AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303130 MtrunA17_Chr4g0073171 93.962 265 16 0 1 265 1 265 0.0 520
Msa1303130 MtrunA17_Chr2g0300621 29.787 188 107 5 58 236 106 277 3.54e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303130 AT4G28030.1 64.407 236 84 0 27 262 31 266 2.79e-114 330
Msa1303130 AT4G28030.2 61.017 236 81 1 27 262 31 255 5.18e-103 300
Msa1303130 AT2G06025.1 31.016 187 106 4 58 236 95 266 1.91e-16 77.8
Msa1303130 AT2G06025.6 31.016 187 106 4 58 236 95 266 1.91e-16 77.8
Msa1303130 AT2G06025.4 31.016 187 106 4 58 236 95 266 1.91e-16 77.8

Find 61 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTAAGGAGCGTGTTTC+AGG 0.154494 8_3:+65977001 Msa1303130:CDS
CAAAGTCAGTTGCTCGTAAT+TGG 0.193463 8_3:+65977862 Msa1303130:CDS
CTTTCTACGATGATGAATTC+TGG 0.240043 8_3:+65976727 Msa1303130:CDS
TTCATGTACAATTTCTTTGC+TGG 0.253198 8_3:-65979747 None:intergenic
GTTAATGCAGAATTTGAAAA+TGG 0.275846 8_3:-65976603 None:intergenic
CTTTCAATCACCTAATTTGA+TGG 0.329354 8_3:+65979855 Msa1303130:exon
CACGACAACACCATCAAATT+AGG 0.334600 8_3:-65979865 None:intergenic
CGTAAGTGTCTGGACGAAAT+TGG 0.337880 8_3:-65976782 None:intergenic
AGGATTGGAATTGAGTTCTA+AGG 0.343231 8_3:-65976641 None:intergenic
GCTAGAGAGTTGCACAGAAA+TGG 0.349757 8_3:+65977813 Msa1303130:CDS
AAAGTCAGTTGCTCGTAATT+GGG 0.384466 8_3:+65977863 Msa1303130:CDS
AGTCTTCCTGATGAAATTGT+AGG 0.385815 8_3:+65977304 Msa1303130:CDS
TGATTTATGTTCTTCATGTA+AGG 0.404309 8_3:+65977099 Msa1303130:CDS
ACGTGAGTTTGAAGCACTTA+AGG 0.420143 8_3:+65976988 Msa1303130:CDS
AATGGAGAAGATGAATGAAT+TGG 0.432279 8_3:-65976585 None:intergenic
TTTCTACGATGATGAATTCT+GGG 0.435140 8_3:+65976728 Msa1303130:CDS
CTAGAGAGTTGCACAGAAAT+GGG 0.439454 8_3:+65977814 Msa1303130:CDS
TTTACTTATGAATGAAATGA+AGG 0.445885 8_3:-65979977 None:intergenic
ACTTGGACTCCGTAAGTGTC+TGG 0.451152 8_3:-65976792 None:intergenic
TTCATCCCTACAATTTCATC+AGG 0.451868 8_3:-65977310 None:intergenic
CCCGTGTGACTGTGTTAATA+TGG 0.468972 8_3:+65979896 Msa1303130:three_prime_UTR
CAATTTCGTCCAGACACTTA+CGG 0.474222 8_3:+65976783 Msa1303130:CDS
TTTGATGGTGTTGTCGTGTC+GGG 0.481584 8_3:+65979870 Msa1303130:three_prime_UTR
TCATAATTCATTTCTTACAA+TGG 0.489089 8_3:-65980016 None:intergenic
AGAAACCTTGCCTGCCATGC+AGG 0.496588 8_3:-65979798 None:intergenic
GGAGAAGATGAATGAATTGG+AGG 0.499020 8_3:-65976582 None:intergenic
ATTCTGCTAGTGGAGAAGAC+AGG 0.503889 8_3:+65977245 Msa1303130:CDS
AATGTTTATGGAAGAAGCAT+AGG 0.510788 8_3:-65976661 None:intergenic
GGAGAAGACAGGGTTGTAGT+TGG 0.511921 8_3:+65977256 Msa1303130:CDS
CTTTGCTGGTTCATTGTCAA+CGG 0.514602 8_3:-65979733 None:intergenic
CACTTAAGGAGCGTGTTTCA+GGG 0.519287 8_3:+65977002 Msa1303130:CDS
AAATATGTGCGGCGAGTACA+AGG 0.522225 8_3:-65980342 None:intergenic
CTAGTGGAGCTGATACTACA+AGG 0.523464 8_3:+65977766 Msa1303130:CDS
TTATGGAAGAAGCATAGGAT+TGG 0.526352 8_3:-65976656 None:intergenic
AGAAATTGTACATGAAGAGC+GGG 0.527874 8_3:+65979754 Msa1303130:CDS
GAGTGATGAACCTGCATGGC+AGG 0.529229 8_3:+65979788 Msa1303130:CDS
ATGAACCTGCATGGCAGGCA+AGG 0.531331 8_3:+65979793 Msa1303130:CDS
TTAGGATCATGCTAAGTACT+TGG 0.533106 8_3:+65976961 Msa1303130:intron
GTCTGGACGAAATTGGTTGA+AGG 0.533997 8_3:-65976775 None:intergenic
GCGAAGACTTCTGCTATGGA+TGG 0.537747 8_3:+65979830 Msa1303130:CDS
ATCCATAGCAGAAGTCTTCG+CGG 0.537820 8_3:-65979828 None:intergenic
AAGAAATTGTACATGAAGAG+CGG 0.548993 8_3:+65979753 Msa1303130:CDS
ATTTGATGGTGTTGTCGTGT+CGG 0.549344 8_3:+65979869 Msa1303130:exon
GACCGCGAAGACTTCTGCTA+TGG 0.554635 8_3:+65979826 Msa1303130:CDS
AGGCTAGATAAATGTGACAT+AGG 0.565192 8_3:-65977070 None:intergenic
AGAGTTGCACAGAAATGGGT+TGG 0.578468 8_3:+65977818 Msa1303130:CDS
AAGTCAGTTGCTCGTAATTG+GGG 0.584670 8_3:+65977864 Msa1303130:CDS
GTCTTCCTGATGAAATTGTA+GGG 0.587974 8_3:+65977305 Msa1303130:CDS
GAAATGAAGGAAAACTAATG+AGG 0.590130 8_3:-65979964 None:intergenic
AAGAACATAAATCATCATAG+AGG 0.592116 8_3:-65977090 None:intergenic
CGAAGACTTCTGCTATGGAT+GGG 0.593997 8_3:+65979831 Msa1303130:CDS
TTCTGCTAGTGGAGAAGACA+GGG 0.600017 8_3:+65977246 Msa1303130:CDS
GTTCATTGTCAACGGCAACA+TGG 0.600217 8_3:-65979725 None:intergenic
GCCATATTAACACAGTCACA+CGG 0.624585 8_3:-65979897 None:intergenic
GAAGGAACGAACACGAAGAG+AGG 0.628307 8_3:-65976757 None:intergenic
CCATATTAACACAGTCACAC+GGG 0.629542 8_3:-65979896 None:intergenic
TTCAGCGATTGTGATCAAAG+AGG 0.684752 8_3:-65976703 None:intergenic
GGAAAACTAATGAGGCAACG+TGG 0.710061 8_3:-65979956 None:intergenic
TAGTGGAGCTGATACTACAA+GGG 0.712956 8_3:+65977767 Msa1303130:CDS
AATTGTAGGGATGAAGCCAG+AGG 0.725736 8_3:+65977318 Msa1303130:CDS
ATGAGAGTGATGAACCTGCA+TGG 0.752863 8_3:+65979784 Msa1303130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAAGAAAAAAAAA+TGG - chr8_3:65976831-65976850 None:intergenic 10.0%
!! TGTAATTTATATTTGTTTAT+CGG + chr8_3:65977163-65977182 Msa1303130:intron 10.0%
!! TTATGAATATTGAAATTATT+TGG - chr8_3:65978792-65978811 None:intergenic 10.0%
!! AATATTCATAACTATTATAT+TGG + chr8_3:65978801-65978820 Msa1303130:intron 10.0%
!!! TCTTTGTTTATGATTTTATT+TGG - chr8_3:65976480-65976499 None:intergenic 15.0%
!!! ATTAGCTATTTTTATAACAA+AGG + chr8_3:65977440-65977459 Msa1303130:intron 15.0%
!! TAAAACATTATACAATTTGA+TGG - chr8_3:65977738-65977757 None:intergenic 15.0%
!!! AATATTCAGAACTTTTATAT+TGG + chr8_3:65978507-65978526 Msa1303130:intron 15.0%
!!! TTTTGTAAAAATAATCATCA+CGG - chr8_3:65980059-65980078 None:intergenic 15.0%
!!! TTTCCTTGATTTTAATTCAA+TGG + chr8_3:65977130-65977149 Msa1303130:intron 20.0%
!! TTTCCATTGAATTAAAATCA+AGG - chr8_3:65977136-65977155 None:intergenic 20.0%
!! TGATTAAATTGACCAAAATT+AGG - chr8_3:65978402-65978421 None:intergenic 20.0%
!! TTGGTCAATTTAATCATTAT+TGG + chr8_3:65978406-65978425 Msa1303130:intron 20.0%
!!! CATGCAATATTTTGATTAAT+AGG - chr8_3:65978702-65978721 None:intergenic 20.0%
!!! TTAGTTCTTTTGTAAATAGT+AGG + chr8_3:65978959-65978978 Msa1303130:intron 20.0%
!!! TAGTTCTTTTGTAAATAGTA+GGG + chr8_3:65978960-65978979 Msa1303130:intron 20.0%
!! ATGCTATCTTAAAATATAAC+TGG - chr8_3:65979060-65979079 None:intergenic 20.0%
!! AAAGAAAATCTAATCAACTA+GGG - chr8_3:65979424-65979443 None:intergenic 20.0%
!! AAAAGAAAATCTAATCAACT+AGG - chr8_3:65979425-65979444 None:intergenic 20.0%
!!! AATTGTTCATATATTTGTTG+CGG + chr8_3:65979527-65979546 Msa1303130:intron 20.0%
!! TTTACTTATGAATGAAATGA+AGG - chr8_3:65979980-65979999 None:intergenic 20.0%
!! TCATAATTCATTTCTTACAA+TGG - chr8_3:65980019-65980038 None:intergenic 20.0%
!! TTTGTAAAAATAATCATCAC+GGG - chr8_3:65980058-65980077 None:intergenic 20.0%
!! AAGATGATGTATCATATATA+CGG + chr8_3:65980132-65980151 Msa1303130:intron 20.0%
