AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524570 MtrunA17_Chr3g0138501 90.236 297 24 3 1 296 1 293 6.00e-180 497
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524570 AT5G11450.2 64.516 248 81 3 53 296 71 315 3.10e-113 330
Msa0524570 AT5G11450.1 64.516 248 81 3 53 296 53 297 5.68e-113 328

Find 76 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATAAGGTTGTTAT+TGG 0.169527 3_4:-78013562 None:intergenic
ACAAAGATCCCTGGAGATTT+TGG 0.175536 3_4:+78017404 Msa0524570:CDS
ACTGAAACGGTTGTCTCTTT+AGG 0.194094 3_4:+78017572 Msa0524570:three_prime_UTR
CTGAAACGGTTGTCTCTTTA+GGG 0.239298 3_4:+78017573 Msa0524570:three_prime_UTR
GAAATACTTACCATTGAATT+AGG 0.251354 3_4:-78016338 None:intergenic
ACTCTTCAAAGAACATAATA+TGG 0.255715 3_4:-78017492 None:intergenic
TGTCTTGCAGTGGCTCTTGC+TGG 0.263989 3_4:+78013797 Msa0524570:intron
AGGAGCATTTGGTTTGGTTT+TGG 0.272796 3_4:-78013599 None:intergenic
TCTTATCCTTCAAGTTTATA+AGG 0.274761 3_4:-78015223 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 3_4:-78017562 None:intergenic
AAGAGGAATTTACCAGAAAA+AGG 0.297343 3_4:-78013723 None:intergenic
TTTCATCATCTTCTTCTAGA+AGG 0.299644 3_4:+78013649 Msa0524570:CDS
CGCGAAGTGGTGAAACTAAC+TGG 0.325804 3_4:+78013476 Msa0524570:five_prime_UTR
GTCATCATCATTCTATCAAA+AGG 0.356945 3_4:-78017602 None:intergenic
TATAGGTGGGGTGATGGAAT+TGG 0.358565 3_4:+78013449 Msa0524570:five_prime_UTR
AGATTGAAGGCGAACCTTAC+TGG 0.380241 3_4:+78016288 Msa0524570:intron
CCAATAACAACCTTATCTTC+AGG 0.404699 3_4:+78013562 Msa0524570:CDS
CTGAAGATAAGGTTGTTATT+GGG 0.405745 3_4:-78013561 None:intergenic
GGATTGTTGGAAGGAGCATT+TGG 0.408319 3_4:-78013610 None:intergenic
CTGAAGAATCAGGAATTTAC+CGG 0.413569 3_4:+78016442 Msa0524570:CDS
TGCAAACCTTATAAACTTGA+AGG 0.413975 3_4:+78015217 Msa0524570:CDS
AAGAATAAGAGCTGGATTGT+TGG 0.426768 3_4:-78013538 None:intergenic
ACTTCAACAAGACCCCAAAA+TGG 0.433609 3_4:+78013829 Msa0524570:CDS
ATTCATGTAGTAACCTTTGT+GGG 0.433909 3_4:+78017454 Msa0524570:three_prime_UTR
TGAAAGTGAGATAATGTTAT+AGG 0.440242 3_4:+78013432 None:intergenic
ATTGTCTCCTCACAGATTGA+AGG 0.445126 3_4:+78016275 Msa0524570:intron
GTTGGAAGGAGCATTTGGTT+TGG 0.448463 3_4:-78013605 None:intergenic
GTTGTACAGTCTGAAGAATC+AGG 0.450686 3_4:+78016432 Msa0524570:intron
TATTCATGTAGTAACCTTTG+TGG 0.456061 3_4:+78017453 Msa0524570:three_prime_UTR
GCAGCCGATGAATATCGTTC+TGG 0.459979 3_4:-78014745 None:intergenic
AATCTCCAGGGATCTTTGTA+TGG 0.474697 3_4:-78017400 None:intergenic
TAATGTTATAGGTGGGGTGA+TGG 0.475652 3_4:+78013443 Msa0524570:five_prime_UTR
ACTTGAAGGATAAGAGCAAA+TGG 0.476008 3_4:+78015231 Msa0524570:CDS
AAGAGGGTAAAGATAAGAAT+AGG 0.477402 3_4:-78013876 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 3_4:+78017559 Msa0524570:three_prime_UTR
GGATTACCCTCCTGAAGATA+AGG 0.481706 3_4:-78013572 None:intergenic
TCATCATCATTCTATCAAAA+GGG 0.486686 3_4:-78017601 None:intergenic
TCGTAAATCACCTAATTCAA+TGG 0.488014 3_4:+78016328 Msa0524570:CDS
TTTAGCTGACAAATCTTCAC+TGG 0.488647 3_4:+78015280 Msa0524570:CDS
TTCATCATCTTCTTCTAGAA+GGG 0.496757 3_4:+78013650 Msa0524570:CDS
TTTATAAGGTTTGCACTTGG+AGG 0.505460 3_4:-78015209 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 3_4:+78017395 Msa0524570:CDS
TGCATCGAGAACTGAACTCT+CGG 0.532100 3_4:-78016011 None:intergenic
TTATAAGGTTTGCACTTGGA+GGG 0.533271 3_4:-78015208 None:intergenic
TTATTGGGAAGAATAAGAGC+TGG 0.537380 3_4:-78013546 None:intergenic
AATTAGGTGATTTACGAATG+AGG 0.544454 3_4:-78016322 None:intergenic
TAAATGGCTGCATATGAATG+AGG 0.562818 3_4:+78017709 Msa0524570:three_prime_UTR
AAAGAGACAACCGTTTCAGT+AGG 0.566133 3_4:-78017569 None:intergenic
TTTATCATCGGATTGTTGGA+AGG 0.566618 3_4:-78013619 None:intergenic
AAGAGACAACCGTTTCAGTA+GGG 0.567852 3_4:-78017568 None:intergenic
AGGTATTCATAATACCAGTA+AGG 0.568849 3_4:-78016302 None:intergenic
TCTTAAATACCTAGTCATAG+TGG 0.573279 3_4:+78017635 Msa0524570:intron
AAGTGAGATAATGTTATAGG+TGG 0.580126 3_4:+78013435 None:intergenic
ATGGACTGCAAAAGATGTTG+TGG 0.582234 3_4:+78015250 Msa0524570:CDS
CAATCTCATCATTTCCGTCA+CGG 0.585889 3_4:+78015090 Msa0524570:CDS
ACTGAGGGTCGAAGCGCTGA+TGG 0.592389 3_4:-78016793 None:intergenic
ATAAGAGCTGGATTGTTGGA+AGG 0.595730 3_4:-78013534 None:intergenic
AAACTAACTGGAGCTAGCAA+TGG 0.598377 3_4:+78013488 Msa0524570:exon
AAGTTTATAAGGTTTGCACT+TGG 0.598414 3_4:-78015212 None:intergenic
AGTGAGATAATGTTATAGGT+GGG 0.602141 3_4:+78013436 None:intergenic
CTGTTGAAGCAACATAATGC+CGG 0.605398 3_4:-78016461 None:intergenic
GTGAGATAATGTTATAGGTG+GGG 0.605698 3_4:+78013437 None:intergenic
CTCCAGGGATCTTTGTATGG+AGG 0.613390 3_4:-78017397 None:intergenic
AAAGCCAGAACGATATTCAT+CGG 0.615878 3_4:+78014741 Msa0524570:CDS
ATAACAACCTTATCTTCAGG+AGG 0.618318 3_4:+78013565 Msa0524570:CDS
CTCGGCTGAGCGCTGAACTG+AGG 0.632575 3_4:-78015993 None:intergenic
AATTCCTTGCAGCTAATGCG+CGG 0.633327 3_4:+78015032 Msa0524570:intron
GCTTCAACAGCAGAAAGAGA+TGG 0.651152 3_4:+78016474 Msa0524570:CDS
TAATTAGAACCACTATGACT+AGG 0.657996 3_4:-78017644 None:intergenic
TAACAACCTTATCTTCAGGA+GGG 0.664496 3_4:+78013566 Msa0524570:CDS
ACATGAATTTCACCCCACAA+AGG 0.669412 3_4:-78017467 None:intergenic
AGATTGAGGAAATACCGTGA+CGG 0.681795 3_4:-78015104 None:intergenic
TTCATGTAGTAACCTTTGTG+GGG 0.682116 3_4:+78017455 Msa0524570:three_prime_UTR
TTGTTAGAGATAGTGAAGTG+AGG 0.696186 3_4:-78013692 None:intergenic
CTTCGACCCTCAGTCCACAG+TGG 0.711960 3_4:+78016802 Msa0524570:CDS
TGGAATTGGAAATCGCGAAG+TGG 0.727811 3_4:+78013463 Msa0524570:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAAATAAAATAAAA+TGG - chr3_4:78013957-78013976 None:intergenic 10.0%
!! AACTATAAATAAAGAAATAA+GGG - chr3_4:78014425-78014444 None:intergenic 10.0%
!! TATTTATAGTTGTTATAAAT+TGG + chr3_4:78014434-78014453 Msa0524570:intron 10.0%
!! AATATCAGAAATAAATTTAA+AGG - chr3_4:78015951-78015970 None:intergenic 10.0%
!! CAACTATAAATAAAGAAATA+AGG - chr3_4:78014426-78014445 None:intergenic 15.0%
!!! TAGTTTAATTATAGTTTTGT+TGG - chr3_4:78014625-78014644 None:intergenic 15.0%
!! AAAACTATAATTAAACTAGT+TGG + chr3_4:78014627-78014646 Msa0524570:intron 15.0%
!! AAAATGATCATAAAAAATAC+TGG + chr3_4:78015496-78015515 Msa0524570:intron 15.0%
!!! AAAATATTGATTTAACATGT+TGG - chr3_4:78015557-78015576 None:intergenic 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG - chr3_4:78015737-78015756 None:intergenic 15.0%
!!! TGTTACAAATTTACATATTT+TGG + chr3_4:78016227-78016246 Msa0524570:intron 15.0%
!! AAAAATTATTCATCTATCAA+TGG + chr3_4:78017079-78017098 Msa0524570:intron 15.0%
!! AAAATTATTCATCTATCAAT+GGG + chr3_4:78017080-78017099 Msa0524570:intron 15.0%
!! AAAAAATTATTAGAATGTCA+AGG - chr3_4:78017305-78017324 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG + chr3_4:78017313-78017332 Msa0524570:intron 15.0%
!! TGAAAAACTTGAAATTTAAA+TGG + chr3_4:78017693-78017712 Msa0524570:three_prime_UTR 15.0%
!!! TGAAAAATCTCTTTTATCAT+CGG - chr3_4:78013634-78013653 None:intergenic 20.0%
!!! TTGAAGACAAAATTTTTAGA+GGG - chr3_4:78013908-78013927 None:intergenic 20.0%
!!! TTTGAAGACAAAATTTTTAG+AGG - chr3_4:78013909-78013928 None:intergenic 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG + chr3_4:78013909-78013928 Msa0524570:CDS 20.0%
!! AGATTTAAAGATTAATGAGT+TGG + chr3_4:78014182-78014201 Msa0524570:intron 20.0%
!! TGGAAACAAATTGAAAAAAA+AGG + chr3_4:78014357-78014376 Msa0524570:intron 20.0%
!! ATGTTATTGATATTGTTGAA+TGG + chr3_4:78014498-78014517 Msa0524570:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG + chr3_4:78014499-78014518 Msa0524570:intron 20.0%
!! ATTTACTCTTGCTAATAATT+TGG - chr3_4:78014569-78014588 None:intergenic 20.0%
!! AACTCTTTCCATATAATTAA+AGG + chr3_4:78014707-78014726 Msa0524570:intron 20.0%
!! ACTCTTTCCATATAATTAAA+GGG + chr3_4:78014708-78014727 Msa0524570:intron 20.0%
!!! TATAAGCTCTTTTAAAAGAT+AGG + chr3_4:78014895-78014914 Msa0524570:intron 20.0%
!! ACTAGATATTATCTCTAATT+GGG + chr3_4:78015445-78015464 Msa0524570:intron 20.0%
!!! TAGAAGTTTTGATGTAATAT+TGG + chr3_4:78015684-78015703 Msa0524570:intron 20.0%
!! AGATCCATAGAAAAAAAATA+AGG + chr3_4:78016673-78016692 Msa0524570:intron 20.0%
!!! TTAGCCTTATTTTTTTTCTA+TGG - chr3_4:78016680-78016699 None:intergenic 20.0%
!!! TCTTTTTTGGAAAAGAATAA+AGG + chr3_4:78017055-78017074 Msa0524570:intron 20.0%
!!! ATGATTTGAAATAGTATGTT+AGG - chr3_4:78017202-78017221 None:intergenic 20.0%
!!! ATTCGTTAATTTTCAAATGA+AGG - chr3_4:78017255-78017274 None:intergenic 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG + chr3_4:78017312-78017331 Msa0524570:intron 20.0%
!!! AATAATTTTTTATGCAGATG+GGG + chr3_4:78017314-78017333 Msa0524570:intron 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG + chr3_4:78017506-78017525 Msa0524570:three_prime_UTR 20.0%
! CGAAAATAAAATAAAATGGC+AGG - chr3_4:78013953-78013972 None:intergenic 25.0%
!! TTTAAAGATTAATGAGTTGG+TGG + chr3_4:78014185-78014204 Msa0524570:intron 25.0%
!! AATGAACTTCTTTTCTCAAT+TGG - chr3_4:78014474-78014493 None:intergenic 25.0%
! ATAATTTGGAGATGTGTTAA+TGG - chr3_4:78014555-78014574 None:intergenic 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG + chr3_4:78014679-78014698 Msa0524570:intron 25.0%
! GATTCTACCCTTTAATTATA+TGG - chr3_4:78014718-78014737 None:intergenic 25.0%
!!! AGCAATTTTAATCCAGAAAA+AGG - chr3_4:78015007-78015026 None:intergenic 25.0%
!!! GAAAATGATAAAGCATTGAA+TGG - chr3_4:78015158-78015177 None:intergenic 25.0%
!! TTTTCCCATTAAATTCAGAT+AGG + chr3_4:78015185-78015204 Msa0524570:intron 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG - chr3_4:78015226-78015245 None:intergenic 25.0%
! GATAATATCTAGTGAGTAAT+GGG - chr3_4:78015438-78015457 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG - chr3_4:78015439-78015458 None:intergenic 25.0%
! CACTAGATATTATCTCTAAT+TGG + chr3_4:78015444-78015463 Msa0524570:intron 25.0%
!! ATCATTTTATATCGCTTATC+TGG - chr3_4:78015484-78015503 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG + chr3_4:78015699-78015718 Msa0524570:intron 25.0%
! ATATTGGATACAAGAATGAA+GGG + chr3_4:78015700-78015719 Msa0524570:intron 25.0%
! CATTAGAAACATATTGTTCT+CGG - chr3_4:78015807-78015826 None:intergenic 25.0%
!! ACAAACAAATCACATGTTTT+GGG - chr3_4:78016174-78016193 None:intergenic 25.0%
!! AACAAACAAATCACATGTTT+TGG - chr3_4:78016175-78016194 None:intergenic 25.0%
! GAAATACTTACCATTGAATT+AGG - chr3_4:78016341-78016360 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG + chr3_4:78016365-78016384 Msa0524570:intron 25.0%
!!! TTCTTTTTTTAAGGAAGTTG+TGG + chr3_4:78016374-78016393 Msa0524570:intron 25.0%
! AAAGTAGGAATAATTTGAGA+GGG - chr3_4:78016504-78016523 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG - chr3_4:78016505-78016524 None:intergenic 25.0%
! TAATAATTGTGCTTGATTTC+AGG + chr3_4:78016759-78016778 Msa0524570:intron 25.0%
! GTTCTCAGTAAGAATTTATA+TGG - chr3_4:78017025-78017044 None:intergenic 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG - chr3_4:78017228-78017247 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG - chr3_4:78017229-78017248 None:intergenic 25.0%
