+TGG + tig0010244:65890-65909 None:intergenic 45.0%
!! AGGTTTTAGTCCCACTGAGT+TGG - tig0010244:65890-65909 Msa1348240:intron 45.0%
GATCTTTGTAAGGGACGACA+CGG + tig0010244:66043-66062 None:intergenic 45.0%
!! ATGGAAGGTGCTGTTCTTTC+TGG - tig0010244:66121-66140 Msa1348240:intron 45.0%
!! TGGAAGGTGCTGTTCTTTCT+GGG - tig0010244:66122-66141 Msa1348240:intron 45.0%
TTGTGCACAGGCTATTGTAC+AGG - tig0010244:66150-66169 Msa1348240:CDS 45.0%
GATGGAGACTGGTATGAGAC+GGG - tig0010244:61481-61500 Msa1348240:three_prime_UTR 50.0%
GTGGTGTCTTTCGCAGCTTA+AGG + tig0010244:61650-61669 None:intergenic 50.0%
TAAGCTGCGAAAGACACCAC+AGG - tig0010244:61650-61669 Msa1348240:three_prime_UTR 50.0%
ATTGGATGTGTGAGGCAGCA+AGG + tig0010244:61821-61840 None:intergenic 50.0%
TTGAAGCTTGGACAGAGCAC+AGG + tig0010244:61879-61898 None:intergenic 50.0%
CTTGTAGACCAGTTAGCCCT+TGG - tig0010244:61949-61968 Msa1348240:intron 50.0%
TACATGTGCCAAGGGCTAAC+TGG + tig0010244:61960-61979 None:intergenic 50.0%
! TTTGCTATGCCAAGCAAGCC+TGG - tig0010244:62212-62231 Msa1348240:intron 50.0%
! CTAAACTCTCCAGGCTTGCT+TGG + tig0010244:62224-62243 None:intergenic 50.0%
AACGGAGATGGAAGGACTTC+GGG + tig0010244:62260-62279 None:intergenic 50.0%
!! TGTGCCTATGTGATGGGCAT+TGG - tig0010244:62458-62477 Msa1348240:intron 50.0%
!! GTGCCTATGTGATGGGCATT+GGG - tig0010244:62459-62478 Msa1348240:intron 50.0%
GGACTTCTTCCAGCTATGCT+TGG - tig0010244:63082-63101 Msa1348240:intron 50.0%
CTTCTTCCAGCTATGCTTGG+TGG - tig0010244:63085-63104 Msa1348240:intron 50.0%
GCGTATGTTGAGGCTCAAGA+TGG - tig0010244:63112-63131 Msa1348240:intron 50.0%
GTTCAGGCGAAATCAACCCA+AGG + tig0010244:63778-63797 None:intergenic 50.0%
TGCTACCCTAGAGACCATTG+AGG + tig0010244:65484-65503 None:intergenic 50.0%
CGTGAAATCCATTCTTCGGC+TGG + tig0010244:65752-65771 None:intergenic 50.0%
GGACGACACGGTTCACAATT+TGG + tig0010244:66031-66050 None:intergenic 50.0%
! TTCTGGGAAGCTTTGTGCAC+AGG - tig0010244:66138-66157 Msa1348240:CDS 50.0%
! ATTCGGAGCTACTTGCTGCT+CGG - tig0010244:66567-66586 Msa1348240:intron 50.0%
CTGCCCAATGCCCATCACAT+AGG + tig0010244:62465-62484 None:intergenic 55.0%
! TCCAGCTATGCTTGGTGGAC+AGG - tig0010244:63090-63109 Msa1348240:intron 55.0%
! TGGTGGACAGGCGTATGTTG+AGG - tig0010244:63102-63121 Msa1348240:intron 55.0%
AGGGGGGTTTCCGTCCAAAA+AGG + tig0010244:64244-64263 None:intergenic 55.0%
! AAGATGGACTTCACCGCCCA+AGG + tig0010244:64304-64323 None:intergenic 55.0%
GCTTATGTGTCTGCAGCACC+AGG - tig0010244:64411-64430 Msa1348240:CDS 55.0%
GGAACCCCTTTCCAGTTCTC+AGG + tig0010244:64556-64575 None:intergenic 55.0%
! TTCGGAGCTACTTGCTGCTC+GGG - tig0010244:66568-66587 Msa1348240:intron 55.0%
GCCTGTCCACCAAGCATAGC+TGG + tig0010244:63094-63113 None:intergenic 60.0%
CGACAGGCCATGACCTTGAC+TGG + tig0010244:63238-63257 None:intergenic 60.0%
! TCGGAGCTACTTGCTGCTCG+GGG - tig0010244:66569-66588 Msa1348240:intron 60.0%
Chromosome Type Strat End Strand Name
tig0010244 gene 61457 66952 61457 ID=Msa1348240;Name=Msa1348240
tig0010244 mRNA 61457 66952 61457 ID=Msa1348240-mRNA-1;Parent=Msa1348240;Name=Msa1348240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|1|1|0.9|0.90|11|327|435
tig0010244 exon 61457 61843 61457 ID=Msa1348240-mRNA-1:exon:6326;Parent=Msa1348240-mRNA-1
tig0010244 exon 62238 62400 62238 ID=Msa1348240-mRNA-1:exon:6325;Parent=Msa1348240-mRNA-1
tig0010244 exon 62518 62705 62518 ID=Msa1348240-mRNA-1:exon:6324;Parent=Msa1348240-mRNA-1
tig0010244 exon 62997 63042 62997 ID=Msa1348240-mRNA-1:exon:6323;Parent=Msa1348240-mRNA-1
tig0010244 exon 63264 63311 63264 ID=Msa1348240-mRNA-1:exon:6322;Parent=Msa1348240-mRNA-1
tig0010244 exon 63777 63879 63777 ID=Msa1348240-mRNA-1:exon:6321;Parent=Msa1348240-mRNA-1
tig0010244 exon 63977 64190 63977 ID=Msa1348240-mRNA-1:exon:6320;Parent=Msa1348240-mRNA-1
tig0010244 exon 64388 64507 64388 ID=Msa1348240-mRNA-1:exon:6319;Parent=Msa1348240-mRNA-1
tig0010244 exon 65244 65392 65244 ID=Msa1348240-mRNA-1:exon:6318;Parent=Msa1348240-mRNA-1
tig0010244 exon 66125 66280 66125 ID=Msa1348240-mRNA-1:exon:6317;Parent=Msa1348240-mRNA-1
tig0010244 exon 66892 66952 66892 ID=Msa1348240-mRNA-1:exon:6316;Parent=Msa1348240-mRNA-1
tig0010244 CDS 66892 66952 66892 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 66125 66280 66125 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 65244 65392 65244 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 64388 64507 64388 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 63977 64190 63977 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 63777 63879 63777 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 63264 63311 63264 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 62997 63042 62997 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 62518 62705 62518 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 62238 62400 62238 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 CDS 61784 61843 61784 ID=Msa1348240-mRNA-1:cds;Parent=Msa1348240-mRNA-1
tig0010244 three_prime_UTR 61457 61783 61457 ID=Msa1348240-mRNA-1:three_prime_utr;Parent=Msa1348240-mRNA-1
Gene Sequence

