AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440500 MtrunA17_Chr3g0134091 87.416 445 56 0 1 445 1 445 0.0 824
Msa0440500 MtrunA17_Chr3g0134121 84.327 453 70 1 1 452 1 453 0.0 800
Msa0440500 MtrunA17_Chr3g0134101 87.168 452 41 4 1 451 18 453 0.0 800
Msa0440500 MtrunA17_Chr3g0134111 79.565 460 86 2 1 456 2 457 0.0 761
Msa0440500 MtrunA17_Chr3g0134061 66.739 460 142 5 5 453 4 463 0.0 625
Msa0440500 MtrunA17_Chr3g0134041 66.813 455 140 4 1 451 2 449 0.0 616
Msa0440500 MtrunA17_Chr3g0134071 65.351 456 144 5 9 455 10 460 0.0 605
Msa0440500 MtrunA17_Chr3g0134131 53.102 403 73 5 1 403 1 287 7.44e-134 388
Msa0440500 MtrunA17_Chr4g0005941 38.889 504 237 12 1 450 1 487 1.05e-96 299
Msa0440500 MtrunA17_Chr3g0113181 37.860 486 228 13 5 446 11 466 9.04e-96 296
Msa0440500 MtrunA17_Chr5g0436621 38.323 501 235 12 1 446 1 482 3.53e-95 295
Msa0440500 MtrunA17_Chr4g0053111 39.083 458 251 11 3 446 1 444 9.18e-93 288
Msa0440500 MtrunA17_Chr4g0010381 38.462 442 245 9 20 450 15 440 8.90e-89 277
Msa0440500 MtrunA17_Chr8g0354371 39.294 425 242 9 29 450 30 441 1.10e-88 277
Msa0440500 MtrunA17_Chr4g0010361 37.923 443 246 11 21 450 16 442 1.30e-87 274
Msa0440500 MtrunA17_Chr8g0359251 38.407 427 247 8 28 450 28 442 2.14e-87 274
Msa0440500 MtrunA17_Chr4g0053081 36.761 457 261 10 3 446 1 442 1.99e-85 269
Msa0440500 MtrunA17_Chr4g0010331 38.851 435 246 9 21 450 16 435 3.08e-85 268
Msa0440500 MtrunA17_Chr4g0010311 37.868 441 248 9 21 450 16 441 1.34e-84 266
Msa0440500 MtrunA17_Chr3g0125001 38.391 435 242 10 23 450 18 433 1.44e-84 266
Msa0440500 MtrunA17_Chr7g0224131 36.735 441 250 10 21 450 16 438 4.64e-83 262
Msa0440500 MtrunA17_Chr4g0053091 35.667 457 251 10 5 446 3 431 1.56e-81 258
Msa0440500 MtrunA17_Chr4g0053061 36.481 466 254 14 8 451 34 479 2.06e-81 259
Msa0440500 MtrunA17_Chr3g0087221 37.955 440 240 11 29 450 24 448 1.57e-80 256
Msa0440500 MtrunA17_Chr8g0374911 36.526 449 245 13 23 451 44 472 7.65e-79 253
Msa0440500 MtrunA17_Chr4g0010121 36.190 420 236 10 23 429 63 463 8.10e-77 248
Msa0440500 MtrunA17_Chr8g0374641 37.063 429 229 15 21 431 21 426 2.30e-73 237
Msa0440500 MtrunA17_Chr4g0010351 36.111 360 207 8 21 369 16 363 2.63e-64 212
Msa0440500 MtrunA17_Chr6g0467861 31.405 484 271 12 5 449 46 507 2.30e-61 207
Msa0440500 MtrunA17_Chr8g0353901 38.073 218 130 4 240 453 20 236 7.65e-41 146
Msa0440500 MtrunA17_Chr4g0001861 26.269 453 288 16 6 440 3 427 1.48e-34 134
Msa0440500 MtrunA17_Chr8g0371821 28.607 402 224 15 68 440 56 423 1.17e-32 128
Msa0440500 MtrunA17_Chr2g0334001 26.290 407 272 13 48 440 34 426 4.63e-31 124
Msa0440500 MtrunA17_Chr8g0353891 35.945 217 128 6 8 223 6 212 2.47e-29 114
Msa0440500 MtrunA17_Chr7g0224121 42.667 150 75 4 42 190 39 178 4.10e-29 113
Msa0440500 MtrunA17_Chr2g0311401 27.178 287 196 5 163 440 14 296 1.75e-27 111
Msa0440500 MtrunA17_Chr8g0386141 29.524 315 191 11 62 362 53 350 1.88e-27 114
Msa0440500 MtrunA17_Chr4g0072041 26.742 445 260 17 19 431 34 444 8.58e-27 112
Msa0440500 MtrunA17_Chr1g0165671 26.477 457 264 20 30 450 41 461 3.63e-26 110
Msa0440500 MtrunA17_Chr4g0053071 39.860 143 85 1 304 446 1 142 5.30e-26 103
Msa0440500 MtrunA17_Chr6g0463321 30.841 214 116 2 205 417 2 184 7.02e-26 103
Msa0440500 MtrunA17_Chr6g0456591 36.686 169 96 4 23 190 32 190 7.44e-26 105
Msa0440500 MtrunA17_Chr3g0132001 29.642 307 188 12 68 362 66 356 1.20e-25 108
Msa0440500 MtrunA17_Chr4g0053051 39.394 132 79 1 319 450 1 131 1.44e-23 95.9
Msa0440500 MtrunA17_Chr6g0463331 44.068 118 62 3 79 193 45 161 1.54e-23 97.1
Msa0440500 MtrunA17_Chr6g0470591 30.903 288 177 12 69 344 72 349 2.10e-23 102
Msa0440500 MtrunA17_Chr1g0165661 28.610 367 225 17 65 419 61 402 2.39e-23 102
Msa0440500 MtrunA17_Chr4g0054081 24.554 448 274 16 29 440 30 449 3.48e-23 101
Msa0440500 MtrunA17_Chr5g0433641 24.837 459 291 17 2 436 3 431 3.36e-22 99.0
Msa0440500 MtrunA17_Chr3g0087401 25.432 405 248 16 62 431 48 433 5.12e-22 98.2
Msa0440500 MtrunA17_Chr3g0141851 27.666 347 225 11 65 399 58 390 5.88e-22 98.2
Msa0440500 MtrunA17_Chr7g0224391 28.840 319 200 11 56 362 56 359 7.57e-20 91.7
Msa0440500 MtrunA17_Chr7g0253541 27.020 396 241 17 71 433 63 443 1.08e-19 91.3
Msa0440500 MtrunA17_Chr7g0273761 26.360 478 287 19 2 448 375 818 1.25e-19 92.0
Msa0440500 MtrunA17_Chr1g0191081 26.667 390 247 15 65 437 70 437 1.96e-19 90.5
