AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374710 MtrunA17_Chr8g0347511 99.541 218 1 0 1 218 1 218 5.41e-154 425
Msa1374710 MtrunA17_Chr8g0376831 52.344 128 59 2 1 127 1 127 1.02e-40 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374710 AT5G12230.1 63.229 223 75 3 1 218 1 221 3.73e-61 191
Msa1374710 AT5G19480.3 60.000 215 77 3 1 214 1 207 2.31e-56 178
Msa1374710 AT5G19480.2 60.000 215 77 3 1 214 1 207 2.31e-56 178
Msa1374710 AT5G19480.1 60.000 215 77 3 1 214 1 207 2.31e-56 178
Msa1374710 AT5G19480.4 60.000 215 77 3 1 214 1 207 2.31e-56 178

Find 82 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTAATTTGTAAACTATA+TGG 0.188175 tig0019561:+172714 Msa1374710:three_prime_UTR
TTCCACCCGTCAGTAATATT+AGG 0.221664 tig0019561:-172754 None:intergenic
TTTCTTCTTCTTTCACTGTT+TGG 0.231758 tig0019561:+166193 Msa1374710:five_prime_UTR
CATCCGCGATGTTAAATAAA+TGG 0.263943 tig0019561:-172681 None:intergenic
TCCACCCGTCAGTAATATTA+GGG 0.318124 tig0019561:-172753 None:intergenic
GGATAACTGAAATAACTATT+GGG 0.326736 tig0019561:+172624 Msa1374710:three_prime_UTR
AAGAAGAAGAAAGGGATTAA+AGG 0.326969 tig0019561:-166182 None:intergenic
AGGATAACTGAAATAACTAT+TGG 0.351103 tig0019561:+172623 Msa1374710:three_prime_UTR
AATAACCGACAGCTTTAATC+AGG 0.352935 tig0019561:+167816 Msa1374710:intron
TGGGAGCTGTTTCCCTTAGT+TGG 0.360962 tig0019561:-168593 None:intergenic
ATCGCGGATGGATCTGTATA+TGG 0.371320 tig0019561:+172694 Msa1374710:three_prime_UTR
AGAAGAAGAAAGGGATTAAA+GGG 0.373158 tig0019561:-166181 None:intergenic
GTGTCAATTTGAAGGTGATT+TGG 0.382763 tig0019561:+166439 Msa1374710:five_prime_UTR
ATCCATGATTCAATCTTTCA+TGG 0.391592 tig0019561:-167856 None:intergenic
GGTTAATTTGTAAACTATAT+GGG 0.393345 tig0019561:+172715 Msa1374710:three_prime_UTR
AATCTTTGTGTTTGTTCCTT+CGG 0.399112 tig0019561:-166104 None:intergenic
AGCTCAAGAATTGATGAGTT+GGG 0.406971 tig0019561:+169689 Msa1374710:CDS
AGCATAAGAAGCACAAAGAC+AGG 0.416670 tig0019561:+168841 Msa1374710:CDS
AGTGCGGTATTAATTTGAAA+TGG 0.421690 tig0019561:-168377 None:intergenic
AAAAGGAGATGGCATGCAAT+TGG 0.425102 tig0019561:+168485 Msa1374710:CDS
TCAAGGAGGCTTTCCAACTA+AGG 0.441770 tig0019561:+168580 Msa1374710:CDS
AAAGGAATACCAACAATTGC+AGG 0.443447 tig0019561:+168786 Msa1374710:CDS
CTTTGTTGAGGTTTCAGTGT+TGG 0.445650 tig0019561:-166130 None:intergenic
GCGATGTTAAATAAATGGTA+TGG 0.449657 tig0019561:-172676 None:intergenic
AAACAGTGAAAGAAGAAGAA+AGG 0.465344 tig0019561:-166191 None:intergenic
TTTCTTTGAGTGATCAGCAC+TGG 0.476818 tig0019561:-168970 None:intergenic
TCAAGAAATCTGAAAATGTC+AGG 0.479687 tig0019561:-169806 None:intergenic
TTTCCCTAATAGGCGGAGAA+AGG 0.487140 tig0019561:+168768 Msa1374710:intron
ACAGGGATAAGGACAAGGAC+AGG 0.491569 tig0019561:+168859 Msa1374710:CDS
AACAGTGAAAGAAGAAGAAA+GGG 0.492849 tig0019561:-166190 None:intergenic
AATTCACCTGATGGTGGAAA+AGG 0.493016 tig0019561:+172374 Msa1374710:three_prime_UTR
CACTACCTGCACAGTGTAGT+AGG 0.493509 tig0019561:+168447 Msa1374710:CDS
GAGCTCAAGAATTGATGAGT+TGG 0.493987 tig0019561:+169688 Msa1374710:CDS
CATTTATTTAACATCGCGGA+TGG 0.494536 tig0019561:+172682 Msa1374710:three_prime_UTR
GGAGACACAGAAGTAAGAAA+AGG 0.503306 tig0019561:+168468 Msa1374710:CDS
CAATTTGAAGGTGATTTGGT+GGG 0.504611 tig0019561:+166443 Msa1374710:five_prime_UTR
CTCAAAGAAACACCATGAAA+AGG 0.506144 tig0019561:+168983 Msa1374710:CDS
AACCATGAAAGATTGAATCA+TGG 0.511783 tig0019561:+167854 Msa1374710:exon
TTGTGTTTGTGTCAATTTGA+AGG 0.514281 tig0019561:+166431 Msa1374710:five_prime_UTR
ATCATGATAATCTTATAGTC+AGG 0.516918 tig0019561:-172347 None:intergenic
TCCGCGATTGACACAGGAAG+CGG 0.522644 tig0019561:-168420 None:intergenic
TAAAGGAAAGATCTTTGTTG+AGG 0.528082 tig0019561:-166142 None:intergenic
TCGGATACAGCCTTTCGACT+TGG 0.534768 tig0019561:+168551 Msa1374710:CDS
TCAATTTGAAGGTGATTTGG+TGG 0.537156 tig0019561:+166442 Msa1374710:five_prime_UTR
CGATGTTAAATAAATGGTAT+GGG 0.542155 tig0019561:-172675 None:intergenic
GAAGCACAAAGACAGGGATA+AGG 0.543181 tig0019561:+168848 Msa1374710:CDS
CACGCCCTAATATTACTGAC+GGG 0.543769 tig0019561:+172749 Msa1374710:three_prime_UTR
TGACTATAAGATTATCATGA+TGG 0.546672 tig0019561:+172349 Msa1374710:three_prime_UTR
CAAATGACAACAACCAATTG+AGG 0.561634 tig0019561:-169764 None:intergenic
AATTTGTAAACTATATGGGA+TGG 0.568096 tig0019561:+172719 Msa1374710:three_prime_UTR
CAAGGAGGCTTTCCAACTAA+GGG 0.568109 tig0019561:+168581 Msa1374710:CDS
GCTCAAGAATTGATGAGTTG+GGG 0.569389 tig0019561:+169690 Msa1374710:CDS
TCAGGACCGAGGGAGTTGAC+AGG 0.569665 tig0019561:+168336 Msa1374710:intron
TCTTACAGCAGGCAAATCGA+TGG 0.570777 tig0019561:-168613 None:intergenic
CTGATGGTGGAAAAGGAAGC+AGG 0.572261 tig0019561:+172381 Msa1374710:three_prime_UTR
TCACGCCCTAATATTACTGA+CGG 0.572509 tig0019561:+172748 Msa1374710:three_prime_UTR
TTTCGACTTGGATATACTCA+AGG 0.572941 tig0019561:+168563 Msa1374710:CDS
CTTACAGCAGGCAAATCGAT+GGG 0.583764 tig0019561:-168612 None:intergenic
TGTGTGTCCGCGATTGACAC+AGG 0.584301 tig0019561:-168426 None:intergenic
GATAACTGAAATAACTATTG+GGG 0.586388 tig0019561:+172625 Msa1374710:three_prime_UTR
ACAGCACCTGTCAACTCCCT+CGG 0.592323 tig0019561:-168342 None:intergenic
TGTCTCCTACTACACTGTGC+AGG 0.593991 tig0019561:-168452 None:intergenic
TTGTTGTCATTTGTATGTGA+AGG 0.602533 tig0019561:+169774 Msa1374710:three_prime_UTR
GCATAAGAAGCACAAAGACA+GGG 0.602938 tig0019561:+168842 Msa1374710:CDS
ACAGAAGTAAGAAAAGGAGA+TGG 0.606393 tig0019561:+168474 Msa1374710:CDS
GAGGGAGTTGACAGGTGCTG+TGG 0.611611 tig0019561:+168344 Msa1374710:CDS
GATTGAATCATGGATCCTGA+AGG 0.613845 tig0019561:+167864 Msa1374710:exon
CAAAGACAGGGATAAGGACA+AGG 0.620436 tig0019561:+168854 Msa1374710:CDS
GCCGCTTCCTGTGTCAATCG+CGG 0.625354 tig0019561:+168419 Msa1374710:CDS
CAGGGATAAGGACAAGGACA+GGG 0.626401 tig0019561:+168860 Msa1374710:CDS
