AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348880 MtrunA17_Chr3g0134091 86.283 452 62 0 1 452 1 452 0.0 827
Msa0348880 MtrunA17_Chr3g0134101 86.947 452 42 4 1 451 18 453 0.0 801
Msa0348880 MtrunA17_Chr3g0134121 84.292 452 70 1 1 451 1 452 0.0 800
Msa0348880 MtrunA17_Chr3g0134111 78.431 459 91 2 1 455 2 456 0.0 747
Msa0348880 MtrunA17_Chr3g0134061 66.087 460 145 5 5 453 4 463 0.0 622
Msa0348880 MtrunA17_Chr3g0134041 66.374 455 142 4 1 451 2 449 0.0 615
Msa0348880 MtrunA17_Chr3g0134071 64.516 465 141 6 9 454 10 469 0.0 605
Msa0348880 MtrunA17_Chr3g0134131 54.342 403 68 4 1 403 1 287 8.39e-139 406
Msa0348880 MtrunA17_Chr4g0005941 39.000 500 234 11 1 446 1 483 1.41e-94 298
Msa0348880 MtrunA17_Chr3g0113181 37.805 492 230 14 5 450 11 472 2.81e-94 297
Msa0348880 MtrunA17_Chr5g0436621 38.323 501 235 12 1 446 1 482 2.93e-93 295
Msa0348880 MtrunA17_Chr4g0053111 39.083 458 251 11 3 446 1 444 6.94e-91 287
Msa0348880 MtrunA17_Chr4g0010381 38.497 439 243 9 20 447 15 437 9.11e-87 276
Msa0348880 MtrunA17_Chr8g0354371 39.100 422 241 9 29 447 30 438 7.36e-86 274
Msa0348880 MtrunA17_Chr4g0010361 37.727 440 245 11 21 447 16 439 4.15e-85 272
Msa0348880 MtrunA17_Chr8g0359251 38.208 424 246 8 28 447 28 439 1.16e-84 271
Msa0348880 MtrunA17_Chr4g0053081 36.761 457 261 10 3 446 1 442 1.58e-83 268
Msa0348880 MtrunA17_Chr4g0010331 38.889 432 244 9 21 447 16 432 2.03e-83 267
Msa0348880 MtrunA17_Chr4g0010311 37.900 438 246 9 21 447 16 438 1.10e-82 266
Msa0348880 MtrunA17_Chr3g0125001 38.194 432 241 10 23 447 18 430 4.85e-82 264
Msa0348880 MtrunA17_Chr7g0224131 36.758 438 248 10 21 447 16 435 3.50e-81 261
Msa0348880 MtrunA17_Chr4g0053091 35.449 457 252 10 5 446 3 431 9.77e-80 258
Msa0348880 MtrunA17_Chr4g0053061 36.481 466 254 14 8 451 34 479 9.09e-79 256
Msa0348880 MtrunA17_Chr3g0087221 37.757 437 239 11 29 447 24 445 2.00e-78 254
Msa0348880 MtrunA17_Chr8g0374911 36.444 450 246 13 22 451 43 472 2.05e-76 250
Msa0348880 MtrunA17_Chr4g0010121 35.080 439 253 10 23 448 63 482 5.19e-75 247
Msa0348880 MtrunA17_Chr8g0374641 36.971 449 237 17 21 450 21 442 4.22e-72 238
Msa0348880 MtrunA17_Chr2g0311931 94.355 124 7 0 449 572 495 618 4.33e-71 244
Msa0348880 MtrunA17_Chr1g0170011 93.548 124 8 0 449 572 495 618 6.62e-70 241
Msa0348880 MtrunA17_Chr4g0010351 36.111 360 207 8 21 369 16 363 7.36e-63 211
Msa0348880 MtrunA17_Chr2g0311941 85.246 122 18 0 448 569 494 615 1.38e-62 221
Msa0348880 MtrunA17_Chr6g0467861 31.393 481 269 12 5 446 46 504 2.16e-59 206
Msa0348880 MtrunA17_Chr8g0353901 38.278 209 125 3 240 445 20 227 1.44e-39 145
Msa0348880 MtrunA17_Chr4g0001861 26.269 453 288 16 6 440 3 427 1.73e-33 132
Msa0348880 MtrunA17_Chr8g0371821 28.713 404 221 16 68 440 56 423 5.49e-32 128
Msa0348880 MtrunA17_Chr2g0334001 26.290 407 272 13 48 440 34 426 1.98e-30 124
Msa0348880 MtrunA17_Chr8g0353891 35.945 217 128 6 8 223 6 212 1.00e-28 114
Msa0348880 MtrunA17_Chr7g0224121 42.667 150 75 4 42 190 39 178 1.17e-28 113
Msa0348880 MtrunA17_Chr2g0311401 27.178 287 196 5 163 440 14 296 7.60e-27 110
Msa0348880 MtrunA17_Chr8g0386141 29.618 314 190 11 62 361 53 349 8.83e-27 113
Msa0348880 MtrunA17_Chr4g0072041 26.742 445 260 17 19 431 34 444 6.24e-26 111
Msa0348880 MtrunA17_Chr4g0053071 39.860 143 85 1 304 446 1 142 1.13e-25 103
Msa0348880 MtrunA17_Chr6g0456591 36.686 169 96 4 23 190 32 190 1.90e-25 105
Msa0348880 MtrunA17_Chr6g0463321 30.841 214 116 2 205 417 2 184 1.93e-25 103
Msa0348880 MtrunA17_Chr3g0132001 29.739 306 187 12 68 361 66 355 6.23e-25 107
Msa0348880 MtrunA17_Chr1g0165671 26.696 457 259 21 30 448 41 459 1.15e-24 107
Msa0348880 MtrunA17_Chr4g0065151 44.444 126 65 2 436 561 600 720 1.82e-23 105
Msa0348880 MtrunA17_Chr6g0463331 45.217 115 59 3 79 190 45 158 2.38e-23 97.1
Msa0348880 MtrunA17_Chr4g0053051 39.844 128 76 1 319 446 1 127 6.63e-23 94.7
Msa0348880 MtrunA17_Chr6g0470591 30.796 289 178 12 68 344 71 349 1.51e-22 100
Msa0348880 MtrunA17_Chr4g0054081 24.554 448 274 16 29 440 30 449 1.64e-22 100
Msa0348880 MtrunA17_Chr1g0165661 28.610 367 225 17 65 419 61 402 1.88e-22 100
Msa0348880 MtrunA17_Chr5g0433641 25.272 459 289 18 2 436 3 431 1.36e-21 98.2
Msa0348880 MtrunA17_Chr3g0087401 25.622 402 245 15 65 431 51 433 3.61e-21 96.7
Msa0348880 MtrunA17_Chr3g0141851 27.666 347 225 11 65 399 58 390 4.67e-21 96.3
Msa0348880 MtrunA17_Chr7g0253541 26.794 418 254 18 71 451 63 465 2.99e-19 90.9
Msa0348880 MtrunA17_Chr7g0224391 28.496 379 236 15 56 420 56 413 3.07e-19 90.5
Msa0348880 MtrunA17_Chr1g0191081 26.667 390 247 15 65 437 70 437 8.35e-19 89.4
Msa0348880 MtrunA17_Chr7g0273761 26.360 478 287 19 2 448 375 818 1.06e-18 90.5
Msa0348880 MtrunA17_Chr7g0273781 25.503 447 277 20 30 447 57 476 2.06e-18 88.6
Msa0348880 MtrunA17_Chr1g0165681 26.724 348 218 15 13 347 16 339 4.51e-18 87.4
Msa0348880 MtrunA17_Chr7g0219241 25.000 468 294 20 15 441 16 467 4.66e-18 87.4
Msa0348880 MtrunA17_Chr7g0274021 25.945 397 267 11 65 446 60 444 5.08e-17 84.0
Msa0348880 MtrunA17_Chr4g0027071 24.286 280 187 7 68 334 69 336 5.98e-17 84.0
Msa0348880 MtrunA17_Chr1g0165711 27.362 307 196 11 30 325 23 313 7.66e-17 83.2
Msa0348880 MtrunA17_Chr7g0219121 24.885 434 250 17 29 408 28 439 1.69e-16 82.4
Msa0348880 MtrunA17_Chr3g0097841 27.451 204 130 5 242 431 27 226 6.98e-16 77.8
Msa0348880 MtrunA17_Chr6g0454761 25.432 405 255 15 60 436 58 443 1.63e-15 80.5
Msa0348880 MtrunA17_Chr6g0454761 25.532 423 249 17 55 439 540 934 1.89e-11 67.4
Msa0348880 MtrunA17_Chr7g0224101 33.607 122 72 1 219 331 13 134 8.90e-15 72.0
Msa0348880 MtrunA17_Chr2g0283361 25.434 346 223 13 71 401 61 386 9.62e-15 77.0
Msa0348880 MtrunA17_Chr3g0097851 36.082 97 57 2 252 344 8 103 2.06e-14 70.1
Msa0348880 MtrunA17_Chr7g0253501 23.810 420 263 16 50 431 41 441 3.04e-14 75.5
Msa0348880 MtrunA17_Chr3g0087901 23.418 474 298 19 6 439 8 456 9.06e-13 70.9
Msa0348880 MtrunA17_Chr7g0219181 22.940 449 292 18 29 436 29 464 1.02e-12 70.5
Msa0348880 MtrunA17_Chr3g0106721 26.182 275 184 7 68 331 68 334 1.37e-12 70.1
Msa0348880 MtrunA17_Chr3g0106741 27.660 188 115 5 160 334 132 311 4.55e-12 68.6
Msa0348880 MtrunA17_Chr7g0235531 22.691 379 247 14 6 361 4 359 1.02e-11 67.4
Msa0348880 MtrunA17_Chr4g0066951 30.625 160 87 4 453 589 547 705 1.32e-11 67.8
Msa0348880 MtrunA17_Chr5g0442701 22.997 387 240 17 48 399 49 412 1.38e-11 67.0
Msa0348880 MtrunA17_Chr5g0442691 22.222 387 243 16 48 399 72 435 6.09e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348880 AT5G42830.1 56.335 442 177 4 13 447 14 446 4.97e-179 514
Msa0348880 AT5G07850.1 52.561 449 212 1 6 453 8 456 1.05e-168 488
Msa0348880 AT5G07860.1 53.437 451 198 6 2 447 3 446 2.96e-161 468
Msa0348880 AT5G07870.1 50.549 455 208 3 6 447 8 458 2.76e-158 461
Msa0348880 AT5G67150.1 39.421 449 249 12 8 446 7 442 2.49e-98 307
Msa0348880 AT2G39980.1 39.829 467 213 10 29 446 29 476 1.08e-96 304
Msa0348880 AT5G01210.1 38.223 484 240 12 3 446 1 465 1.23e-86 277
Msa0348880 AT3G50270.1 35.886 457 267 12 8 452 8 450 1.05e-81 264
Msa0348880 AT3G50280.1 35.604 455 272 11 3 449 1 442 2.90e-79 257
Msa0348880 AT3G50300.1 35.321 436 259 12 6 432 4 425 3.72e-75 246
Msa0348880 AT5G38130.1 35.080 439 254 12 6 432 24 443 9.31e-70 233
Msa0348880 AT5G67160.1 35.071 422 248 11 28 445 28 427 2.82e-67 225
Msa0348880 AT1G56070.3 92.500 120 9 0 449 568 495 614 1.40e-66 233
Msa0348880 AT1G56070.2 92.500 120 9 0 449 568 495 614 1.40e-66 233
Msa0348880 AT1G56070.1 92.500 120 9 0 449 568 495 614 1.40e-66 233
Msa0348880 AT5G23940.1 33.478 460 277 12 6 448 3 450 2.66e-63 216
Msa0348880 AT3G12915.2 88.235 119 13 1 450 568 442 559 8.29e-61 216
Msa0348880 AT3G50280.2 38.387 310 180 6 146 449 8 312 2.77e-56 192
Msa0348880 AT3G50290.1 37.452 259 149 6 147 396 15 269 4.29e-41 150
Msa0348880 AT5G48930.1 26.190 462 277 16 6 440 3 427 2.76e-33 132
Msa0348880 AT2G19070.1 27.716 451 259 18 19 436 24 440 1.24e-31 128
Msa0348880 AT5G41040.2 29.379 354 213 13 62 399 63 395 3.22e-27 115
Msa0348880 AT5G41040.1 29.379 354 213 13 62 399 79 411 6.06e-27 114
Msa0348880 AT1G06220.1 43.548 124 65 2 438 561 601 719 8.32e-23 103
Msa0348880 AT1G06220.3 43.548 124 65 2 438 561 601 719 8.32e-23 103
Msa0348880 AT1G06220.2 43.548 124 65 2 438 561 601 719 8.32e-23 103
Msa0348880 AT3G48720.1 29.341 334 193 15 18 334 18 325 8.84e-23 101
Msa0348880 AT5G25230.2 43.548 124 65 2 438 561 587 705 9.49e-23 103
Msa0348880 AT5G25230.1 43.548 124 65 2 438 561 587 705 9.49e-23 103
Msa0348880 AT5G63560.1 26.382 398 243 15 62 440 55 421 1.16e-19 92.4
Msa0348880 AT1G31490.1 27.384 409 248 19 58 445 52 432 1.09e-18 89.4
Msa0348880 AT5G57840.1 25.217 460 280 18 6 436 3 427 2.18e-18 88.6
Msa0348880 AT2G40230.1 26.385 379 212 15 63 409 54 397 3.06e-18 87.8
Msa0348880 AT1G65450.1 27.483 302 180 12 56 335 60 344 7.25e-18 87.0
Msa0348880 AT1G28680.2 25.086 291 199 10 71 353 65 344 5.49e-17 83.6
Msa0348880 AT1G28680.1 25.086 291 199 10 71 353 65 344 8.11e-17 83.6
Msa0348880 AT1G27620.1 27.129 317 179 11 68 358 58 348 1.40e-15 79.7
Msa0348880 AT2G25150.1 26.205 332 207 14 61 374 60 371 6.06e-15 77.8
Msa0348880 AT1G78990.1 22.977 309 197 12 48 342 52 333 1.13e-14 77.0
Msa0348880 AT3G03480.1 26.061 330 208 15 30 342 33 343 2.86e-14 75.9
Msa0348880 AT5G16410.1 23.410 393 246 15 66 431 89 453 6.66e-13 71.6
Msa0348880 AT1G03390.1 23.902 410 243 18 56 431 67 441 8.52e-13 71.2
Msa0348880 AT1G65450.3 27.128 188 111 6 166 335 1 180 1.38e-11 66.2
Msa0348880 AT5G39090.1 22.609 460 309 16 4 439 3 439 1.84e-11 67.0

Find 149 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTAAGGAATATTT+TGG 0.093791 3_1:+11811439 Msa0348880:CDS
CAAAATGATATTCCTGTTTA+TGG 0.111562 3_1:+11811094 Msa0348880:CDS
AATACGTATGGAAATGAATT+TGG 0.183687 3_1:+11811679 Msa0348880:CDS
TTAAATGGAAGGTTGATAAT+TGG 0.249266 3_1:-11811169 None:intergenic
TCCCTTCTTGTCCCACTCTT+GGG 0.266237 3_1:-11816541 None:intergenic
TTCCCTTCTTGTCCCACTCT+TGG 0.270224 3_1:-11816542 None:intergenic
GATCTGTTTGAAGGATTTAC+AGG 0.281929 3_1:+11816321 Msa0348880:CDS
AACTCGTGGTGATGTTTAAA+TGG 0.296206 3_1:-11811184 None:intergenic
AATCTTTATCAGCATTAGTT+TGG 0.307683 3_1:+11811329 Msa0348880:CDS
CCACTTATCATCACAGTATA+AGG 0.318537 3_1:-11811643 None:intergenic
CACGAGTTTGTTCACACATA+TGG 0.341216 3_1:+11811199 Msa0348880:CDS
AATGTGTTAAATGACATATT+TGG 0.351013 3_1:-11810592 None:intergenic
ATAATTGGACCATAACCTTC+TGG 0.355852 3_1:-11811154 None:intergenic
AACCCGTTTGACCCAGATCT+TGG 0.377234 3_1:-11816587 None:intergenic
AACATGCAGAAACGATGTTT+AGG 0.378660 3_1:-11810535 None:intergenic
CCACTCTTGGGGTCATCCCT+TGG 0.382359 3_1:-11816529 None:intergenic
TACAATCTGTTGTGCTTGTT+GGG 0.386039 3_1:-11816445 None:intergenic
GTTTGTACTATTGAGGAGTC+TGG 0.388255 3_1:+11816259 Msa0348880:CDS
ACAATGGGTGGGACATCAAT+GGG 0.389297 3_1:-11810896 None:intergenic
TCTGTGATGGAACATCTTAT+TGG 0.391840 3_1:+11811041 Msa0348880:CDS
TCAGAGAACAACTTGCAAAA+TGG 0.392004 3_1:+11811387 Msa0348880:CDS
GGATTTACAGGATGATTTCA+TGG 0.397306 3_1:+11816333 Msa0348880:CDS
GTACAATCTGTTGTGCTTGT+TGG 0.399465 3_1:-11816446 None:intergenic
GTCTCTCTGAAGGACACAAC+AGG 0.403756 3_1:-11816382 None:intergenic
GGATATGCTAACAAATTTGA+TGG 0.406437 3_1:+11811730 Msa0348880:CDS
CTCCCTCCTCCTTCTTGACC+TGG 0.408040 3_1:-11811769 None:intergenic
TCATCTTGAGATCTGTTTGA+AGG 0.410842 3_1:+11816312 Msa0348880:CDS
AGATGGTTTCCAGAAGGTTA+TGG 0.413058 3_1:+11811145 Msa0348880:CDS
TTCCATTTCTATCCCCTCTC+AGG 0.415536 3_1:+11810749 Msa0348880:CDS
GTGGATAGGTTGATGTGAAA+TGG 0.419118 3_1:-11811119 None:intergenic
TCCTATTGTGCCCTCATCAA+TGG 0.419375 3_1:-11816506 None:intergenic
CAATTCACAGAATTAGTAGA+TGG 0.423886 3_1:+11810986 Msa0348880:CDS
ATCTACACATTATAACCAAA+AGG 0.424756 3_1:+11810631 Msa0348880:CDS
ATTTGGAATGGGAAAAGCTT+TGG 0.427618 3_1:+11811696 Msa0348880:CDS
AATATGTCATTTAACACATT+GGG 0.429631 3_1:+11810595 Msa0348880:CDS
TATGGTTGTTTGTACTATTG+AGG 0.430770 3_1:+11816252 Msa0348880:CDS
GCCATTGATGAGGGCACAAT+AGG 0.431150 3_1:+11816505 Msa0348880:CDS
ACATGCAGAAACGATGTTTA+GGG 0.431483 3_1:-11810534 None:intergenic
ATCAACCTATCCACAATAGA+TGG 0.431811 3_1:+11811128 Msa0348880:CDS
ATTTGGTTTGAGTCTTCGAT+TGG 0.434962 3_1:-11810575 None:intergenic
GCTTCAGATCTTCCTAAGCT+TGG 0.440212 3_1:+11816196 Msa0348880:CDS
TGTGAAATGGGACCATAAAC+AGG 0.441469 3_1:-11811106 None:intergenic
ATCACAGAGACAATGATTCA+TGG 0.442497 3_1:-11811026 None:intergenic
TTTGGTTTGAGTCTTCGATT+GGG 0.443458 3_1:-11810574 None:intergenic
TCATGCACGTCGACTACAAC+AGG 0.443590 3_1:+11811363 Msa0348880:CDS
TGCATGAATAAATTTAGCTC+CGG 0.444458 3_1:-11810840 None:intergenic
AATGGAAAAGCGTGAGGGAA+AGG 0.449937 3_1:-11810733 None:intergenic