Msa0440500 MtrunA17_Chr7g0273781 25.503 447 277 20 30 447 57 476 2.58e-19 90.5
Msa0440500 MtrunA17_Chr1g0165681 26.724 348 218 15 13 347 16 339 1.34e-18 87.8
Msa0440500 MtrunA17_Chr7g0219241 25.000 468 294 20 15 441 16 467 2.51e-18 87.4
Msa0440500 MtrunA17_Chr4g0027071 24.286 280 187 7 68 334 69 336 1.52e-17 84.7
Msa0440500 MtrunA17_Chr1g0165711 27.362 307 196 11 30 325 23 313 2.30e-17 84.0
Msa0440500 MtrunA17_Chr7g0274021 25.945 397 267 11 65 446 60 444 2.31e-17 84.3
Msa0440500 MtrunA17_Chr7g0219121 24.885 434 250 17 29 408 28 439 2.45e-16 81.3
Msa0440500 MtrunA17_Chr6g0454761 25.250 400 262 14 60 436 58 443 3.36e-16 81.6
Msa0440500 MtrunA17_Chr6g0454761 25.476 420 253 16 55 439 540 934 2.16e-12 69.3
Msa0440500 MtrunA17_Chr3g0097841 27.451 204 130 5 242 431 27 226 3.50e-16 78.2
Msa0440500 MtrunA17_Chr2g0283361 25.434 346 223 13 71 401 61 386 1.41e-15 78.6
Msa0440500 MtrunA17_Chr7g0253531 24.113 423 268 16 50 436 41 446 2.39e-15 78.2
Msa0440500 MtrunA17_Chr7g0253501 23.571 420 264 15 50 431 41 441 5.86e-15 77.0
Msa0440500 MtrunA17_Chr7g0224101 33.333 123 73 1 219 332 13 135 9.97e-15 71.2
Msa0440500 MtrunA17_Chr3g0097851 36.082 97 57 2 252 344 8 103 1.12e-14 70.5
Msa0440500 MtrunA17_Chr3g0087901 23.567 471 295 19 6 436 8 453 1.50e-13 72.4
Msa0440500 MtrunA17_Chr3g0106721 26.277 274 183 7 69 331 69 334 2.36e-13 72.0
Msa0440500 MtrunA17_Chr7g0219181 22.940 449 292 18 29 436 29 464 7.75e-13 70.5
Msa0440500 MtrunA17_Chr3g0106741 27.660 188 115 5 160 334 132 311 1.76e-12 68.9
Msa0440500 MtrunA17_Chr5g0442701 22.997 387 240 17 48 399 49 412 1.95e-12 68.9
Msa0440500 MtrunA17_Chr7g0235531 22.691 379 247 14 6 361 4 359 4.42e-12 67.8
Msa0440500 MtrunA17_Chr5g0442691 22.312 372 234 15 63 399 84 435 7.30e-12 67.4
Msa0440500 MtrunA17_Chr3g0106761 25.556 270 167 11 82 334 28 280 3.70e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440500 AT5G42830.1 56.278 446 179 4 13 451 14 450 0.0 517
Msa0440500 AT5G07850.1 53.139 446 208 1 6 450 8 453 1.59e-171 489
Msa0440500 AT5G07860.1 53.348 448 198 5 6 449 8 448 4.84e-164 470
Msa0440500 AT5G07870.1 50.655 458 209 3 6 450 8 461 1.86e-161 464
Msa0440500 AT5G67150.1 39.427 454 252 12 8 451 7 447 1.19e-100 308
Msa0440500 AT2G39980.1 39.703 471 216 10 29 450 29 480 8.31e-99 305
Msa0440500 AT5G01210.1 38.525 488 241 13 3 450 1 469 2.32e-89 280
Msa0440500 AT3G50270.1 35.965 456 266 12 8 451 8 449 1.07e-83 265
Msa0440500 AT3G50280.1 35.619 452 270 11 3 446 1 439 1.28e-79 254
Msa0440500 AT3G50300.1 35.321 436 259 12 6 432 4 425 7.05e-77 247
Msa0440500 AT5G38130.1 35.080 439 254 12 6 432 24 443 1.83e-71 233
Msa0440500 AT5G67160.1 35.047 428 252 11 28 451 28 433 1.60e-69 228
Msa0440500 AT5G23940.1 33.478 460 277 12 6 448 3 450 4.65e-65 217
Msa0440500 AT3G50280.2 38.436 307 178 6 146 446 8 309 3.86e-56 189
Msa0440500 AT3G50290.1 37.066 259 150 6 147 396 15 269 2.96e-42 151
Msa0440500 AT5G48930.1 26.535 456 283 16 6 440 3 427 5.02e-34 132
Msa0440500 AT2G19070.1 27.752 436 257 16 29 431 25 435 9.67e-33 129
Msa0440500 AT5G41040.2 29.379 354 213 13 62 399 63 395 4.47e-28 116
Msa0440500 AT5G41040.1 29.379 354 213 13 62 399 79 411 5.62e-28 116
Msa0440500 AT3G48720.1 29.341 334 193 15 18 334 18 325 2.15e-23 102
Msa0440500 AT5G63560.1 28.025 314 191 12 62 361 55 347 2.31e-20 93.6
Msa0440500 AT1G31490.1 27.446 419 248 20 58 455 52 435 1.64e-19 90.9
Msa0440500 AT5G57840.1 25.217 460 280 18 6 436 3 427 6.50e-19 89.4
Msa0440500 AT2G40230.1 26.190 378 214 14 63 409 54 397 7.85e-19 89.0
Msa0440500 AT1G65450.1 27.483 302 180 12 56 335 60 344 1.52e-18 88.2
Msa0440500 AT1G28680.2 25.086 291 199 10 71 353 65 344 1.44e-17 84.7
Msa0440500 AT1G28680.1 25.086 291 199 10 71 353 65 344 1.98e-17 84.7
Msa0440500 AT1G27620.1 26.814 317 180 10 68 358 58 348 5.91e-16 80.1
Msa0440500 AT2G25150.1 25.836 329 212 13 61 374 60 371 1.08e-15 79.3
Msa0440500 AT1G78990.1 22.977 309 197 12 48 342 52 333 3.84e-15 77.8
Msa0440500 AT3G03480.1 26.061 330 208 15 30 342 33 343 1.44e-14 75.9
Msa0440500 AT5G16410.1 23.501 417 261 16 66 455 89 474 1.73e-14 75.9
Msa0440500 AT1G03390.1 23.951 405 249 17 56 431 67 441 7.86e-14 73.9
Msa0440500 AT1G65450.3 27.128 188 111 6 166 335 1 180 6.79e-12 66.6
Msa0440500 AT5G39090.1 22.609 460 309 16 4 439 3 439 9.79e-12 67.0

Find 104 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTAAGGAATATTT+TGG 0.093791 3_3:+7959867 Msa0440500:CDS