>Msa1348240

AAGATTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACGGGCCTACATATATTCTTTGGGGCTTACCCTAATGTGCAGAACCTATTTGGAGAACTCGGTATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGAAGTCCTTCCATCTCCGTTAAATGGAATATGGGCAATCTTGAGGAATAATGAGATGCTGACCTGGCCAGAGAAAATCAAATTTGCAATTGGACTTCTTCCAGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTATTTCTGTCAAAGAATGGATGAGAAAACAGGGCATTCCTGAACGTGTAACTGATGAAGTGTTCATAGCAATGTCAAAGGCCCTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATTTTGATAGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGACGGAAACCCCCCTGAAAGACTTTGTATGCCAATTGTTGATCATATTAAGTCCTTGGGCGGTGAAGTCCATCTTAATTCACGCATTAAAAATATTGAGCTAAACGATGATAACACAGTGAAAAGCTTTTTACTAACTAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTCTGCAGCACCAGTGGATATTCTGAAGCTTCTTCTTCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAGAGATTGGAGAAATTAGTTGGAGTTCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACGTATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTAAGTGTATATGCCGACATGTCAGTAACTTGTAAGGAATACTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGAAGATATTATCGGTGCCACAATGTCTGAACTTGCCAAACTCTTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCAAAAATCATCAAGTACCACGTTGTTAAAACACCAAGGTCAGTTTACAAAACTGTTCCAAATTGTGAACCGTGTCGTCCCTTACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCTATGGAAGGTGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCGGAGCTACTTGCTGCTCGGGGCCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA

Protein sequence

>Msa1348240

KIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQAYVEAQDGISVKEWMRKQGIPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIKSLGGEVHLNSRIKNIELNDDNTVKSFLLTNGKVIEGDAYVSAAPVDILKLLLPENWKGVPYFQRLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIGATMSELAKLFPDEISADQSKAKIIKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLAARGQKRIAQASTV*