Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393280 | P46287.1 | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 4.56e-130 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393280 | sp|P46287|RL11_MEDSA | 100.000 | 181 | 0 | 0 | 1 | 181 | 1 | 181 | 5.69e-133 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393280 | A0A3Q7K723 | 99.448 | 181 | 1 | 0 | 1 | 181 | 1 | 181 | 6.11e-130 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027260 | Msa0393280 | 0.822265 | 2.597744e-53 | -8.615850e-47 |
| Msa0032090 | Msa0393280 | 0.812562 | 3.983438e-51 | -8.615850e-47 |
| Msa0032430 | Msa0393280 | 0.805222 | 1.481145e-49 | -8.615850e-47 |
| Msa0040690 | Msa0393280 | 0.818888 | 1.549779e-52 | -8.615850e-47 |
| Msa0172070 | Msa0393280 | 0.803210 | 3.886611e-49 | -8.615850e-47 |
| Msa0393280 | Msa0393370 | 0.970556 | 8.492189e-132 | -8.615850e-47 |
| Msa0393280 | Msa0419410 | 0.803971 | 2.702362e-49 | -8.615850e-47 |
| Msa0393280 | Msa0523120 | 0.802786 | 4.756539e-49 | -8.615850e-47 |
| Msa0393280 | Msa0532070 | 0.804107 | 2.532212e-49 | -8.615850e-47 |
| Msa0393280 | Msa0588360 | 0.821312 | 4.317065e-53 | -8.615850e-47 |
| Msa0393280 | Msa0615440 | 0.833114 | 6.420909e-56 | -8.615850e-47 |
| Msa0393280 | Msa0689260 | 0.809765 | 1.609785e-50 | -8.615850e-47 |
| Msa0393280 | Msa0698490 | 0.830583 | 2.706541e-55 | -8.615850e-47 |
| Msa0393280 | Msa0698660 | 0.827229 | 1.755739e-54 | -8.615850e-47 |
| Msa0393280 | Msa1006840 | 0.833160 | 6.256195e-56 | -8.615850e-47 |
| Msa0393280 | Msa1012740 | 0.831648 | 1.481495e-55 | -8.615850e-47 |
| Msa0393280 | Msa1043690 | 0.811442 | 6.988106e-51 | -8.615850e-47 |
| Msa0393280 | Msa1051880 | 0.814278 | 1.671357e-51 | -8.615850e-47 |
| Msa0393280 | Msa1104140 | 0.813151 | 2.959740e-51 | -8.615850e-47 |
| Msa0393280 | Msa1135890 | 0.846916 | 1.608340e-59 | -8.615850e-47 |
| Msa0393280 | Msa1148910 | 0.803360 | 3.618616e-49 | -8.615850e-47 |
| Msa0393280 | Msa1358250 | 0.809078 | 2.259817e-50 | -8.615850e-47 |
| Msa0393280 | Msa1363330 | 0.804692 | 1.911856e-49 | -8.615850e-47 |
| Msa0393280 | Msa1374120 | 0.821516 | 3.873396e-53 | -8.615850e-47 |
| Msa0393280 | Msa1382620 | 0.822992 | 1.760225e-53 | -8.615850e-47 |
| Msa0393280 | Msa1386600 | 0.805904 | 1.065731e-49 | -8.615850e-47 |
| Msa0393280 | Msa1392780 | 0.813877 | 2.049302e-51 | -8.615850e-47 |
| Msa0250820 | Msa0393280 | 0.807029 | 6.171400e-50 | -8.615850e-47 |
| Msa0258390 | Msa0393280 | 0.801238 | 9.896430e-49 | -8.615850e-47 |
| Msa0264010 | Msa0393280 | 0.811453 | 6.948602e-51 | -8.615850e-47 |
| Msa0289580 | Msa0393280 | 0.841002 | 6.185795e-58 | -8.615850e-47 |
| Msa0289610 | Msa0393280 | 0.838428 | 2.892747e-57 | -8.615850e-47 |
| Msa0327300 | Msa0393280 | 0.805604 | 1.231988e-49 | -8.615850e-47 |
| Msa0335730 | Msa0393280 | 0.832183 | 1.093396e-55 | -8.615850e-47 |
| Msa0336010 | Msa0393280 | 0.815275 | 1.004691e-51 | -8.615850e-47 |
| Msa0357900 | Msa0393280 | 0.814982 | 1.167343e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393280 | MtrunA17_Chr8g0355901 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 5.23e-133 | 369 |