! ACTCTTCAAAGAACATAATA+TGG - chr3_4:78017495-78017514 None:intergenic 25.0%
! TCATCATCATTCTATCAAAA+GGG - chr3_4:78017604-78017623 None:intergenic 25.0%
! CTGAAGATAAGGTTGTTATT+GGG - chr3_4:78013564-78013583 None:intergenic 30.0%
!!! ATTTGGTTTGGTTTTGGTTA+AGG - chr3_4:78013596-78013615 None:intergenic 30.0%
TTTCATCATCTTCTTCTAGA+AGG + chr3_4:78013649-78013668 Msa0524570:CDS 30.0%
! TTCATCATCTTCTTCTAGAA+GGG + chr3_4:78013650-78013669 Msa0524570:CDS 30.0%
AAGAGGAATTTACCAGAAAA+AGG - chr3_4:78013726-78013745 None:intergenic 30.0%
!! TCCAAAAAAGAAGCCATTTT+GGG - chr3_4:78013845-78013864 None:intergenic 30.0%
! ATCCAAAAAAGAAGCCATTT+TGG - chr3_4:78013846-78013865 None:intergenic 30.0%
AAGAGGGTAAAGATAAGAAT+AGG - chr3_4:78013879-78013898 None:intergenic 30.0%
TAAAATAAAATGGCAGGCAA+AGG - chr3_4:78013947-78013966 None:intergenic 30.0%
! GTTTCTGTTATAGCTTTTCT+AGG - chr3_4:78014041-78014060 None:intergenic 30.0%
! AATTTGTTTCCAGTTTAAGC+GGG - chr3_4:78014349-78014368 None:intergenic 30.0%
! CAATTTGTTTCCAGTTTAAG+CGG - chr3_4:78014350-78014369 None:intergenic 30.0%
! TGTGTTAATGGCTAGTTATA+TGG - chr3_4:78014543-78014562 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG + chr3_4:78014576-78014595 Msa0524570:intron 30.0%
AACAATCAATGAAAACTTGC+AGG - chr3_4:78014677-78014696 None:intergenic 30.0%
CAAAAAAACTTACGAGAAAG+TGG - chr3_4:78014772-78014791 None:intergenic 30.0%
!!! TTTTTTTGTCTTCCTTTGCA+AGG + chr3_4:78014784-78014803 Msa0524570:intron 30.0%
AAGTTTATAAGGTTTGCACT+TGG - chr3_4:78015215-78015234 None:intergenic 30.0%
TGCAAACCTTATAAACTTGA+AGG + chr3_4:78015217-78015236 Msa0524570:CDS 30.0%
GTTACTCATGCTATTCTTAT+TGG + chr3_4:78015309-78015328 Msa0524570:intron 30.0%
AACTATAGTTTAACCATGTG+GGG - chr3_4:78015633-78015652 None:intergenic 30.0%
CAACTATAGTTTAACCATGT+GGG - chr3_4:78015634-78015653 None:intergenic 30.0%
TCAACTATAGTTTAACCATG+TGG - chr3_4:78015635-78015654 None:intergenic 30.0%
! CGAGAACAATATGTTTCTAA+TGG + chr3_4:78015805-78015824 Msa0524570:intron 30.0%
CCTAAAGAATACAACTTCAA+AGG - chr3_4:78015866-78015885 None:intergenic 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG + chr3_4:78015863-78015882 Msa0524570:intron 30.0%
AGGTATTCATAATACCAGTA+AGG - chr3_4:78016305-78016324 None:intergenic 30.0%
AATTAGGTGATTTACGAATG+AGG - chr3_4:78016325-78016344 None:intergenic 30.0%
TCGTAAATCACCTAATTCAA+TGG + chr3_4:78016328-78016347 Msa0524570:CDS 30.0%
AAAAAAGAAAATGCACCAAG+AGG - chr3_4:78016363-78016382 None:intergenic 30.0%
! GGTGTATGTGATTTTTACTT+TGG + chr3_4:78016395-78016414 Msa0524570:intron 30.0%
AATTCACATTAGAATGCACA+AGG - chr3_4:78016555-78016574 None:intergenic 30.0%
TTTCAAGCAATATTATGCAG+AGG - chr3_4:78016581-78016600 None:intergenic 30.0%
ATACTTGTTCCAGAGATAAA+AGG + chr3_4:78016648-78016667 Msa0524570:intron 30.0%
!! AAGTTGACTTGACAATAGTT+TGG + chr3_4:78016995-78017014 Msa0524570:intron 30.0%
TTCAGTAGAAAATGAAGACT+TGG - chr3_4:78017164-78017183 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG + chr3_4:78017225-78017244 Msa0524570:intron 30.0%
! ATTTTTCACCAAAATCTCCA+GGG - chr3_4:78017415-78017434 None:intergenic 30.0%
TATTCATGTAGTAACCTTTG+TGG + chr3_4:78017453-78017472 Msa0524570:three_prime_UTR 30.0%
ATTCATGTAGTAACCTTTGT+GGG + chr3_4:78017454-78017473 Msa0524570:three_prime_UTR 30.0%
GTCATCATCATTCTATCAAA+AGG - chr3_4:78017605-78017624 None:intergenic 30.0%
TCTTAAATACCTAGTCATAG+TGG + chr3_4:78017635-78017654 Msa0524570:intron 30.0%
TAATTAGAACCACTATGACT+AGG - chr3_4:78017647-78017666 None:intergenic 30.0%
!! CAATGGTTTTACACTCTCTA+TGG + chr3_4:78013505-78013524 Msa0524570:exon 35.0%