CAAAATGATATTCCTGTTTA+TGG 0.111562 3_3:+7959522 Msa0440500:CDS
AATACGTATGGAAATGAATT+TGG 0.183687 3_3:+7960107 Msa0440500:CDS
TTAAATGGAAGGTTGATAAT+TGG 0.249266 3_3:-7959597 None:intergenic
AACTCGTGGTGATGTTTAAA+TGG 0.296206 3_3:-7959612 None:intergenic
AATCTTTATCAGCATTAGTT+TGG 0.307683 3_3:+7959757 Msa0440500:CDS
CCACTTATCATCACAGTATA+AGG 0.318537 3_3:-7960071 None:intergenic
CACGAGTTTGTTCACACATA+TGG 0.341216 3_3:+7959627 Msa0440500:CDS
AATGTGTTAAATGACATATT+TGG 0.351013 3_3:-7959020 None:intergenic
ATAATTGGACCATAACCTTC+TGG 0.355852 3_3:-7959582 None:intergenic
AACATGCAGAAACGATGTTT+AGG 0.378660 3_3:-7958963 None:intergenic
ACAATGGGTGGGACATCAAT+GGG 0.389297 3_3:-7959324 None:intergenic
TCTGTGATGGAACATCTTAT+TGG 0.391840 3_3:+7959469 Msa0440500:CDS
TCAGAGAACAACTTGCAAAA+TGG 0.392004 3_3:+7959815 Msa0440500:CDS
GGATATGCTAACAAATTTGA+TGG 0.406437 3_3:+7960158 Msa0440500:CDS
CTCCCTCCTCCTTCTTGACC+TGG 0.408040 3_3:-7960197 None:intergenic
AGATGGTTTCCAGAAGGTTA+TGG 0.413058 3_3:+7959573 Msa0440500:CDS
TTCCATTTCTATCCCCTCTC+AGG 0.415536 3_3:+7959177 Msa0440500:CDS
GTGGATAGGTTGATGTGAAA+TGG 0.419118 3_3:-7959547 None:intergenic
CAATTCACAGAATTAGTAGA+TGG 0.423886 3_3:+7959414 Msa0440500:CDS
ATCTACACATTATAACCAAA+AGG 0.424756 3_3:+7959059 Msa0440500:CDS
ATTTGGAATGGGAAAAGCTT+TGG 0.427618 3_3:+7960124 Msa0440500:CDS
AATATGTCATTTAACACATT+GGG 0.429631 3_3:+7959023 Msa0440500:CDS
ACATGCAGAAACGATGTTTA+GGG 0.431483 3_3:-7958962 None:intergenic
ATCAACCTATCCACAATAGA+TGG 0.431811 3_3:+7959556 Msa0440500:CDS
ATTTGGTTTGAGTCTTCGAT+TGG 0.434962 3_3:-7959003 None:intergenic
TGTGAAATGGGACCATAAAC+AGG 0.441469 3_3:-7959534 None:intergenic
ATCACAGAGACAATGATTCA+TGG 0.442497 3_3:-7959454 None:intergenic
TTTGGTTTGAGTCTTCGATT+GGG 0.443458 3_3:-7959002 None:intergenic
TCATGCACGTCGACTACAAC+AGG 0.443590 3_3:+7959791 Msa0440500:CDS
TGCATGAATAAATTTAGCTC+CGG 0.444458 3_3:-7959268 None:intergenic
AATGGAAAAGCGTGAGGGAA+AGG 0.449937 3_3:-7959161 None:intergenic
TATGGAAATGAATTTGGAAT+GGG 0.460328 3_3:+7960113 Msa0440500:CDS
ATGGAAAAGCGTGAGGGAAA+GGG 0.461186 3_3:-7959160 None:intergenic
GGTTCTCTATGAAATGTTGT+TGG 0.465501 3_3:-7959116 None:intergenic
GACAATGGGTGGGACATCAA+TGG 0.465845 3_3:-7959325 None:intergenic
TCAAAGAACGATTGGACAAT+GGG 0.466912 3_3:-7959339 None:intergenic
GAGGTGGTTCCATTCTTGTT+CGG 0.467336 3_3:-7959848 None:intergenic
CCAAAATATTCCTTAGGAAG+AGG 0.467793 3_3:-7959867 None:intergenic
ATGATAATAAAGTGGTGCTT+AGG 0.471109 3_3:+7959991 Msa0440500:CDS
GAGTTGCTAGAGAATGATCT+AGG 0.474371 3_3:+7959930 Msa0440500:CDS
GAATTCCCAAAATATTCCTT+AGG 0.477642 3_3:-7959873 None:intergenic
GGAAAAGTAATTTCATATCC+AGG 0.482689 3_3:+7960179 Msa0440500:CDS
TCACCGAGGTTTAATACGTA+TGG 0.489403 3_3:+7960095 Msa0440500:CDS
AAATATGTCATTTAACACAT+TGG 0.493987 3_3:+7959022 Msa0440500:CDS
AGTGTTTCAGTTTGTCCACC+AGG 0.507243 3_3:-7959137 None:intergenic
TGTTGGTTTAGTAATGATGT+TGG 0.510991 3_3:-7959099 None:intergenic
CAATGGGTGGGACATCAATG+GGG 0.513002 3_3:-7959323 None:intergenic
TGCTAGAGAATGATCTAGGA+TGG 0.520529 3_3:+7959934 Msa0440500:CDS
TGCAAATCATGATAATAAAG+TGG 0.522035 3_3:+7959983 Msa0440500:CDS
ACCTGAGAAAATGATGGTGC+TGG 0.523005 3_3:+7960244 Msa0440500:CDS
TACAAACAACCGAACAAGAA+TGG 0.524034 3_3:+7959839 Msa0440500:CDS
TGTCATGATCAAAGAACGAT+TGG 0.527909 3_3:-7959347 None:intergenic
GCATGAATAAATTTAGCTCC+GGG 0.529301 3_3:-7959267 None:intergenic
TGGATAGGTTGATGTGAAAT+GGG 0.531677 3_3:-7959546 None:intergenic
GTATGGAAATGAATTTGGAA+TGG 0.534748 3_3:+7960112 Msa0440500:CDS
CCTTATACTGTGATGATAAG+TGG 0.535234 3_3:+7960071 Msa0440500:CDS
AATGGAACCACCTCTTCCTA+AGG 0.542226 3_3:+7959857 Msa0440500:CDS
TGTAGTGAGTGCTGAAACGA+CGG 0.546049 3_3:+7959902 Msa0440500:CDS
TCTACACATTATAACCAAAA+GGG 0.546861 3_3:+7959060 Msa0440500:CDS
GGAAACCATCTATTGTGGAT+AGG 0.548035 3_3:-7959561 None:intergenic
CGTGGTGATGTTTAAATGGA+AGG 0.548108 3_3:-7959608 None:intergenic
AGTAACAAGACGACCTGAGA+GGG 0.549751 3_3:-7959190 None:intergenic
GACCTGAGAGGGGATAGAAA+TGG 0.554535 3_3:-7959179 None:intergenic
AAAGCTTTGGCAGTTAGAAG+TGG 0.567341 3_3:+7960137 Msa0440500:CDS
AATGGGTGGGACATCAATGG+GGG 0.568371 3_3:-7959322 None:intergenic
TTGGTTTGAGTCTTCGATTG+GGG 0.568932 3_3:-7959001 None:intergenic
ATGATCTAGGATGGGCAGCA+TGG 0.569534 3_3:+7959943 Msa0440500:CDS
ATCAAAGAACGATTGGACAA+TGG 0.570569 3_3:-7959340 None:intergenic