CCCTTCTTGTCCCACTCTTG+GGG 0.458507 3_1:-11816540 None:intergenic
TATGGAAATGAATTTGGAAT+GGG 0.460328 3_1:+11811685 Msa0348880:CDS
ATGGAAAAGCGTGAGGGAAA+GGG 0.461186 3_1:-11810732 None:intergenic
AGGCCAAGATCTGGGTCAAA+CGG 0.463749 3_1:+11816584 Msa0348880:CDS
GGTTCTCTATGAAATGTTGT+TGG 0.465501 3_1:-11810688 None:intergenic
GACAATGGGTGGGACATCAA+TGG 0.465845 3_1:-11810897 None:intergenic
TCAAAGAACGATTGGACAAT+GGG 0.466912 3_1:-11810911 None:intergenic
GAGGTGGTTCCATTCTTGTT+CGG 0.467336 3_1:-11811420 None:intergenic
CCAAAATATTCCTTAGGAAG+AGG 0.467793 3_1:-11811439 None:intergenic
ATGATAATAAAGTGGTGCTT+AGG 0.471109 3_1:+11811563 Msa0348880:CDS
GGCCAAGATCTGGGTCAAAC+GGG 0.473953 3_1:+11816585 Msa0348880:CDS
GAGTTGCTAGAGAATGATCT+AGG 0.474371 3_1:+11811502 Msa0348880:CDS
GAATTCCCAAAATATTCCTT+AGG 0.477642 3_1:-11811445 None:intergenic
TCTGGGTCAAACGGGTTTGA+AGG 0.478445 3_1:+11816593 Msa0348880:CDS
GGAAAAGTAATTTCATATCC+AGG 0.482689 3_1:+11811751 Msa0348880:CDS
TCACCGAGGTTTAATACGTA+TGG 0.489403 3_1:+11811667 Msa0348880:CDS
AAATATGTCATTTAACACAT+TGG 0.493987 3_1:+11810594 Msa0348880:CDS
TCTGGAGAACACATTGTTGC+TGG 0.495917 3_1:+11816277 Msa0348880:CDS
TTGAGACCTTCACCAAGCTT+AGG 0.502277 3_1:-11816208 None:intergenic
TCTTGCTAAGTCAGATCCTA+TGG 0.502729 3_1:+11816234 Msa0348880:CDS
AGTGTTTCAGTTTGTCCACC+AGG 0.507243 3_1:-11810709 None:intergenic
ACCCCAAGAGTGGGACAAGA+AGG 0.508065 3_1:+11816539 Msa0348880:CDS
TGTTGGTTTAGTAATGATGT+TGG 0.510991 3_1:-11810671 None:intergenic
CAATGGGTGGGACATCAATG+GGG 0.513002 3_1:-11810895 None:intergenic
TGCTAGAGAATGATCTAGGA+TGG 0.520529 3_1:+11811506 Msa0348880:CDS
TGCAAATCATGATAATAAAG+TGG 0.522035 3_1:+11811555 Msa0348880:CDS
ACCTGAGAAAATGATGGTGC+TGG 0.523005 3_1:+11811816 Msa0348880:CDS
CAAGCACAACAGATTGTACA+TGG 0.523093 3_1:+11816450 Msa0348880:CDS
TACAAACAACCGAACAAGAA+TGG 0.524034 3_1:+11811411 Msa0348880:CDS
TGTCATGATCAAAGAACGAT+TGG 0.527909 3_1:-11810919 None:intergenic
GCATGAATAAATTTAGCTCC+GGG 0.529301 3_1:-11810839 None:intergenic
TGGATAGGTTGATGTGAAAT+GGG 0.531677 3_1:-11811118 None:intergenic
GATTTACAGGATGATTTCAT+GGG 0.533021 3_1:+11816334 Msa0348880:CDS
GTATGGAAATGAATTTGGAA+TGG 0.534748 3_1:+11811684 Msa0348880:CDS
CCTTATACTGTGATGATAAG+TGG 0.535234 3_1:+11811643 Msa0348880:CDS
GAACACATTGTTGCTGGTGC+AGG 0.536052 3_1:+11816283 Msa0348880:CDS
AATGGAACCACCTCTTCCTA+AGG 0.542226 3_1:+11811429 Msa0348880:CDS
TGTAGTGAGTGCTGAAACGA+CGG 0.546049 3_1:+11811474 Msa0348880:CDS
TCTACACATTATAACCAAAA+GGG 0.546861 3_1:+11810632 Msa0348880:CDS
GGAAACCATCTATTGTGGAT+AGG 0.548035 3_1:-11811133 None:intergenic
CGTGGTGATGTTTAAATGGA+AGG 0.548108 3_1:-11811180 None:intergenic
GAAGCTAGACCGTTGGAGGA+TGG 0.549094 3_1:+11816472 Msa0348880:CDS
AGTAACAAGACGACCTGAGA+GGG 0.549751 3_1:-11810762 None:intergenic
GACCTGAGAGGGGATAGAAA+TGG 0.554535 3_1:-11810751 None:intergenic
CATGGAAGCTAGACCGTTGG+AGG 0.559366 3_1:+11816468 Msa0348880:CDS
AAAGCTTTGGCAGTTAGAAG+TGG 0.567341 3_1:+11811709 Msa0348880:CDS
AATGGGTGGGACATCAATGG+GGG 0.568371 3_1:-11810894 None:intergenic
TTGGTTTGAGTCTTCGATTG+GGG 0.568932 3_1:-11810573 None:intergenic
ATGATCTAGGATGGGCAGCA+TGG 0.569534 3_1:+11811515 Msa0348880:CDS
ATCAAAGAACGATTGGACAA+TGG 0.570569 3_1:-11810912 None:intergenic
TTACAGGATGATTTCATGGG+TGG 0.571247 3_1:+11816337 Msa0348880:CDS
ACGAAAACAGTATAAGAATG+AGG 0.571532 3_1:-11810800 None:intergenic
TCAATAGTACAAACAACCAT+AGG 0.573953 3_1:-11816250 None:intergenic
GACAAAGCAGTCAACCATGA+TGG 0.574887 3_1:+11810938 Msa0348880:CDS
ATGAATCATTGTCTCTGTGA+TGG 0.575359 3_1:+11811028 Msa0348880:CDS
TGCTTAGGTCGGTTGAAGAG+TGG 0.577268 3_1:+11811578 Msa0348880:CDS
TATAGCGAAACTTAAAGCAA+AGG 0.578915 3_1:+11811267 Msa0348880:CDS
TATCCAGGTCAAGAAGGAGG+AGG 0.584517 3_1:+11811766 Msa0348880:CDS
CACAATAGATGGTTTCCAGA+AGG 0.584706 3_1:+11811139 Msa0348880:CDS
ATTTCATATCCAGGTCAAGA+AGG 0.586316 3_1:+11811760 Msa0348880:CDS
CAGAAACGATGTTTAGGGAA+GGG 0.587217 3_1:-11810529 None:intergenic
GTTATAATGTGTAGATAACA+TGG 0.589863 3_1:-11810624 None:intergenic
CCAAGGGATGACCCCAAGAG+TGG 0.594011 3_1:+11816529 Msa0348880:CDS
AAATATTCCTTAGGAAGAGG+TGG 0.594958 3_1:-11811436 None:intergenic
CTTGCAGAGGCCATTGATGA+GGG 0.595208 3_1:+11816496 Msa0348880:CDS
CTTCTGGAAACCATCTATTG+TGG 0.595445 3_1:-11811138 None:intergenic
CCCCAAGAGTGGGACAAGAA+GGG 0.598817 3_1:+11816540 Msa0348880:CDS
ACTTGCAGAGGCCATTGATG+AGG 0.601617 3_1:+11816495 Msa0348880:CDS
ATCCAGGTCAAGAAGGAGGA+GGG 0.602246 3_1:+11811767 Msa0348880:CDS
GATCTTCCTAAGCTTGGTGA+AGG 0.603933 3_1:+11816202 Msa0348880:CDS
GCAGAAACGATGTTTAGGGA+AGG 0.605789 3_1:-11810530 None:intergenic
TTTCCATACGTATTAAACCT+CGG 0.609189 3_1:-11811670 None:intergenic
CTCTAGAACAGTCTCTCTGA+AGG 0.609943 3_1:-11816392 None:intergenic
TCTGCAAGTCCATCCTCCAA+CGG 0.610108 3_1:-11816481 None:intergenic
ACAACATTTCATAGAGAACC+TGG 0.610615 3_1:+11810691 Msa0348880:CDS
AAGAACGATTGGACAATGGG+TGG 0.614907 3_1:-11810908 None:intergenic
AGAACGATTGGACAATGGGT+GGG 0.617288 3_1:-11810907 None:intergenic
TAATAAAGTGGTGCTTAGGT+CGG 0.624945 3_1:+11811567 Msa0348880:CDS
GCTAGAGAATGATCTAGGAT+GGG 0.627088 3_1:+11811507 Msa0348880:CDS
TCTGAAGGACACAACAGGGT+CGG 0.628668 3_1:-11816377 None:intergenic
GTACATGGAAGCTAGACCGT+TGG 0.629595 3_1:+11816465 Msa0348880:CDS
TGGTTTGAGTCTTCGATTGG+GGG 0.638810 3_1:-11810572 None:intergenic
GATAGAAATGGAAAAGCGTG+AGG 0.641029 3_1:-11810739 None:intergenic
TCTCTCTGAAGGACACAACA+GGG 0.645685 3_1:-11816381 None:intergenic
CAAGGGATGACCCCAAGAGT+GGG 0.646004 3_1:+11816530 Msa0348880:CDS
ATGAGGGCACAATAGGACCA+AGG 0.652106 3_1:+11816512 Msa0348880:CDS
TCTTTCACCTGAGAAAATGA+TGG 0.654677 3_1:+11811810 Msa0348880:CDS
TCATATCCAGGTCAAGAAGG+AGG 0.656740 3_1:+11811763 Msa0348880:CDS
TGAGGGCACAATAGGACCAA+GGG 0.659043 3_1:+11816513 Msa0348880:CDS
AAGACATGGTGTGACCATCA+TGG 0.667161 3_1:-11810952 None:intergenic
GGCAGCATGGAAAATTCATG+TGG 0.671300 3_1:+11811528 Msa0348880:CDS
GTGAGTGCTGAAACGACGGT+AGG 0.677302 3_1:+11811478 Msa0348880:CDS
GGGACAAGAAGGGAAATCCA+AGG 0.677819 3_1:+11816550 Msa0348880:CDS
TTGAATAGATAACAAAGACA+TGG 0.686062 3_1:-11810966 None:intergenic
ATAGAAATGGAAAAGCGTGA+GGG 0.687050 3_1:-11810738 None:intergenic
TAGTAACAAGACGACCTGAG+AGG 0.695039 3_1:-11810763 None:intergenic
GTTGGAGGATGGACTTGCAG+AGG 0.695124 3_1:+11816483 Msa0348880:CDS