| Msa0393280 | MtrunA17_Chr3g0078591 | 100.000 | 179 | 0 | 0 | 3 | 181 | 4 | 182 | 1.52e-132 | 368 |
| Msa0393280 | MtrunA17_Chr4g0041531 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 4.75e-132 | 367 |
| Msa0393280 | MtrunA17_Chr3g0078581 | 81.818 | 143 | 26 | 0 | 38 | 180 | 2 | 144 | 3.29e-84 | 244 |
| Msa0393280 | MtrunA17_Chr7g0264261 | 88.095 | 42 | 5 | 0 | 1 | 42 | 1 | 42 | 1.33e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393280 | AT2G42740.1 | 96.133 | 181 | 7 | 0 | 1 | 181 | 1 | 181 | 1.87e-129 | 361 |
| Msa0393280 | AT4G18730.1 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 9.59e-129 | 359 |
| Msa0393280 | AT3G58700.1 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 9.59e-129 | 359 |
| Msa0393280 | AT5G45775.2 | 95.580 | 181 | 8 | 0 | 1 | 181 | 1 | 181 | 9.59e-129 | 359 |
| Msa0393280 | AT5G45775.1 | 95.322 | 171 | 8 | 0 | 11 | 181 | 1 | 171 | 1.18e-120 | 338 |
Find 63 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCCACTGGTATTTA+TGG | 0.136205 | 3_2:-7368341 | Msa0393280:CDS |
| CAATTGCCTGGGACTTGTTT+AGG | 0.246867 | 3_2:+7368177 | None:intergenic |
| CGACAAGGCAATGCAGCTTT+TGG | 0.255810 | 3_2:-7368775 | Msa0393280:CDS |
| TTCAGTGATACCGGATGTTT+TGG | 0.275627 | 3_2:-7368708 | Msa0393280:CDS |
| TATCCAGGAACATATTGATT+TGG | 0.290604 | 3_2:-7368679 | Msa0393280:CDS |
| TGCACTTTGATTTCCCTCAT+TGG | 0.303574 | 3_2:+7369717 | None:intergenic |
| CTCGGGATATGGTGTATACT+AGG | 0.320898 | 3_2:+7370812 | None:intergenic |
| GGCAATTGTTTAGTGAGTTC+AGG | 0.331162 | 3_2:-7368162 | Msa0393280:exon |
| GCATGCTACGTCACTGTTAG+AGG | 0.353505 | 3_2:-7368798 | Msa0393280:CDS |
| ATCCAGGAACATATTGATTT+GGG | 0.366765 | 3_2:-7368678 | Msa0393280:CDS |
| TATGGATTTCTTTGTTGTCT+TGG | 0.372237 | 3_2:-7368318 | Msa0393280:CDS |
| TTTAACTTGGAACCACTTCA+TGG | 0.385179 | 3_2:+7368214 | None:intergenic |
| TTCCCAAATCAATATGTTCC+TGG | 0.396627 | 3_2:+7368676 | None:intergenic |
| TCCGTTCCTTTGGTATTAGA+AGG | 0.399311 | 3_2:-7368833 | Msa0393280:CDS |
| AGAAAATACCTTAGCGGCTC+TGG | 0.400111 | 3_2:+7369647 | None:intergenic |
| TTCCACTGGTATTTATGGTA+TGG | 0.405174 | 3_2:-7368336 | Msa0393280:CDS |
| AGACGGTAACACTCGGGATA+TGG | 0.413441 | 3_2:+7370801 | None:intergenic |
| AAAATACCTTTGGAGAAAAC+AGG | 0.431508 | 3_2:+7369521 | None:intergenic |
| AGGTACACGGTCCGTTCCTT+TGG | 0.433646 | 3_2:-7368843 | Msa0393280:CDS |
| GGAAGGGTATAGTCGTCATT+TGG | 0.447297 | 3_2:-7370859 | Msa0393280:five_prime_UTR |
| ACGAAAGAGAACGGCGCGAG+AGG | 0.462934 | 3_2:+7370777 | None:intergenic |
| TCACACCTTCATATTTAACT+TGG | 0.469248 | 3_2:+7368201 | None:intergenic |
| GAACTCACTAAACAATTGCC+TGG | 0.471736 | 3_2:+7368165 | None:intergenic |
| TTTGTTGTCTTGGAGCGCCC+TGG | 0.474962 | 3_2:-7368308 | Msa0393280:CDS |
| AGTAGCTTAACTTTCTGCAT+TGG | 0.480913 | 3_2:-7368083 | Msa0393280:three_prime_UTR |
| AACAACCAATTCATTCCAAA+TGG | 0.483167 | 3_2:-7370741 | Msa0393280:intron |
| AACATCTCCGTCGGTGAAAG+TGG | 0.484770 | 3_2:-7369681 | Msa0393280:CDS |
| CGACGTCCCACACGATAACC+AGG | 0.485872 | 3_2:+7368290 | None:intergenic |
| CATCCTTTGTGACACGATGT+TGG | 0.510267 | 3_2:+7368240 | None:intergenic |
| AGGAGAAACTTCAGTGATAC+CGG | 0.515104 | 3_2:-7368717 | Msa0393280:CDS |
| TTCATTCCTTCTAATACCAA+AGG | 0.519643 | 3_2:+7368827 | None:intergenic |
| CGTAGGTGCAAGGCAAGAGT+TGG | 0.526727 | 3_2:-7368266 | Msa0393280:CDS |
| TCGTCTCACCAGAGCCGCTA+AGG | 0.538952 | 3_2:-7369655 | Msa0393280:intron |
| GGAGAGCGGTTTGAAGGTCA+AGG | 0.545050 | 3_2:-7368754 | Msa0393280:CDS |
| ATACTGAGAAAATACCTTAG+CGG | 0.552318 | 3_2:+7369641 | None:intergenic |
| GAGCGCCCTGGTTATCGTGT+GGG | 0.552380 | 3_2:-7368296 | Msa0393280:CDS |
| TTCAGGTATGATCCTTCCAC+TGG | 0.557425 | 3_2:-7368350 | Msa0393280:intron |
| AACTCACTAAACAATTGCCT+GGG | 0.561022 | 3_2:+7368166 | None:intergenic |
| GATACCGAAGCCAAAACATC+CGG | 0.566708 | 3_2:+7368698 | None:intergenic |
| TGGTTCCAAGTTAAATATGA+AGG | 0.567557 | 3_2:-7368206 | Msa0393280:CDS |
| TCAAGGAATATGAGCTGTTG+AGG | 0.569136 | 3_2:-7368737 | Msa0393280:CDS |
| GGAGCGCCCTGGTTATCGTG+TGG | 0.572642 | 3_2:-7368297 | Msa0393280:CDS |
| GAGAGGAAGACGGTAACACT+CGG | 0.585806 | 3_2:+7370794 | None:intergenic |
| TAGGTTCTTGAACAGCTAAG+TGG | 0.586306 | 3_2:-7369551 | Msa0393280:CDS |
| TGTGATCCTAAACAAGTCCC+AGG | 0.593737 | 3_2:-7368183 | Msa0393280:CDS |
| TCGGGATATGGTGTATACTA+GGG | 0.598867 | 3_2:+7370813 | None:intergenic |
| AGAACGGCGCGAGAGGAAGA+CGG | 0.603021 | 3_2:+7370784 | None:intergenic |
| GGGACGTCGTCGTAGGTGCA+AGG | 0.607035 | 3_2:-7368276 | Msa0393280:CDS |
| GAAACTGTCTAATCCAATGA+GGG | 0.609459 | 3_2:-7369730 | Msa0393280:CDS |
| ATCGTGTGGGACGTCGTCGT+AGG | 0.611248 | 3_2:-7368283 | Msa0393280:CDS |
| TCCTTCTAATACCAAAGGAA+CGG | 0.611594 | 3_2:+7368832 | None:intergenic |
| CAAAGGATGATGCCATGAAG+TGG | 0.613790 | 3_2:-7368226 | Msa0393280:CDS |
| ATCCATACCATAAATACCAG+TGG | 0.620651 | 3_2:+7368334 | None:intergenic |
| CTTATTGACAGCTAGGTACA+CGG | 0.623398 | 3_2:-7368856 | Msa0393280:intron |
| CTTGTACTCAACATCTCCGT+CGG | 0.623554 | 3_2:-7369690 | Msa0393280:CDS |
| CGTCACTGTTAGAGGCGACA+AGG | 0.626392 | 3_2:-7368790 | Msa0393280:CDS |
| AGAAACTGTCTAATCCAATG+AGG | 0.629710 | 3_2:-7369731 | Msa0393280:CDS |
| ATACCATAAATACCAGTGGA+AGG | 0.634245 | 3_2:+7368338 | None:intergenic |
| AGAGGAAGACGGTAACACTC+GGG | 0.643137 | 3_2:+7370795 | None:intergenic |
| ACGATCTCCACTTTCACCGA+CGG | 0.653039 | 3_2:+7369674 | None:intergenic |
| CTGACAGAAACGAAAGAGAA+CGG | 0.657341 | 3_2:+7370768 | None:intergenic |
| AATCCAACATCGTGTCACAA+AGG | 0.664970 | 3_2:-7368243 | Msa0393280:CDS |
| GACGTCCCACACGATAACCA+GGG | 0.726452 | 3_2:+7368291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAAAAAAATACCTT+TGG | + | chr3_2:7369288-7369307 | None:intergenic | 10.0% |
| !!! | CAAATAACATTAATTTATTT+TGG | - | chr3_2:7369556-7369575 | Msa0393280:intron | 10.0% |
| !!! | AATATTTTTCTTCAAATAAA+AGG | + | chr3_2:7370302-7370321 | None:intergenic | 10.0% |
| !! | TTTATTTGAAGAAAAATATT+CGG | - | chr3_2:7370302-7370321 | Msa0393280:intron | 10.0% |
| !! | ATTACTAAATAGAATAGAAT+AGG | + | chr3_2:7368123-7368142 | None:intergenic | 15.0% |
| !! | TATAATATAATGATCAACAA+TGG | - | chr3_2:7368947-7368966 | Msa0393280:intron | 15.0% |
| !! | CATTATTATTATGTCAATTT+CGG | + | chr3_2:7369031-7369050 | None:intergenic | 15.0% |
| !! | ATTGACATAATAATAATGAT+AGG | - | chr3_2:7369033-7369052 | Msa0393280:intron | 15.0% |
| !!! | AAAATATATGTACAAGTTTT+TGG | + | chr3_2:7369530-7369549 | None:intergenic | 15.0% |
| !! | AAAAAAATATACAAAGCAAA+AGG | + | chr3_2:7370356-7370375 | None:intergenic | 15.0% |
| !!! | CATAATTTTAAACATCAATA+TGG | + | chr3_2:7370425-7370444 | None:intergenic | 15.0% |
| !! | AATGATGCAATTACATAAAT+TGG | + | chr3_2:7368190-7368209 | None:intergenic | 20.0% |
| !!! | ATGTAATTGCATCATTTTTT+AGG | - | chr3_2:7368194-7368213 | Msa0393280:CDS | 20.0% |
| !!! | TGTAATTGCATCATTTTTTA+GGG | - | chr3_2:7368195-7368214 | Msa0393280:CDS | 20.0% |
| !!! | ATCATGTTGATTCTAATAAT+AGG | + | chr3_2:7368264-7368283 | None:intergenic | 20.0% |
| !!! | TATTAGAATCAACATGATTT+TGG | - | chr3_2:7368266-7368285 | Msa0393280:CDS | 20.0% |
| !! | AAACAAACTCTTATTATGTA+TGG | - | chr3_2:7368559-7368578 | Msa0393280:intron | 20.0% |
| !! | AAGATAATTCTATGTTCATT+TGG | + | chr3_2:7368913-7368932 | None:intergenic | 20.0% |
| !!! | TCAATATTTGCTAGTTTTTT+AGG | - | chr3_2:7369498-7369517 | Msa0393280:intron | 20.0% |
| !!! | ATGAAGTAATTTTTTCTTTC+CGG | + | chr3_2:7369593-7369612 | None:intergenic | 20.0% |
| !! | AAGAAAAAATTACTTCATAC+AGG | - | chr3_2:7369595-7369614 | Msa0393280:intron | 20.0% |
| !! | ACTTAGAAATACATATTTCA+AGG | - | chr3_2:7369794-7369813 | Msa0393280:intron | 20.0% |
| !!! | TTTTACCATTTGGAATGAAT+TGG | + | chr3_2:7368063-7368082 | None:intergenic | 25.0% |
| ! | TGCAATTACATAAATTGGAT+TGG | + | chr3_2:7368185-7368204 | None:intergenic | 25.0% |
| !! | TTAAAGTGTTTATCCAAACA+TGG | + | chr3_2:7368335-7368354 | None:intergenic | 25.0% |
| ! | AAACTAATGAAAACACCTTA+TGG | + | chr3_2:7368484-7368503 | None:intergenic | 25.0% |
| !!! | TTGATGGATTTCATATAGTT+TGG | - | chr3_2:7368768-7368787 | Msa0393280:CDS | 25.0% |
| !!! | TGATGGATTTCATATAGTTT+GGG | - | chr3_2:7368769-7368788 | Msa0393280:CDS | 25.0% |
| ! | TTATAGTTTAGGGACTAAAT+AGG | - | chr3_2:7368812-7368831 | Msa0393280:CDS | 25.0% |
| ! | TAGTAATGAAATTGAAAGGA+AGG | + | chr3_2:7369206-7369225 | None:intergenic | 25.0% |
| ! | AGGTTAGTAATGAAATTGAA+AGG | + | chr3_2:7369210-7369229 | None:intergenic | 25.0% |
| !!! | TGAAGTAATTTTTTCTTTCC+GGG | + | chr3_2:7369592-7369611 | None:intergenic | 25.0% |
| ! | ATACTAATGTTGTCAAAAAG+TGG | - | chr3_2:7369665-7369684 | Msa0393280:CDS | 25.0% |
| !! | ATATGTATTTCTAAGTGCAA+CGG | + | chr3_2:7369790-7369809 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCTTATGTTTCAA+AGG | - | chr3_2:7370385-7370404 | Msa0393280:intron | 25.0% |
| !! | GATGTTTAAAATTATGCTTC+AGG | - | chr3_2:7370429-7370448 | Msa0393280:intron | 25.0% |
| AACAACCAATTCATTCCAAA+TGG | - | chr3_2:7368055-7368074 | Msa0393280:three_prime_UTR | 30.0% | |
| !!! | AGAGAATTGGTTTTACCATT+TGG | + | chr3_2:7368073-7368092 | None:intergenic | 30.0% |
| GACTTATTGAGTTTAACTAC+TGG | + | chr3_2:7368534-7368553 | None:intergenic | 30.0% | |
| GATATTGGGGATTAAATTGA+TGG | + | chr3_2:7368730-7368749 | None:intergenic | 30.0% | |
| ! | ATCACTGGTATTGAGATATT+GGG | + | chr3_2:7368744-7368763 | None:intergenic | 30.0% |
| ! | AATCACTGGTATTGAGATAT+TGG | + | chr3_2:7368745-7368764 | None:intergenic | 30.0% |
| AATACCAGTGATTAGATTGA+TGG | - | chr3_2:7368752-7368771 | Msa0393280:CDS | 30.0% | |
| AAATCCATCAATCTAATCAC+TGG | + | chr3_2:7368759-7368778 | None:intergenic | 30.0% | |
| ! | GATGGATTTCATATAGTTTG+GGG | - | chr3_2:7368770-7368789 | Msa0393280:CDS | 30.0% |
| ! | GTTGTTAGTTTAGAGACTAA+TGG | - | chr3_2:7368841-7368860 | Msa0393280:CDS | 30.0% |
| AATGCACAAGTCAATTCTAT+GGG | + | chr3_2:7368977-7368996 | None:intergenic | 30.0% | |
| ATACTGAGAAAATACCTTAG+CGG | + | chr3_2:7369158-7369177 | None:intergenic | 30.0% | |
| ! | ACCTGTTTTATCTTTCTCAT+AGG | - | chr3_2:7369226-7369245 | Msa0393280:intron | 30.0% |
| ACCTATGAGAAAGATAAAAC+AGG | + | chr3_2:7369230-7369249 | None:intergenic | 30.0% | |
| ! | AAAATACCTTTGGAGAAAAC+AGG | + | chr3_2:7369278-7369297 | None:intergenic | 30.0% |
| !!! | TATTTTGGTTGACAAATTCC+CGG | - | chr3_2:7369571-7369590 | Msa0393280:intron | 30.0% |
| ! | GTGTCTTAAAATAGGGTTTT+TGG | - | chr3_2:7369736-7369755 | Msa0393280:CDS | 30.0% |
| GAGTCAAATTCTCATCATTT+AGG | - | chr3_2:7369821-7369840 | Msa0393280:intron | 30.0% | |
| TAGAAAATGAAGAACCAATC+AGG | + | chr3_2:7369915-7369934 | None:intergenic | 30.0% | |
| TTCATTCCTTCTAATACCAA+AGG | + | chr3_2:7369972-7369991 | None:intergenic | 30.0% | |
| ! | TATCCAGGAACATATTGATT+TGG | - | chr3_2:7370117-7370136 | Msa0393280:intron | 30.0% |
| !! | ATCCAGGAACATATTGATTT+GGG | - | chr3_2:7370118-7370137 | Msa0393280:intron | 30.0% |
| GATAAACCACAATTGAACTT+AGG | + | chr3_2:7370271-7370290 | None:intergenic | 30.0% | |
| ! | TATGGATTTCTTTGTTGTCT+TGG | - | chr3_2:7370478-7370497 | Msa0393280:intron | 30.0% |
| TGGTTCCAAGTTAAATATGA+AGG | - | chr3_2:7370590-7370609 | Msa0393280:intron | 30.0% | |
| TCACACCTTCATATTTAACT+TGG | + | chr3_2:7370598-7370617 | None:intergenic | 30.0% | |
| !! | GTATGAATACTACTTTTGAC+TGG | - | chr3_2:7370735-7370754 | Msa0393280:intron | 30.0% |
| GAAGAGAAACGAAAGAGAAT+TGG | + | chr3_2:7368086-7368105 | None:intergenic | 35.0% | |
| !! | TCTCCACATTTTGATCTGTT+TGG | - | chr3_2:7368290-7368309 | Msa0393280:CDS | 35.0% |
| GATCCAAACAGATCAAAATG+TGG | + | chr3_2:7368296-7368315 | None:intergenic | 35.0% | |
| !! | CATTTTGATCTGTTTGGATC+TGG | - | chr3_2:7368296-7368315 | Msa0393280:CDS | 35.0% |
| CAACTTGTAAACATGCCATA+AGG | - | chr3_2:7368466-7368485 | Msa0393280:intron | 35.0% | |
| !! | ATGGATTTTTGTTTCCTTCC+GGG | + | chr3_2:7368711-7368730 | None:intergenic | 35.0% |
| !! | GATGGATTTTTGTTTCCTTC+CGG | + | chr3_2:7368712-7368731 | None:intergenic | 35.0% |
| ! | TCACTGGTATTGAGATATTG+GGG | + | chr3_2:7368743-7368762 | None:intergenic | 35.0% |
| CAATGCACAAGTCAATTCTA+TGG | + | chr3_2:7368978-7368997 | None:intergenic | 35.0% | |
| !! | AATTGACTTGTGCATTGCAT+TGG | - | chr3_2:7368981-7369000 | Msa0393280:intron | 35.0% |
| AGAAACTGTCTAATCCAATG+AGG | - | chr3_2:7369065-7369084 | Msa0393280:intron | 35.0% | |
| GAAACTGTCTAATCCAATGA+GGG | - | chr3_2:7369066-7369085 | Msa0393280:intron | 35.0% | |
| ATGTACAGAACATGTCTACT+AGG | + | chr3_2:7369396-7369415 | None:intergenic | 35.0% | |
| TGCCATGGTGTCTTAAAATA+GGG | - | chr3_2:7369729-7369748 | Msa0393280:CDS | 35.0% | |
| !!! | AACCCTATTTTAAGACACCA+TGG | + | chr3_2:7369734-7369753 | None:intergenic | 35.0% |
| ACAGTTCTTTACATGCGTAT+TGG | - | chr3_2:7369867-7369886 | Msa0393280:intron | 35.0% | |
| TACATGCGTATTGGATATCT+TGG | - | chr3_2:7369876-7369895 | Msa0393280:intron | 35.0% | |
| ACATGCGTATTGGATATCTT+GGG | - | chr3_2:7369877-7369896 | Msa0393280:intron | 35.0% | |
| TATTGTGCTTATTGACAGCT+AGG | - | chr3_2:7369933-7369952 | Msa0393280:intron | 35.0% | |
| TCCTTCTAATACCAAAGGAA+CGG | + | chr3_2:7369967-7369986 | None:intergenic | 35.0% | |
| TTCCCAAATCAATATGTTCC+TGG | + | chr3_2:7370123-7370142 | None:intergenic | 35.0% | |
| ATACCATAAATACCAGTGGA+AGG | + | chr3_2:7370461-7370480 | None:intergenic | 35.0% | |
| TTCCACTGGTATTTATGGTA+TGG | - | chr3_2:7370460-7370479 | Msa0393280:intron | 35.0% | |
| ATCCATACCATAAATACCAG+TGG | + | chr3_2:7370465-7370484 | None:intergenic | 35.0% | |
| !! | TTTAACTTGGAACCACTTCA+TGG | + | chr3_2:7370585-7370604 | None:intergenic | 35.0% |
| AACTCACTAAACAATTGCCT+GGG | + | chr3_2:7370633-7370652 | None:intergenic | 35.0% | |
| AGTAGCTTAACTTTCTGCAT+TGG | - | chr3_2:7370713-7370732 | Msa0393280:intron | 35.0% | |
| TCGGGATATGGTGTATACTA+GGG | + | chr3_2:7367986-7368005 | None:intergenic | 40.0% | |
| CTGACAGAAACGAAAGAGAA+CGG | + | chr3_2:7368031-7368050 | None:intergenic | 40.0% | |
| TGATCTGTTTGGATCTGGTT+TGG | - | chr3_2:7368301-7368320 | Msa0393280:CDS | 40.0% | |
| !! | TTGGATCTGGTTTGGTATCT+AGG | - | chr3_2:7368309-7368328 | Msa0393280:CDS | 40.0% |
| TTTGGTATCTAGGCCATGTT+TGG | - | chr3_2:7368319-7368338 | Msa0393280:CDS | 40.0% | |
| AGTAAACCATCATTCAGTCC+CGG | - | chr3_2:7368690-7368709 | Msa0393280:CDS | 40.0% | |
| TTAGGGACTAAATAGGTGAG+AGG | - | chr3_2:7368819-7368838 | Msa0393280:CDS | 40.0% | |
| GATAGTAAACAAGCAGACGT+TGG | + | chr3_2:7369007-7369026 | None:intergenic | 40.0% | |
| ! | TGCACTTTGATTTCCCTCAT+TGG | + | chr3_2:7369082-7369101 | None:intergenic | 40.0% |
| TAGGTTCTTGAACAGCTAAG+TGG | - | chr3_2:7369245-7369264 | Msa0393280:intron | 40.0% | |
| ! | CAAACACCTGTTTTCTCCAA+AGG | - | chr3_2:7369269-7369288 | Msa0393280:intron | 40.0% |
| AAAGTGGCCATAGAAGATTG+CGG | - | chr3_2:7369681-7369700 | Msa0393280:CDS | 40.0% | |
| !!! | GTGGAGTTTTTTATTGCCAC+CGG | - | chr3_2:7369703-7369722 | Msa0393280:CDS | 40.0% |
| CTGCCATGGTGTCTTAAAAT+AGG | - | chr3_2:7369728-7369747 | Msa0393280:CDS | 40.0% | |
| GGTTGTGTTTGTATCCTGAT+TGG | - | chr3_2:7369898-7369917 | Msa0393280:intron | 40.0% | |
| CTTATTGACAGCTAGGTACA+CGG | - | chr3_2:7369940-7369959 | Msa0393280:intron | 40.0% | |
| TCCGTTCCTTTGGTATTAGA+AGG | - | chr3_2:7369963-7369982 | Msa0393280:intron | 40.0% | |
| TCAAGGAATATGAGCTGTTG+AGG | - | chr3_2:7370059-7370078 | Msa0393280:intron | 40.0% | |
| AGGAGAAACTTCAGTGATAC+CGG | - | chr3_2:7370079-7370098 | Msa0393280:intron | 40.0% | |
| ! | TTCAGTGATACCGGATGTTT+TGG | - | chr3_2:7370088-7370107 | Msa0393280:intron | 40.0% |
| GCTCTACCTAAGTTCAATTG+TGG | - | chr3_2:7370262-7370281 | Msa0393280:intron | 40.0% | |
| GATCCTTCCACTGGTATTTA+TGG | - | chr3_2:7370455-7370474 | Msa0393280:intron | 40.0% | |
| AATCCAACATCGTGTCACAA+AGG | - | chr3_2:7370553-7370572 | Msa0393280:intron | 40.0% | |
| GAACTCACTAAACAATTGCC+TGG | + | chr3_2:7370634-7370653 | None:intergenic | 40.0% | |
| GGCAATTGTTTAGTGAGTTC+AGG | - | chr3_2:7370634-7370653 | Msa0393280:intron | 40.0% | |
| CTCGGGATATGGTGTATACT+AGG | + | chr3_2:7367987-7368006 | None:intergenic | 45.0% | |
| CTTGTACTCAACATCTCCGT+CGG | - | chr3_2:7369106-7369125 | Msa0393280:intron | 45.0% | |
| AGAAAATACCTTAGCGGCTC+TGG | + | chr3_2:7369152-7369171 | None:intergenic | 45.0% | |
| AACTCCACCGCAATCTTCTA+TGG | + | chr3_2:7369691-7369710 | None:intergenic | 45.0% | |
| TTAAGACACCATGGCAGAAC+CGG | + | chr3_2:7369725-7369744 | None:intergenic | 45.0% | |
| !!! | GATACCGGATGTTTTGGCTT+CGG | - | chr3_2:7370094-7370113 | Msa0393280:intron | 45.0% |
| GATACCGAAGCCAAAACATC+CGG | + | chr3_2:7370101-7370120 | None:intergenic | 45.0% | |
| !!! | ATGTTTTGGCTTCGGTATCC+AGG | - | chr3_2:7370102-7370121 | Msa0393280:intron | 45.0% |
| TTCAGGTATGATCCTTCCAC+TGG | - | chr3_2:7370446-7370465 | Msa0393280:intron | 45.0% | |
| CATCCTTTGTGACACGATGT+TGG | + | chr3_2:7370559-7370578 | None:intergenic | 45.0% | |
| CAAAGGATGATGCCATGAAG+TGG | - | chr3_2:7370570-7370589 | Msa0393280:intron | 45.0% | |
| TGTGATCCTAAACAAGTCCC+AGG | - | chr3_2:7370613-7370632 | Msa0393280:intron | 45.0% | |
| ! | CAATTGCCTGGGACTTGTTT+AGG | + | chr3_2:7370622-7370641 | None:intergenic | 45.0% |
| !!! | ATATTTTTTTTTTATAGTTT+AGG | - | chr3_2:7368801-7368820 | Msa0393280:CDS | 5.0% |
| !!! | TATTTTTTTTTTATAGTTTA+GGG | - | chr3_2:7368802-7368821 | Msa0393280:CDS | 5.0% |
| !! | ATAAAAATTAAATAATAGAA+AGG | + | chr3_2:7369330-7369349 | None:intergenic | 5.0% |
| !!! | TTTTATTATATTTTTTTTTC+TGG | - | chr3_2:7369420-7369439 | Msa0393280:intron | 5.0% |
| AGACGGTAACACTCGGGATA+TGG | + | chr3_2:7367998-7368017 | None:intergenic | 50.0% | |
| AGAGGAAGACGGTAACACTC+GGG | + | chr3_2:7368004-7368023 | None:intergenic | 50.0% | |
| GAGAGGAAGACGGTAACACT+CGG | + | chr3_2:7368005-7368024 | None:intergenic | 50.0% | |
| AACCATCATTCAGTCCCGGA+AGG | - | chr3_2:7368694-7368713 | Msa0393280:CDS | 50.0% | |
| TTCCTTCCGGGACTGAATGA+TGG | + | chr3_2:7368699-7368718 | None:intergenic | 50.0% | |
| AACATCTCCGTCGGTGAAAG+TGG | - | chr3_2:7369115-7369134 | Msa0393280:intron | 50.0% | |
| ACGATCTCCACTTTCACCGA+CGG | + | chr3_2:7369125-7369144 | None:intergenic | 50.0% | |
| !! | TGCAACGGATTGCAGAAGAC+GGG | + | chr3_2:7369775-7369794 | None:intergenic | 50.0% |
| !! | GTGCAACGGATTGCAGAAGA+CGG | + | chr3_2:7369776-7369795 | None:intergenic | 50.0% |
| GCATGCTACGTCACTGTTAG+AGG | - | chr3_2:7369998-7370017 | Msa0393280:intron | 50.0% | |
| ! | CGACAAGGCAATGCAGCTTT+TGG | - | chr3_2:7370021-7370040 | Msa0393280:intron | 50.0% |
| !! | GCAATGCAGCTTTTGGAGAG+CGG | - | chr3_2:7370028-7370047 | Msa0393280:intron | 50.0% |
| !! | GCTTTTGGAGAGCGGTTTGA+AGG | - | chr3_2:7370036-7370055 | Msa0393280:intron | 50.0% |
| GTGGCCATAGAAGATTGCGG+TGG | - | chr3_2:7369684-7369703 | Msa0393280:CDS | 55.0% | |
| !! | TATTGCCACCGGTTCTGCCA+TGG | - | chr3_2:7369714-7369733 | Msa0393280:CDS | 55.0% |
| !!! | GGGTTTTTGGCCTTTGCCCA+TGG | - | chr3_2:7369749-7369768 | Msa0393280:intron | 55.0% |
| GATTGCAGAAGACGGGCCAT+GGG | + | chr3_2:7369768-7369787 | None:intergenic | 55.0% | |
| AGGTACACGGTCCGTTCCTT+TGG | - | chr3_2:7369953-7369972 | Msa0393280:intron | 55.0% | |
| CGTCACTGTTAGAGGCGACA+AGG | - | chr3_2:7370006-7370025 | Msa0393280:intron | 55.0% | |
| GGAGAGCGGTTTGAAGGTCA+AGG | - | chr3_2:7370042-7370061 | Msa0393280:intron | 55.0% | |
| ! | TTTGTTGTCTTGGAGCGCCC+TGG | - | chr3_2:7370488-7370507 | Msa0393280:intron | 55.0% |
| GACGTCCCACACGATAACCA+GGG | + | chr3_2:7370508-7370527 | None:intergenic | 55.0% | |
| CGTAGGTGCAAGGCAAGAGT+TGG | - | chr3_2:7370530-7370549 | Msa0393280:intron | 55.0% | |
| AGAACGGCGCGAGAGGAAGA+CGG | + | chr3_2:7368015-7368034 | None:intergenic | 60.0% | |
| ACGAAAGAGAACGGCGCGAG+AGG | + | chr3_2:7368022-7368041 | None:intergenic | 60.0% | |
| TCGTCTCACCAGAGCCGCTA+AGG | - | chr3_2:7369141-7369160 | Msa0393280:intron | 60.0% | |
| AGACACCATGGCAGAACCGG+TGG | + | chr3_2:7369722-7369741 | None:intergenic | 60.0% | |
| AGAAGACGGGCCATGGGCAA+AGG | + | chr3_2:7369762-7369781 | None:intergenic | 60.0% | |
| GGATTGCAGAAGACGGGCCA+TGG | + | chr3_2:7369769-7369788 | None:intergenic | 60.0% | |
| GAGCGCCCTGGTTATCGTGT+GGG | - | chr3_2:7370500-7370519 | Msa0393280:intron | 60.0% | |
| CGACGTCCCACACGATAACC+AGG | + | chr3_2:7370509-7370528 | None:intergenic | 60.0% | |
| ATCGTGTGGGACGTCGTCGT+AGG | - | chr3_2:7370513-7370532 | Msa0393280:intron | 60.0% | |
| ! | GGAGCGCCCTGGTTATCGTG+TGG | - | chr3_2:7370499-7370518 | Msa0393280:intron | 65.0% |
| GGGACGTCGTCGTAGGTGCA+AGG | - | chr3_2:7370520-7370539 | Msa0393280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 7367940 | 7370878 | 7367940 | ID=Msa0393280;Name=Msa0393280 |
| chr3_2 | mRNA | 7367940 | 7370878 | 7367940 | ID=Msa0393280-mRNA-1;Parent=Msa0393280;Name=Msa0393280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=134|1|1|1|0.75|0.8|5|232|181 |
| chr3_2 | exon | 7367940 | 7368367 | 7367940 | ID=Msa0393280-mRNA-1:exon:1801;Parent=Msa0393280-mRNA-1 |
| chr3_2 | exon | 7368672 | 7368867 | 7368672 | ID=Msa0393280-mRNA-1:exon:1800;Parent=Msa0393280-mRNA-1 |
| chr3_2 | exon | 7369528 | 7369570 | 7369528 | ID=Msa0393280-mRNA-1:exon:1799;Parent=Msa0393280-mRNA-1 |
| chr3_2 | exon | 7369656 | 7369763 | 7369656 | ID=Msa0393280-mRNA-1:exon:1798;Parent=Msa0393280-mRNA-1 |
| chr3_2 | exon | 7370742 | 7370878 | 7370742 | ID=Msa0393280-mRNA-1:exon:1797;Parent=Msa0393280-mRNA-1 |
| chr3_2 | five_prime_UTR | 7370745 | 7370878 | 7370745 | ID=Msa0393280-mRNA-1:five_prime_utr;Parent=Msa0393280-mRNA-1 |
| chr3_2 | CDS | 7370742 | 7370744 | 7370742 | ID=Msa0393280-mRNA-1:cds;Parent=Msa0393280-mRNA-1 |
| chr3_2 | CDS | 7369656 | 7369763 | 7369656 | ID=Msa0393280-mRNA-1:cds;Parent=Msa0393280-mRNA-1 |
| chr3_2 | CDS | 7369528 | 7369570 | 7369528 | ID=Msa0393280-mRNA-1:cds;Parent=Msa0393280-mRNA-1 |
| chr3_2 | CDS | 7368672 | 7368867 | 7368672 | ID=Msa0393280-mRNA-1:cds;Parent=Msa0393280-mRNA-1 |
| chr3_2 | CDS | 7368172 | 7368367 | 7368172 | ID=Msa0393280-mRNA-1:cds;Parent=Msa0393280-mRNA-1 |
| chr3_2 | three_prime_UTR | 7367940 | 7368171 | 7367940 | ID=Msa0393280-mRNA-1:three_prime_utr;Parent=Msa0393280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