! CTATCAACACACAAAAAATA+AGG - chr8_3:65976452-65976471 None:intergenic 25.0%
! GTTAATGCAGAATTTGAAAA+TGG - chr8_3:65976606-65976625 None:intergenic 25.0%
! TTTGGATTGTGATAAAAAGA+TGG + chr8_3:65976914-65976933 Msa1303130:intron 25.0%
! AAGAACATAAATCATCATAG+AGG - chr8_3:65977093-65977112 None:intergenic 25.0%
! TGATTTATGTTCTTCATGTA+AGG + chr8_3:65977099-65977118 Msa1303130:CDS 25.0%
! TATATTTGTTTATCGGTCTT+TGG + chr8_3:65977170-65977189 Msa1303130:intron 25.0%
!! ATTTTATAGTATTCTGCTAG+TGG + chr8_3:65977235-65977254 Msa1303130:intron 25.0%
! GAATGTATAAAAAATACCTC+TGG - chr8_3:65977337-65977356 None:intergenic 25.0%
!! GAAAATTGATAACTCTTCTA+TGG + chr8_3:65977688-65977707 Msa1303130:intron 25.0%
! AACATTATACAATTTGATGG+AGG - chr8_3:65977735-65977754 None:intergenic 25.0%
!! TTGTATAATGTTTTACTGTC+AGG + chr8_3:65977743-65977762 Msa1303130:intron 25.0%
! TGATAGAATCTAATTGGTAA+TGG - chr8_3:65977983-65978002 None:intergenic 25.0%
! ATTACCAATTAGATTCTATC+AGG + chr8_3:65977982-65978001 Msa1303130:intron 25.0%
! TTACCAATTAGATTCTATCA+GGG + chr8_3:65977983-65978002 Msa1303130:intron 25.0%
!! TAAGTACCAAATCCTTTTAA+AGG - chr8_3:65978042-65978061 None:intergenic 25.0%
! TTGAACTTGATTAGATATCA+GGG + chr8_3:65978066-65978085 Msa1303130:intron 25.0%
! AATACAAATGGTTAGGATTA+AGG - chr8_3:65978102-65978121 None:intergenic 25.0%
!!! AGACTTTAATTGTTTTGAGT+AGG + chr8_3:65978338-65978357 Msa1303130:intron 25.0%
!!! GACTTTAATTGTTTTGAGTA+GGG + chr8_3:65978339-65978358 Msa1303130:intron 25.0%
!! AGACTTTCATTGTTTTCATT+AGG + chr8_3:65978627-65978646 Msa1303130:intron 25.0%
! ATCTACAGTTCATGAAAAAA+TGG + chr8_3:65979100-65979119 Msa1303130:intron 25.0%
! AACCAAATTTCATATGATCT+TGG + chr8_3:65979168-65979187 Msa1303130:intron 25.0%
! TGTTCCAAATTGATAAACAA+TGG + chr8_3:65979207-65979226 Msa1303130:intron 25.0%
!!! ATTTTGAAATCTGTTGACAA+TGG - chr8_3:65979244-65979263 None:intergenic 25.0%
!! AATTTAGTTCAATACAGTTC+CGG - chr8_3:65979371-65979390 None:intergenic 25.0%
! AAGAAAATCTAATCAACTAG+GGG - chr8_3:65979423-65979442 None:intergenic 25.0%
! TATTCATGAGTATATGAACT+AGG + chr8_3:65979593-65979612 Msa1303130:intron 25.0%
! TTCTACATGACAATGAATAT+CGG + chr8_3:65979630-65979649 Msa1303130:intron 25.0%
! ACATTTCTTAAACCAAAAAG+TGG + chr8_3:65979653-65979672 Msa1303130:intron 25.0%
AATGGAGAAGATGAATGAAT+TGG - chr8_3:65976588-65976607 None:intergenic 30.0%
! AATGTTTATGGAAGAAGCAT+AGG - chr8_3:65976664-65976683 None:intergenic 30.0%
!!! TTTTTGGGTGCAAATGTTTA+TGG - chr8_3:65976676-65976695 None:intergenic 30.0%
TTTCTACGATGATGAATTCT+GGG + chr8_3:65976728-65976747 Msa1303130:CDS 30.0%
TTTAGCTACTGAATTGCAAA+AGG + chr8_3:65976886-65976905 Msa1303130:intron 30.0%
TTAGCTACTGAATTGCAAAA+GGG + chr8_3:65976887-65976906 Msa1303130:intron 30.0%
AAGCACTTAAGAAACTGTTT+GGG - chr8_3:65977589-65977608 None:intergenic 30.0%
TAAGCACTTAAGAAACTGTT+TGG - chr8_3:65977590-65977609 None:intergenic 30.0%
ATCATCCAAAACAAGCTTAA+GGG - chr8_3:65977648-65977667 None:intergenic 30.0%
! GCATAAATAGACCATTTTCA+AGG - chr8_3:65977939-65977958 None:intergenic 30.0%
ATTCCCTGATAGAATCTAAT+TGG - chr8_3:65977989-65978008 None:intergenic 30.0%
TCAATTGTACTTGTAAGTGT+TGG + chr8_3:65978009-65978028 Msa1303130:intron 30.0%
GTTGAACTTGATTAGATATC+AGG + chr8_3:65978065-65978084 Msa1303130:intron 30.0%
! CCTAACCATTTGTATTGATA+CGG + chr8_3:65978106-65978125 Msa1303130:intron 30.0%
! CTAACCATTTGTATTGATAC+GGG + chr8_3:65978107-65978126 Msa1303130:intron 30.0%
ATTTCCCGTATCAATACAAA+TGG - chr8_3:65978114-65978133 None:intergenic 30.0%
CTTTATATATGATCCATGCT+AGG + chr8_3:65978260-65978279 Msa1303130:intron 30.0%
! TTTACCTACTCACCTAATTT+TGG + chr8_3:65978387-65978406 Msa1303130:intron 30.0%
!! TCTCTAAGACTTCATATCAT+GGG - chr8_3:65978436-65978455 None:intergenic 30.0%
!! ATCTCTAAGACTTCATATCA+TGG - chr8_3:65978437-65978456 None:intergenic 30.0%
! TCAATAAGACTCATTTTGCA+GGG - chr8_3:65978549-65978568 None:intergenic 30.0%
! ATCAATAAGACTCATTTTGC+AGG - chr8_3:65978550-65978569 None:intergenic 30.0%
! CTTATTGATGACAGTAGTAA+TGG + chr8_3:65978561-65978580 Msa1303130:intron 30.0%
TAGGGTAACTATCATAATCA+TGG + chr8_3:65978978-65978997 Msa1303130:intron 30.0%
GACCAAGATCATATGAAATT+TGG - chr8_3:65979173-65979192 None:intergenic 30.0%
CGTACCATTGTTTATCAATT+TGG - chr8_3:65979214-65979233 None:intergenic 30.0%
! GATCTAGGTTTGGTTATATT+TGG + chr8_3:65979306-65979325 Msa1303130:intron 30.0%
!! GTTTCCATAAACTTGTTATC+CGG + chr8_3:65979349-65979368 Msa1303130:intron 30.0%
!!! ATTTTAGAGTGCCTATAACT+TGG - chr8_3:65979565-65979584 None:intergenic 30.0%
TTCATGTACAATTTCTTTGC+TGG - chr8_3:65979750-65979769 None:intergenic 30.0%
AAGAAATTGTACATGAAGAG+CGG + chr8_3:65979753-65979772 Msa1303130:CDS 30.0%
CTTTCAATCACCTAATTTGA+TGG + chr8_3:65979855-65979874 Msa1303130:exon 30.0%
GAAATGAAGGAAAACTAATG+AGG - chr8_3:65979967-65979986 None:intergenic 30.0%
AGTACAAGGTCTGTATATAT+GGG - chr8_3:65980331-65980350 None:intergenic 30.0%
!!! TGTCATTTTTGTTGTGTTCG+TGG - chr8_3:65976538-65976557 None:intergenic 35.0%
AGGATTGGAATTGAGTTCTA+AGG - chr8_3:65976644-65976663 None:intergenic 35.0%
! TTATGGAAGAAGCATAGGAT+TGG - chr8_3:65976659-65976678 None:intergenic 35.0%
!!! CAAAGAGGTGTCGATTTTTT+GGG - chr8_3:65976691-65976710 None:intergenic 35.0%
!!! TCAAAGAGGTGTCGATTTTT+TGG - chr8_3:65976692-65976711 None:intergenic 35.0%
CTTTCTACGATGATGAATTC+TGG + chr8_3:65976727-65976746 Msa1303130:CDS 35.0%
ATGGAGTGAAAAAACTCACT+TGG - chr8_3:65976812-65976831 None:intergenic 35.0%
TTAGGATCATGCTAAGTACT+TGG + chr8_3:65976961-65976980 Msa1303130:intron 35.0%
AGGCTAGATAAATGTGACAT+AGG - chr8_3:65977073-65977092 None:intergenic 35.0%
AGTCTTCCTGATGAAATTGT+AGG + chr8_3:65977304-65977323 Msa1303130:CDS 35.0%
GTCTTCCTGATGAAATTGTA+GGG + chr8_3:65977305-65977324 Msa1303130:CDS 35.0%
TTCATCCCTACAATTTCATC+AGG - chr8_3:65977313-65977332 None:intergenic 35.0%
ATTTGTGTTTATGTCCTGTC+CGG + chr8_3:65977381-65977400 Msa1303130:intron 35.0%
! ATAAGCCTTTGTCGTTTATC+CGG - chr8_3:65977403-65977422 None:intergenic 35.0%
GTTGTTTACATAAGCTGTCA+TGG + chr8_3:65977499-65977518 Msa1303130:intron 35.0%
GATCATCCAAAACAAGCTTA+AGG - chr8_3:65977649-65977668 None:intergenic 35.0%
AAAGTCAGTTGCTCGTAATT+GGG + chr8_3:65977863-65977882 Msa1303130:CDS 35.0%
AGAAACAGTCAACTGCTAAA+TGG + chr8_3:65977889-65977908 Msa1303130:intron 35.0%
! TGTTTTCACTGCCTTGAAAA+TGG + chr8_3:65977925-65977944 Msa1303130:intron 35.0%
!! AATCTAATTGGTAATGGCAG+TGG - chr8_3:65977977-65977996 None:intergenic 35.0%
! CTTGTGCCTTTAAAAGGATT+TGG + chr8_3:65978033-65978052 Msa1303130:intron 35.0%
CCGTATCAATACAAATGGTT+AGG - chr8_3:65978109-65978128 None:intergenic 35.0%