GTAACAAGACGACCTGAGAG+GGG 0.714877 3_1:-11810761 None:intergenic
ACATTTCATAGAGAACCTGG+TGG 0.735789 3_1:+11810694 Msa0348880:CDS
TGATGATAAGTGGTTCACCG+AGG 0.741768 3_1:+11811653 Msa0348880:CDS
CATATGTGTGAACAAACTCG+TGG 0.754058 3_1:-11811198 None:intergenic
GTGACTTACTCATCACAGTG+CGG 0.790076 3_1:-11816423 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAAATTGCAA+TGG + chr3_1:11813554-11813573 Msa0348880:intron 10.0%
!!! TTTTTTTTACAAAATTTAGT+TGG + chr3_1:11813657-11813676 Msa0348880:intron 10.0%
!! GTACATAAAATATAATTTAT+AGG + chr3_1:11813888-11813907 Msa0348880:intron 10.0%
!!! TCATATTTTTTTATTTTGAA+GGG - chr3_1:11815557-11815576 None:intergenic 10.0%
!!! TTCATATTTTTTTATTTTGA+AGG - chr3_1:11815558-11815577 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814670-11814689 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814670-11814689 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814670-11814689 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814670-11814689 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814670-11814689 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814670-11814689 None:intergenic 100.0%
!!! AGTGATTTTTATATAGATTT+AGG + chr3_1:11811955-11811974 Msa0348880:intron 15.0%
!!! TATTGTAAGTTTTTTTTAGA+GGG - chr3_1:11812368-11812387 None:intergenic 15.0%
!!! TTATTGTAAGTTTTTTTTAG+AGG - chr3_1:11812369-11812388 None:intergenic 15.0%
!! AAAACTTACAATAAACATTT+AGG + chr3_1:11812375-11812394 Msa0348880:intron 15.0%
!! AAACTTACAATAAACATTTA+GGG + chr3_1:11812376-11812395 Msa0348880:intron 15.0%
!!! CTAGTTTTTAAAACTAAAAA+AGG + chr3_1:11812513-11812532 Msa0348880:intron 15.0%
!!! AAGTTTTGCTTTTTAATTTT+TGG + chr3_1:11812550-11812569 Msa0348880:intron 15.0%
!!! TTTATTTGTTGATTTGTTTT+TGG - chr3_1:11812831-11812850 None:intergenic 15.0%
!! CAAAACTAATATTAAAATGT+AGG + chr3_1:11812908-11812927 Msa0348880:intron 15.0%
!!! AAGTGTTATTGTATAATTTA+TGG + chr3_1:11813434-11813453 Msa0348880:intron 15.0%
!! CATAAAATATAATTTATAGG+TGG + chr3_1:11813891-11813910 Msa0348880:intron 15.0%
!!! GAATATCATCTTTTTTTTTT+AGG - chr3_1:11814220-11814239 None:intergenic 15.0%
!!! TTATTTTCTATAATCAAGTA+TGG + chr3_1:11815108-11815127 Msa0348880:intron 15.0%
!!! TGATTATGTTATTAGTTTTA+GGG - chr3_1:11815167-11815186 None:intergenic 15.0%
!! GAATATACTTGAATATATAA+TGG + chr3_1:11815575-11815594 Msa0348880:intron 15.0%
!!! AAGACATTTTTTGTTTTTTT+GGG - chr3_1:11815872-11815891 None:intergenic 15.0%
!!! AAAGACATTTTTTGTTTTTT+TGG - chr3_1:11815873-11815892 None:intergenic 15.0%
!! AATGTGTTAAATGACATATT+TGG - chr3_1:11810595-11810614 None:intergenic 20.0%
!!! AAATATGTCATTTAACACAT+TGG + chr3_1:11810594-11810613 Msa0348880:CDS 20.0%
!!! AATATGTCATTTAACACATT+GGG + chr3_1:11810595-11810614 Msa0348880:CDS 20.0%
!!! AAGATTCTCTCTTTTAAAAT+GGG - chr3_1:11811229-11811248 None:intergenic 20.0%
!! AAATCTAATCGATACAAAAA+AGG - chr3_1:11811613-11811632 None:intergenic 20.0%
!! TATCCAAAACATGAATATTT+CGG + chr3_1:11812111-11812130 Msa0348880:intron 20.0%
!! ACCAAATTGAATTCATTATT+TGG - chr3_1:11812317-11812336 None:intergenic 20.0%
!! TAAAAACTAAAAAAGCTGTT+TGG + chr3_1:11812445-11812464 Msa0348880:intron 20.0%
!!! TGCTTTTTAATTTTTGGTTT+TGG + chr3_1:11812556-11812575 Msa0348880:intron 20.0%
!! AATTTGCCATTAATGAAAAA+TGG - chr3_1:11812612-11812631 None:intergenic 20.0%
!!! TTTTTCCTTTCACAAAATAT+GGG - chr3_1:11812785-11812804 None:intergenic 20.0%
!!! TTTTTTCCTTTCACAAAATA+TGG - chr3_1:11812786-11812805 None:intergenic 20.0%
!!! TAAAATTTTTCTTCATAAGC+TGG + chr3_1:11812989-11813008 Msa0348880:intron 20.0%
!!! AAAATTTTTCTTCATAAGCT+GGG + chr3_1:11812990-11813009 Msa0348880:intron 20.0%
!!! AAAATTTCCATCACAATTTT+TGG - chr3_1:11813029-11813048 None:intergenic 20.0%
!!! AAATTGTGATGGAAATTTTT+TGG + chr3_1:11813030-11813049 Msa0348880:intron 20.0%
!!! AATTGTGATGGAAATTTTTT+GGG + chr3_1:11813031-11813050 Msa0348880:intron 20.0%
!!! TATTGAAGAATTTTTTTAGG+AGG + chr3_1:11813056-11813075 Msa0348880:intron 20.0%
!!! ACATAAAAGTATCCATTTTA+GGG - chr3_1:11813130-11813149 None:intergenic 20.0%
!!! AACATAAAAGTATCCATTTT+AGG - chr3_1:11813131-11813150 None:intergenic 20.0%
!! TCTTTAAATCATCACTAATT+TGG - chr3_1:11813260-11813279 None:intergenic 20.0%
!!! AAGCTTAATTTTATGATAGA+TGG - chr3_1:11813501-11813520 None:intergenic 20.0%
!!! AAGCTTATTTTTAATTGCAA+TGG + chr3_1:11813515-11813534 Msa0348880:intron 20.0%
!!! GCAATATCAATTTTTTTTCA+AGG - chr3_1:11813621-11813640 None:intergenic 20.0%
!! AGAAAGAAAAAAAATCTGTT+TGG - chr3_1:11814053-11814072 None:intergenic 20.0%
!!! AACTATTTTGAGACATATTT+TGG + chr3_1:11814244-11814263 Msa0348880:intron 20.0%
!!! AAAGTCATTTGAAACTTTAA+TGG - chr3_1:11814334-11814353 None:intergenic 20.0%
!! TTACATTGTATTTGTCTTAA+CGG + chr3_1:11814635-11814654 Msa0348880:intron 20.0%
!!! TTTTTTTTTGTGAAAACCAT+TGG + chr3_1:11814773-11814792 Msa0348880:intron 20.0%
!!! TTTTTTTTGTGAAAACCATT+GGG + chr3_1:11814774-11814793 Msa0348880:intron 20.0%
!! ATTATTCAATCAATGATAGT+AGG + chr3_1:11814812-11814831 Msa0348880:intron 20.0%
!!! CTGATTATGTTATTAGTTTT+AGG - chr3_1:11815168-11815187 None:intergenic 20.0%
!! AATGGAAAAAGAAAAAGAAA+AGG + chr3_1:11815593-11815612 Msa0348880:intron 20.0%
!! AAAAAATACGACATTCTAAT+TGG + chr3_1:11815670-11815689 Msa0348880:intron 20.0%
!!! AGACATTTTTTGTTTTTTTG+GGG - chr3_1:11815871-11815890 None:intergenic 20.0%
!!! AATTTCAATTTTTTCTCTGA+TGG - chr3_1:11816022-11816041 None:intergenic 20.0%
!!! AATGAATTTGATTTGTGATT+TGG - chr3_1:11816108-11816127 None:intergenic 20.0%
! GTTATAATGTGTAGATAACA+TGG - chr3_1:11810627-11810646 None:intergenic 25.0%
! ATCTACACATTATAACCAAA+AGG + chr3_1:11810631-11810650 Msa0348880:CDS 25.0%
! TCTACACATTATAACCAAAA+GGG + chr3_1:11810632-11810651 Msa0348880:CDS 25.0%
! TTGAATAGATAACAAAGACA+TGG - chr3_1:11810969-11810988 None:intergenic 25.0%
! CAAAATGATATTCCTGTTTA+TGG + chr3_1:11811094-11811113 Msa0348880:CDS 25.0%
!!! TTAAATGGAAGGTTGATAAT+TGG - chr3_1:11811172-11811191 None:intergenic 25.0%
!!! GAAGATTCTCTCTTTTAAAA+TGG - chr3_1:11811230-11811249 None:intergenic 25.0%
! AATCTTTATCAGCATTAGTT+TGG + chr3_1:11811329-11811348 Msa0348880:CDS 25.0%
! TGCAAATCATGATAATAAAG+TGG + chr3_1:11811555-11811574 Msa0348880:CDS 25.0%
! AATACGTATGGAAATGAATT+TGG + chr3_1:11811679-11811698 Msa0348880:CDS 25.0%
!! TATGGAAATGAATTTGGAAT+GGG + chr3_1:11811685-11811704 Msa0348880:CDS 25.0%
! ATAGTCAAAGATTAGAACAA+AGG - chr3_1:11811883-11811902 None:intergenic 25.0%
! TATGCTATAATGCTCTTTAA+TGG + chr3_1:11811900-11811919 Msa0348880:intron 25.0%
!! TTGATTCAGTGTTCATTTTA+TGG + chr3_1:11812045-11812064 Msa0348880:intron 25.0%
! ACCATTGTATGTTATTAACT+TGG + chr3_1:11812170-11812189 Msa0348880:intron 25.0%
! TCCAAGTTAATAACATACAA+TGG - chr3_1:11812174-11812193 None:intergenic 25.0%
! GCCAAATAATGAATTCAATT+TGG + chr3_1:11812313-11812332 Msa0348880:intron 25.0%
!!! TTTGTTGATTTGTTTTTGGT+AGG - chr3_1:11812827-11812846 None:intergenic 25.0%
!!! ATTGTGATGGAAATTTTTTG+GGG + chr3_1:11813032-11813051 Msa0348880:intron 25.0%
!!! GGCTATTGAAGAATTTTTTT+AGG + chr3_1:11813053-11813072 Msa0348880:intron 25.0%
!!! GAAAAGTTGGTATATTTCTA+TGG + chr3_1:11813087-11813106 Msa0348880:intron 25.0%
! TGATGATTTAAAGAACTTTG+AGG + chr3_1:11813266-11813285 Msa0348880:intron 25.0%
!!! TATTCATTGGCTTGTTAATT+TGG - chr3_1:11813382-11813401 None:intergenic 25.0%
! AACGTGAAAATGTTATTCAT+TGG - chr3_1:11813395-11813414 None:intergenic 25.0%
!! ATGAATAACATTTTCACGTT+TGG + chr3_1:11813395-11813414 Msa0348880:intron 25.0%
! ACGTTTGGAAAACAATATTA+TGG + chr3_1:11813410-11813429 Msa0348880:intron 25.0%
!!! CAATGGTACTATATTTTGAT+GGG + chr3_1:11813571-11813590 Msa0348880:intron 25.0%
! AAAGTTTCAAATGACTTTGA+AGG + chr3_1:11814336-11814355 Msa0348880:intron 25.0%
! GTAGTTGGATTACTATATAA+TGG + chr3_1:11814360-11814379 Msa0348880:intron 25.0%
! GTTAAGACAAATACAATGTA+AGG - chr3_1:11814636-11814655 None:intergenic 25.0%
! ACACAGATGATATAGAAAAA+GGG - chr3_1:11814978-11814997 None:intergenic 25.0%
!! CACTGTTTCATCTAAAATAA+TGG + chr3_1:11815217-11815236 Msa0348880:intron 25.0%
!!! TAAATGTTTTTTGTTTCGAG+AGG + chr3_1:11815440-11815459 Msa0348880:intron 25.0%
!!! AAATGTTTTTTGTTTCGAGA+GGG + chr3_1:11815441-11815460 Msa0348880:intron 25.0%
!!! GAAAAAGAAAAGGTATTTGA+CGG + chr3_1:11815603-11815622 Msa0348880:intron 25.0%
! ATCCATTCAAATTAAAGTGA+CGG + chr3_1:11815715-11815734 Msa0348880:intron 25.0%
! AAATTCAATCCTCAAATCTA+CGG + chr3_1:11815790-11815809 Msa0348880:intron 25.0%
! AAAAATTCATAGCACGAATA+GGG - chr3_1:11816135-11816154 None:intergenic 25.0%
!! TGTTGGTTTAGTAATGATGT+TGG - chr3_1:11810674-11810693 None:intergenic 30.0%
ACGAAAACAGTATAAGAATG+AGG - chr3_1:11810803-11810822 None:intergenic 30.0%
! TGCATGAATAAATTTAGCTC+CGG - chr3_1:11810843-11810862 None:intergenic 30.0%
CAATTCACAGAATTAGTAGA+TGG + chr3_1:11810986-11811005 Msa0348880:CDS 30.0%
! TTAGTAGATGGTGTTTTCAT+TGG + chr3_1:11810998-11811017 Msa0348880:CDS 30.0%
CTATAGATTCCACTGAAAAA+TGG - chr3_1:11811252-11811271 None:intergenic 30.0%
TATAGCGAAACTTAAAGCAA+AGG + chr3_1:11811267-11811286 Msa0348880:CDS 30.0%
! CTCTTCCTAAGGAATATTTT+GGG + chr3_1:11811440-11811459 Msa0348880:CDS 30.0%
GAATTCCCAAAATATTCCTT+AGG - chr3_1:11811448-11811467 None:intergenic 30.0%
ATGATAATAAAGTGGTGCTT+AGG + chr3_1:11811563-11811582 Msa0348880:CDS 30.0%
TTTCCATACGTATTAAACCT+CGG - chr3_1:11811673-11811692 None:intergenic 30.0%
GTATGGAAATGAATTTGGAA+TGG + chr3_1:11811684-11811703 Msa0348880:CDS 30.0%
GGATATGCTAACAAATTTGA+TGG + chr3_1:11811730-11811749 Msa0348880:CDS 30.0%
GGAAAAGTAATTTCATATCC+AGG + chr3_1:11811751-11811770 Msa0348880:CDS 30.0%
! TGACCGAAATATTCATGTTT+TGG - chr3_1:11812117-11812136 None:intergenic 30.0%
!!! AGTTTTTTTTAGAGGGAAAC+TGG - chr3_1:11812361-11812380 None:intergenic 30.0%
!!! AAGGTGCCATTTTTCATTAA+TGG + chr3_1:11812603-11812622 Msa0348880:intron 30.0%
AGCAAATATAAACAGAGTGT+AGG - chr3_1:11812655-11812674 None:intergenic 30.0%
GTATGAACCAAAAATTGTGA+TGG + chr3_1:11813019-11813038 Msa0348880:intron 30.0%
TAACGTATTTCACCCTAAAA+TGG + chr3_1:11813115-11813134 Msa0348880:intron 30.0%
!!! GGTTGTTTTTCATTGAAACA+TGG + chr3_1:11813205-11813224 Msa0348880:intron 30.0%
! TGTTTTTCATTGAAACATGG+TGG + chr3_1:11813208-11813227 Msa0348880:intron 30.0%
!!! AGAACTTTGAGGTATTTTCT+TGG + chr3_1:11813277-11813296 Msa0348880:intron 30.0%
!! GCAATGGTACTATATTTTGA+TGG + chr3_1:11813570-11813589 Msa0348880:intron 30.0%
! GAAGAATATCATCTCTCTTT+TGG - chr3_1:11814198-11814217 None:intergenic 30.0%
TTTACTCTTTCTCTCCTTAT+TGG + chr3_1:11814296-11814315 Msa0348880:intron 30.0%
!!! GACTTACTTTTTGAGAATGA+AGG - chr3_1:11814399-11814418 None:intergenic 30.0%
! TTTTCAAACCTTGCTAAAGT+TGG + chr3_1:11814595-11814614 Msa0348880:intron 30.0%
AATGATAGTAGGAAGATTGA+GGG + chr3_1:11814823-11814842 Msa0348880:intron 30.0%
! TTGTGTTACAAAACTCCTTT+TGG - chr3_1:11814865-11814884 None:intergenic 30.0%
!!! ACATTCCAAGACTATTTTTG+AGG + chr3_1:11814939-11814958 Msa0348880:intron 30.0%
GACACAGATGATATAGAAAA+AGG - chr3_1:11814979-11814998 None:intergenic 30.0%
!! TAGATTCATTTCTAGTCGAT+CGG - chr3_1:11815295-11815314 None:intergenic 30.0%
!!! TGTCAGCAAGCTATTTTTAT+TGG + chr3_1:11815912-11815931 Msa0348880:intron 30.0%
!!! TTCAATTTTTTCTCTGATGG+CGG - chr3_1:11816019-11816038 None:intergenic 30.0%
GAAAAATTCATAGCACGAAT+AGG - chr3_1:11816136-11816155 None:intergenic 30.0%
TCAATAGTACAAACAACCAT+AGG - chr3_1:11816253-11816272 None:intergenic 30.0%
TATGGTTGTTTGTACTATTG+AGG + chr3_1:11816252-11816271 Msa0348880:CDS 30.0%
GATTTACAGGATGATTTCAT+GGG + chr3_1:11816334-11816353 Msa0348880:CDS 30.0%
AATCCAAGGAAAAAAAAACG+AGG + chr3_1:11816564-11816583 Msa0348880:CDS 30.0%
ACATGCAGAAACGATGTTTA+GGG - chr3_1:11810537-11810556 None:intergenic 35.0%
AACATGCAGAAACGATGTTT+AGG - chr3_1:11810538-11810557 None:intergenic 35.0%
!! TTTGGTTTGAGTCTTCGATT+GGG - chr3_1:11810577-11810596 None:intergenic 35.0%
!! ATTTGGTTTGAGTCTTCGAT+TGG - chr3_1:11810578-11810597 None:intergenic 35.0%
!! TTTTGAAGAGAAGTCCCTTT+TGG - chr3_1:11810649-11810668 None:intergenic 35.0%
GGTTCTCTATGAAATGTTGT+TGG - chr3_1:11810691-11810710 None:intergenic 35.0%
ACAACATTTCATAGAGAACC+TGG + chr3_1:11810691-11810710 Msa0348880:CDS 35.0%
! ATAGAAATGGAAAAGCGTGA+GGG - chr3_1:11810741-11810760 None:intergenic 35.0%
! GCATGAATAAATTTAGCTCC+GGG - chr3_1:11810842-11810861 None:intergenic 35.0%
TCAAAGAACGATTGGACAAT+GGG - chr3_1:11810914-11810933 None:intergenic 35.0%
ATCAAAGAACGATTGGACAA+TGG - chr3_1:11810915-11810934 None:intergenic 35.0%
TGTCATGATCAAAGAACGAT+TGG - chr3_1:11810922-11810941 None:intergenic 35.0%
ATCACAGAGACAATGATTCA+TGG - chr3_1:11811029-11811048 None:intergenic 35.0%
ATGAATCATTGTCTCTGTGA+TGG + chr3_1:11811028-11811047 Msa0348880:CDS 35.0%
! TCTGTGATGGAACATCTTAT+TGG + chr3_1:11811041-11811060 Msa0348880:CDS 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG - chr3_1:11811121-11811140 None:intergenic 35.0%
ATCAACCTATCCACAATAGA+TGG + chr3_1:11811128-11811147 Msa0348880:CDS 35.0%
ATAATTGGACCATAACCTTC+TGG - chr3_1:11811157-11811176 None:intergenic 35.0%
! AACTCGTGGTGATGTTTAAA+TGG - chr3_1:11811187-11811206 None:intergenic 35.0%
!! GAGAATCTTCCATTTTTCAG+TGG + chr3_1:11811240-11811259 Msa0348880:CDS 35.0%
TCAGAGAACAACTTGCAAAA+TGG + chr3_1:11811387-11811406 Msa0348880:CDS 35.0%
TACAAACAACCGAACAAGAA+TGG + chr3_1:11811411-11811430 Msa0348880:CDS 35.0%
AAATATTCCTTAGGAAGAGG+TGG - chr3_1:11811439-11811458 None:intergenic 35.0%
CCAAAATATTCCTTAGGAAG+AGG - chr3_1:11811442-11811461 None:intergenic 35.0%
! CCTCTTCCTAAGGAATATTT+TGG + chr3_1:11811439-11811458 Msa0348880:CDS 35.0%
TAATAAAGTGGTGCTTAGGT+CGG + chr3_1:11811567-11811586 Msa0348880:CDS 35.0%
CCACTTATCATCACAGTATA+AGG - chr3_1:11811646-11811665 None:intergenic 35.0%
CCTTATACTGTGATGATAAG+TGG + chr3_1:11811643-11811662 Msa0348880:CDS 35.0%
! ATTTGGAATGGGAAAAGCTT+TGG + chr3_1:11811696-11811715 Msa0348880:CDS 35.0%
ATTTCATATCCAGGTCAAGA+AGG + chr3_1:11811760-11811779 Msa0348880:CDS 35.0%
TCTTTCACCTGAGAAAATGA+TGG + chr3_1:11811810-11811829 Msa0348880:CDS 35.0%
!!! TGGTTTTGGAAACAGCAAAA+AGG + chr3_1:11812570-11812589 Msa0348880:intron 35.0%
!! TTTTGGAAACAGCAAAAAGG+CGG + chr3_1:11812573-11812592 Msa0348880:intron 35.0%
! TGACTCCCATATTTTGTGAA+AGG + chr3_1:11812777-11812796 Msa0348880:intron 35.0%
AGTGATCTGAAAACGATCAA+CGG + chr3_1:11813154-11813173 Msa0348880:intron 35.0%
TTATCACATCGTAACTTGGT+CGG - chr3_1:11813180-11813199 None:intergenic 35.0%
CACTTTATCACATCGTAACT+TGG - chr3_1:11813184-11813203 None:intergenic 35.0%
AGTTACGATGTGATAAAGTG+TGG + chr3_1:11813184-11813203 Msa0348880:intron 35.0%
GGATGTTGAAATGTCTTTGA+AGG - chr3_1:11813239-11813258 None:intergenic 35.0%
! ATTTTCTTGGAGCTCTCAAT+TGG + chr3_1:11813290-11813309 Msa0348880:intron 35.0%
! TTTTCTTGGAGCTCTCAATT+GGG + chr3_1:11813291-11813310 Msa0348880:intron 35.0%
ACATCAACAAGTCATGTTTG+AGG + chr3_1:11813327-11813346 Msa0348880:intron 35.0%
GAGGTGGATAACAATTAACA+AGG + chr3_1:11813346-11813365 Msa0348880:intron 35.0%
! AATGACTTTGAAGGTGTAGT+TGG + chr3_1:11814345-11814364 Msa0348880:intron 35.0%
!! CATGTTCTGAAAAGAGAGAT+AGG - chr3_1:11814430-11814449 None:intergenic 35.0%
AGAATCAGCATTAGAACACA+TGG - chr3_1:11814511-11814530 None:intergenic 35.0%
CATAACACACGATGAGAAAT+GGG - chr3_1:11814566-11814585 None:intergenic 35.0%
AGAAAGAACCAACTTTAGCA+AGG - chr3_1:11814606-11814625 None:intergenic 35.0%
! ATCCCACTTTGTGGATTAAA+CGG - chr3_1:11814739-11814758 None:intergenic 35.0%
AGACTATAGATTTCACCCAA+TGG - chr3_1:11814792-11814811 None:intergenic 35.0%
CAATGATAGTAGGAAGATTG+AGG + chr3_1:11814822-11814841 Msa0348880:intron 35.0%
! TGTTACAAAACTCCTTTTGG+AGG - chr3_1:11814862-11814881 None:intergenic 35.0%
AATACCTTTGTGTTTCCACT+TGG + chr3_1:11814884-11814903 Msa0348880:intron 35.0%
CACTACCTCAAAAATAGTCT+TGG - chr3_1:11814947-11814966 None:intergenic 35.0%
!!! CAAGACTATTTTTGAGGTAG+TGG + chr3_1:11814945-11814964 Msa0348880:intron 35.0%
!! AGATTCATTTCTAGTCGATC+GGG - chr3_1:11815294-11815313 None:intergenic 35.0%
TGTAATCGATTACCAGATCT+TGG + chr3_1:11815393-11815412 Msa0348880:intron 35.0%
!! AAGAAAAGGTATTTGACGGA+TGG + chr3_1:11815607-11815626 Msa0348880:intron 35.0%
ACATTCTAATTGGTTGAGAG+CGG + chr3_1:11815680-11815699 Msa0348880:intron 35.0%
!! TGCCGTCACTTTAATTTGAA+TGG - chr3_1:11815720-11815739 None:intergenic 35.0%
GATACAAACTCATTTGTGTG+TGG + chr3_1:11815741-11815760 Msa0348880:intron 35.0%
! TTTTCAGCTAGTGTTCTGAT+GGG + chr3_1:11815940-11815959 Msa0348880:intron 35.0%
!!! TCAATTTTTTCTCTGATGGC+GGG - chr3_1:11816018-11816037 None:intergenic 35.0%
TCATCTTGAGATCTGTTTGA+AGG + chr3_1:11816312-11816331 Msa0348880:CDS 35.0%
GATCTGTTTGAAGGATTTAC+AGG + chr3_1:11816321-11816340 Msa0348880:CDS 35.0%
GGATTTACAGGATGATTTCA+TGG + chr3_1:11816333-11816352 Msa0348880:CDS 35.0%
TACAATCTGTTGTGCTTGTT+GGG - chr3_1:11816448-11816467 None:intergenic 35.0%
CAGAAACGATGTTTAGGGAA+GGG - chr3_1:11810532-11810551 None:intergenic 40.0%
! TTGGTTTGAGTCTTCGATTG+GGG - chr3_1:11810576-11810595 None:intergenic 40.0%
ACATTTCATAGAGAACCTGG+TGG + chr3_1:11810694-11810713 Msa0348880:CDS 40.0%
! GATAGAAATGGAAAAGCGTG+AGG - chr3_1:11810742-11810761 None:intergenic 40.0%
TGTGAAATGGGACCATAAAC+AGG - chr3_1:11811109-11811128 None:intergenic 40.0%
!! GTGGATAGGTTGATGTGAAA+TGG - chr3_1:11811122-11811141 None:intergenic 40.0%
GGAAACCATCTATTGTGGAT+AGG - chr3_1:11811136-11811155 None:intergenic 40.0%
! CTTCTGGAAACCATCTATTG+TGG - chr3_1:11811141-11811160 None:intergenic 40.0%
CACAATAGATGGTTTCCAGA+AGG + chr3_1:11811139-11811158 Msa0348880:CDS 40.0%
AGATGGTTTCCAGAAGGTTA+TGG + chr3_1:11811145-11811164 Msa0348880:CDS 40.0%
! CGTGGTGATGTTTAAATGGA+AGG - chr3_1:11811183-11811202 None:intergenic 40.0%
CATATGTGTGAACAAACTCG+TGG - chr3_1:11811201-11811220 None:intergenic 40.0%
! CACGAGTTTGTTCACACATA+TGG + chr3_1:11811199-11811218 Msa0348880:CDS 40.0%
GAGTTGCTAGAGAATGATCT+AGG + chr3_1:11811502-11811521 Msa0348880:CDS 40.0%
TGCTAGAGAATGATCTAGGA+TGG + chr3_1:11811506-11811525 Msa0348880:CDS 40.0%
! GCTAGAGAATGATCTAGGAT+GGG + chr3_1:11811507-11811526 Msa0348880:CDS 40.0%
TCACCGAGGTTTAATACGTA+TGG + chr3_1:11811667-11811686 Msa0348880:CDS 40.0%
! AAAGCTTTGGCAGTTAGAAG+TGG + chr3_1:11811709-11811728 Msa0348880:CDS 40.0%
GCACTGAAACAACGAAATCA+CGG - chr3_1:11811990-11812009 None:intergenic 40.0%
TCTCAATTGGGTGAAAGACT+TGG + chr3_1:11813303-11813322 Msa0348880:intron 40.0%
TCAACAAGTCATGTTTGAGG+TGG + chr3_1:11813330-11813349 Msa0348880:intron 40.0%
GGCTTCAAGCTAATCCAATA+AGG - chr3_1:11814313-11814332 None:intergenic 40.0%
ACTCCTTTCTTTCTCACACT+AGG + chr3_1:11814457-11814476 Msa0348880:intron 40.0%
TCACCTAGTGTGAGAAAGAA+AGG - chr3_1:11814463-11814482 None:intergenic 40.0%
ATGAGAAATGGGTGATAGGA+TGG - chr3_1:11814555-11814574 None:intergenic 40.0%
CCATAACACACGATGAGAAA+TGG - chr3_1:11814567-11814586 None:intergenic 40.0%
CCATTTCTCATCGTGTGTTA+TGG + chr3_1:11814564-11814583 Msa0348880:intron 40.0%