AAGAATAAGAGCTGGATTGT+TGG - chr3_4:78013541-78013560 None:intergenic 35.0%
TTATTGGGAAGAATAAGAGC+TGG - chr3_4:78013549-78013568 None:intergenic 35.0%
CCTGAAGATAAGGTTGTTAT+TGG - chr3_4:78013565-78013584 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG + chr3_4:78013562-78013581 Msa0524570:CDS 35.0%
ATAACAACCTTATCTTCAGG+AGG + chr3_4:78013565-78013584 Msa0524570:CDS 35.0%
TAACAACCTTATCTTCAGGA+GGG + chr3_4:78013566-78013585 Msa0524570:CDS 35.0%
TTTATCATCGGATTGTTGGA+AGG - chr3_4:78013622-78013641 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG - chr3_4:78013626-78013645 None:intergenic 35.0%
TTGTTAGAGATAGTGAAGTG+AGG - chr3_4:78013695-78013714 None:intergenic 35.0%
AGCAGCAAATGAAGAAAAAG+AGG - chr3_4:78013743-78013762 None:intergenic 35.0%
!! CCAAAAAAGAAGCCATTTTG+GGG - chr3_4:78013844-78013863 None:intergenic 35.0%
TCTTCTCTCTACATGAAAGT+GGG - chr3_4:78014080-78014099 None:intergenic 35.0%
TTTCATGTAGAGAGAAGAGT+AGG + chr3_4:78014082-78014101 Msa0524570:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG + chr3_4:78014119-78014138 Msa0524570:intron 35.0%
! AAGTCTTATCCCATTAAGTG+TGG - chr3_4:78014254-78014273 None:intergenic 35.0%
AAAGCCAGAACGATATTCAT+CGG + chr3_4:78014741-78014760 Msa0524570:CDS 35.0%
! GCTTTGTAGTTTCCTTTTTC+TGG + chr3_4:78014992-78015011 Msa0524570:intron 35.0%
! ATGCAACAAGTTTGAGATTG+AGG - chr3_4:78015121-78015140 None:intergenic 35.0%
AGGGCCTATCTGAATTTAAT+GGG - chr3_4:78015192-78015211 None:intergenic 35.0%
TTATAAGGTTTGCACTTGGA+GGG - chr3_4:78015211-78015230 None:intergenic 35.0%
TTTATAAGGTTTGCACTTGG+AGG - chr3_4:78015212-78015231 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG + chr3_4:78015231-78015250 Msa0524570:CDS 35.0%
TTTAGCTGACAAATCTTCAC+TGG + chr3_4:78015280-78015299 Msa0524570:CDS 35.0%
TTGAAGAAACAGTAGCTATC+GGG - chr3_4:78015380-78015399 None:intergenic 35.0%
CTTGAAGAAACAGTAGCTAT+CGG - chr3_4:78015381-78015400 None:intergenic 35.0%
! TATCTCTAATTGGGAAGCAT+AGG + chr3_4:78015454-78015473 Msa0524570:intron 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG + chr3_4:78015754-78015773 Msa0524570:intron 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG + chr3_4:78015755-78015774 Msa0524570:intron 35.0%
TTGACACCCAAAAGCTAAAA+AGG - chr3_4:78015764-78015783 None:intergenic 35.0%
TTTGAGCACTTGTATATGCA+AGG + chr3_4:78015832-78015851 Msa0524570:intron 35.0%
TGAAGTTGTATTCTTTAGGC+AGG + chr3_4:78015867-78015886 Msa0524570:intron 35.0%
TTGTATTCTTTAGGCAGGAT+TGG + chr3_4:78015872-78015891 Msa0524570:intron 35.0%
CAATGGTAAGTATTTCCTCT+TGG + chr3_4:78016345-78016364 Msa0524570:intron 35.0%
CTGAAGAATCAGGAATTTAC+CGG + chr3_4:78016442-78016461 Msa0524570:CDS 35.0%
CACGTTTGCAATACTAAAGT+AGG - chr3_4:78016519-78016538 None:intergenic 35.0%
TATTGCTTGAAAGCTCTTGT+TGG + chr3_4:78016589-78016608 Msa0524570:intron 35.0%
CAAGTATGACTCTGATTGAA+GGG - chr3_4:78016635-78016654 None:intergenic 35.0%
ACAAGTATGACTCTGATTGA+AGG - chr3_4:78016636-78016655 None:intergenic 35.0%
! TGGATCTTTCCTTTTATCTC+TGG - chr3_4:78016660-78016679 None:intergenic 35.0%
TTCTTACTGAGAACATGTGA+CGG + chr3_4:78017031-78017050 Msa0524570:intron 35.0%
!!! AACATGTGACGGTTCTTTTT+TGG + chr3_4:78017042-78017061 Msa0524570:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG - chr3_4:78017340-78017359 None:intergenic 35.0%
! GGAGGAACATAATTTTCTGT+AGG - chr3_4:78017382-78017401 None:intergenic 35.0%
! GATTTTTCACCAAAATCTCC+AGG - chr3_4:78017416-78017435 None:intergenic 35.0%
TTCATGTAGTAACCTTTGTG+GGG + chr3_4:78017455-78017474 Msa0524570:three_prime_UTR 35.0%
TTTCCAAATCCCTACTGAAA+CGG + chr3_4:78017559-78017578 Msa0524570:three_prime_UTR 35.0%
TAAATGGCTGCATATGAATG+AGG + chr3_4:78017709-78017728 Msa0524570:three_prime_UTR 35.0%
TAATGTTATAGGTGGGGTGA+TGG + chr3_4:78013443-78013462 Msa0524570:five_prime_UTR 40.0%
AAACTAACTGGAGCTAGCAA+TGG + chr3_4:78013488-78013507 Msa0524570:exon 40.0%
ATAAGAGCTGGATTGTTGGA+AGG - chr3_4:78013537-78013556 None:intergenic 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG - chr3_4:78013602-78013621 None:intergenic 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG + chr3_4:78013666-78013685 Msa0524570:CDS 40.0%
! ACAACATGCGTTCCTTTTTC+TGG + chr3_4:78013711-78013730 Msa0524570:CDS 40.0%
GCAAAGTCAGTCTCAATTGT+AGG - chr3_4:78013767-78013786 None:intergenic 40.0%
TATTCTGTCTTGTCTTGCAG+TGG + chr3_4:78013787-78013806 Msa0524570:intron 40.0%
ACTTCAACAAGACCCCAAAA+TGG + chr3_4:78013829-78013848 Msa0524570:CDS 40.0%
!!! CCCCAAAATGGCTTCTTTTT+TGG + chr3_4:78013841-78013860 Msa0524570:CDS 40.0%
!! TTTTAGAGGGAAGCTCAAGA+GGG - chr3_4:78013895-78013914 None:intergenic 40.0%
!! TTTTTAGAGGGAAGCTCAAG+AGG - chr3_4:78013896-78013915 None:intergenic 40.0%
CTACATGAAAGTGGGAAAAG+AGG - chr3_4:78014072-78014091 None:intergenic 40.0%
CTCTTCTCTCTACATGAAAG+TGG - chr3_4:78014081-78014100 None:intergenic 40.0%
GGCTTGTAGATTCTGTAGTA+AGG + chr3_4:78014103-78014122 Msa0524570:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG + chr3_4:78014122-78014141 Msa0524570:intron 40.0%
CTTATCCCATTAAGTGTGGT+CGG - chr3_4:78014250-78014269 None:intergenic 40.0%
GGCAAGAGAGAAAACAAAAC+AGG - chr3_4:78014295-78014314 None:intergenic 40.0%
TTCTCTCTTGCCATCCAAAA+AGG + chr3_4:78014303-78014322 Msa0524570:intron 40.0%
TAATGCTTTGGCCATAGATG+TGG + chr3_4:78014588-78014607 Msa0524570:intron 40.0%
AATGCTTTGGCCATAGATGT+GGG + chr3_4:78014589-78014608 Msa0524570:intron 40.0%
AAAACTTGCAGGCAACAAGA+GGG - chr3_4:78014666-78014685 None:intergenic 40.0%
GATAAACTCTTGCCTTGCAA+AGG - chr3_4:78014799-78014818 None:intergenic 40.0%
CAATCTCATCATTTCCGTCA+CGG + chr3_4:78015090-78015109 Msa0524570:CDS 40.0%
AGATTGAGGAAATACCGTGA+CGG - chr3_4:78015107-78015126 None:intergenic 40.0%
GAGGGCCTATCTGAATTTAA+TGG - chr3_4:78015193-78015212 None:intergenic 40.0%
! ATGGACTGCAAAAGATGTTG+TGG + chr3_4:78015250-78015269 Msa0524570:CDS 40.0%
ACAGACCAGAGAGTTAAGAA+TGG + chr3_4:78015605-78015624 Msa0524570:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG + chr3_4:78015897-78015916 Msa0524570:intron 40.0%
ACCTTTGTGACGTAAACAGT+TGG - chr3_4:78015901-78015920 None:intergenic 40.0%
GGATTTACACTACAGATCAC+AGG - chr3_4:78015930-78015949 None:intergenic 40.0%
ATTGTCTCCTCACAGATTGA+AGG + chr3_4:78016275-78016294 Msa0524570:intron 40.0%
TACTTTGGACTTGTGACTGA+TGG + chr3_4:78016410-78016429 Msa0524570:intron 40.0%
GTTGTACAGTCTGAAGAATC+AGG + chr3_4:78016432-78016451 Msa0524570:intron 40.0%
CTGTTGAAGCAACATAATGC+CGG - chr3_4:78016464-78016483 None:intergenic 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG - chr3_4:78016811-78016830 None:intergenic 40.0%
AATCTCCAGGGATCTTTGTA+TGG - chr3_4:78017403-78017422 None:intergenic 40.0%
! ACAAAGATCCCTGGAGATTT+TGG + chr3_4:78017404-78017423 Msa0524570:CDS 40.0%
ACATGAATTTCACCCCACAA+AGG - chr3_4:78017470-78017489 None:intergenic 40.0%
AAGAGACAACCGTTTCAGTA+GGG - chr3_4:78017571-78017590 None:intergenic 40.0%
AAAGAGACAACCGTTTCAGT+AGG - chr3_4:78017572-78017591 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTT+AGG + chr3_4:78017572-78017591 Msa0524570:three_prime_UTR 40.0%
CTGAAACGGTTGTCTCTTTA+GGG + chr3_4:78017573-78017592 Msa0524570:three_prime_UTR 40.0%
!! TATAGGTGGGGTGATGGAAT+TGG + chr3_4:78013449-78013468 Msa0524570:five_prime_UTR 45.0%
TGGAATTGGAAATCGCGAAG+TGG + chr3_4:78013463-78013482 Msa0524570:five_prime_UTR 45.0%