GAAATGAACACGTGTAAAGA+AGG + chr8_3:65978129-65978148 Msa1303130:intron 35.0%
!!! GGTCCACATAAGTTTTGATT+TGG + chr8_3:65978150-65978169 Msa1303130:intron 35.0%
CCTCCAAATCAAAACTTATG+TGG - chr8_3:65978156-65978175 None:intergenic 35.0%
!!! CCACATAAGTTTTGATTTGG+AGG + chr8_3:65978153-65978172 Msa1303130:intron 35.0%
! TGATTTGGAGGATAGTTCAT+AGG + chr8_3:65978165-65978184 Msa1303130:intron 35.0%
TTGACCAAAATTAGGTGAGT+AGG - chr8_3:65978394-65978413 None:intergenic 35.0%
TGATTAATAGGACCCGAATT+TGG - chr8_3:65978690-65978709 None:intergenic 35.0%
TCAAAATATTGCATGTCCAG+TGG + chr8_3:65978707-65978726 Msa1303130:intron 35.0%
TAAGACTTCCTAATTACCAC+TGG - chr8_3:65978726-65978745 None:intergenic 35.0%
CGCAACATGAAAAACATAAC+TGG - chr8_3:65979015-65979034 None:intergenic 35.0%
ACAGGCAGTCAAATAAAAAC+AGG - chr8_3:65979130-65979149 None:intergenic 35.0%
GATCGACGTTACAAATTTAC+AGG - chr8_3:65979148-65979167 None:intergenic 35.0%
AGTTCCGGATAACAAGTTTA+TGG - chr8_3:65979356-65979375 None:intergenic 35.0%
! AAATTGTTTTCTCCGCTGTT+TGG - chr8_3:65979479-65979498 None:intergenic 35.0%
! AACAGCGGAGAAAACAATTT+TGG + chr8_3:65979479-65979498 Msa1303130:intron 35.0%
CCTATAACTTGGAATCTACA+TGG - chr8_3:65979554-65979573 None:intergenic 35.0%
CCATGTAGATTCCAAGTTAT+AGG + chr8_3:65979551-65979570 Msa1303130:intron 35.0%
ATTGTCATGTAGAAATCCCA+GGG - chr8_3:65979624-65979643 None:intergenic 35.0%
!! GAGTCAATGTAACCACTTTT+TGG - chr8_3:65979668-65979687 None:intergenic 35.0%
ACTCCATATTTGTGTCTTTC+AGG + chr8_3:65979684-65979703 Msa1303130:intron 35.0%
AGAAATTGTACATGAAGAGC+GGG + chr8_3:65979754-65979773 Msa1303130:CDS 35.0%
ACTTCAGTGACATAATGTCA+CGG + chr8_3:65980160-65980179 Msa1303130:intron 35.0%
! ACACAACACAAACTTTTGTG+TGG - chr8_3:65980202-65980221 None:intergenic 35.0%
ACACAAAAGTTTGTGTTGTG+TGG + chr8_3:65980201-65980220 Msa1303130:intron 35.0%
TGTATGGGTGACATTAAATC+TGG + chr8_3:65980235-65980254 Msa1303130:intron 35.0%
GTATGGGTGACATTAAATCT+GGG + chr8_3:65980236-65980255 Msa1303130:intron 35.0%
GTACAAGGTCTGTATATATG+GGG - chr8_3:65980330-65980349 None:intergenic 35.0%
GAGTACAAGGTCTGTATATA+TGG - chr8_3:65980332-65980351 None:intergenic 35.0%
GGAGAAGATGAATGAATTGG+AGG - chr8_3:65976585-65976604 None:intergenic 40.0%
TTCAGCGATTGTGATCAAAG+AGG - chr8_3:65976706-65976725 None:intergenic 40.0%
CAATTTCGTCCAGACACTTA+CGG + chr8_3:65976783-65976802 Msa1303130:CDS 40.0%
! GAATTGCAAAAGGGTGTGTT+TGG + chr8_3:65976896-65976915 Msa1303130:intron 40.0%
CGTGTTTGTCAAGTTCTGTT+AGG + chr8_3:65976943-65976962 Msa1303130:intron 40.0%
! ACGTGAGTTTGAAGCACTTA+AGG + chr8_3:65976988-65977007 Msa1303130:CDS 40.0%
! AACAAGCTTAAGGGCATGTA+TGG - chr8_3:65977639-65977658 None:intergenic 40.0%
!! ACATGCCCTTAAGCTTGTTT+TGG + chr8_3:65977640-65977659 Msa1303130:intron 40.0%
! ATGTTTTACTGTCAGGCTAG+TGG + chr8_3:65977750-65977769 Msa1303130:intron 40.0%
TAGTGGAGCTGATACTACAA+GGG + chr8_3:65977767-65977786 Msa1303130:CDS 40.0%
CTAGAGAGTTGCACAGAAAT+GGG + chr8_3:65977814-65977833 Msa1303130:CDS 40.0%
CAAAGTCAGTTGCTCGTAAT+TGG + chr8_3:65977862-65977881 Msa1303130:CDS 40.0%
AAGTCAGTTGCTCGTAATTG+GGG + chr8_3:65977864-65977883 Msa1303130:CDS 40.0%
!! GTTGGTCTTGTGCCTTTAAA+AGG + chr8_3:65978027-65978046 Msa1303130:intron 40.0%