CAGAAGCAAAGACAAAGACA+AGG 0.629036 tig0019561:+168914 Msa1374710:CDS
CGACTTGGATATACTCAAGG+AGG 0.629284 tig0019561:+168566 Msa1374710:CDS
GCCCTAATATTACTGACGGG+TGG 0.644035 tig0019561:+172752 Msa1374710:three_prime_UTR
TCTCAAGAGAGACAAGTGCT+CGG 0.651092 tig0019561:+168532 Msa1374710:CDS
TTGAGTATATCCAAGTCGAA+AGG 0.652260 tig0019561:-168561 None:intergenic
TTTCAGAAGAGGAAGCATGA+CGG 0.652327 tig0019561:+169473 Msa1374710:intron
ATGGTGAATTCACCTGATGG+TGG 0.663661 tig0019561:+172368 Msa1374710:three_prime_UTR
CTCAAGAATTGATGAGTTGG+GGG 0.664098 tig0019561:+169691 Msa1374710:CDS
GAAGCACAAACATCGTCACA+AGG 0.684990 tig0019561:+168890 Msa1374710:CDS
ATACCATTTATTTAACATCG+CGG 0.702245 tig0019561:+172678 Msa1374710:three_prime_UTR
ATGATGGTGAATTCACCTGA+TGG 0.706691 tig0019561:+172365 Msa1374710:three_prime_UTR
ACAATCACGAGTACTACCGA+AGG 0.714721 tig0019561:+166088 Msa1374710:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTCAAATTATTAC+CGG + tig0019561:167216-167235 Msa1374710:intron 10.0%
!!! AATGATTTATATAATTTTGT+TGG + tig0019561:167705-167724 Msa1374710:intron 10.0%
!!! AATAAAGATTTTATAGAATT+AGG - tig0019561:167943-167962 None:intergenic 10.0%
!! AAAGAAAAAATATATAATCA+CGG - tig0019561:170374-170393 None:intergenic 10.0%
!! TAAAGAAAAAATAATCATTT+AGG - tig0019561:171418-171437 None:intergenic 10.0%
!! AATAAATTAAATATATGTAG+CGG + tig0019561:171705-171724 Msa1374710:intron 10.0%
!! AAATAATTATAATAATTTGG+GGG - tig0019561:172119-172138 None:intergenic 10.0%
!! GAAATAATTATAATAATTTG+GGG - tig0019561:172120-172139 None:intergenic 10.0%
!! GTGAAATAATTATAATAATT+TGG - tig0019561:172122-172141 None:intergenic 10.0%
!! TTATGTATTCATTGAAAATT+TGG - tig0019561:166276-166295 None:intergenic 15.0%
!! GAACATTTACAAAATTATTA+GGG - tig0019561:167786-167805 None:intergenic 15.0%
!! AGAACATTTACAAAATTATT+AGG - tig0019561:167787-167806 None:intergenic 15.0%
!!! TTAAATTTTTTGGAATTGAA+TGG + tig0019561:168138-168157 Msa1374710:intron 15.0%
!! TCAGAAAAATTTAAAAATTG+TGG - tig0019561:169850-169869 None:intergenic 15.0%
!! TTATGATCAATATAAAATGT+TGG + tig0019561:171267-171286 Msa1374710:intron 15.0%
!! TTATTATAATTATTTCACTC+TGG + tig0019561:172124-172143 Msa1374710:intron 15.0%
!! TATTATAATTATTTCACTCT+GGG + tig0019561:172125-172144 Msa1374710:intron 15.0%
!! GTTCTCACAAAAATATATAA+AGG - tig0019561:166162-166181 None:intergenic 20.0%
!! AGTCAAGAATAACAATAAAA+AGG - tig0019561:166307-166326 None:intergenic 20.0%
!!! TTTTGAAGTTGGAATTTTTT+AGG + tig0019561:166527-166546 Msa1374710:intron 20.0%
!!! TTTGAAGTTGGAATTTTTTA+GGG + tig0019561:166528-166547 Msa1374710:intron 20.0%
!!! TATTAATGTGAAGAAGATTT+TGG + tig0019561:166576-166595 Msa1374710:intron 20.0%
!!! ATTAATGTGAAGAAGATTTT+GGG + tig0019561:166577-166596 Msa1374710:intron 20.0%
!!! TGTTAATTTTTTTTGAACGT+TGG + tig0019561:166661-166680 Msa1374710:intron 20.0%
!! TGAATATTTAACAATCTTCA+AGG + tig0019561:166687-166706 Msa1374710:intron 20.0%
!!! AGAATGTTTTTTATTGTCTA+TGG + tig0019561:167297-167316 Msa1374710:intron 20.0%
!!! TTTTATTGTCTATGGTTTTT+TGG + tig0019561:167305-167324 Msa1374710:intron 20.0%
!! TATTTCAATTTCTCGAAATA+TGG + tig0019561:167329-167348 Msa1374710:intron 20.0%
!!! AGTTAGTTTGTTTAAGTTTT+GGG + tig0019561:167580-167599 Msa1374710:intron 20.0%
!!! TTATCACCTGTTAAATTTTT+TGG + tig0019561:168128-168147 Msa1374710:intron 20.0%
!! TCAATTCCAAAAAATTTAAC+AGG - tig0019561:168137-168156 None:intergenic 20.0%
!!! TATTGTGCAAACTTTAAAAA+GGG - tig0019561:168230-168249 None:intergenic 20.0%
!!! TTTGAACAAACATCTATTTT+CGG + tig0019561:169340-169359 Msa1374710:intron 20.0%
!!! ATTCTTTTTTGGAGTTTTAA+TGG + tig0019561:169890-169909 Msa1374710:intron 20.0%
!!! TTCTTTTTTGGAGTTTTAAT+GGG + tig0019561:169891-169910 Msa1374710:intron 20.0%
!! TTGCAAATAAAAGCAATTAA+GGG - tig0019561:169920-169939 None:intergenic 20.0%
!! TTTGCAAATAAAAGCAATTA+AGG - tig0019561:169921-169940 None:intergenic 20.0%
!! CTTATAACTAGAAATCAAAA+GGG - tig0019561:169959-169978 None:intergenic 20.0%
!! TCTTATAACTAGAAATCAAA+AGG - tig0019561:169960-169979 None:intergenic 20.0%
!!! CAATCCATTCTTTTATTTAT+TGG - tig0019561:170540-170559 None:intergenic 20.0%
!!! TCCTATATTTTTTACATTAG+CGG + tig0019561:171736-171755 Msa1374710:intron 20.0%
!!! TGGTTAATTTGTAAACTATA+TGG + tig0019561:172714-172733 Msa1374710:three_prime_UTR 20.0%
!!! GGTTAATTTGTAAACTATAT+GGG + tig0019561:172715-172734 Msa1374710:three_prime_UTR 20.0%
! TTTACACACTATATCTATCA+TGG + tig0019561:166242-166261 Msa1374710:intron 25.0%
! TTACACACTATATCTATCAT+GGG + tig0019561:166243-166262 Msa1374710:intron 25.0%
! ATAAGCCAAAATCATCAATA+GGG - tig0019561:166331-166350 None:intergenic 25.0%
! AATAAGCCAAAATCATCAAT+AGG - tig0019561:166332-166351 None:intergenic 25.0%
!!! TTTTGGCTTATTTTGATGAA+AGG + tig0019561:166340-166359 Msa1374710:intron 25.0%
!! CTTTCGAAGAAATTTTTGTT+GGG + tig0019561:166379-166398 Msa1374710:five_prime_UTR 25.0%
!! TTTCGAAGAAATTTTTGTTG+GGG + tig0019561:166380-166399 Msa1374710:five_prime_UTR 25.0%
!!! GTTTTGATTGTTTTTGAAGT+TGG + tig0019561:166516-166535 Msa1374710:intron 25.0%
!! ATTAACAGCTTTTCAAAAAG+TGG - tig0019561:166648-166667 None:intergenic 25.0%
! ATATTTAACAATCTTCAAGG+TGG + tig0019561:166690-166709 Msa1374710:intron 25.0%
!!! TTCAGTTTTGAAAAGAAAAG+GGG - tig0019561:166820-166839 None:intergenic 25.0%
!!! GTTCAGTTTTGAAAAGAAAA+GGG - tig0019561:166821-166840 None:intergenic 25.0%
! TCAGTTTCATAAAATCAACA+GGG - tig0019561:166862-166881 None:intergenic 25.0%
! TTCAGTTTCATAAAATCAAC+AGG - tig0019561:166863-166882 None:intergenic 25.0%
! TTACAATCTAGATCATCTAA+TGG + tig0019561:166893-166912 Msa1374710:intron 25.0%
! ATGCTTCTCTTGATATAAAT+TGG + tig0019561:166945-166964 Msa1374710:intron 25.0%
! AACGTATCAACTGTATTATT+TGG + tig0019561:167069-167088 Msa1374710:intron 25.0%
! ACGTATCAACTGTATTATTT+GGG + tig0019561:167070-167089 Msa1374710:intron 25.0%
! AATGATGTGAATGAATTCTA+TGG + tig0019561:167360-167379 Msa1374710:intron 25.0%
!!! CATGGATTAATATTTTCTGT+TGG + tig0019561:167416-167435 Msa1374710:intron 25.0%
! CAAAACTTAAACAAACTAAC+TGG - tig0019561:167581-167600 None:intergenic 25.0%
!!! CAGTTAGTTTGTTTAAGTTT+TGG + tig0019561:167579-167598 Msa1374710:intron 25.0%
!!! GTTAGTTTGTTTAAGTTTTG+GGG + tig0019561:167581-167600 Msa1374710:intron 25.0%
!!! ATTGTCATGGTTTTTTGAAA+TGG + tig0019561:167636-167655 Msa1374710:intron 25.0%
! TTCTTTACCGTAATTTAAGA+GGG + tig0019561:167669-167688 Msa1374710:intron 25.0%
!! GACAAATGATGGTTTTTATA+TGG + tig0019561:167737-167756 Msa1374710:intron 25.0%
! GTTCTGATTTCATATGTTTA+TGG + tig0019561:167996-168015 Msa1374710:intron 25.0%
! GTTATCTAATTGACAATACT+TGG + tig0019561:168033-168052 Msa1374710:intron 25.0%
!! ATTGTGCAAACTTTAAAAAG+GGG - tig0019561:168229-168248 None:intergenic 25.0%
!! GTATTGTGCAAACTTTAAAA+AGG - tig0019561:168231-168250 None:intergenic 25.0%
! TAATTCTTGCTGAAATCATT+TGG + tig0019561:168669-168688 Msa1374710:intron 25.0%
!! AAATTTCTTCAACCTTTTCA+TGG - tig0019561:168998-169017 None:intergenic 25.0%
! GATATAGTGATGTTAAATAG+CGG + tig0019561:169151-169170 Msa1374710:intron 25.0%
! CATAATATTCTGTGCTAAAT+AGG - tig0019561:169276-169295 None:intergenic 25.0%
! AGATATTGAGCAAAAGTAAA+AGG - tig0019561:169454-169473 None:intergenic 25.0%
!!! CTATGTACTTCATTCTTTTT+TGG + tig0019561:169879-169898 Msa1374710:intron 25.0%
!!! TCTTTTTTGGAGTTTTAATG+GGG + tig0019561:169892-169911 Msa1374710:intron 25.0%
! TCAATTTCAAATGTACTTGT+TGG + tig0019561:170218-170237 Msa1374710:intron 25.0%
! CAATTTCAAATGTACTTGTT+GGG + tig0019561:170219-170238 Msa1374710:intron 25.0%
!! AATTTCAAATGTACTTGTTG+GGG + tig0019561:170220-170239 Msa1374710:intron 25.0%
! GTTGCCAATAAATAAAAGAA+TGG + tig0019561:170533-170552 Msa1374710:intron 25.0%
! AGAAAATATTGTGAGAGAAA+GGG + tig0019561:170841-170860 Msa1374710:intron 25.0%
!! TTATTTTCTTCAGTAACTCA+AGG - tig0019561:170934-170953 None:intergenic 25.0%
!!! AATAAGTTTTTGTTGTACTG+AGG + tig0019561:171147-171166 Msa1374710:intron 25.0%
! TATATATAAGAGGGATTTAG+AGG + tig0019561:171208-171227 Msa1374710:intron 25.0%
! ATATATAAGAGGGATTTAGA+GGG + tig0019561:171209-171228 Msa1374710:intron 25.0%
!! GTTGTCATTTAAGAGAATTA+AGG + tig0019561:171236-171255 Msa1374710:intron 25.0%
! TTAAGAGAATTAAGGTCTTT+AGG + tig0019561:171244-171263 Msa1374710:intron 25.0%
!! AAAATAATCATTTAGGACAC+CGG - tig0019561:171411-171430 None:intergenic 25.0%
! ATATAATCAACTATAATGCC+CGG - tig0019561:171543-171562 None:intergenic 25.0%
! ACCGCTAATGTAAAAAATAT+AGG - tig0019561:171740-171759 None:intergenic 25.0%
! AAAATAGATTGCAAAACTTC+CGG - tig0019561:171933-171952 None:intergenic 25.0%
!! CAATCTATTTTGTAGTCAAA+AGG + tig0019561:171942-171961 Msa1374710:intron 25.0%
! ATTATGCTGTGATAAAATAC+CGG + tig0019561:172077-172096 Msa1374710:intron 25.0%
! ATCATGATAATCTTATAGTC+AGG - tig0019561:172350-172369 None:intergenic 25.0%
! TGACTATAAGATTATCATGA+TGG + tig0019561:172349-172368 Msa1374710:three_prime_UTR 25.0%
! AGGATAACTGAAATAACTAT+TGG + tig0019561:172623-172642 Msa1374710:three_prime_UTR 25.0%
! GGATAACTGAAATAACTATT+GGG + tig0019561:172624-172643 Msa1374710:three_prime_UTR 25.0%
! GATAACTGAAATAACTATTG+GGG + tig0019561:172625-172644 Msa1374710:three_prime_UTR 25.0%
! CGATGTTAAATAAATGGTAT+GGG - tig0019561:172678-172697 None:intergenic 25.0%
! ATACCATTTATTTAACATCG+CGG + tig0019561:172678-172697 Msa1374710:three_prime_UTR 25.0%
! AATTTGTAAACTATATGGGA+TGG + tig0019561:172719-172738 Msa1374710:three_prime_UTR 25.0%
AATCTTTGTGTTTGTTCCTT+CGG - tig0019561:166107-166126 None:intergenic 30.0%
TAAAGGAAAGATCTTTGTTG+AGG - tig0019561:166145-166164 None:intergenic 30.0%
AGAAGAAGAAAGGGATTAAA+GGG - tig0019561:166184-166203 None:intergenic 30.0%
AAGAAGAAGAAAGGGATTAA+AGG - tig0019561:166185-166204 None:intergenic 30.0%
AACAGTGAAAGAAGAAGAAA+GGG - tig0019561:166193-166212 None:intergenic 30.0%
AAACAGTGAAAGAAGAAGAA+AGG - tig0019561:166194-166213 None:intergenic 30.0%
TTTCTTCTTCTTTCACTGTT+TGG + tig0019561:166193-166212 Msa1374710:five_prime_UTR 30.0%
! GCTTTCGAAGAAATTTTTGT+TGG + tig0019561:166378-166397 Msa1374710:intron 30.0%
TTGTGTTTGTGTCAATTTGA+AGG + tig0019561:166431-166450 Msa1374710:five_prime_UTR 30.0%
!!! AGAAGATTTTGGGTTTTTTG+TGG + tig0019561:166587-166606 Msa1374710:intron 30.0%
ACAGGATAAGAAACAATTGA+TGG + tig0019561:166721-166740 Msa1374710:intron 30.0%
!!! GGTTCAGTTTTGAAAAGAAA+AGG - tig0019561:166822-166841 None:intergenic 30.0%
TTTCACATGGATAGATACTA+TGG - tig0019561:166921-166940 None:intergenic 30.0%
!! TTTTTGTTATGCTAGTGTGT+TGG + tig0019561:167027-167046 Msa1374710:intron 30.0%
TTGAATGTAATCACATGTGT+CGG - tig0019561:167192-167211 None:intergenic 30.0%
! TGTTTGCAGATTATTAGCTT+TGG + tig0019561:167392-167411 Msa1374710:intron 30.0%
!! GTTTGCAGATTATTAGCTTT+GGG + tig0019561:167393-167412 Msa1374710:intron 30.0%
! AAAGCATTTAGCTGTACAAT+AGG + tig0019561:167529-167548 Msa1374710:intron 30.0%
AAGCATTTAGCTGTACAATA+GGG + tig0019561:167530-167549 Msa1374710:intron 30.0%
! CAAGTTAAGTGTCTTTTTGT+TGG + tig0019561:167613-167632 Msa1374710:intron 30.0%
CTCTTAAATTACGGTAAAGA+AGG - tig0019561:167670-167689 None:intergenic 30.0%
CTTCTTTACCGTAATTTAAG+AGG + tig0019561:167668-167687 Msa1374710:intron 30.0%
AACCATGAAAGATTGAATCA+TGG + tig0019561:167854-167873 Msa1374710:exon 30.0%
ATCCATGATTCAATCTTTCA+TGG - tig0019561:167859-167878 None:intergenic 30.0%
! TAGTTGTTTATTTGCCCTTT+TGG + tig0019561:168085-168104 Msa1374710:intron 30.0%
ACACAGAATGTCAAAAAACA+CGG - tig0019561:168306-168325 None:intergenic 30.0%
! AGTGCGGTATTAATTTGAAA+TGG - tig0019561:168380-168399 None:intergenic 30.0%
TTGCAGAAAAATTCATAGTG+CGG - tig0019561:168396-168415 None:intergenic 30.0%
! ACTATGAATTTTTCTGCAAG+AGG + tig0019561:168397-168416 Msa1374710:CDS 30.0%
! TTCCTTGTATTTTCCCTAAT+AGG + tig0019561:168758-168777 Msa1374710:intron 30.0%
!! TTTGATTTTCCTGCAATTGT+TGG - tig0019561:168798-168817 None:intergenic 30.0%
GACAAAAAGAAAGACAAAAG+CGG + tig0019561:168936-168955 Msa1374710:CDS 30.0%
ACAAAAAGAAAGACAAAAGC+GGG + tig0019561:168937-168956 Msa1374710:CDS 30.0%
TCAAGTAAATTTGCAATGAC+AGG - tig0019561:169072-169091 None:intergenic 30.0%
TGGACAATGATGTTAAATAC+CGG + tig0019561:169195-169214 Msa1374710:intron 30.0%
CATTTGCTCTACATACTATT+TGG + tig0019561:169396-169415 Msa1374710:intron 30.0%
GCACAAACATAAAAAGAGTA+AGG + tig0019561:169517-169536 Msa1374710:CDS 30.0%
! TTGTTGTCATTTGTATGTGA+AGG + tig0019561:169774-169793 Msa1374710:three_prime_UTR 30.0%
TCAAGAAATCTGAAAATGTC+AGG - tig0019561:169809-169828 None:intergenic 30.0%
! TGACATTTTCAGATTTCTTG+AGG + tig0019561:169808-169827 Msa1374710:three_prime_UTR 30.0%
AAGAATGAAGTACATAGTCA+TGG - tig0019561:169876-169895 None:intergenic 30.0%
ATAACTAGAAATCAAAAGGG+TGG - tig0019561:169956-169975 None:intergenic 30.0%
! TTCTCAAATATTGGCTATAG+CGG + tig0019561:170041-170060 Msa1374710:intron 30.0%
ATTTATTAGCAGCTATAACG+CGG + tig0019561:170123-170142 Msa1374710:intron 30.0%
AATCACGGTCTAAAAGAAAA+TGG - tig0019561:170359-170378 None:intergenic 30.0%
ATTCACATGTTTATCATCAC+TGG - tig0019561:170724-170743 None:intergenic 30.0%
TGATAAACATGTGAATGCAA+TGG + tig0019561:170728-170747 Msa1374710:intron 30.0%
! TTCTCTCACAATATTTTCTG+TGG - tig0019561:170840-170859 None:intergenic 30.0%
CAGAAAATATTGTGAGAGAA+AGG + tig0019561:170840-170859 Msa1374710:intron 30.0%
!! TGGATTAGCTTTACAGTATT+TGG + tig0019561:170882-170901 Msa1374710:intron 30.0%
TATATAAGAGGGATTTAGAG+GGG + tig0019561:171210-171229 Msa1374710:intron 30.0%
TATGAGTGTTATATAGGTGT+CGG - tig0019561:171465-171484 None:intergenic 30.0%
TTAAATATATGTAGCGGTGT+CGG + tig0019561:171711-171730 Msa1374710:intron 30.0%
AGATAGAATGAAAGAAGATG+AGG - tig0019561:171824-171843 None:intergenic 30.0%
! TATTGCTGTGTTTTGTAACT+TGG + tig0019561:171887-171906 Msa1374710:intron 30.0%
ACCATTATTATGCTGTGATA+AGG + tig0019561:171973-171992 Msa1374710:intron 30.0%
! AAGGCTTTGATAGAACATTA+TGG + tig0019561:171992-172011 Msa1374710:intron 30.0%
AAGTGGAAAAAGAAAGAACT+CGG + tig0019561:172226-172245 Msa1374710:intron 30.0%
AGTTCACTAGCAATTCTATA+AGG - tig0019561:172450-172469 None:intergenic 30.0%
ATAGAATTGCTAGTGAACTT+TGG + tig0019561:172451-172470 Msa1374710:intron 30.0%
!! GATCTAGAAGCTTTTTGTTT+AGG + tig0019561:172603-172622 Msa1374710:three_prime_UTR 30.0%
GCGATGTTAAATAAATGGTA+TGG - tig0019561:172679-172698 None:intergenic 30.0%
!! GACTACCCTATTGATGATTT+TGG + tig0019561:166323-166342 Msa1374710:intron 35.0%
GTGTCAATTTGAAGGTGATT+TGG + tig0019561:166439-166458 Msa1374710:five_prime_UTR 35.0%
! TCAATTTGAAGGTGATTTGG+TGG + tig0019561:166442-166461 Msa1374710:five_prime_UTR 35.0%
!! CAATTTGAAGGTGATTTGGT+GGG + tig0019561:166443-166462 Msa1374710:five_prime_UTR 35.0%
! TTGAGGATTTTTCACTCTTC+AGG + tig0019561:166477-166496 Msa1374710:five_prime_UTR 35.0%
TTCAAGGTGGAAATTGAAAC+AGG + tig0019561:166703-166722 Msa1374710:intron 35.0%
!!! AGTTTTGAAAAGAAAAGGGG+TGG - tig0019561:166817-166836 None:intergenic 35.0%
CTCTTGATATAAATTGGTGC+TGG + tig0019561:166951-166970 Msa1374710:intron 35.0%
TGATGATTTCATGTGCGATT+TGG + tig0019561:167093-167112 Msa1374710:intron 35.0%
GATGATTTCATGTGCGATTT+GGG + tig0019561:167094-167113 Msa1374710:intron 35.0%
!! TGTTTGTTTCGGTGCTTAAT+TGG + tig0019561:167271-167290 Msa1374710:intron 35.0%
!!! ATATTTTCTGTTGGCCTTAC+TGG + tig0019561:167425-167444 Msa1374710:intron 35.0%
!!! TATTTTCTGTTGGCCTTACT+GGG + tig0019561:167426-167445 Msa1374710:intron 35.0%
AAAAACAAGTGTTCCCAGTA+AGG - tig0019561:167442-167461 None:intergenic 35.0%
TGTACAGCTAAATGCTTTGT+AGG - tig0019561:167527-167546 None:intergenic 35.0%
AGCATTTAGCTGTACAATAG+GGG + tig0019561:167531-167550 Msa1374710:intron 35.0%
!!! TGTTTAAGTTTTGGGGTTTG+TGG + tig0019561:167588-167607 Msa1374710:intron 35.0%
! GTCTTTTTGTTGGATTGTCA+TGG + tig0019561:167623-167642 Msa1374710:intron 35.0%
CAAGCTACCCTCTTAAATTA+CGG - tig0019561:167679-167698 None:intergenic 35.0%
! GGTTTTCATGTGACAAATGA+TGG + tig0019561:167726-167745 Msa1374710:intron 35.0%
! TGATTAAAGCTGTCGGTTAT+TGG - tig0019561:167817-167836 None:intergenic 35.0%
! AATAACCGACAGCTTTAATC+AGG + tig0019561:167816-167835 Msa1374710:intron 35.0%
CAAAACCTGATTAAAGCTGT+CGG - tig0019561:167824-167843 None:intergenic 35.0%
!! ACAGCTTTAATCAGGTTTTG+TGG + tig0019561:167824-167843 Msa1374710:intron 35.0%
GATCCTGAAGGAAAAAAGTT+TGG + tig0019561:167876-167895 Msa1374710:CDS 35.0%
! TTGTTTATTTGCCCTTTTGG+CGG + tig0019561:168088-168107 Msa1374710:intron 35.0%
AAGTTTCAAATCCGCCAAAA+GGG - tig0019561:168102-168121 None:intergenic 35.0%
AAAGTTTCAAATCCGCCAAA+AGG - tig0019561:168103-168122 None:intergenic 35.0%
TTTAAAAAGGGGTGATTGCA+CGG - tig0019561:168218-168237 None:intergenic 35.0%
!! TTCTGTGTTTTTGAATCCTC+AGG + tig0019561:168318-168337 Msa1374710:intron 35.0%
ACAGAAGTAAGAAAAGGAGA+TGG + tig0019561:168474-168493 Msa1374710:CDS 35.0%
TTGAGTATATCCAAGTCGAA+AGG - tig0019561:168564-168583 None:intergenic 35.0%
!! TTTCGACTTGGATATACTCA+AGG + tig0019561:168563-168582 Msa1374710:CDS 35.0%
!! GTTTGATGATGTGTTCTTTG+TGG + tig0019561:168719-168738 Msa1374710:intron 35.0%
! CTTGTATTTTCCCTAATAGG+CGG + tig0019561:168761-168780 Msa1374710:intron 35.0%
AAAGGAATACCAACAATTGC+AGG + tig0019561:168786-168805 Msa1374710:CDS 35.0%
CTCAAAGAAACACCATGAAA+AGG + tig0019561:168983-169002 Msa1374710:CDS 35.0%
GCTATAGCGTTATTGCATAA+TGG + tig0019561:169175-169194 Msa1374710:intron 35.0%
GCTATAGCGTTATTGCATAA+TGG + tig0019561:169175-169194 Msa1374710:intron 35.0%
ACATTGAACAGTGTTGTCAA+TGG - tig0019561:169373-169392 None:intergenic 35.0%
TGCTCAATATCTTTCAGAAG+AGG + tig0019561:169462-169481 Msa1374710:intron 35.0%
ATATACACCAGAAATGTGCT+GGG - tig0019561:169597-169616 None:intergenic 35.0%
AATATACACCAGAAATGTGC+TGG - tig0019561:169598-169617 None:intergenic 35.0%
AGCTCAAGAATTGATGAGTT+GGG + tig0019561:169689-169708 Msa1374710:CDS 35.0%
! TTCACTCTCTTTTCCTCAAT+TGG + tig0019561:169751-169770 Msa1374710:three_prime_UTR 35.0%
CAAATGACAACAACCAATTG+AGG - tig0019561:169767-169786 None:intergenic 35.0%
! ACACTGTTAGCAATTTTTCC+TGG + tig0019561:169993-170012 Msa1374710:intron 35.0%
CTACCAGTGTTCTCAAATAT+TGG + tig0019561:170032-170051 Msa1374710:intron 35.0%
TAGCCAATATTTGAGAACAC+TGG - tig0019561:170038-170057 None:intergenic 35.0%
GCTGCTAATAAATAGTGTGT+TGG - tig0019561:170116-170135 None:intergenic 35.0%
TTGACAATAGAGATCAGTGT+TGG - tig0019561:170202-170221 None:intergenic 35.0%
ATTGTAAGACAAATCTACCC+TGG + tig0019561:170290-170309 Msa1374710:intron 35.0%
!! AAAAGAATGGATTGAGCATG+AGG + tig0019561:170546-170565 Msa1374710:intron 35.0%
!! AAAGAATGGATTGAGCATGA+GGG + tig0019561:170547-170566 Msa1374710:intron 35.0%
!! GTGTTTTGTCATTTGAGAGA+TGG + tig0019561:170570-170589 Msa1374710:intron 35.0%
CAACCTGTTACGTAATCAAA+GGG + tig0019561:170613-170632 Msa1374710:intron 35.0%
ATTCCCTTTGATTACGTAAC+AGG - tig0019561:170619-170638 None:intergenic 35.0%
! CAATGTCGGTTGATATCAAT+CGG + tig0019561:170667-170686 Msa1374710:intron 35.0%
CTTCTTCGTTGACAATGATA+CGG + tig0019561:170763-170782 Msa1374710:intron 35.0%
TTCTTCGTTGACAATGATAC+GGG + tig0019561:170764-170783 Msa1374710:intron 35.0%
AAATATTGTGAGAGAAAGGG+AGG + tig0019561:170844-170863 Msa1374710:intron 35.0%
TTATCACTTACAGAAGAGTC+GGG - tig0019561:170967-170986 None:intergenic 35.0%
CTTATCACTTACAGAAGAGT+CGG - tig0019561:170968-170987 None:intergenic 35.0%
GACAGACTGAACATTAACAA+GGG - tig0019561:171046-171065 None:intergenic 35.0%
AGACAGACTGAACATTAACA+AGG - tig0019561:171047-171066 None:intergenic 35.0%
! TGTTGTACTGAGGAACATTT+TGG + tig0019561:171157-171176 Msa1374710:intron 35.0%
TAAAACAATGCATCTTGCCT+CGG + tig0019561:171184-171203 Msa1374710:intron 35.0%
! CAATTTTTCTCTCTTGCTTC+CGG + tig0019561:171521-171540 Msa1374710:intron 35.0%
! AATTTTTCTCTCTTGCTTCC+GGG + tig0019561:171522-171541 Msa1374710:intron 35.0%
AGAATGCACAAACTGAAACA+TGG - tig0019561:171855-171874 None:intergenic 35.0%
! TTGTAACTTGGACTTTTCAG+AGG + tig0019561:171899-171918 Msa1374710:intron 35.0%
GCCTTATCACAGCATAATAA+TGG - tig0019561:171977-171996 None:intergenic 35.0%
TTCAAAGCAGTGTGATAAAG+TGG + tig0019561:172209-172228 Msa1374710:intron 35.0%
!!! TTTTTTGTTGCAGAGTAGCT+AGG + tig0019561:172321-172340 Msa1374710:intron 35.0%
! TTTTTGTTGCAGAGTAGCTA+GGG + tig0019561:172322-172341 Msa1374710:intron 35.0%
CATCCGCGATGTTAAATAAA+TGG - tig0019561:172684-172703 None:intergenic 35.0%
CATTTATTTAACATCGCGGA+TGG + tig0019561:172682-172701 Msa1374710:three_prime_UTR 35.0%
CTTTGTTGAGGTTTCAGTGT+TGG - tig0019561:166133-166152 None:intergenic 40.0%
! GTTTGGATCTGCAATTTTGC+AGG + tig0019561:166210-166229 Msa1374710:five_prime_UTR 40.0%
! CGAAGAAATTTTTGTTGGGG+TGG + tig0019561:166383-166402 Msa1374710:five_prime_UTR 40.0%
! GGTTGAAGTTTTGCAATTGC+TGG + tig0019561:166404-166423 Msa1374710:five_prime_UTR 40.0%
! TGAAGTTTTGCAATTGCTGG+AGG + tig0019561:166407-166426 Msa1374710:five_prime_UTR 40.0%
! AGGATTTTTCACTCTTCAGG+TGG + tig0019561:166480-166499 Msa1374710:intron 40.0%
! GGATTTTTCACTCTTCAGGT+GGG + tig0019561:166481-166500 Msa1374710:intron 40.0%
! GATTTTTCACTCTTCAGGTG+GGG + tig0019561:166482-166501 Msa1374710:intron 40.0%
AGGGATGACATGAACTTGAT+TGG - tig0019561:166843-166862 None:intergenic 40.0%
!! GAGAAGCATTCAGTTTCACA+TGG - tig0019561:166934-166953 None:intergenic 40.0%
! ACGCTTTCGATCAAAAGTGT+TGG - tig0019561:167141-167160 None:intergenic 40.0%
!! CAGATTATTAGCTTTGGGCA+TGG + tig0019561:167398-167417 Msa1374710:intron 40.0%
!! GAACACTTGTTTTTCCCAGT+TGG + tig0019561:167448-167467 Msa1374710:intron 40.0%
!! TTGTTTTTCCCAGTTGGTCT+TGG + tig0019561:167454-167473 Msa1374710:intron 40.0%
! TGGTGTTTTGCTTGAATGCT+AGG + tig0019561:167478-167497 Msa1374710:intron 40.0%
! GGTGTTTTGCTTGAATGCTA+GGG + tig0019561:167479-167498 Msa1374710:intron 40.0%
GATTGAATCATGGATCCTGA+AGG + tig0019561:167864-167883 Msa1374710:exon 40.0%
!!! CCTCCAAACTTTTTTCCTTC+AGG - tig0019561:167882-167901 None:intergenic 40.0%
CCTGAAGGAAAAAAGTTTGG+AGG + tig0019561:167879-167898 Msa1374710:CDS 40.0%
GAAGGAAAAAAGTTTGGAGG+AGG + tig0019561:167882-167901 Msa1374710:CDS 40.0%
GGAGACACAGAAGTAAGAAA+AGG + tig0019561:168468-168487 Msa1374710:CDS 40.0%
AAAAGGAGATGGCATGCAAT+TGG + tig0019561:168485-168504 Msa1374710:CDS 40.0%
GCTACACAATTTCTTACAGC+AGG - tig0019561:168627-168646 None:intergenic 40.0%
CGCCTATTAGGGAAAATACA+AGG - tig0019561:168763-168782 None:intergenic 40.0%
ATTCCTTTCTCCGCCTATTA+GGG - tig0019561:168774-168793 None:intergenic 40.0%
TATTCCTTTCTCCGCCTATT+AGG - tig0019561:168775-168794 None:intergenic 40.0%
! AGCATAAGAAGCACAAAGAC+AGG + tig0019561:168841-168860 Msa1374710:CDS 40.0%
! GCATAAGAAGCACAAAGACA+GGG + tig0019561:168842-168861 Msa1374710:CDS 40.0%
CAGAAGCAAAGACAAAGACA+AGG + tig0019561:168914-168933 Msa1374710:CDS 40.0%
TTTCTTTGAGTGATCAGCAC+TGG - tig0019561:168973-168992 None:intergenic 40.0%
! TCTGTGCTAAATAGGTATCG+CGG - tig0019561:169268-169287 None:intergenic 40.0%
TCTATAGCACAATTGCGTAG+TGG + tig0019561:169315-169334 Msa1374710:intron 40.0%
TTGAACAGTGTTGTCAATGG+CGG - tig0019561:169370-169389 None:intergenic 40.0%
! TTTCAGAAGAGGAAGCATGA+CGG + tig0019561:169473-169492 Msa1374710:intron 40.0%
GAGCTCAAGAATTGATGAGT+TGG + tig0019561:169688-169707 Msa1374710:CDS 40.0%
GCTCAAGAATTGATGAGTTG+GGG + tig0019561:169690-169709 Msa1374710:CDS 40.0%
! CTCAAGAATTGATGAGTTGG+GGG + tig0019561:169691-169710 Msa1374710:CDS 40.0%
GCTGTAGCACTATAGCTAAA+CGG + tig0019561:170065-170084 Msa1374710:intron 40.0%
GCTATATCACTGTAGTGTAG+CGG + tig0019561:170145-170164 Msa1374710:intron 40.0%
GAAGCACATTACTACACTGA+TGG - tig0019561:170425-170444 None:intergenic 40.0%
AAGGAGAAAAATGAGAGGGT+GGG - tig0019561:170447-170466 None:intergenic 40.0%
CACCAAGGAGAAAAATGAGA+GGG - tig0019561:170451-170470 None:intergenic 40.0%
!! CTCTCATTTTTCTCCTTGGT+GGG + tig0019561:170450-170469 Msa1374710:intron 40.0%
! GTTAATTAGCGGGTGAGTTA+GGG + tig0019561:170486-170505 Msa1374710:intron 40.0%
GGAGACAGTTAGGAGAAATA+AGG + tig0019561:170507-170526 Msa1374710:intron 40.0%
!! AAGAATGGATTGAGCATGAG+GGG + tig0019561:170548-170567 Msa1374710:intron 40.0%
AACAGGTTGCAGAACTTTGA+GGG - tig0019561:170602-170621 None:intergenic 40.0%
TAACAGGTTGCAGAACTTTG+AGG - tig0019561:170603-170622 None:intergenic 40.0%
GCAACCTGTTACGTAATCAA+AGG + tig0019561:170612-170631 Msa1374710:intron 40.0%
GTGAATCTGTGATGCAATGT+CGG + tig0019561:170653-170672 Msa1374710:intron 40.0%
ACATGTGAATGCAATGGTTG+TGG + tig0019561:170734-170753 Msa1374710:intron 40.0%
! CATTGTCAACGAAGAAGCAT+CGG - tig0019561:170760-170779 None:intergenic 40.0%
GGTTCAATCTGTTGACCTAA+TGG + tig0019561:170903-170922 Msa1374710:intron 40.0%
TTTCTTCAGTAACTCAAGGC+AGG - tig0019561:170930-170949 None:intergenic 40.0%
! TTTTTGTAGCTCAAACCTGC+TGG - tig0019561:171001-171020 None:intergenic 40.0%
! GAACATTAACAAGGGCACAT+GGG - tig0019561:171038-171057 None:intergenic 40.0%
! TGAACATTAACAAGGGCACA+TGG - tig0019561:171039-171058 None:intergenic 40.0%
GAGGTTTGGATTGATTGCAT+GGG - tig0019561:171095-171114 None:intergenic 40.0%
!!! GGCAAGATGCATTGTTTTAG+TGG - tig0019561:171183-171202 None:intergenic 40.0%
TTGCCTCGGCTATATATAAG+AGG + tig0019561:171198-171217 Msa1374710:intron 40.0%
TGCCTCGGCTATATATAAGA+GGG + tig0019561:171199-171218 Msa1374710:intron 40.0%
ATCCCTCTTATATATAGCCG+AGG - tig0019561:171204-171223 None:intergenic 40.0%
GGCTCGTATGAGTGTTATAT+AGG - tig0019561:171471-171490 None:intergenic 40.0%
!! TATTTCACTCTGGGATTCAC+TGG + tig0019561:172134-172153 Msa1374710:intron 40.0%
!! ATTTCACTCTGGGATTCACT+GGG + tig0019561:172135-172154 Msa1374710:intron 40.0%
! TTTTGTTGCAGAGTAGCTAG+GGG + tig0019561:172323-172342 Msa1374710:intron 40.0%
! ATGATGGTGAATTCACCTGA+TGG + tig0019561:172365-172384 Msa1374710:three_prime_UTR 40.0%
!! AATTCACCTGATGGTGGAAA+AGG + tig0019561:172374-172393 Msa1374710:three_prime_UTR 40.0%
! GTCTTCCTTTTCCCAGTTTT+TGG + tig0019561:172473-172492 Msa1374710:intron 40.0%
TATCCAGTGCTCCAAAAACT+GGG - tig0019561:172487-172506 None:intergenic 40.0%
ATATCCAGTGCTCCAAAAAC+TGG - tig0019561:172488-172507 None:intergenic 40.0%
TCACGCCCTAATATTACTGA+CGG + tig0019561:172748-172767 Msa1374710:three_prime_UTR 40.0%
ACAATCACGAGTACTACCGA+AGG + tig0019561:166088-166107 Msa1374710:five_prime_UTR 45.0%
!!! AGGTGATTTGGTGGGTTTTG+TGG + tig0019561:166451-166470 Msa1374710:five_prime_UTR 45.0%
!!! GGTGATTTGGTGGGTTTTGT+GGG + tig0019561:166452-166471 Msa1374710:five_prime_UTR 45.0%
!!! TTGTGCTGTTTTTTCCCCCT+TGG + tig0019561:166789-166808 Msa1374710:intron 45.0%
AAGAAAAGGGGTGGAACCAA+GGG - tig0019561:166808-166827 None:intergenic 45.0%
AAAGAAAAGGGGTGGAACCA+AGG - tig0019561:166809-166828 None:intergenic 45.0%
! GTAATCACATGTGTCGGTGT+GGG - tig0019561:167186-167205 None:intergenic 45.0%
! TGTAATCACATGTGTCGGTG+TGG - tig0019561:167187-167206 None:intergenic 45.0%
TCTGGTGTGCGTGTTTGTTT+CGG + tig0019561:167260-167279 Msa1374710:intron 45.0%
!!! TTTTCCCAGTTGGTCTTGGA+TGG + tig0019561:167458-167477 Msa1374710:intron 45.0%
AACACCATCCAAGACCAACT+GGG - tig0019561:167465-167484 None:intergenic 45.0%
AAACACCATCCAAGACCAAC+TGG - tig0019561:167466-167485 None:intergenic 45.0%
TAGCTGTACAATAGGGGTTG+CGG + tig0019561:167537-167556 Msa1374710:intron 45.0%
! TTTTTGAATCCTCAGGACCG+AGG + tig0019561:168325-168344 Msa1374710:intron 45.0%
! TTTTGAATCCTCAGGACCGA+GGG + tig0019561:168326-168345 Msa1374710:intron 45.0%
TCTCAAGAGAGACAAGTGCT+CGG + tig0019561:168532-168551 Msa1374710:CDS 45.0%
! CGACTTGGATATACTCAAGG+AGG + tig0019561:168566-168585 Msa1374710:CDS 45.0%
TCAAGGAGGCTTTCCAACTA+AGG + tig0019561:168580-168599 Msa1374710:CDS 45.0%
CAAGGAGGCTTTCCAACTAA+GGG + tig0019561:168581-168600 Msa1374710:CDS 45.0%
CTTACAGCAGGCAAATCGAT+GGG - tig0019561:168615-168634 None:intergenic 45.0%
TCTTACAGCAGGCAAATCGA+TGG - tig0019561:168616-168635 None:intergenic 45.0%
TTTCCCTAATAGGCGGAGAA+AGG + tig0019561:168768-168787 Msa1374710:intron 45.0%
GAAGCACAAAGACAGGGATA+AGG + tig0019561:168848-168867 Msa1374710:CDS 45.0%
CAAAGACAGGGATAAGGACA+AGG + tig0019561:168854-168873 Msa1374710:CDS 45.0%
GAAGCACAAACATCGTCACA+AGG + tig0019561:168890-168909 Msa1374710:CDS 45.0%
ATGCAATAACGCTATAGCGC+CGG - tig0019561:169217-169236 None:intergenic 45.0%
TTTCTGTCCCAGCACATTTC+TGG + tig0019561:169587-169606 Msa1374710:intron 45.0%
! TGATGAGTTGGGGGCAATAA+AGG + tig0019561:169700-169719 Msa1374710:CDS 45.0%
!! GAGATCAGTGTTGGCAATTG+TGG - tig0019561:170193-170212 None:intergenic 45.0%
! CAAATGTACTTGTTGGGGAG+TGG + tig0019561:170225-170244 Msa1374710:intron 45.0%
CTATTGAACAACAGCAGCCA+GGG - tig0019561:170310-170329 None:intergenic 45.0%
CTGCTGTTGTTCAATAGCCA+GGG + tig0019561:170313-170332 Msa1374710:intron 45.0%
CAAAACTGAATCTGCAACCC+TGG - tig0019561:170333-170352 None:intergenic 45.0%
CAAGGAGAAAAATGAGAGGG+TGG - tig0019561:170448-170467 None:intergenic 45.0%
!! CACCCTCTCATTTTTCTCCT+TGG + tig0019561:170446-170465 Msa1374710:intron 45.0%
CCACCAAGGAGAAAAATGAG+AGG - tig0019561:170452-170471 None:intergenic 45.0%
!! CCTCTCATTTTTCTCCTTGG+TGG + tig0019561:170449-170468 Msa1374710:intron 45.0%
ACCCCTAGGTGGTTAATTAG+CGG + tig0019561:170475-170494 Msa1374710:intron 45.0%
ACCCGCTAATTAACCACCTA+GGG - tig0019561:170480-170499 None:intergenic 45.0%
! GGTTAATTAGCGGGTGAGTT+AGG + tig0019561:170485-170504 Msa1374710:intron 45.0%
! ATCAGAGCTCTGATCTTGGA+GGG + tig0019561:170691-170710 Msa1374710:intron 45.0%
TGACAATGATACGGGTAGAG+AGG + tig0019561:170772-170791 Msa1374710:intron 45.0%
TCCAGCAACTACAGTACCTT+GGG + tig0019561:170802-170821 Msa1374710:intron 45.0%
GTGGAACTTATGTCATCCCA+AGG - tig0019561:170821-170840 None:intergenic 45.0%
TATTGTGAGAGAAAGGGAGG+AGG + tig0019561:170847-170866 Msa1374710:intron 45.0%
ATTGTGAGAGAAAGGGAGGA+GGG + tig0019561:170848-170867 Msa1374710:intron 45.0%
TAACTCAAGGCAGGTCCATT+AGG - tig0019561:170921-170940 None:intergenic 45.0%
ATAAGCCAAGTAAGTCCAGC+AGG + tig0019561:170983-171002 Msa1374710:intron 45.0%
TCAAACCTGCTGGACTTACT+TGG - tig0019561:170991-171010 None:intergenic 45.0%
! TGGATTGATTGCATGGGTTG+TGG - tig0019561:171089-171108 None:intergenic 45.0%
GGAGGTTTGGATTGATTGCA+TGG - tig0019561:171096-171115 None:intergenic 45.0%
ACTAATACACCAGAGTCAGG+AGG - tig0019561:171120-171139 None:intergenic 45.0%
TCCTGACTCTGGTGTATTAG+TGG + tig0019561:171119-171138 Msa1374710:intron 45.0%
CTGTCCTCATCTATGAAGCA+CGG + tig0019561:171318-171337 Msa1374710:intron 45.0%
TACTTCGACACTCCTACGAT+CGG + tig0019561:171436-171455 Msa1374710:intron 45.0%
TTTGTGTGAGTTGTCCGACA+CGG - tig0019561:171492-171511 None:intergenic 45.0%
AGATGAGGACCTATGAAGCA+TGG - tig0019561:171809-171828 None:intergenic 45.0%
!! CTTTTCAGAGGTGCACAATC+CGG + tig0019561:171911-171930 Msa1374710:intron 45.0%
CTTATCCCACTAAGTGAGGT+CGG - tig0019561:172037-172056 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+AGG - tig0019561:172041-172060 None:intergenic 45.0%
TCACTTAGTGGGATAAGGCT+TGG + tig0019561:172040-172059 Msa1374710:intron 45.0%
ATGGTGAATTCACCTGATGG+TGG + tig0019561:172368-172387 Msa1374710:three_prime_UTR 45.0%
GTGCTCCAAAAACTGGGAAA+AGG - tig0019561:172481-172500 None:intergenic 45.0%
!!! TTTCCCAGTTTTTGGAGCAC+TGG + tig0019561:172481-172500 Msa1374710:intron 45.0%
ATCGCGGATGGATCTGTATA+TGG + tig0019561:172694-172713 Msa1374710:three_prime_UTR 45.0%
!! TGAAATAATTATAATAATTT+GGG - tig0019561:172121-172140 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAACAAT+TGG - tig0019561:172307-172326 None:intergenic 5.0%
!! GGTGGGTTTTGTGGGAATTG+AGG + tig0019561:166460-166479 Msa1374710:five_prime_UTR 50.0%
AGAAAAGGGGTGGAACCAAG+GGG - tig0019561:166807-166826 None:intergenic 50.0%
! GATCGAAAGCGTGTCTGACA+CGG + tig0019561:167149-167168 Msa1374710:intron 50.0%
! ATCGAAAGCGTGTCTGACAC+GGG + tig0019561:167150-167169 Msa1374710:intron 50.0%
! TGATGTGTCACTGCTGTGTC+TGG + tig0019561:167242-167261 Msa1374710:intron 50.0%
AGCTGTACAATAGGGGTTGC+GGG + tig0019561:167538-167557 Msa1374710:intron 50.0%
ACAATAGGGGTTGCGGGAAT+AGG + tig0019561:167544-167563 Msa1374710:intron 50.0%
CACTACCTGCACAGTGTAGT+AGG + tig0019561:168447-168466 Msa1374710:CDS 50.0%
TGTCTCCTACTACACTGTGC+AGG - tig0019561:168455-168474 None:intergenic 50.0%
TCGGATACAGCCTTTCGACT+TGG + tig0019561:168551-168570 Msa1374710:CDS 50.0%
! TGGGAGCTGTTTCCCTTAGT+TGG - tig0019561:168596-168615 None:intergenic 50.0%
ACAGGGATAAGGACAAGGAC+AGG + tig0019561:168859-168878 Msa1374710:CDS 50.0%
CAGGGATAAGGACAAGGACA+GGG + tig0019561:168860-168879 Msa1374710:CDS 50.0%
TTGGGGGCAATAAAGGTTGC+TGG + tig0019561:169707-169726 Msa1374710:CDS 50.0%
! ATGTACTTGTTGGGGAGTGG+AGG + tig0019561:170228-170247 Msa1374710:intron 50.0%
GCTATTGAACAACAGCAGCC+AGG - tig0019561:170311-170330 None:intergenic 50.0%
GCTGCTGTTGTTCAATAGCC+AGG + tig0019561:170312-170331 Msa1374710:intron 50.0%
CCCGCTAATTAACCACCTAG+GGG - tig0019561:170479-170498 None:intergenic 50.0%
CCCCTAGGTGGTTAATTAGC+GGG + tig0019561:170476-170495 Msa1374710:intron 50.0%
CACCCGCTAATTAACCACCT+AGG - tig0019561:170481-170500 None:intergenic 50.0%
GGTGAGTTAGGGAGACAGTT+AGG + tig0019561:170497-170516 Msa1374710:intron 50.0%
! CATCAGAGCTCTGATCTTGG+AGG + tig0019561:170690-170709 Msa1374710:intron 50.0%
GTCCAGCAACTACAGTACCT+TGG + tig0019561:170801-170820 Msa1374710:intron 50.0%
!! TCCCAAGGTACTGTAGTTGC+TGG - tig0019561:170806-170825 None:intergenic 50.0%
! ACAAGGGCACATGGGTATCA+TGG - tig0019561:171030-171049 None:intergenic 50.0%
CTGTCTGTCACCTCTAAACC+AGG + tig0019561:171061-171080 Msa1374710:intron 50.0%
AATACACCAGAGTCAGGAGG+TGG - tig0019561:171117-171136 None:intergenic 50.0%
GCCACTAATACACCAGAGTC+AGG - tig0019561:171123-171142 None:intergenic 50.0%
GTGTCCGTGCTTCATAGATG+AGG - tig0019561:171325-171344 None:intergenic 50.0%
TATGAAGCACGGACACCTCT+AGG + tig0019561:171329-171348 Msa1374710:intron 50.0%
! TACGGGTGTCATAGGAGTGT+CGG - tig0019561:171374-171393 None:intergenic 50.0%
AACACTCATACGAGCCGTGT+CGG + tig0019561:171475-171494 Msa1374710:intron 50.0%
TGTCGGAGTCCATGCTTCAT+AGG + tig0019561:171797-171816 Msa1374710:intron 50.0%
ACTAAGTGAGGTCGGCTACA+TGG - tig0019561:172029-172048 None:intergenic 50.0%
ATGTAGCCGACCTCACTTAG+TGG + tig0019561:172028-172047 Msa1374710:intron 50.0%
TGTAGCCGACCTCACTTAGT+GGG + tig0019561:172029-172048 Msa1374710:intron 50.0%
CGACCTCACTTAGTGGGATA+AGG + tig0019561:172035-172054 Msa1374710:intron 50.0%
! GTGGGATAAGGCTTGGTTGT+TGG + tig0019561:172047-172066 Msa1374710:intron 50.0%
! CTGCTTCCTTTTCCACCATC+AGG - tig0019561:172383-172402 None:intergenic 50.0%
!! CTGATGGTGGAAAAGGAAGC+AGG + tig0019561:172381-172400 Msa1374710:three_prime_UTR 50.0%
GAAAAGGGGTGGAACCAAGG+GGG - tig0019561:166806-166825 None:intergenic 55.0%
CAGCAGTGACACATCAGCAC+CGG - tig0019561:167238-167257 None:intergenic 55.0%
ACAGCACCTGTCAACTCCCT+CGG - tig0019561:168345-168364 None:intergenic 55.0%