GGATTACCCTCCTGAAGATA+AGG - chr3_4:78013575-78013594 None:intergenic 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG - chr3_4:78013608-78013627 None:intergenic 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG - chr3_4:78013613-78013632 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG + chr3_4:78013669-78013688 Msa0524570:CDS 45.0%
ATGTAGCCGACCACACTTAA+TGG + chr3_4:78014241-78014260 Msa0524570:intron 45.0%
TGTAGCCGACCACACTTAAT+GGG + chr3_4:78014242-78014261 Msa0524570:intron 45.0%
CACTAGTGATCCCACATCTA+TGG - chr3_4:78014602-78014621 None:intergenic 45.0%
AAACTTGCAGGCAACAAGAG+GGG - chr3_4:78014665-78014684 None:intergenic 45.0%
GAAAACTTGCAGGCAACAAG+AGG - chr3_4:78014667-78014686 None:intergenic 45.0%
AATTCCTTGCAGCTAATGCG+CGG + chr3_4:78015032-78015051 Msa0524570:intron 45.0%
! AGTAGCTATCGGGTATTGCT+CGG - chr3_4:78015370-78015389 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG - chr3_4:78016014-78016033 None:intergenic 45.0%
AGATTGAAGGCGAACCTTAC+TGG + chr3_4:78016288-78016307 Msa0524570:intron 45.0%
GCTTCAACAGCAGAAAGAGA+TGG + chr3_4:78016474-78016493 Msa0524570:CDS 45.0%
TGACTCTGATTGAAGGGAAG+AGG - chr3_4:78016629-78016648 None:intergenic 45.0%
!!! CTTTTTTCCACTGTGGACTG+AGG - chr3_4:78016812-78016831 None:intergenic 45.0%
!!! GAGGGTACTTTTTTCCACTG+TGG - chr3_4:78016819-78016838 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+TGG + chr3_4:78016856-78016875 Msa0524570:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG + chr3_4:78017395-78017414 Msa0524570:CDS 45.0%
CAACCGTTTCAGTAGGGATT+TGG - chr3_4:78017565-78017584 None:intergenic 45.0%
!! AAAATAATAAATATTTGTAT+TGG + chr3_4:78016699-78016718 Msa0524570:intron 5.0%
CGCGAAGTGGTGAAACTAAC+TGG + chr3_4:78013476-78013495 Msa0524570:five_prime_UTR 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG + chr3_4:78014337-78014356 Msa0524570:intron 50.0%
GCAGCCGATGAATATCGTTC+TGG - chr3_4:78014748-78014767 None:intergenic 50.0%
! TAGCTATCGGGTATTGCTCG+GGG - chr3_4:78015368-78015387 None:intergenic 50.0%
! GTAGCTATCGGGTATTGCTC+GGG - chr3_4:78015369-78015388 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG - chr3_4:78015613-78015632 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG + chr3_4:78015617-78015636 Msa0524570:intron 50.0%
ACATGCTCACGTGTCTGTGT+TGG - chr3_4:78016082-78016101 None:intergenic 50.0%
AGGTTCGCCTTCAATCTGTG+AGG - chr3_4:78016285-78016304 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr3_4:78016837-78016856 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3_4:78016836-78016855 None:intergenic 50.0%
TAGACGCAGTTGATCAGTGG+CGG - chr3_4:78016968-78016987 None:intergenic 50.0%
AGCTAGACGCAGTTGATCAG+TGG - chr3_4:78016971-78016990 None:intergenic 50.0%
CTCCAGGGATCTTTGTATGG+AGG - chr3_4:78017400-78017419 None:intergenic 50.0%
TGTCTTGCAGTGGCTCTTGC+TGG + chr3_4:78013797-78013816 Msa0524570:intron 55.0%
TGCCATCCAAAAAGGCCCAG+CGG + chr3_4:78014311-78014330 Msa0524570:intron 55.0%
! ATCAGTGGCGGAGGAAATGC+TGG - chr3_4:78016956-78016975 None:intergenic 55.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG - chr3_4:78016796-78016815 None:intergenic 60.0%
CTTCGACCCTCAGTCCACAG+TGG + chr3_4:78016802-78016821 Msa0524570:CDS 60.0%
ACGCAGTTGATCAGTGGCGG+AGG - chr3_4:78016965-78016984 None:intergenic 60.0%
! CGCCGCTGGGCCTTTTTGGA+TGG - chr3_4:78014316-78014335 None:intergenic 65.0%
GCAGCCGCGCATTAGCTGCA+AGG - chr3_4:78015039-78015058 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG - chr3_4:78015996-78016015 None:intergenic 65.0%
! GCTGCGCCGCTGGGCCTTTT+TGG - chr3_4:78014320-78014339 None:intergenic 70.0%