GAGGATAGTTCATAGGTTAG+AGG + chr8_3:65978172-65978191 Msa1303130:intron 40.0%
ATGATCCATGCTAGGAGTTA+AGG + chr8_3:65978268-65978287 Msa1303130:intron 40.0%
TGATCCATGCTAGGAGTTAA+GGG + chr8_3:65978269-65978288 Msa1303130:intron 40.0%
GATAGCCAACTTTGTCTAGT+CGG + chr8_3:65978312-65978331 Msa1303130:intron 40.0%
! ACTAGACGAAGTTGGTTACA+TGG - chr8_3:65978601-65978620 None:intergenic 40.0%
ATGTAACCAACTTCGTCTAG+TGG + chr8_3:65978600-65978619 Msa1303130:intron 40.0%
TGTAACCAACTTCGTCTAGT+GGG + chr8_3:65978601-65978620 Msa1303130:intron 40.0%
CTTTACCTGCTCACCAAATT+CGG + chr8_3:65978674-65978693 Msa1303130:intron 40.0%
TTTACCTGCTCACCAAATTC+GGG + chr8_3:65978675-65978694 Msa1303130:intron 40.0%
TTGCATGTCCAGTGGTAATT+AGG + chr8_3:65978715-65978734 Msa1303130:intron 40.0%
! TCAACGAGACTCGTTTTGTA+GGG - chr8_3:65978843-65978862 None:intergenic 40.0%
! TTTCTAGCAGACAAGTCTCT+TGG - chr8_3:65978893-65978912 None:intergenic 40.0%
AGCATGTCTTGATGTTTGTG+AGG + chr8_3:65979075-65979094 Msa1303130:intron 40.0%
GATCTTGGTCTCGAACATAA+TGG + chr8_3:65979183-65979202 Msa1303130:intron 40.0%
! GACTGGAGTTTTCTATCACA+AGG - chr8_3:65979273-65979292 None:intergenic 40.0%
! GTTATATTTGGCTCGCAGTA+GGG + chr8_3:65979318-65979337 Msa1303130:intron 40.0%
! TTATATTTGGCTCGCAGTAG+GGG + chr8_3:65979319-65979338 Msa1303130:intron 40.0%
!! TGTGTGATGGTAATGGTGTT+TGG - chr8_3:65979400-65979419 None:intergenic 40.0%
CATTGTCATGTAGAAATCCC+AGG - chr8_3:65979625-65979644 None:intergenic 40.0%
ACGCCTGAAAGACACAAATA+TGG - chr8_3:65979690-65979709 None:intergenic 40.0%
!! CTTTGCTGGTTCATTGTCAA+CGG - chr8_3:65979736-65979755 None:intergenic 40.0%
CACGACAACACCATCAAATT+AGG - chr8_3:65979868-65979887 None:intergenic 40.0%
!! ATTTGATGGTGTTGTCGTGT+CGG + chr8_3:65979869-65979888 Msa1303130:exon 40.0%
CCATATTAACACAGTCACAC+GGG - chr8_3:65979899-65979918 None:intergenic 40.0%
GCCATATTAACACAGTCACA+CGG - chr8_3:65979900-65979919 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + chr8_3:65980175-65980194 Msa1303130:intron 40.0%
GTCACGGTGACATTAAATCT+GGG + chr8_3:65980176-65980195 Msa1303130:intron 40.0%
ACACAACACACATCTTTGTG+TGG - chr8_3:65980262-65980281 None:intergenic 40.0%
ACACAAAGATGTGTGTTGTG+TGG + chr8_3:65980261-65980280 Msa1303130:intron 40.0%
GTCTGGACGAAATTGGTTGA+AGG - chr8_3:65976778-65976797 None:intergenic 45.0%
CGTAAGTGTCTGGACGAAAT+TGG - chr8_3:65976785-65976804 None:intergenic 45.0%
! CACTTAAGGAGCGTGTTTCA+GGG + chr8_3:65977002-65977021 Msa1303130:CDS 45.0%
GCGTGTTTCAGGGAAAAAGA+CGG + chr8_3:65977012-65977031 Msa1303130:CDS 45.0%
CGTGTTTCAGGGAAAAAGAC+GGG + chr8_3:65977013-65977032 Msa1303130:CDS 45.0%
ATTCTGCTAGTGGAGAAGAC+AGG + chr8_3:65977245-65977264 Msa1303130:CDS 45.0%
TTCTGCTAGTGGAGAAGACA+GGG + chr8_3:65977246-65977265 Msa1303130:CDS 45.0%
AATTGTAGGGATGAAGCCAG+AGG + chr8_3:65977318-65977337 Msa1303130:CDS 45.0%
AAGCTGTCATGGAGAGCTTA+TGG + chr8_3:65977510-65977529 Msa1303130:intron 45.0%
CTAGTGGAGCTGATACTACA+AGG + chr8_3:65977766-65977785 Msa1303130:CDS 45.0%
GCTAGAGAGTTGCACAGAAA+TGG + chr8_3:65977813-65977832 Msa1303130:CDS 45.0%
AGAGTTGCACAGAAATGGGT+TGG + chr8_3:65977818-65977837 Msa1303130:CDS 45.0%
AACACCCTTAACTCCTAGCA+TGG - chr8_3:65978276-65978295 None:intergenic 45.0%
CTTCTCCGACTAGACAAAGT+TGG - chr8_3:65978320-65978339 None:intergenic 45.0%
! CTTTTCCCACTAGACGAAGT+TGG - chr8_3:65978609-65978628 None:intergenic 45.0%
! GTCAACGAGACTCGTTTTGT+AGG - chr8_3:65978844-65978863 None:intergenic 45.0%
TAGCAGACAAGTCTCTTGGA+AGG - chr8_3:65978889-65978908 None:intergenic 45.0%
AGAAAACTCCAGTCCAGAAC+TGG + chr8_3:65979279-65979298 Msa1303130:intron 45.0%
! AACTGGCTTCGATCTAGGTT+TGG + chr8_3:65979296-65979315 Msa1303130:intron 45.0%
! GGTTATATTTGGCTCGCAGT+AGG + chr8_3:65979317-65979336 Msa1303130:intron 45.0%
! TATATTTGGCTCGCAGTAGG+GGG + chr8_3:65979320-65979339 Msa1303130:intron 45.0%
! AATCAACTAGGGGTGTGTGA+TGG - chr8_3:65979413-65979432 None:intergenic 45.0%
TGCCATGAAGAACCAAACAG+CGG + chr8_3:65979464-65979483 Msa1303130:intron 45.0%
ATATGAACTAGGCAAGACCC+TGG + chr8_3:65979604-65979623 Msa1303130:intron 45.0%
TATGAACTAGGCAAGACCCT+GGG + chr8_3:65979605-65979624 Msa1303130:intron 45.0%
GTTCATTGTCAACGGCAACA+TGG - chr8_3:65979728-65979747 None:intergenic 45.0%
ATGAGAGTGATGAACCTGCA+TGG + chr8_3:65979784-65979803 Msa1303130:CDS 45.0%
ATCCATAGCAGAAGTCTTCG+CGG - chr8_3:65979831-65979850 None:intergenic 45.0%
CGAAGACTTCTGCTATGGAT+GGG + chr8_3:65979831-65979850 Msa1303130:CDS 45.0%
!! TTTGATGGTGTTGTCGTGTC+GGG + chr8_3:65979870-65979889 Msa1303130:three_prime_UTR 45.0%
CCCGTGTGACTGTGTTAATA+TGG + chr8_3:65979896-65979915 Msa1303130:three_prime_UTR 45.0%
GGAAAACTAATGAGGCAACG+TGG - chr8_3:65979959-65979978 None:intergenic 45.0%
TGTGGCTCAGATGTGTTGTA+TGG + chr8_3:65980219-65980238 Msa1303130:intron 45.0%
GTGGCTCAGATGTGTTGTAT+GGG + chr8_3:65980220-65980239 Msa1303130:intron 45.0%
GTCACCGTGACATTACATCT+GGG - chr8_3:65980287-65980306 None:intergenic 45.0%
TGTCACCGTGACATTACATC+TGG - chr8_3:65980288-65980307 None:intergenic 45.0%
GTATATATGGGGTGGCACTT+TGG - chr8_3:65980319-65980338 None:intergenic 45.0%
CAAGGTCTGTATATATGGGG+TGG - chr8_3:65980327-65980346 None:intergenic 45.0%
AAATATGTGCGGCGAGTACA+AGG - chr8_3:65980345-65980364 None:intergenic 45.0%
GAAGGAACGAACACGAAGAG+AGG - chr8_3:65976760-65976779 None:intergenic 50.0%
ACTTGGACTCCGTAAGTGTC+TGG - chr8_3:65976795-65976814 None:intergenic 50.0%
! GCACTTAAGGAGCGTGTTTC+AGG + chr8_3:65977001-65977020 Msa1303130:CDS 50.0%
GGAGAAGACAGGGTTGTAGT+TGG + chr8_3:65977256-65977275 Msa1303130:CDS 50.0%
! CCTTTGTCGTTTATCCGGAC+AGG - chr8_3:65977398-65977417 None:intergenic 50.0%
CCTGTCCGGATAAACGACAA+AGG + chr8_3:65977395-65977414 Msa1303130:intron 50.0%
! AGTCTCTTGGAAGGCTTGGT+CGG - chr8_3:65978880-65978899 None:intergenic 50.0%
GACAAGTCTCTTGGAAGGCT+TGG - chr8_3:65978884-65978903 None:intergenic 50.0%
! TCCAGAACTGGCTTCGATCT+AGG + chr8_3:65979291-65979310 Msa1303130:intron 50.0%
ACCTAGATCGAAGCCAGTTC+TGG - chr8_3:65979295-65979314 None:intergenic 50.0%
! ATATTTGGCTCGCAGTAGGG+GGG + chr8_3:65979321-65979340 Msa1303130:intron 50.0%
! CTAGGGGTGTGTGATGGTAA+TGG - chr8_3:65979407-65979426 None:intergenic 50.0%
!! CTCCGCTGTTTGGTTCTTCA+TGG - chr8_3:65979469-65979488 None:intergenic 50.0%
GCGAAGACTTCTGCTATGGA+TGG + chr8_3:65979830-65979849 Msa1303130:CDS 50.0%
GTGGCCCAGATGTAATGTCA+CGG + chr8_3:65980280-65980299 Msa1303130:intron 50.0%
! AGGACCCGAATTTGGTGAGC+AGG - chr8_3:65978682-65978701 None:intergenic 55.0%
! GTCTCTTGGAAGGCTTGGTC+GGG - chr8_3:65978879-65978898 None:intergenic 55.0%
!! GATCGAAGCCAGTTCTGGAC+TGG - chr8_3:65979290-65979309 None:intergenic 55.0%