ACGAAAACAGTATAAGAATG+AGG 0.571532 3_3:-7959228 None:intergenic
GACAAAGCAGTCAACCATGA+TGG 0.574887 3_3:+7959366 Msa0440500:CDS
ATGAATCATTGTCTCTGTGA+TGG 0.575359 3_3:+7959456 Msa0440500:CDS
TGCTTAGGTCGGTTGAAGAG+TGG 0.577268 3_3:+7960006 Msa0440500:CDS
TATAGCGAAACTTAAAGCAA+AGG 0.578915 3_3:+7959695 Msa0440500:CDS
TATCCAGGTCAAGAAGGAGG+AGG 0.584517 3_3:+7960194 Msa0440500:CDS
CACAATAGATGGTTTCCAGA+AGG 0.584706 3_3:+7959567 Msa0440500:CDS
ATTTCATATCCAGGTCAAGA+AGG 0.586316 3_3:+7960188 Msa0440500:CDS
CAGAAACGATGTTTAGGGAA+GGG 0.587217 3_3:-7958957 None:intergenic
GTTATAATGTGTAGATAACA+TGG 0.589863 3_3:-7959052 None:intergenic
ATAGTCAAAGATTAGAACAA+AGG 0.594150 3_3:-7960308 None:intergenic
AAATATTCCTTAGGAAGAGG+TGG 0.594958 3_3:-7959864 None:intergenic
CTTCTGGAAACCATCTATTG+TGG 0.595445 3_3:-7959566 None:intergenic
ATCCAGGTCAAGAAGGAGGA+GGG 0.602246 3_3:+7960195 Msa0440500:CDS
GCAGAAACGATGTTTAGGGA+AGG 0.605789 3_3:-7958958 None:intergenic
TTTCCATACGTATTAAACCT+CGG 0.609189 3_3:-7960098 None:intergenic
ACAACATTTCATAGAGAACC+TGG 0.610615 3_3:+7959119 Msa0440500:CDS
AAGAACGATTGGACAATGGG+TGG 0.614907 3_3:-7959336 None:intergenic
AGAACGATTGGACAATGGGT+GGG 0.617288 3_3:-7959335 None:intergenic
TAATAAAGTGGTGCTTAGGT+CGG 0.624945 3_3:+7959995 Msa0440500:CDS
GCTAGAGAATGATCTAGGAT+GGG 0.627088 3_3:+7959935 Msa0440500:CDS
TGGTTTGAGTCTTCGATTGG+GGG 0.638810 3_3:-7959000 None:intergenic
GATAGAAATGGAAAAGCGTG+AGG 0.641029 3_3:-7959167 None:intergenic
TCTTTCACCTGAGAAAATGA+TGG 0.654677 3_3:+7960238 Msa0440500:CDS
TCATATCCAGGTCAAGAAGG+AGG 0.656740 3_3:+7960191 Msa0440500:CDS
AAGACATGGTGTGACCATCA+TGG 0.667161 3_3:-7959380 None:intergenic
GGCAGCATGGAAAATTCATG+TGG 0.671300 3_3:+7959956 Msa0440500:CDS
GTGAGTGCTGAAACGACGGT+AGG 0.677302 3_3:+7959906 Msa0440500:CDS
TTGAATAGATAACAAAGACA+TGG 0.686062 3_3:-7959394 None:intergenic
ATAGAAATGGAAAAGCGTGA+GGG 0.687050 3_3:-7959166 None:intergenic
TAGTAACAAGACGACCTGAG+AGG 0.695039 3_3:-7959191 None:intergenic
GTAACAAGACGACCTGAGAG+GGG 0.714877 3_3:-7959189 None:intergenic
ACATTTCATAGAGAACCTGG+TGG 0.735789 3_3:+7959122 Msa0440500:CDS
TGATGATAAGTGGTTCACCG+AGG 0.741768 3_3:+7960081 Msa0440500:CDS
CATATGTGTGAACAAACTCG+TGG 0.754058 3_3:-7959626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTGTTAAATGACATATT+TGG - chr3_3:7959023-7959042 None:intergenic 20.0%
!!! AAATATGTCATTTAACACAT+TGG + chr3_3:7959022-7959041 Msa0440500:CDS 20.0%
!!! AATATGTCATTTAACACATT+GGG + chr3_3:7959023-7959042 Msa0440500:CDS 20.0%
!!! AAGATTCTCTCTTTTAAAAT+GGG - chr3_3:7959657-7959676 None:intergenic 20.0%
!! AAATCTAATCGATACAAAAA+AGG - chr3_3:7960041-7960060 None:intergenic 20.0%
!! AATGTGTTAAATGACATATT+TGG - chr3_3:7959023-7959042 None:intergenic 20.0%
!!! AAATATGTCATTTAACACAT+TGG + chr3_3:7959022-7959041 Msa0440500:CDS 20.0%
!!! AATATGTCATTTAACACATT+GGG + chr3_3:7959023-7959042 Msa0440500:CDS 20.0%
!!! AAGATTCTCTCTTTTAAAAT+GGG - chr3_3:7959657-7959676 None:intergenic 20.0%
!! AAATCTAATCGATACAAAAA+AGG - chr3_3:7960041-7960060 None:intergenic 20.0%
! GTTATAATGTGTAGATAACA+TGG - chr3_3:7959055-7959074 None:intergenic 25.0%
! ATCTACACATTATAACCAAA+AGG + chr3_3:7959059-7959078 Msa0440500:CDS 25.0%
! TCTACACATTATAACCAAAA+GGG + chr3_3:7959060-7959079 Msa0440500:CDS 25.0%
! TTGAATAGATAACAAAGACA+TGG - chr3_3:7959397-7959416 None:intergenic 25.0%
! CAAAATGATATTCCTGTTTA+TGG + chr3_3:7959522-7959541 Msa0440500:CDS 25.0%
!!! TTAAATGGAAGGTTGATAAT+TGG - chr3_3:7959600-7959619 None:intergenic 25.0%
!!! GAAGATTCTCTCTTTTAAAA+TGG - chr3_3:7959658-7959677 None:intergenic 25.0%
! AATCTTTATCAGCATTAGTT+TGG + chr3_3:7959757-7959776 Msa0440500:CDS 25.0%
! TGCAAATCATGATAATAAAG+TGG + chr3_3:7959983-7960002 Msa0440500:CDS 25.0%
! AATACGTATGGAAATGAATT+TGG + chr3_3:7960107-7960126 Msa0440500:CDS 25.0%
!! TATGGAAATGAATTTGGAAT+GGG + chr3_3:7960113-7960132 Msa0440500:CDS 25.0%
! GTTATAATGTGTAGATAACA+TGG - chr3_3:7959055-7959074 None:intergenic 25.0%
! ATCTACACATTATAACCAAA+AGG + chr3_3:7959059-7959078 Msa0440500:CDS 25.0%
! TCTACACATTATAACCAAAA+GGG + chr3_3:7959060-7959079 Msa0440500:CDS 25.0%
! TTGAATAGATAACAAAGACA+TGG - chr3_3:7959397-7959416 None:intergenic 25.0%
! CAAAATGATATTCCTGTTTA+TGG + chr3_3:7959522-7959541 Msa0440500:CDS 25.0%
!!! TTAAATGGAAGGTTGATAAT+TGG - chr3_3:7959600-7959619 None:intergenic 25.0%
!!! GAAGATTCTCTCTTTTAAAA+TGG - chr3_3:7959658-7959677 None:intergenic 25.0%