TCCGCGATTGACACAGGAAG+CGG - tig0019561:168423-168442 None:intergenic 55.0%
TGTGTGTCCGCGATTGACAC+AGG - tig0019561:168429-168448 None:intergenic 55.0%
TTGTTGGGGAGTGGAGGAAG+AGG + tig0019561:170234-170253 Msa1374710:intron 55.0%
TGTTGGGGAGTGGAGGAAGA+GGG + tig0019561:170235-170254 Msa1374710:intron 55.0%
! CGGCATCAGAGCTCTGATCT+TGG + tig0019561:170687-170706 Msa1374710:intron 55.0%
! GAGCTCTGATCTTGGAGGGT+AGG + tig0019561:170695-170714 Msa1374710:intron 55.0%
TGAGAGAAAGGGAGGAGGGA+AGG + tig0019561:170852-170871 Msa1374710:intron 55.0%
GAGAGAAAGGGAGGAGGGAA+GGG + tig0019561:170853-170872 Msa1374710:intron 55.0%
GGTTGTGGCTCCTGGTTTAG+AGG - tig0019561:171074-171093 None:intergenic 55.0%
! ATTGCATGGGTTGTGGCTCC+TGG - tig0019561:171082-171101 None:intergenic 55.0%
AGAGTCAGGAGGTGGAGGTT+TGG - tig0019561:171109-171128 None:intergenic 55.0%
AAACCTCCACCTCCTGACTC+TGG + tig0019561:171108-171127 Msa1374710:intron 55.0%
! ACGTGTCGTACGGGTGTCAT+AGG - tig0019561:171382-171401 None:intergenic 55.0%
GTTCGTGTCAGTGTCGTGTC+AGG + tig0019561:171768-171787 Msa1374710:intron 55.0%
GTCGTGTCAGGTGTCTGTGT+CGG + tig0019561:171780-171799 Msa1374710:intron 55.0%
GGGAAACGAGTGATACGAGC+CGG - tig0019561:172099-172118 None:intergenic 55.0%
TGTCAACTCCCTCGGTCCTG+AGG - tig0019561:168337-168356 None:intergenic 60.0%
TCAGGACCGAGGGAGTTGAC+AGG + tig0019561:168336-168355 Msa1374710:intron 60.0%
! GAGGGAGTTGACAGGTGCTG+TGG + tig0019561:168344-168363 Msa1374710:CDS 60.0%
GCCGCTTCCTGTGTCAATCG+CGG + tig0019561:168419-168438 Msa1374710:CDS 60.0%
!! CTCCTTGGTGGGTTACCCCT+AGG + tig0019561:170461-170480 Msa1374710:intron 60.0%
CACCTAGGGGTAACCCACCA+AGG - tig0019561:170466-170485 None:intergenic 60.0%
!! CTTGGTGGGTTACCCCTAGG+TGG + tig0019561:170464-170483 Msa1374710:intron 60.0%
GAAAGGGAGGAGGGAAGGGT+AGG + tig0019561:170857-170876 Msa1374710:intron 60.0%
GGAGGAGGGAAGGGTAGGAA+TGG + tig0019561:170862-170881 Msa1374710:intron 60.0%
ACACCAGAGTCAGGAGGTGG+AGG - tig0019561:171114-171133 None:intergenic 60.0%
!! GCACGGACACCTCTAGGACT+AGG + tig0019561:171335-171354 Msa1374710:intron 60.0%
!! CTCTAGGACTAGGCGTGTCG+CGG + tig0019561:171345-171364 Msa1374710:intron 60.0%
CGGTTCGACACGTGTCGTAC+GGG - tig0019561:171391-171410 None:intergenic 60.0%
! CCGGTTCGACACGTGTCGTA+CGG - tig0019561:171392-171411 None:intergenic 60.0%
CCGTACGACACGTGTCGAAC+CGG + tig0019561:171389-171408 Msa1374710:intron 60.0%
!! AGGTGTCGGACACCGATCGT+AGG - tig0019561:171451-171470 None:intergenic 60.0%
CGCGACACGCCTAGTCCTAG+AGG - tig0019561:171347-171366 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019561 gene 166021 172771 166021 ID=Msa1374710;Name=Msa1374710
tig0019561 mRNA 166021 172771 166021 ID=Msa1374710-mRNA-1;Parent=Msa1374710;Name=Msa1374710-mRNA-1;_AED=0.10;_eAED=0.10;_QI=376|1|1|1|0.5|0.33|9|448|218
tig0019561 exon 166021 166231 166021 ID=Msa1374710-mRNA-1:exon:3974;Parent=Msa1374710-mRNA-1
tig0019561 exon 166379 166498 166379 ID=Msa1374710-mRNA-1:exon:3975;Parent=Msa1374710-mRNA-1
tig0019561 exon 167828 167903 167828 ID=Msa1374710-mRNA-1:exon:3976;Parent=Msa1374710-mRNA-1
tig0019561 exon 168340 168629 168340 ID=Msa1374710-mRNA-1:exon:3977;Parent=Msa1374710-mRNA-1
tig0019561 exon 168780 169004 168780 ID=Msa1374710-mRNA-1:exon:3978;Parent=Msa1374710-mRNA-1
tig0019561 exon 169479 169538 169479 ID=Msa1374710-mRNA-1:exon:3979;Parent=Msa1374710-mRNA-1
tig0019561 exon 169683 169829 169683 ID=Msa1374710-mRNA-1:exon:3980;Parent=Msa1374710-mRNA-1
tig0019561 exon 172334 172402 172334 ID=Msa1374710-mRNA-1:exon:3981;Parent=Msa1374710-mRNA-1
tig0019561 exon 172489 172771 172489 ID=Msa1374710-mRNA-1:exon:3982;Parent=Msa1374710-mRNA-1
tig0019561 five_prime_UTR 166021 166231 166021 ID=Msa1374710-mRNA-1:five_prime_utr;Parent=Msa1374710-mRNA-1
tig0019561 five_prime_UTR 166379 166498 166379 ID=Msa1374710-mRNA-1:five_prime_utr;Parent=Msa1374710-mRNA-1
tig0019561 five_prime_UTR 167828 167872 167828 ID=Msa1374710-mRNA-1:five_prime_utr;Parent=Msa1374710-mRNA-1
tig0019561 CDS 167873 167903 167873 ID=Msa1374710-mRNA-1:cds;Parent=Msa1374710-mRNA-1
tig0019561 CDS 168340 168629 168340 ID=Msa1374710-mRNA-1:cds;Parent=Msa1374710-mRNA-1
tig0019561 CDS 168780 169004 168780 ID=Msa1374710-mRNA-1:cds;Parent=Msa1374710-mRNA-1
tig0019561 CDS 169479 169538 169479 ID=Msa1374710-mRNA-1:cds;Parent=Msa1374710-mRNA-1
tig0019561 CDS 169683 169733 169683 ID=Msa1374710-mRNA-1:cds;Parent=Msa1374710-mRNA-1
tig0019561 three_prime_UTR 169734 169829 169734 ID=Msa1374710-mRNA-1:three_prime_utr;Parent=Msa1374710-mRNA-1
tig0019561 three_prime_UTR 172334 172402 172334 ID=Msa1374710-mRNA-1:three_prime_utr;Parent=Msa1374710-mRNA-1
tig0019561 three_prime_UTR 172489 172771 172489 ID=Msa1374710-mRNA-1:three_prime_utr;Parent=Msa1374710-mRNA-1
Gene Sequence

>Msa1374710

ATGGATCCTGAAGGAAAAAAGTTTGGAGGAGGACCGAGGGAGTTGACAGGTGCTGTGGATCTCATAAGCCATTTCAAATTAATACCGCACTATGAATTTTTCTGCAAGAGGCCGCTTCCTGTGTCAATCGCGGACACACACTACCTGCACAGTGTAGTAGGAGACACAGAAGTAAGAAAAGGAGATGGCATGCAATTGGACGAACTCATTCAGAATACATCTTTCTCAAGAGAGACAAGTGCTCGGATACAGCCTTTCGACTTGGATATACTCAAGGAGGCTTTCCAACTAAGGGAAACAGCTCCCATCGATTTGCCTGCTGCGGAGAAAGGAATACCAACAATTGCAGGAAAATCAAAAAGTGAGAAAGACAAAGAGAAGAAGCATAAGAAGCACAAAGACAGGGATAAGGACAAGGACAGGGAGCATAAGAAGCACAAACATCGTCACAAGGACAGAAGCAAAGACAAAGACAAGGACAAAAAGAAAGACAAAAGCGGGCATCGTGATTCCAGTGCTGATCACTCAAAGAAACACCATGAAAAGAAGAGGAAGCATGACGGAGATGATGATGCTAATGATGTGCACAAACATAAAAAGAGTAAGCACAAGAGCTCAAGAATTGATGAGTTGGGGGCAATAAAGGTTGCTGGCTGA

Protein sequence

>Msa1374710

MDPEGKKFGGGPRELTGAVDLISHFKLIPHYEFFCKRPLPVSIADTHYLHSVVGDTEVRKGDGMQLDELIQNTSFSRETSARIQPFDLDILKEAFQLRETAPIDLPAAEKGIPTIAGKSKSEKDKEKKHKKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSGHRDSSADHSKKHHEKKRKHDGDDDANDVHKHKKSKHKSSRIDELGAIKVAG*