GAGTGATGAACCTGCATGGC+AGG + chr8_3:65979788-65979807 Msa1303130:CDS 55.0%
ATGAACCTGCATGGCAGGCA+AGG + chr8_3:65979793-65979812 Msa1303130:CDS 55.0%
AGAAACCTTGCCTGCCATGC+AGG - chr8_3:65979801-65979820 None:intergenic 55.0%
GACCGCGAAGACTTCTGCTA+TGG + chr8_3:65979826-65979845 Msa1303130:CDS 55.0%
! TTGGAAGGCTTGGTCGGGAG+AGG - chr8_3:65978874-65978893 None:intergenic 60.0%
GGCTCGCAGTAGGGGGGATT+CGG + chr8_3:65979327-65979346 Msa1303130:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 65976424 65980365 65976424 ID=Msa1303130;Name=Msa1303130
chr8_3 mRNA 65976424 65980365 65976424 ID=Msa1303130-mRNA-1;Parent=Msa1303130;Name=Msa1303130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=128|1|1|1|0.8|0.66|6|310|265
chr8_3 exon 65976424 65976812 65976424 ID=Msa1303130-mRNA-1:exon:20064;Parent=Msa1303130-mRNA-1
chr8_3 exon 65976965 65977120 65976965 ID=Msa1303130-mRNA-1:exon:20065;Parent=Msa1303130-mRNA-1
chr8_3 exon 65977244 65977339 65977244 ID=Msa1303130-mRNA-1:exon:20066;Parent=Msa1303130-mRNA-1
chr8_3 exon 65977765 65977885 65977765 ID=Msa1303130-mRNA-1:exon:20067;Parent=Msa1303130-mRNA-1
chr8_3 exon 65979706 65980148 65979706 ID=Msa1303130-mRNA-1:exon:20068;Parent=Msa1303130-mRNA-1
chr8_3 exon 65980335 65980365 65980335 ID=Msa1303130-mRNA-1:exon:20069;Parent=Msa1303130-mRNA-1
chr8_3 five_prime_UTR 65976424 65976551 65976424 ID=Msa1303130-mRNA-1:five_prime_utr;Parent=Msa1303130-mRNA-1
chr8_3 CDS 65976552 65976812 65976552 ID=Msa1303130-mRNA-1:cds;Parent=Msa1303130-mRNA-1
chr8_3 CDS 65976965 65977120 65976965 ID=Msa1303130-mRNA-1:cds;Parent=Msa1303130-mRNA-1
chr8_3 CDS 65977244 65977339 65977244 ID=Msa1303130-mRNA-1:cds;Parent=Msa1303130-mRNA-1
chr8_3 CDS 65977765 65977885 65977765 ID=Msa1303130-mRNA-1:cds;Parent=Msa1303130-mRNA-1
chr8_3 CDS 65979706 65979869 65979706 ID=Msa1303130-mRNA-1:cds;Parent=Msa1303130-mRNA-1
chr8_3 three_prime_UTR 65979870 65980148 65979870 ID=Msa1303130-mRNA-1:three_prime_utr;Parent=Msa1303130-mRNA-1
chr8_3 three_prime_UTR 65980335 65980365 65980335 ID=Msa1303130-mRNA-1:three_prime_utr;Parent=Msa1303130-mRNA-1
Gene Sequence

>Msa1303130

ATGACACTCATTTCTTCACTCTGTTCTTTTCCTCCAATTCATTCATCTTCTCCATTTTCAAATTCTGCATTAACATGTTCAACTTCTAACCTTAGAACTCAATTCCAATCCTATGCTTCTTCCATAAACATTTGCACCCAAAAAATCGACACCTCTTTGATCACAATCGCTGAATCTTTCTACGATGATGAATTCTGGGCTGCTTCCTCTCTTCGTGTTCGTTCCTTCAACCAATTTCGTCCAGACACTTACGGAGTCCAAGATCATGCTAAGTACTTGGCTGAACGTGAGTTTGAAGCACTTAAGGAGCGTGTTTCAGGGAAAAAGACGGGCTTTAGAAGAGTTTCTTGCATAAATGCTTCTCTTCCTATGTCACATTTATCTAGCCTCTATGATGATTTATGTTCTTCATGTAAGTATTCTGCTAGTGGAGAAGACAGGGTTGTAGTTGGTTCTCTTGATCTTAATCAGTGCTTGAGTCTTCCTGATGAAATTGTAGGGATGAAGCCAGAGGCTAGTGGAGCTGATACTACAAGGGCGTATCTTAGTAATGTATGTGTTGCTAGAGAGTTGCACAGAAATGGGTTGGCATATGAACTTCTTGAAAAGTCAAAGTCAGTTGCTCGTAATTGGGGCGTAACAGATTTGTACGTCCATGTTGCCGTTGACAATGAACCAGCAAAGAAATTGTACATGAAGAGCGGGTTTGTTTATGAGAGTGATGAACCTGCATGGCAGGCAAGGTTTCTTGATCGACCGCGAAGACTTCTGCTATGGATGGGTCTTTCAATCACCTAA

Protein sequence

>Msa1303130

MTLISSLCSFPPIHSSSPFSNSALTCSTSNLRTQFQSYASSINICTQKIDTSLITIAESFYDDEFWAASSLRVRSFNQFRPDTYGVQDHAKYLAEREFEALKERVSGKKTGFRRVSCINASLPMSHLSSLYDDLCSSCKYSASGEDRVVVGSLDLNQCLSLPDEIVGMKPEASGADTTRAYLSNVCVARELHRNGLAYELLEKSKSVARNWGVTDLYVHVAVDNEPAKKLYMKSGFVYESDEPAWQARFLDRPRRLLLWMGLSIT*