! AATCTTTATCAGCATTAGTT+TGG + chr3_3:7959757-7959776 Msa0440500:CDS 25.0%
! TGCAAATCATGATAATAAAG+TGG + chr3_3:7959983-7960002 Msa0440500:CDS 25.0%
! AATACGTATGGAAATGAATT+TGG + chr3_3:7960107-7960126 Msa0440500:CDS 25.0%
!! TATGGAAATGAATTTGGAAT+GGG + chr3_3:7960113-7960132 Msa0440500:CDS 25.0%
!! TGTTGGTTTAGTAATGATGT+TGG - chr3_3:7959102-7959121 None:intergenic 30.0%
ACGAAAACAGTATAAGAATG+AGG - chr3_3:7959231-7959250 None:intergenic 30.0%
! TGCATGAATAAATTTAGCTC+CGG - chr3_3:7959271-7959290 None:intergenic 30.0%
CAATTCACAGAATTAGTAGA+TGG + chr3_3:7959414-7959433 Msa0440500:CDS 30.0%
! TTAGTAGATGGTGTTTTCAT+TGG + chr3_3:7959426-7959445 Msa0440500:CDS 30.0%
CTATAGATTCCACTGAAAAA+TGG - chr3_3:7959680-7959699 None:intergenic 30.0%
TATAGCGAAACTTAAAGCAA+AGG + chr3_3:7959695-7959714 Msa0440500:CDS 30.0%
! CTCTTCCTAAGGAATATTTT+GGG + chr3_3:7959868-7959887 Msa0440500:CDS 30.0%
GAATTCCCAAAATATTCCTT+AGG - chr3_3:7959876-7959895 None:intergenic 30.0%
ATGATAATAAAGTGGTGCTT+AGG + chr3_3:7959991-7960010 Msa0440500:CDS 30.0%
TTTCCATACGTATTAAACCT+CGG - chr3_3:7960101-7960120 None:intergenic 30.0%
GTATGGAAATGAATTTGGAA+TGG + chr3_3:7960112-7960131 Msa0440500:CDS 30.0%
GGATATGCTAACAAATTTGA+TGG + chr3_3:7960158-7960177 Msa0440500:CDS 30.0%
GGAAAAGTAATTTCATATCC+AGG + chr3_3:7960179-7960198 Msa0440500:CDS 30.0%
!! TGTTGGTTTAGTAATGATGT+TGG - chr3_3:7959102-7959121 None:intergenic 30.0%
ACGAAAACAGTATAAGAATG+AGG - chr3_3:7959231-7959250 None:intergenic 30.0%
! TGCATGAATAAATTTAGCTC+CGG - chr3_3:7959271-7959290 None:intergenic 30.0%
CAATTCACAGAATTAGTAGA+TGG + chr3_3:7959414-7959433 Msa0440500:CDS 30.0%
! TTAGTAGATGGTGTTTTCAT+TGG + chr3_3:7959426-7959445 Msa0440500:CDS 30.0%
CTATAGATTCCACTGAAAAA+TGG - chr3_3:7959680-7959699 None:intergenic 30.0%
TATAGCGAAACTTAAAGCAA+AGG + chr3_3:7959695-7959714 Msa0440500:CDS 30.0%
! CTCTTCCTAAGGAATATTTT+GGG + chr3_3:7959868-7959887 Msa0440500:CDS 30.0%
GAATTCCCAAAATATTCCTT+AGG - chr3_3:7959876-7959895 None:intergenic 30.0%
ATGATAATAAAGTGGTGCTT+AGG + chr3_3:7959991-7960010 Msa0440500:CDS 30.0%
TTTCCATACGTATTAAACCT+CGG - chr3_3:7960101-7960120 None:intergenic 30.0%
GTATGGAAATGAATTTGGAA+TGG + chr3_3:7960112-7960131 Msa0440500:CDS 30.0%
GGATATGCTAACAAATTTGA+TGG + chr3_3:7960158-7960177 Msa0440500:CDS 30.0%
GGAAAAGTAATTTCATATCC+AGG + chr3_3:7960179-7960198 Msa0440500:CDS 30.0%
ACATGCAGAAACGATGTTTA+GGG - chr3_3:7958965-7958984 None:intergenic 35.0%
AACATGCAGAAACGATGTTT+AGG - chr3_3:7958966-7958985 None:intergenic 35.0%
!! TTTGGTTTGAGTCTTCGATT+GGG - chr3_3:7959005-7959024 None:intergenic 35.0%
!! ATTTGGTTTGAGTCTTCGAT+TGG - chr3_3:7959006-7959025 None:intergenic 35.0%
!! TTTTGAAGAGAAGTCCCTTT+TGG - chr3_3:7959077-7959096 None:intergenic 35.0%
GGTTCTCTATGAAATGTTGT+TGG - chr3_3:7959119-7959138 None:intergenic 35.0%
ACAACATTTCATAGAGAACC+TGG + chr3_3:7959119-7959138 Msa0440500:CDS 35.0%
! ATAGAAATGGAAAAGCGTGA+GGG - chr3_3:7959169-7959188 None:intergenic 35.0%
! GCATGAATAAATTTAGCTCC+GGG - chr3_3:7959270-7959289 None:intergenic 35.0%
TCAAAGAACGATTGGACAAT+GGG - chr3_3:7959342-7959361 None:intergenic 35.0%
ATCAAAGAACGATTGGACAA+TGG - chr3_3:7959343-7959362 None:intergenic 35.0%
TGTCATGATCAAAGAACGAT+TGG - chr3_3:7959350-7959369 None:intergenic 35.0%
ATCACAGAGACAATGATTCA+TGG - chr3_3:7959457-7959476 None:intergenic 35.0%
ATGAATCATTGTCTCTGTGA+TGG + chr3_3:7959456-7959475 Msa0440500:CDS 35.0%
! TCTGTGATGGAACATCTTAT+TGG + chr3_3:7959469-7959488 Msa0440500:CDS 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG - chr3_3:7959549-7959568 None:intergenic 35.0%
ATCAACCTATCCACAATAGA+TGG + chr3_3:7959556-7959575 Msa0440500:CDS 35.0%
ATAATTGGACCATAACCTTC+TGG - chr3_3:7959585-7959604 None:intergenic 35.0%
! AACTCGTGGTGATGTTTAAA+TGG - chr3_3:7959615-7959634 None:intergenic 35.0%
!! GAGAATCTTCCATTTTTCAG+TGG + chr3_3:7959668-7959687 Msa0440500:CDS 35.0%
TCAGAGAACAACTTGCAAAA+TGG + chr3_3:7959815-7959834 Msa0440500:CDS 35.0%
TACAAACAACCGAACAAGAA+TGG + chr3_3:7959839-7959858 Msa0440500:CDS 35.0%
AAATATTCCTTAGGAAGAGG+TGG - chr3_3:7959867-7959886 None:intergenic 35.0%
CCAAAATATTCCTTAGGAAG+AGG - chr3_3:7959870-7959889 None:intergenic 35.0%
! CCTCTTCCTAAGGAATATTT+TGG + chr3_3:7959867-7959886 Msa0440500:CDS 35.0%
TAATAAAGTGGTGCTTAGGT+CGG + chr3_3:7959995-7960014 Msa0440500:CDS 35.0%
CCACTTATCATCACAGTATA+AGG - chr3_3:7960074-7960093 None:intergenic 35.0%
CCTTATACTGTGATGATAAG+TGG + chr3_3:7960071-7960090 Msa0440500:CDS 35.0%
! ATTTGGAATGGGAAAAGCTT+TGG + chr3_3:7960124-7960143 Msa0440500:CDS 35.0%
ATTTCATATCCAGGTCAAGA+AGG + chr3_3:7960188-7960207 Msa0440500:CDS 35.0%
TCTTTCACCTGAGAAAATGA+TGG + chr3_3:7960238-7960257 Msa0440500:CDS 35.0%
ACATGCAGAAACGATGTTTA+GGG - chr3_3:7958965-7958984 None:intergenic 35.0%
AACATGCAGAAACGATGTTT+AGG - chr3_3:7958966-7958985 None:intergenic 35.0%
!! TTTGGTTTGAGTCTTCGATT+GGG - chr3_3:7959005-7959024 None:intergenic 35.0%
!! ATTTGGTTTGAGTCTTCGAT+TGG - chr3_3:7959006-7959025 None:intergenic 35.0%
!! TTTTGAAGAGAAGTCCCTTT+TGG - chr3_3:7959077-7959096 None:intergenic 35.0%
GGTTCTCTATGAAATGTTGT+TGG - chr3_3:7959119-7959138 None:intergenic 35.0%
ACAACATTTCATAGAGAACC+TGG + chr3_3:7959119-7959138 Msa0440500:CDS 35.0%
! ATAGAAATGGAAAAGCGTGA+GGG - chr3_3:7959169-7959188 None:intergenic 35.0%
! GCATGAATAAATTTAGCTCC+GGG - chr3_3:7959270-7959289 None:intergenic 35.0%
TCAAAGAACGATTGGACAAT+GGG - chr3_3:7959342-7959361 None:intergenic 35.0%
ATCAAAGAACGATTGGACAA+TGG - chr3_3:7959343-7959362 None:intergenic 35.0%
TGTCATGATCAAAGAACGAT+TGG - chr3_3:7959350-7959369 None:intergenic 35.0%
ATCACAGAGACAATGATTCA+TGG - chr3_3:7959457-7959476 None:intergenic 35.0%
ATGAATCATTGTCTCTGTGA+TGG + chr3_3:7959456-7959475 Msa0440500:CDS 35.0%
! TCTGTGATGGAACATCTTAT+TGG + chr3_3:7959469-7959488 Msa0440500:CDS 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG - chr3_3:7959549-7959568 None:intergenic 35.0%
ATCAACCTATCCACAATAGA+TGG + chr3_3:7959556-7959575 Msa0440500:CDS 35.0%
ATAATTGGACCATAACCTTC+TGG - chr3_3:7959585-7959604 None:intergenic 35.0%
! AACTCGTGGTGATGTTTAAA+TGG - chr3_3:7959615-7959634 None:intergenic 35.0%
!! GAGAATCTTCCATTTTTCAG+TGG + chr3_3:7959668-7959687 Msa0440500:CDS 35.0%
TCAGAGAACAACTTGCAAAA+TGG + chr3_3:7959815-7959834 Msa0440500:CDS 35.0%
TACAAACAACCGAACAAGAA+TGG + chr3_3:7959839-7959858 Msa0440500:CDS 35.0%
AAATATTCCTTAGGAAGAGG+TGG - chr3_3:7959867-7959886 None:intergenic 35.0%
CCAAAATATTCCTTAGGAAG+AGG - chr3_3:7959870-7959889 None:intergenic 35.0%
! CCTCTTCCTAAGGAATATTT+TGG + chr3_3:7959867-7959886 Msa0440500:CDS 35.0%
TAATAAAGTGGTGCTTAGGT+CGG + chr3_3:7959995-7960014 Msa0440500:CDS 35.0%
CCACTTATCATCACAGTATA+AGG - chr3_3:7960074-7960093 None:intergenic 35.0%
CCTTATACTGTGATGATAAG+TGG + chr3_3:7960071-7960090 Msa0440500:CDS 35.0%
! ATTTGGAATGGGAAAAGCTT+TGG + chr3_3:7960124-7960143 Msa0440500:CDS 35.0%
ATTTCATATCCAGGTCAAGA+AGG + chr3_3:7960188-7960207 Msa0440500:CDS 35.0%
TCTTTCACCTGAGAAAATGA+TGG + chr3_3:7960238-7960257 Msa0440500:CDS 35.0%
CAGAAACGATGTTTAGGGAA+GGG - chr3_3:7958960-7958979 None:intergenic 40.0%
! TTGGTTTGAGTCTTCGATTG+GGG - chr3_3:7959004-7959023 None:intergenic 40.0%
ACATTTCATAGAGAACCTGG+TGG + chr3_3:7959122-7959141 Msa0440500:CDS 40.0%
! GATAGAAATGGAAAAGCGTG+AGG - chr3_3:7959170-7959189 None:intergenic 40.0%
TGTGAAATGGGACCATAAAC+AGG - chr3_3:7959537-7959556 None:intergenic 40.0%
!! GTGGATAGGTTGATGTGAAA+TGG - chr3_3:7959550-7959569 None:intergenic 40.0%
GGAAACCATCTATTGTGGAT+AGG - chr3_3:7959564-7959583 None:intergenic 40.0%
! CTTCTGGAAACCATCTATTG+TGG - chr3_3:7959569-7959588 None:intergenic 40.0%
CACAATAGATGGTTTCCAGA+AGG + chr3_3:7959567-7959586 Msa0440500:CDS 40.0%
AGATGGTTTCCAGAAGGTTA+TGG + chr3_3:7959573-7959592 Msa0440500:CDS 40.0%
! CGTGGTGATGTTTAAATGGA+AGG - chr3_3:7959611-7959630 None:intergenic 40.0%
CATATGTGTGAACAAACTCG+TGG - chr3_3:7959629-7959648 None:intergenic 40.0%
! CACGAGTTTGTTCACACATA+TGG + chr3_3:7959627-7959646 Msa0440500:CDS 40.0%
GAGTTGCTAGAGAATGATCT+AGG + chr3_3:7959930-7959949 Msa0440500:CDS 40.0%
TGCTAGAGAATGATCTAGGA+TGG + chr3_3:7959934-7959953 Msa0440500:CDS 40.0%
! GCTAGAGAATGATCTAGGAT+GGG + chr3_3:7959935-7959954 Msa0440500:CDS 40.0%
TCACCGAGGTTTAATACGTA+TGG + chr3_3:7960095-7960114 Msa0440500:CDS 40.0%
! AAAGCTTTGGCAGTTAGAAG+TGG + chr3_3:7960137-7960156 Msa0440500:CDS 40.0%
CAGAAACGATGTTTAGGGAA+GGG - chr3_3:7958960-7958979 None:intergenic 40.0%
! TTGGTTTGAGTCTTCGATTG+GGG - chr3_3:7959004-7959023 None:intergenic 40.0%
ACATTTCATAGAGAACCTGG+TGG + chr3_3:7959122-7959141 Msa0440500:CDS 40.0%
! GATAGAAATGGAAAAGCGTG+AGG - chr3_3:7959170-7959189 None:intergenic 40.0%
TGTGAAATGGGACCATAAAC+AGG - chr3_3:7959537-7959556 None:intergenic 40.0%
!! GTGGATAGGTTGATGTGAAA+TGG - chr3_3:7959550-7959569 None:intergenic 40.0%
GGAAACCATCTATTGTGGAT+AGG - chr3_3:7959564-7959583 None:intergenic 40.0%
! CTTCTGGAAACCATCTATTG+TGG - chr3_3:7959569-7959588 None:intergenic 40.0%
CACAATAGATGGTTTCCAGA+AGG + chr3_3:7959567-7959586 Msa0440500:CDS 40.0%
AGATGGTTTCCAGAAGGTTA+TGG + chr3_3:7959573-7959592 Msa0440500:CDS 40.0%
! CGTGGTGATGTTTAAATGGA+AGG - chr3_3:7959611-7959630 None:intergenic 40.0%
CATATGTGTGAACAAACTCG+TGG - chr3_3:7959629-7959648 None:intergenic 40.0%
! CACGAGTTTGTTCACACATA+TGG + chr3_3:7959627-7959646 Msa0440500:CDS 40.0%
GAGTTGCTAGAGAATGATCT+AGG + chr3_3:7959930-7959949 Msa0440500:CDS 40.0%
TGCTAGAGAATGATCTAGGA+TGG + chr3_3:7959934-7959953 Msa0440500:CDS 40.0%
! GCTAGAGAATGATCTAGGAT+GGG + chr3_3:7959935-7959954 Msa0440500:CDS 40.0%
TCACCGAGGTTTAATACGTA+TGG + chr3_3:7960095-7960114 Msa0440500:CDS 40.0%
! AAAGCTTTGGCAGTTAGAAG+TGG + chr3_3:7960137-7960156 Msa0440500:CDS 40.0%
GCAGAAACGATGTTTAGGGA+AGG - chr3_3:7958961-7958980 None:intergenic 45.0%
TGGTTTGAGTCTTCGATTGG+GGG - chr3_3:7959003-7959022 None:intergenic 45.0%
AGTGTTTCAGTTTGTCCACC+AGG - chr3_3:7959140-7959159 None:intergenic 45.0%
! ATGGAAAAGCGTGAGGGAAA+GGG - chr3_3:7959163-7959182 None:intergenic 45.0%
! AATGGAAAAGCGTGAGGGAA+AGG - chr3_3:7959164-7959183 None:intergenic 45.0%
TTCCATTTCTATCCCCTCTC+AGG + chr3_3:7959177-7959196 Msa0440500:CDS 45.0%
AGTAACAAGACGACCTGAGA+GGG - chr3_3:7959193-7959212 None:intergenic 45.0%
TAGTAACAAGACGACCTGAG+AGG - chr3_3:7959194-7959213 None:intergenic 45.0%
GTCGATTGCAAAAACAGTCC+CGG + chr3_3:7959249-7959268 Msa0440500:CDS 45.0%
GGGGGTGAGGATATCATTTA+TGG - chr3_3:7959307-7959326 None:intergenic 45.0%
ACAATGGGTGGGACATCAAT+GGG - chr3_3:7959327-7959346 None:intergenic 45.0%
AGAACGATTGGACAATGGGT+GGG - chr3_3:7959338-7959357 None:intergenic 45.0%
AAGAACGATTGGACAATGGG+TGG - chr3_3:7959339-7959358 None:intergenic 45.0%
GACAAAGCAGTCAACCATGA+TGG + chr3_3:7959366-7959385 Msa0440500:CDS 45.0%
AAGACATGGTGTGACCATCA+TGG - chr3_3:7959383-7959402 None:intergenic 45.0%
GAGGTGGTTCCATTCTTGTT+CGG - chr3_3:7959851-7959870 None:intergenic 45.0%
AATGGAACCACCTCTTCCTA+AGG + chr3_3:7959857-7959876 Msa0440500:CDS 45.0%
!! TGTAGTGAGTGCTGAAACGA+CGG + chr3_3:7959902-7959921 Msa0440500:CDS 45.0%
GGCAGCATGGAAAATTCATG+TGG + chr3_3:7959956-7959975 Msa0440500:CDS 45.0%
TGATGATAAGTGGTTCACCG+AGG + chr3_3:7960081-7960100 Msa0440500:CDS 45.0%
TCATATCCAGGTCAAGAAGG+AGG + chr3_3:7960191-7960210 Msa0440500:CDS 45.0%
! ACCTGAGAAAATGATGGTGC+TGG + chr3_3:7960244-7960263 Msa0440500:CDS 45.0%
! TCCAGCACCATCATTTTCTC+AGG - chr3_3:7960248-7960267 None:intergenic 45.0%
GCAGAAACGATGTTTAGGGA+AGG - chr3_3:7958961-7958980 None:intergenic 45.0%
TGGTTTGAGTCTTCGATTGG+GGG - chr3_3:7959003-7959022 None:intergenic 45.0%
AGTGTTTCAGTTTGTCCACC+AGG - chr3_3:7959140-7959159 None:intergenic 45.0%
! ATGGAAAAGCGTGAGGGAAA+GGG - chr3_3:7959163-7959182 None:intergenic 45.0%
! AATGGAAAAGCGTGAGGGAA+AGG - chr3_3:7959164-7959183 None:intergenic 45.0%
TTCCATTTCTATCCCCTCTC+AGG + chr3_3:7959177-7959196 Msa0440500:CDS 45.0%
AGTAACAAGACGACCTGAGA+GGG - chr3_3:7959193-7959212 None:intergenic 45.0%
TAGTAACAAGACGACCTGAG+AGG - chr3_3:7959194-7959213 None:intergenic 45.0%
GTCGATTGCAAAAACAGTCC+CGG + chr3_3:7959249-7959268 Msa0440500:CDS 45.0%
GGGGGTGAGGATATCATTTA+TGG - chr3_3:7959307-7959326 None:intergenic 45.0%
ACAATGGGTGGGACATCAAT+GGG - chr3_3:7959327-7959346 None:intergenic 45.0%
AGAACGATTGGACAATGGGT+GGG - chr3_3:7959338-7959357 None:intergenic 45.0%
AAGAACGATTGGACAATGGG+TGG - chr3_3:7959339-7959358 None:intergenic 45.0%
GACAAAGCAGTCAACCATGA+TGG + chr3_3:7959366-7959385 Msa0440500:CDS 45.0%
AAGACATGGTGTGACCATCA+TGG - chr3_3:7959383-7959402 None:intergenic 45.0%
GAGGTGGTTCCATTCTTGTT+CGG - chr3_3:7959851-7959870 None:intergenic 45.0%
AATGGAACCACCTCTTCCTA+AGG + chr3_3:7959857-7959876 Msa0440500:CDS 45.0%
!! TGTAGTGAGTGCTGAAACGA+CGG + chr3_3:7959902-7959921 Msa0440500:CDS 45.0%
GGCAGCATGGAAAATTCATG+TGG + chr3_3:7959956-7959975 Msa0440500:CDS 45.0%
TGATGATAAGTGGTTCACCG+AGG + chr3_3:7960081-7960100 Msa0440500:CDS 45.0%
TCATATCCAGGTCAAGAAGG+AGG + chr3_3:7960191-7960210 Msa0440500:CDS 45.0%
! ACCTGAGAAAATGATGGTGC+TGG + chr3_3:7960244-7960263 Msa0440500:CDS 45.0%
! TCCAGCACCATCATTTTCTC+AGG - chr3_3:7960248-7960267 None:intergenic 45.0%
GAGTCTTCGATTGGGGGATA+TGG - chr3_3:7958997-7959016 None:intergenic 50.0%