GGGCAACAAGCTGCGCCGCT+GGG - chr3_4:78014329-78014348 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG - chr3_4:78014330-78014349 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78013443 78017739 78013443 ID=Msa0524570;Name=Msa0524570
chr3_4 mRNA 78013443 78017739 78013443 ID=Msa0524570-mRNA-1;Parent=Msa0524570;Name=Msa0524570-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|0.9|0.81|11|280|296
chr3_4 exon 78013443 78013732 78013443 ID=Msa0524570-mRNA-1:exon:23014;Parent=Msa0524570-mRNA-1
chr3_4 exon 78013807 78013930 78013807 ID=Msa0524570-mRNA-1:exon:23015;Parent=Msa0524570-mRNA-1
chr3_4 exon 78014729 78014778 78014729 ID=Msa0524570-mRNA-1:exon:23016;Parent=Msa0524570-mRNA-1
chr3_4 exon 78015044 78015111 78015044 ID=Msa0524570-mRNA-1:exon:23017;Parent=Msa0524570-mRNA-1
chr3_4 exon 78015203 78015301 78015203 ID=Msa0524570-mRNA-1:exon:23018;Parent=Msa0524570-mRNA-1
chr3_4 exon 78015986 78016045 78015986 ID=Msa0524570-mRNA-1:exon:23019;Parent=Msa0524570-mRNA-1
chr3_4 exon 78016290 78016349 78016290 ID=Msa0524570-mRNA-1:exon:23020;Parent=Msa0524570-mRNA-1
chr3_4 exon 78016441 78016495 78016441 ID=Msa0524570-mRNA-1:exon:23021;Parent=Msa0524570-mRNA-1
chr3_4 exon 78016781 78016830 78016781 ID=Msa0524570-mRNA-1:exon:23022;Parent=Msa0524570-mRNA-1
chr3_4 exon 78017331 78017611 78017331 ID=Msa0524570-mRNA-1:exon:23023;Parent=Msa0524570-mRNA-1
chr3_4 exon 78017642 78017739 78017642 ID=Msa0524570-mRNA-1:exon:23024;Parent=Msa0524570-mRNA-1
chr3_4 five_prime_UTR 78013443 78013506 78013443 ID=Msa0524570-mRNA-1:five_prime_utr;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78013507 78013732 78013507 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78013807 78013930 78013807 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78014729 78014778 78014729 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78015044 78015111 78015044 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78015203 78015301 78015203 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78015986 78016045 78015986 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78016290 78016349 78016290 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78016441 78016495 78016441 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78016781 78016830 78016781 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 CDS 78017331 78017429 78017331 ID=Msa0524570-mRNA-1:cds;Parent=Msa0524570-mRNA-1
chr3_4 three_prime_UTR 78017430 78017611 78017430 ID=Msa0524570-mRNA-1:three_prime_utr;Parent=Msa0524570-mRNA-1
chr3_4 three_prime_UTR 78017642 78017739 78017642 ID=Msa0524570-mRNA-1:three_prime_utr;Parent=Msa0524570-mRNA-1
Gene Sequence

>Msa0524570

ATGGTTTTACACTCTCTATGGCTATGTCCTTCCAACAATCCAGCTCTTATTCTTCCCAATAACAACCTTATCTTCAGGAGGGTAATCCTTAACCAAAACCAAACCAAATGCTCCTTCCAACAATCCGATGATAAAAGAGATTTTTCATCATCTTCTTCTAGAAGGGATTTTGTGCTGTTAGGAGGCCTCACTTCACTATCTCTAACAACATGCGTTCCTTTTTCTGTGGCTCTTGCTGGAGATGAAGAACTTCAACAAGACCCCAAAATGGCTTCTTTTTTGGATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGGCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTGCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAAATTGAAGGCGAACCTTACTGGTATTATGAATACCTCATTCGTAAATCACCTAATTCAATGTCTGAAGAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCCTACAGAAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGA

Protein sequence

>Msa0524570

MVLHSLWLCPSNNPALILPNNNLIFRRVILNQNQTKCSFQQSDDKRDFSSSSSRRDFVLLGGLTSLSLTTCVPFSVALAGDEELQQDPKMASFLDEVNAYSYLYPLELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDEIEGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW*