AlfalfaGEDB | Msa0350840

M. sativa cultivar zhongmu-4 / Msa0350840

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350840	XP_003598881.2	94.732	1139	60	0	10	1148	11	1149	0.0	2193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350840	sp\|V9M398\|RUN1_VITRO	41.580	772	408	10	19	758	27	787	1.21e-173	554

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350840	G7J1L8	94.732	1139	60	0	10	1148	11	1149	0.0	2193

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054260	Msa0350840	0.814015	1.910623e-51	-8.615850e-47
Msa0055690	Msa0350840	0.804376	2.225149e-49	-8.615850e-47
Msa0055710	Msa0350840	0.816939	4.270151e-52	-8.615850e-47
Msa0100090	Msa0350840	0.823785	1.148931e-53	-8.615850e-47
Msa0140390	Msa0350840	0.821515	3.875512e-53	-8.615850e-47
Msa0141250	Msa0350840	0.800256	1.569615e-48	-8.615850e-47
Msa0171300	Msa0350840	0.812186	4.813090e-51	-8.615850e-47
Msa0197660	Msa0350840	0.823111	1.651094e-53	-8.615850e-47
Msa0212310	Msa0350840	0.825005	5.932538e-54	-8.615850e-47
Msa0223410	Msa0350840	-0.800943	1.136907e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0350840	MtrunA17_Chr3g0085731	94.732	1139	60	0	10	1148	11	1149	2193
Msa0350840	MtrunA17_Chr8g0339031	67.647	1088	312	7	16	1093	13	1070	1437
Msa0350840	MtrunA17_Chr8g0370511	62.953	1077	369	10	17	1081	9	1067	1310
Msa0350840	MtrunA17_Chr8g0338981	57.918	1143	433	10	16	1148	13	1117	1278
Msa0350840	MtrunA17_Chr8g0338901	57.826	1150	417	9	16	1148	33	1131	1273
Msa0350840	MtrunA17_Chr8g0338881	62.695	1024	367	5	13	1025	30	1049	1271
Msa0350840	MtrunA17_Chr5g0420331	62.006	1037	357	10	18	1043	11	1021	1263
Msa0350840	MtrunA17_Chr3g0085541	88.745	693	76	2	1	692	1	692	1262
Msa0350840	MtrunA17_Chr5g0420341	61.437	1058	380	9	1	1047	1	1041	1261
Msa0350840	MtrunA17_Chr7g0223531	62.500	1080	371	12	19	1077	10	1076	1259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0350840	AT5G36930.4	43.593	757	412	9	15	767	10	755	0.0	611
Msa0350840	AT5G36930.1	43.593	757	412	9	15	767	10	755	0.0	611
Msa0350840	AT5G36930.2	43.593	757	412	9	15	767	13	758	0.0	610
Msa0350840	AT5G36930.3	43.593	757	412	9	15	767	10	755	0.0	610
Msa0350840	AT5G17680.2	39.470	755	421	14	17	758	16	747	1.80e-155	502
Msa0350840	AT5G17680.1	39.338	755	421	15	17	758	16	746	7.78e-153	495
Msa0350840	AT1G27170.1	34.387	791	463	11	19	760	14	797	1.12e-141	467
Msa0350840	AT1G27170.2	33.502	791	468	11	19	760	16	797	3.05e-133	444
Msa0350840	AT1G27180.5	33.706	804	462	16	19	760	12	806	9.23e-129	431
Msa0350840	AT1G27180.8	33.706	804	462	16	19	760	12	806	9.23e-129	431

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Find 250 sgRNAs with CRISPR-Local

Find 743 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTCTTGCCTCTCTTT+TGG	0.273855	3_1:-16257903	None:intergenic
AAACTTGTGAATCAGATAAA+GGG	0.455643	3_1:+16258596	Msa0350840:CDS
AAAGGAAGCTGCATTCGAGT+GGG	0.634529	3_1:+16263982	Msa0350840:intron
AAAGGAAGCTGCATTCGAGT+GGG	0.634529	3_1:+16267349	Msa0350840:CDS
AAATTATAAATGTTTAGGGT+TGG	0.436243	3_1:+16258786	Msa0350840:CDS
AAATTGAAAATAAGCTATGA+TGG	0.479444	3_1:+16259111	Msa0350840:CDS
AACAACTGAGATGGGTCAAT+TGG	0.417644	3_1:+16259890	Msa0350840:CDS
AACACTACACAGAATCTAGT+TGG	0.543175	3_1:+16257721	Msa0350840:CDS
AACATTTATAATTTCCACAT+AGG	0.512024	3_1:-16258777	None:intergenic
AACCATCACCTGATGTGAAG+AGG	0.597096	3_1:+16262719	Msa0350840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATTTGATGTCTCAACAA+TGG	+	chr3_1:16257505-16257524	Msa0350840:CDS	30.0%
ACGTGTTCATAAATTTCAGA+GGG	+	chr3_1:16257535-16257554	Msa0350840:CDS	30.0%
TGACGATGAAAAGCTTAAAA+AGG	+	chr3_1:16257629-16257648	Msa0350840:CDS	30.0%
GACGATGAAAAGCTTAAAAA+GGG	+	chr3_1:16257630-16257649	Msa0350840:CDS	30.0%
ATGAAAAGCTTAAAAAGGGA+TGG	+	chr3_1:16257634-16257653	Msa0350840:CDS	30.0%
TGAAAAGCTTAAAAAGGGAT+GGG	+	chr3_1:16257635-16257654	Msa0350840:CDS	30.0%
CACCGCAAAACTAATAATAA+CGG	+	chr3_1:16257774-16257793	Msa0350840:CDS	30.0%
TAATTTAGGGACTAACTTGA+TGG	+	chr3_1:16258106-16258125	Msa0350840:intron	30.0%
ACTGAAGAGAGTAATAGTTT+AGG	+	chr3_1:16258190-16258209	Msa0350840:intron	30.0%
AATCTTATTGTAGATGCCTT+TGG	-	chr3_1:16258533-16258552	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	16257477	16267511	16257477	ID=Msa0350840;Name=Msa0350840
chr3_1	mRNA	16257477	16267511	16257477	ID=Msa0350840-mRNA-1;Parent=Msa0350840;Name=Msa0350840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.57\|0.25\|0.62\|1\|1\|8\|0\|1307
chr3_1	exon	16257477	16257991	16257477	ID=Msa0350840-mRNA-1:exon:3925;Parent=Msa0350840-mRNA-1
chr3_1	exon	16258333	16259431	16258333	ID=Msa0350840-mRNA-1:exon:3926;Parent=Msa0350840-mRNA-1
chr3_1	exon	16259742	16260017	16259742	ID=Msa0350840-mRNA-1:exon:3927;Parent=Msa0350840-mRNA-1
chr3_1	exon	16260130	16260885	16260130	ID=Msa0350840-mRNA-1:exon:3928;Parent=Msa0350840-mRNA-1
chr3_1	exon	16262079	16262846	16262079	ID=Msa0350840-mRNA-1:exon:3929;Parent=Msa0350840-mRNA-1
chr3_1	exon	16263986	16264127	16263986	ID=Msa0350840-mRNA-1:exon:3930;Parent=Msa0350840-mRNA-1
chr3_1	exon	16265689	16265893	16265689	ID=Msa0350840-mRNA-1:exon:3931;Parent=Msa0350840-mRNA-1
chr3_1	exon	16267349	16267511	16267349	ID=Msa0350840-mRNA-1:exon:3932;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16257477	16257991	16257477	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16258333	16259431	16258333	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16259742	16260017	16259742	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16260130	16260885	16260130	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16262079	16262846	16262079	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16263986	16264127	16263986	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16265689	16265893	16265689	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1
chr3_1	CDS	16267349	16267511	16267349	ID=Msa0350840-mRNA-1:cds;Parent=Msa0350840-mRNA-1

Gene Sequence

>Msa0350840

ATGTCATCTTCATCGTCATCGTCATCGTTCAATTTGATGTCTCAACAATGGATCTACGACGTGTTCATAAATTTCAGAGGGGAAGACACGCGTAAGAGCTTGGTTTCTCATCTATATGCAGCTCTCTCAAACGCGGGAATCAACACTTTTCTTGACGATGAAAAGCTTAAAAAGGGATGGGAAGTAGAACCAGAACTATTGCGAGCTATACAAGGGTCTCAAATATGTTTGGTTATTTTCTCAGAACACTACACAGAATCTAGTTGGTGTCTTGTTGAACTGGTGAAAATCATGGAACACCGCAAAACTAATAATAACGGTCCAGTGGTTATCCCCATATTTTACCATGTTGACCCTTCTGTCGTTCGTCGTCAGGCGGGTGATTTTGGAAAAGCTTTGGAAGCTATTACCAAAAGAATTCACCCACCAAAAGAGAGGCAAGAACTTTTGCGGACATGGAAGCGTGCTCTTACCCAAGCTGCAAATATTTCTGGATGGGATTCCAGCATTTTCAGGAGTGAAAATGAACTAGTGCATAAAATTGTTGATGAAGTTTTGAGAAAGCTGGAAAACACATTCTTGCCTACAACAGAATTCCCAGTTGGACTAGAGTCCCGTGTGGATCAAGTGATTTTGTCGATTGAAAATCAATCAAGCAAAGTGTCTATGGTAGGGATTTGGGGAATGGGCGGGTTGGGTAAAACTACCACAGCCAAAGGCATCTACAATAAGATTCATCGCAAATTTGTGCATAGAAGTTTCATTGAGAATATTAGACAAACTTGTGAATCAGATAAAGGGTATATTCGTTTACAACAACAACTTCTTTCAGATCTCTTCAAAACAAAGGAGAAGATACACAACATTGCATCAGGGACAACTACAATCAACAAAAGACTCTTCGCAAAAAAGGTACTCATTGTACTTGATGATGTGACCAAAGTTCAGCAGGTAAAAGCCCTATGTGGAAATTATAAATGTTTAGGGTTGGGAAGTGTACTAATTGTTACAACCAGAGATGCACACGTGCTTAAGTCACTTGAAGTTGACTGCGTCTGTACAGCCAAAGAAATGGATGAAAATGAGTCCCTTGAACTTTTCAGTTGGCATGCTTTTAGAAACGCGACTCCAAGAGCAAACTTCAGTGATCTCTCAAAAAATGTAGTTAATTACTGTGGAGGATTACCCTTGGCTGTTGAAGTCCTCGGATCTTACTTATTTGAAAGGACAAAAGAAGAATGGAAAAGTGTGCTATCAAAATTAGAAAAAATTCCCCATGAAGAAGTGCAAGAGAAATTGAAAATAAGCTATGATGGTTTGACAGATGACACGAAAAAGGCTATATTTCTTGATGTATGTTGTTTCTTTATCGGCAAGGACAGAGACTATGTTACTGAGATACTAAACGGTTGTGGACTTTTTGCTGGTATAGGAATAGCTGTCCTCATAGAGAGGAGCCTTTTAAAAGTTGAAAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTATTCGTGGAAGTTCAACAAACGATCCAGGGGAGCGTAGTCGGTTGTGGTTTCACGAGGATGCACAAAGTGTTTTGACCAAGAATACGGGAACACAAAAAGTTGAGGGATTGATTTTGAACTTGCAAAGTAAAGGCAGAGATAGCTTCAGTACCAATGTTTTCCAACAGATGCAGAACATGAGACTTTTGCAACTTGATTGTGTTGACCTCACTGGAGATTTTAGACATCTTTCCAAACAACTGAGATGGGTCAATTGGCAACGATCTACCTTCAGCTGTATACCGAATGACTTTTATCAAGGAAATCTAGTTGTTTTAGAATTAAAATTTAGCAATGTTAAACAAGTTTGGAAGGAAACCAAGTTGTTGGACAAGCTAAAAATACTCAATCTCAGTCATTCCAAGTACTTGAAAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGGATTGTCCAAGTTTGTCCGAGATACACCCGTCCATTGGAGTTCTAAAGAAGCTTCTTCTGATAAATTTGAAGGACTGCACAAGTCTTGGCAATCTACCTAGGGAGATCTATCAGCTGATATCTGTGAAAACTCTCATCATTTTTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAATGCAAATGAAATCCTTAACAACTCTAGTTGCAGCAAATACTGGCGTCAAACAAGCACCCTTTTCCATTGTTAGATCAAAAAGCATTGTGTATATATCCCTGTGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACAATGAATCCCTTGCCACATATTCCCCCCACATCCTTGGATGTAGAGAGTAATAATTTGGTTTTGGGTTATCAATCATCAATGCGCAGTAGTTGTTCAGAACATAGAAGTGTTAGGGTAGAATGCCAATCGGTGATTCAACTAATTCAAAAATTAACAAGTTTTCTTGATGGTCTATATGGTGCAAATCTTACTGAATCGGAAAAATCGCATGCATCAAAAATCTCGGATATTTCCTTGAAATCTTTTTTGATTACAATGGGAAGTTGCCACATAGTTGTCGATGCTCTTGGAAAGAGCTTATCACAGGGATTGACAATCAATGATTCTAGTGATTCTTTACTTCCGGGTGACAATTATCCTTCTTGGTTAGCCTATACAAGTGAAGGACCTTCAGTACGATTTGAAGTGCCTGAGGATTGTGATGGTTGCTTGAAGGGAATAACTTTATATGTTGTTTATTCATCCATGTCTGAAAACATGGAAACTGAATGTCTGATTAGTGTTTTGATCATTAATTACACAAAATTCACGCTCCATATATACAAGCGAGATACAGTAATGTCCTTTAACGATGAAGACTGGCAGAGTGTAATATCAAATTTAGCAGTTGGGGACAATGTGGGGATATTTGTAGCTTTTGGGCATGGATTGACTGTTAAGAAGACAGTTGTCTATCTAACATATGCCGAGTCAAGTGCTATGAAAACTGAGCAATCAAATACTGTGGAAGTTAAACCATCTAGTGATGTGCAAACGGAGCCATTACCTGAACCGGAAATGCAACCATCATCTAATGTGAAAATGGAGCCATCACTAGAAGAAGTGCAGCCATCGGCTGATATGAAGATGGAACCATTACCTGAACTGGAAGTGAAACCATCGTCTAATGTGAAAAGGGAGGTATCACCTGATGTGAAGATGGAGCCATTACCTGAACCGGAAGTGCAACCATCACCTGATGTGAAGAGGGAGCCATCACTTGAAGATGAAGTGCAGCAATCACTTGATGTGAAGATGGAGCCATCACCTATCATCAAGAATGAACCATTACCTAAGAGAAATAAAAAAATATTTGAAGCTGCATTCGAGTGGGCAGATGAGTGTGAAGCATCACTTACCCACCTCAAACGAGCATTGTCGCAACCACCAGTCTTATCTCATCCCGAAGAAGGAGAGACTTTGTACATATACTTATCTGTGGCCATAGATGTCGTTGTGGCGAGTAACTCTGCTCGCAATGGTGAGCAAAGCGTGCATTCTGGGTTCCTAAGTCCTTACTCGCAGTGGCGAGTTATTCTGCTCGCAGTTGCGAGCTTACAGGTCACTCGCAGTTGCGAGTTGCATTGCTCGCAGATGCGAGCTCTGGGTTCTAGCTCGCCGTTGCGAGTGTTCTTGCTCGCAGATGCGAGCGATGAATGTCAAAAGGAAGCTGCATTCGAGTGGGCAGATGAGTGTGAAGCATCACTTACCCACCTCAAACGAGCATTGTCGCAACCACCAGTCTTATCTCATCCCGAAGAAGGAGAGACTTTGTACATATACTTATCTGTGGCCATAGATGTCGTTGGTGCTGCACTTATTTGA

Protein sequence

>Msa0350840

MSSSSSSSSFNLMSQQWIYDVFINFRGEDTRKSLVSHLYAALSNAGINTFLDDEKLKKGWEVEPELLRAIQGSQICLVIFSEHYTESSWCLVELVKIMEHRKTNNNGPVVIPIFYHVDPSVVRRQAGDFGKALEAITKRIHPPKERQELLRTWKRALTQAANISGWDSSIFRSENELVHKIVDEVLRKLENTFLPTTEFPVGLESRVDQVILSIENQSSKVSMVGIWGMGGLGKTTTAKGIYNKIHRKFVHRSFIENIRQTCESDKGYIRLQQQLLSDLFKTKEKIHNIASGTTTINKRLFAKKVLIVLDDVTKVQQVKALCGNYKCLGLGSVLIVTTRDAHVLKSLEVDCVCTAKEMDENESLELFSWHAFRNATPRANFSDLSKNVVNYCGGLPLAVEVLGSYLFERTKEEWKSVLSKLEKIPHEEVQEKLKISYDGLTDDTKKAIFLDVCCFFIGKDRDYVTEILNGCGLFAGIGIAVLIERSLLKVEKNNKLGMHDLIRDMGREIIRGSSTNDPGERSRLWFHEDAQSVLTKNTGTQKVEGLILNLQSKGRDSFSTNVFQQMQNMRLLQLDCVDLTGDFRHLSKQLRWVNWQRSTFSCIPNDFYQGNLVVLELKFSNVKQVWKETKLLDKLKILNLSHSKYLKSTPDFSKLPNLEKLIMKDCPSLSEIHPSIGVLKKLLLINLKDCTSLGNLPREIYQLISVKTLIIFGCSKIDKLEEDIMQMKSLTTLVAANTGVKQAPFSIVRSKSIVYISLCGYEGLSRDVFPSLIWSWMSPTMNPLPHIPPTSLDVESNNLVLGYQSSMRSSCSEHRSVRVECQSVIQLIQKLTSFLDGLYGANLTESEKSHASKISDISLKSFLITMGSCHIVVDALGKSLSQGLTINDSSDSLLPGDNYPSWLAYTSEGPSVRFEVPEDCDGCLKGITLYVVYSSMSENMETECLISVLIINYTKFTLHIYKRDTVMSFNDEDWQSVISNLAVGDNVGIFVAFGHGLTVKKTVVYLTYAESSAMKTEQSNTVEVKPSSDVQTEPLPEPEMQPSSNVKMEPSLEEVQPSADMKMEPLPELEVKPSSNVKREVSPDVKMEPLPEPEVQPSPDVKREPSLEDEVQQSLDVKMEPSPIIKNEPLPKRNKKIFEAAFEWADECEASLTHLKRALSQPPVLSHPEEGETLYIYLSVAIDVVVASNSARNGEQSVHSGFLSPYSQWRVILLAVASLQVTRSCELHCSQMRALGSSSPLRVFLLADASDECQKEAAFEWADECEASLTHLKRALSQPPVLSHPEEGETLYIYLSVAIDVVGAALI*