GACCTGAGAGGGGATAGAAA+TGG - chr3_3:7959182-7959201 None:intergenic 50.0%
GTAACAAGACGACCTGAGAG+GGG - chr3_3:7959192-7959211 None:intergenic 50.0%
AATGGGTGGGACATCAATGG+GGG - chr3_3:7959325-7959344 None:intergenic 50.0%
CAATGGGTGGGACATCAATG+GGG - chr3_3:7959326-7959345 None:intergenic 50.0%
GACAATGGGTGGGACATCAA+TGG - chr3_3:7959328-7959347 None:intergenic 50.0%
! TCATGCACGTCGACTACAAC+AGG + chr3_3:7959791-7959810 Msa0440500:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG + chr3_3:7959943-7959962 Msa0440500:CDS 50.0%
TGCTTAGGTCGGTTGAAGAG+TGG + chr3_3:7960006-7960025 Msa0440500:CDS 50.0%
TATCCAGGTCAAGAAGGAGG+AGG + chr3_3:7960194-7960213 Msa0440500:CDS 50.0%
ATCCAGGTCAAGAAGGAGGA+GGG + chr3_3:7960195-7960214 Msa0440500:CDS 50.0%
GAGTCTTCGATTGGGGGATA+TGG - chr3_3:7958997-7959016 None:intergenic 50.0%
GACCTGAGAGGGGATAGAAA+TGG - chr3_3:7959182-7959201 None:intergenic 50.0%
GTAACAAGACGACCTGAGAG+GGG - chr3_3:7959192-7959211 None:intergenic 50.0%
AATGGGTGGGACATCAATGG+GGG - chr3_3:7959325-7959344 None:intergenic 50.0%
CAATGGGTGGGACATCAATG+GGG - chr3_3:7959326-7959345 None:intergenic 50.0%
GACAATGGGTGGGACATCAA+TGG - chr3_3:7959328-7959347 None:intergenic 50.0%
! TCATGCACGTCGACTACAAC+AGG + chr3_3:7959791-7959810 Msa0440500:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG + chr3_3:7959943-7959962 Msa0440500:CDS 50.0%
TGCTTAGGTCGGTTGAAGAG+TGG + chr3_3:7960006-7960025 Msa0440500:CDS 50.0%
TATCCAGGTCAAGAAGGAGG+AGG + chr3_3:7960194-7960213 Msa0440500:CDS 50.0%
ATCCAGGTCAAGAAGGAGGA+GGG + chr3_3:7960195-7960214 Msa0440500:CDS 50.0%
!! GTGAGTGCTGAAACGACGGT+AGG + chr3_3:7959906-7959925 Msa0440500:CDS 55.0%
!! GTGAGTGCTGAAACGACGGT+AGG + chr3_3:7959906-7959925 Msa0440500:CDS 55.0%
GTGGGACATCAATGGGGGTG+AGG - chr3_3:7959320-7959339 None:intergenic 60.0%
CTCCCTCCTCCTTCTTGACC+TGG - chr3_3:7960200-7960219 None:intergenic 60.0%
GTGGGACATCAATGGGGGTG+AGG - chr3_3:7959320-7959339 None:intergenic 60.0%
CTCCCTCCTCCTTCTTGACC+TGG - chr3_3:7960200-7960219 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 7958949 7960319 7958949 ID=Msa0440500;Name=Msa0440500
chr3_3 mRNA 7958949 7960319 7958949 ID=Msa0440500-mRNA-1;Parent=Msa0440500;Name=Msa0440500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|456
chr3_3 exon 7958949 7960319 7958949 ID=Msa0440500-mRNA-1:exon:1674;Parent=Msa0440500-mRNA-1
chr3_3 CDS 7958949 7960319 7958949 ID=Msa0440500-mRNA-1:cds;Parent=Msa0440500-mRNA-1
Gene Sequence

>Msa0440500

ATGAGCATCCCTTCCCTAAACATCGTTTCTGCATGTTTCATTAAACCATATCCCCCAATCGAAGACTCAAACCAAATATGTCATTTAACACATTGGGATATTGCCATGTTATCTACACATTATAACCAAAAGGGACTTCTCTTCAAAAAACCAACATCATTACTAAACCAACAACATTTCATAGAGAACCTGGTGGACAAACTGAAACACTCCCTTTCCCTCACGCTTTTCCATTTCTATCCCCTCTCAGGTCGTCTTGTTACTAAAAAATCTGAAGATCCTCATTCTTATACTGTTTTCGTCGATTGCAAAAACAGTCCCGGAGCTAAATTTATTCATGCAACTTTAGATATTACCATAAATGATATCCTCACCCCCATTGATGTCCCACCCATTGTCCAATCGTTCTTTGATCATGACAAAGCAGTCAACCATGATGGTCACACCATGTCTTTGTTATCTATTCAATTCACAGAATTAGTAGATGGTGTTTTCATTGGTTGTTCCATGAATCATTGTCTCTGTGATGGAACATCTTATTGGAATTTCTTCAACACATTTTCTGAGATATTTCAAAATGATATTCCTGTTTATGGTCCCATTTCACATCAACCTATCCACAATAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTTCCATTTAAACATCACCACGAGTTTGTTCACACATATGGAATACCCATTTTAAAAGAGAGAATCTTCCATTTTTCAGTGGAATCTATAGCGAAACTTAAAGCAAAGGCAAATGCAGAGTGTAATACAAACAAAATTTCTTCGTTTCAATCTTTATCAGCATTAGTTTGGAGATCTATAACTCATGCACGTCGACTACAACAGGATCAGAGAACAACTTGCAAAATGGCTACAAACAACCGAACAAGAATGGAACCACCTCTTCCTAAGGAATATTTTGGGAATTCAATTTATGTAGTGAGTGCTGAAACGACGGTAGGAGAGTTGCTAGAGAATGATCTAGGATGGGCAGCATGGAAAATTCATGTGGCTATTGCAAATCATGATAATAAAGTGGTGCTTAGGTCGGTTGAAGAGTGGTTTCGTTCTCCTTTTTTGTATCGATTAGATTTGTTTTTTGATCCTTATACTGTGATGATAAGTGGTTCACCGAGGTTTAATACGTATGGAAATGAATTTGGAATGGGAAAAGCTTTGGCAGTTAGAAGTGGATATGCTAACAAATTTGATGGAAAAGTAATTTCATATCCAGGTCAAGAAGGAGGAGGGAGCATAGATCTTGAAGTGTGTCTTTCACCTGAGAAAATGATGGTGCTGGAGACAGATGAAGAGTTCATGAACTCAGTTTCTGTGTTTAATCCTTTGTTCTAA
Protein sequence

>Msa0440500

MSIPSLNIVSACFIKPYPPIEDSNQICHLTHWDIAMLSTHYNQKGLLFKKPTSLLNQQHFIENLVDKLKHSLSLTLFHFYPLSGRLVTKKSEDPHSYTVFVDCKNSPGAKFIHATLDITINDILTPIDVPPIVQSFFDHDKAVNHDGHTMSLLSIQFTELVDGVFIGCSMNHCLCDGTSYWNFFNTFSEIFQNDIPVYGPISHQPIHNRWFPEGYGPIINLPFKHHHEFVHTYGIPILKERIFHFSVESIAKLKAKANAECNTNKISSFQSLSALVWRSITHARRLQQDQRTTCKMATNNRTRMEPPLPKEYFGNSIYVVSAETTVGELLENDLGWAAWKIHVAIANHDNKVVLRSVEEWFRSPFLYRLDLFFDPYTVMISGSPRFNTYGNEFGMGKALAVRSGYANKFDGKVISYPGQEGGGSIDLEVCLSPEKMMVLETDEEFMNSVSVFNPLF*