GATTAAACGGTGTACAGGAT+TGG - chr3_1:11814726-11814745 None:intergenic 40.0%
! TTGTGGATTAAACGGTGTAC+AGG - chr3_1:11814731-11814750 None:intergenic 40.0%
ACACCGTTTAATCCACAAAG+TGG + chr3_1:11814733-11814752 Msa0348880:intron 40.0%
CACCGTTTAATCCACAAAGT+GGG + chr3_1:11814734-11814753 Msa0348880:intron 40.0%
TCCACAAAGTGGGATAGTAA+AGG + chr3_1:11814744-11814763 Msa0348880:intron 40.0%
TCCTTTACTATCCCACTTTG+TGG - chr3_1:11814748-11814767 None:intergenic 40.0%
TAGGAAGATTGAGGGTTTGT+CGG + chr3_1:11814831-11814850 Msa0348880:intron 40.0%
TCCACTTGGAGGATATGTAA+TGG + chr3_1:11814898-11814917 Msa0348880:intron 40.0%
ACCATTACATATCCTCCAAG+TGG - chr3_1:11814902-11814921 None:intergenic 40.0%
GAAATGAATCTATGCGTCGA+AGG + chr3_1:11815303-11815322 Msa0348880:intron 40.0%
TCATCAGTTCTTCCAAGATC+TGG - chr3_1:11815408-11815427 None:intergenic 40.0%
TAGGCTTAACCGTAGATTTG+AGG - chr3_1:11815802-11815821 None:intergenic 40.0%
! GTTTTCAGCTAGTGTTCTGA+TGG + chr3_1:11815939-11815958 Msa0348880:intron 40.0%
! GGAGCCAGCCAAAAATTTTT+GGG + chr3_1:11815982-11816001 Msa0348880:intron 40.0%
! GAGCCAGCCAAAAATTTTTG+GGG + chr3_1:11815983-11816002 Msa0348880:intron 40.0%
TCTTGCTAAGTCAGATCCTA+TGG + chr3_1:11816234-11816253 Msa0348880:CDS 40.0%
GTTTGTACTATTGAGGAGTC+TGG + chr3_1:11816259-11816278 Msa0348880:CDS 40.0%
TTACAGGATGATTTCATGGG+TGG + chr3_1:11816337-11816356 Msa0348880:CDS 40.0%
GTACAATCTGTTGTGCTTGT+TGG - chr3_1:11816449-11816468 None:intergenic 40.0%
CAAGCACAACAGATTGTACA+TGG + chr3_1:11816450-11816469 Msa0348880:CDS 40.0%
!!! TGGCCTCGTTTTTTTTTCCT+TGG - chr3_1:11816570-11816589 None:intergenic 40.0%
AAAAAAACGAGGCCAAGATC+TGG + chr3_1:11816575-11816594 Msa0348880:CDS 40.0%
AAAAAACGAGGCCAAGATCT+GGG + chr3_1:11816576-11816595 Msa0348880:CDS 40.0%
GCAGAAACGATGTTTAGGGA+AGG - chr3_1:11810533-11810552 None:intergenic 45.0%
TGGTTTGAGTCTTCGATTGG+GGG - chr3_1:11810575-11810594 None:intergenic 45.0%
AGTGTTTCAGTTTGTCCACC+AGG - chr3_1:11810712-11810731 None:intergenic 45.0%
! ATGGAAAAGCGTGAGGGAAA+GGG - chr3_1:11810735-11810754 None:intergenic 45.0%
! AATGGAAAAGCGTGAGGGAA+AGG - chr3_1:11810736-11810755 None:intergenic 45.0%
TTCCATTTCTATCCCCTCTC+AGG + chr3_1:11810749-11810768 Msa0348880:CDS 45.0%
AGTAACAAGACGACCTGAGA+GGG - chr3_1:11810765-11810784 None:intergenic 45.0%
TAGTAACAAGACGACCTGAG+AGG - chr3_1:11810766-11810785 None:intergenic 45.0%
GTCGATTGCAAAAACAGTCC+CGG + chr3_1:11810821-11810840 Msa0348880:CDS 45.0%
GGGGGTGAGGATATCATTTA+TGG - chr3_1:11810879-11810898 None:intergenic 45.0%
ACAATGGGTGGGACATCAAT+GGG - chr3_1:11810899-11810918 None:intergenic 45.0%
AGAACGATTGGACAATGGGT+GGG - chr3_1:11810910-11810929 None:intergenic 45.0%
AAGAACGATTGGACAATGGG+TGG - chr3_1:11810911-11810930 None:intergenic 45.0%
GACAAAGCAGTCAACCATGA+TGG + chr3_1:11810938-11810957 Msa0348880:CDS 45.0%
AAGACATGGTGTGACCATCA+TGG - chr3_1:11810955-11810974 None:intergenic 45.0%
GAGGTGGTTCCATTCTTGTT+CGG - chr3_1:11811423-11811442 None:intergenic 45.0%
AATGGAACCACCTCTTCCTA+AGG + chr3_1:11811429-11811448 Msa0348880:CDS 45.0%
!! TGTAGTGAGTGCTGAAACGA+CGG + chr3_1:11811474-11811493 Msa0348880:CDS 45.0%
GGCAGCATGGAAAATTCATG+TGG + chr3_1:11811528-11811547 Msa0348880:CDS 45.0%
TGATGATAAGTGGTTCACCG+AGG + chr3_1:11811653-11811672 Msa0348880:CDS 45.0%
TCATATCCAGGTCAAGAAGG+AGG + chr3_1:11811763-11811782 Msa0348880:CDS 45.0%
! ACCTGAGAAAATGATGGTGC+TGG + chr3_1:11811816-11811835 Msa0348880:CDS 45.0%
! TCCAGCACCATCATTTTCTC+AGG - chr3_1:11811820-11811839 None:intergenic 45.0%
GGAGGACTAAGACGAAAAGT+TGG + chr3_1:11813074-11813093 Msa0348880:intron 45.0%
CACGATGAGAAATGGGTGAT+AGG - chr3_1:11814559-11814578 None:intergenic 45.0%
!!! ACGGTGTACAGGATTGGTTT+TGG - chr3_1:11814720-11814739 None:intergenic 45.0%
TTGTCGGAACATCCTCCAAA+AGG + chr3_1:11814847-11814866 Msa0348880:intron 45.0%
ACCTTTGTGTTTCCACTTGG+AGG + chr3_1:11814887-11814906 Msa0348880:intron 45.0%
TCCTCCAAGTGGAAACACAA+AGG - chr3_1:11814891-11814910 None:intergenic 45.0%
GGAAGGTTGTCATATCTGTG+AGG - chr3_1:11815345-11815364 None:intergenic 45.0%
ATTCGTCATCGCTGATGAGA+AGG - chr3_1:11815366-11815385 None:intergenic 45.0%
TAATTGGTTGAGAGCGGTGA+TGG + chr3_1:11815686-11815705 Msa0348880:intron 45.0%
! CGGAGCCAGCCAAAAATTTT+TGG + chr3_1:11815981-11816000 Msa0348880:intron 45.0%
!!! CCACCCCAAAAATTTTTGGC+TGG - chr3_1:11815989-11816008 None:intergenic 45.0%
!! CCAGCCAAAAATTTTTGGGG+TGG + chr3_1:11815986-11816005 Msa0348880:intron 45.0%
TGAACAGTAACACGCACAAC+AGG - chr3_1:11816166-11816185 None:intergenic 45.0%
GCTTCAGATCTTCCTAAGCT+TGG + chr3_1:11816196-11816215 Msa0348880:CDS 45.0%
! GATCTTCCTAAGCTTGGTGA+AGG + chr3_1:11816202-11816221 Msa0348880:CDS 45.0%
TTGAGACCTTCACCAAGCTT+AGG - chr3_1:11816211-11816230 None:intergenic 45.0%
TCTGGAGAACACATTGTTGC+TGG + chr3_1:11816277-11816296 Msa0348880:CDS 45.0%
! TCTCTCTGAAGGACACAACA+GGG - chr3_1:11816384-11816403 None:intergenic 45.0%
!! CTCTAGAACAGTCTCTCTGA+AGG - chr3_1:11816395-11816414 None:intergenic 45.0%
GTGACTTACTCATCACAGTG+CGG - chr3_1:11816426-11816445 None:intergenic 45.0%
TCCTATTGTGCCCTCATCAA+TGG - chr3_1:11816509-11816528 None:intergenic 45.0%
!!! AATTTTATTATATTTTTAGT+AGG + chr3_1:11812141-11812160 Msa0348880:intron 5.0%
!!! TTTCATTTAAATTTTATATT+TGG - chr3_1:11812886-11812905 None:intergenic 5.0%
!!! TAATAATAAGAATTTAAAAT+AGG - chr3_1:11815821-11815840 None:intergenic 5.0%
!!! AAAAAATTGAAATTTTTTTA+TGG + chr3_1:11816028-11816047 Msa0348880:intron 5.0%
GAGTCTTCGATTGGGGGATA+TGG - chr3_1:11810569-11810588 None:intergenic 50.0%
GACCTGAGAGGGGATAGAAA+TGG - chr3_1:11810754-11810773 None:intergenic 50.0%
GTAACAAGACGACCTGAGAG+GGG - chr3_1:11810764-11810783 None:intergenic 50.0%
AATGGGTGGGACATCAATGG+GGG - chr3_1:11810897-11810916 None:intergenic 50.0%
CAATGGGTGGGACATCAATG+GGG - chr3_1:11810898-11810917 None:intergenic 50.0%
GACAATGGGTGGGACATCAA+TGG - chr3_1:11810900-11810919 None:intergenic 50.0%
! TCATGCACGTCGACTACAAC+AGG + chr3_1:11811363-11811382 Msa0348880:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG + chr3_1:11811515-11811534 Msa0348880:CDS 50.0%
TGCTTAGGTCGGTTGAAGAG+TGG + chr3_1:11811578-11811597 Msa0348880:CDS 50.0%
TATCCAGGTCAAGAAGGAGG+AGG + chr3_1:11811766-11811785 Msa0348880:CDS 50.0%
ATCCAGGTCAAGAAGGAGGA+GGG + chr3_1:11811767-11811786 Msa0348880:CDS 50.0%
GCAAAAAGGCGGACAAGACA+AGG + chr3_1:11812584-11812603 Msa0348880:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG - chr3_1:11814697-11814716 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - chr3_1:11814698-11814717 None:intergenic 50.0%
TAGTCGATCGGGCAAGGTAA+TGG - chr3_1:11815283-11815302 None:intergenic 50.0%
!! CATTTCTAGTCGATCGGGCA+AGG - chr3_1:11815289-11815308 None:intergenic 50.0%
GTCATCGCTGATGAGAAGGA+AGG - chr3_1:11815362-11815381 None:intergenic 50.0%
! ATGGGTTAAACCGCAAGCAG+TGG + chr3_1:11815958-11815977 Msa0348880:intron 50.0%
! GCGGCCACCCCAAAAATTTT+TGG - chr3_1:11815993-11816012 None:intergenic 50.0%
! GCGTGTTACTGTTCAGTGCA+AGG + chr3_1:11816171-11816190 Msa0348880:intron 50.0%
GAACACATTGTTGCTGGTGC+AGG + chr3_1:11816283-11816302 Msa0348880:CDS 50.0%
TCTGAAGGACACAACAGGGT+CGG - chr3_1:11816380-11816399 None:intergenic 50.0%
! GTCTCTCTGAAGGACACAAC+AGG - chr3_1:11816385-11816404 None:intergenic 50.0%
GTACATGGAAGCTAGACCGT+TGG + chr3_1:11816465-11816484 Msa0348880:CDS 50.0%
TCTGCAAGTCCATCCTCCAA+CGG - chr3_1:11816484-11816503 None:intergenic 50.0%
ACTTGCAGAGGCCATTGATG+AGG + chr3_1:11816495-11816514 Msa0348880:CDS 50.0%
CTTGCAGAGGCCATTGATGA+GGG + chr3_1:11816496-11816515 Msa0348880:CDS 50.0%
! GCCATTGATGAGGGCACAAT+AGG + chr3_1:11816505-11816524 Msa0348880:CDS 50.0%
! ATGAGGGCACAATAGGACCA+AGG + chr3_1:11816512-11816531 Msa0348880:CDS 50.0%
! TGAGGGCACAATAGGACCAA+GGG + chr3_1:11816513-11816532 Msa0348880:CDS 50.0%
TCCCTTCTTGTCCCACTCTT+GGG - chr3_1:11816544-11816563 None:intergenic 50.0%
TTCCCTTCTTGTCCCACTCT+TGG - chr3_1:11816545-11816564 None:intergenic 50.0%
GGGACAAGAAGGGAAATCCA+AGG + chr3_1:11816550-11816569 Msa0348880:CDS 50.0%
AGGCCAAGATCTGGGTCAAA+CGG + chr3_1:11816584-11816603 Msa0348880:CDS 50.0%
AACCCGTTTGACCCAGATCT+TGG - chr3_1:11816590-11816609 None:intergenic 50.0%
!! GTGAGTGCTGAAACGACGGT+AGG + chr3_1:11811478-11811497 Msa0348880:CDS 55.0%
TGTGTGTGTGTGTGTGTGGG+GGG - chr3_1:11814695-11814714 None:intergenic 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG - chr3_1:11814696-11814715 None:intergenic 55.0%
GGTGTGTGTGTGTGTGTGTG+TGG - chr3_1:11814699-11814718 None:intergenic 55.0%
GGTTAAACCGCAAGCAGTGG+CGG + chr3_1:11815961-11815980 Msa0348880:intron 55.0%
!!! TTTTCTCTGATGGCGGGCTG+CGG - chr3_1:11816012-11816031 None:intergenic 55.0%
CATGGAAGCTAGACCGTTGG+AGG + chr3_1:11816468-11816487 Msa0348880:CDS 55.0%
GAAGCTAGACCGTTGGAGGA+TGG + chr3_1:11816472-11816491 Msa0348880:CDS 55.0%
! GTTGGAGGATGGACTTGCAG+AGG + chr3_1:11816483-11816502 Msa0348880:CDS 55.0%
CAAGGGATGACCCCAAGAGT+GGG + chr3_1:11816530-11816549 Msa0348880:CDS 55.0%
ACCCCAAGAGTGGGACAAGA+AGG + chr3_1:11816539-11816558 Msa0348880:CDS 55.0%
CCCTTCTTGTCCCACTCTTG+GGG - chr3_1:11816543-11816562 None:intergenic 55.0%
CCCCAAGAGTGGGACAAGAA+GGG + chr3_1:11816540-11816559 Msa0348880:CDS 55.0%
GGCCAAGATCTGGGTCAAAC+GGG + chr3_1:11816585-11816604 Msa0348880:CDS 55.0%
GTGGGACATCAATGGGGGTG+AGG - chr3_1:11810892-11810911 None:intergenic 60.0%
CTCCCTCCTCCTTCTTGACC+TGG - chr3_1:11811772-11811791 None:intergenic 60.0%
TGTGTGTGTGTGTGTGGGGG+GGG - chr3_1:11814693-11814712 None:intergenic 60.0%
GTGTGTGTGTGTGTGTGGGG+GGG - chr3_1:11814694-11814713 None:intergenic 60.0%
CCACTCTTGGGGTCATCCCT+TGG - chr3_1:11816532-11816551 None:intergenic 60.0%
CCAAGGGATGACCCCAAGAG+TGG + chr3_1:11816529-11816548 Msa0348880:CDS 60.0%
TGTGTGTGTGTGTGGGGGGG+GGG - chr3_1:11814691-11814710 None:intergenic 65.0%
GTGTGTGTGTGTGTGGGGGG+GGG - chr3_1:11814692-11814711 None:intergenic 65.0%
TGTGTGTGTGTGGGGGGGGG+GGG - chr3_1:11814689-11814708 None:intergenic 70.0%
GTGTGTGTGTGTGGGGGGGG+GGG - chr3_1:11814690-11814709 None:intergenic 70.0%
! GCTGGCTCCGCCACTGCTTG+CGG - chr3_1:11815971-11815990 None:intergenic 70.0%
TGTGTGTGTGGGGGGGGGGG+GGG - chr3_1:11814687-11814706 None:intergenic 75.0%
GTGTGTGTGTGGGGGGGGGG+GGG - chr3_1:11814688-11814707 None:intergenic 75.0%
! TGTGTGTGGGGGGGGGGGGG+GGG - chr3_1:11814685-11814704 None:intergenic 80.0%
! GTGTGTGTGGGGGGGGGGGG+GGG - chr3_1:11814686-11814705 None:intergenic 80.0%
! TGTGTGGGGGGGGGGGGGGG+GGG - chr3_1:11814683-11814702 None:intergenic 85.0%
! GTGTGTGGGGGGGGGGGGGG+GGG - chr3_1:11814684-11814703 None:intergenic 85.0%
! TGTGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814681-11814700 None:intergenic 90.0%
! GTGTGGGGGGGGGGGGGGGG+GGG - chr3_1:11814682-11814701 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814679-11814698 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG - chr3_1:11814680-11814699 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 11810521 11816612 11810521 ID=Msa0348880;Name=Msa0348880
chr3_1 mRNA 11810521 11816612 11810521 ID=Msa0348880-mRNA-1;Parent=Msa0348880;Name=Msa0348880-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|2|0|589
chr3_1 exon 11810521 11811864 11810521 ID=Msa0348880-mRNA-1:exon:3128;Parent=Msa0348880-mRNA-1
chr3_1 exon 11816187 11816612 11816187 ID=Msa0348880-mRNA-1:exon:3129;Parent=Msa0348880-mRNA-1
chr3_1 CDS 11810521 11811864 11810521 ID=Msa0348880-mRNA-1:cds;Parent=Msa0348880-mRNA-1
chr3_1 CDS 11816187 11816612 11816187 ID=Msa0348880-mRNA-1:cds;Parent=Msa0348880-mRNA-1
Gene Sequence

>Msa0348880

ATGAGCATCCCTTCCCTAAACATCGTTTCTGCATGTTTCATTAAACCATATCCCCCAATCGAAGACTCAAACCAAATATGTCATTTAACACATTGGGATATTGCCATGTTATCTACACATTATAACCAAAAGGGACTTCTCTTCAAAAAACCAACATCATTACTAAACCAACAACATTTCATAGAGAACCTGGTGGACAAACTGAAACACTCCCTTTCCCTCACGCTTTTCCATTTCTATCCCCTCTCAGGTCGTCTTGTTACTAAAAAATCTGAAGATCCTCATTCTTATACTGTTTTCGTCGATTGCAAAAACAGTCCCGGAGCTAAATTTATTCATGCAACTTTAGATATTACCATAAATGATATCCTCACCCCCATTGATGTCCCACCCATTGTCCAATCGTTCTTTGATCATGACAAAGCAGTCAACCATGATGGTCACACCATGTCTTTGTTATCTATTCAATTCACAGAATTAGTAGATGGTGTTTTCATTGGTTGTTCCATGAATCATTGTCTCTGTGATGGAACATCTTATTGGAATTTCTTCAACACATTTTCTGAGATATTTCAAAATGATATTCCTGTTTATGGTCCCATTTCACATCAACCTATCCACAATAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTTCCATTTAAACATCACCACGAGTTTGTTCACACATATGGAATACCCATTTTAAAAGAGAGAATCTTCCATTTTTCAGTGGAATCTATAGCGAAACTTAAAGCAAAGGCAAATGCAGAGTGTAATACAAACAAAATTTCTTCGTTTCAATCTTTATCAGCATTAGTTTGGAGATCTATAACTCATGCACGTCGACTACAACAGGATCAGAGAACAACTTGCAAAATGGCTACAAACAACCGAACAAGAATGGAACCACCTCTTCCTAAGGAATATTTTGGGAATTCAATTTATGTAGTGAGTGCTGAAACGACGGTAGGAGAGTTGCTAGAGAATGATCTAGGATGGGCAGCATGGAAAATTCATGTGGCTATTGCAAATCATGATAATAAAGTGGTGCTTAGGTCGGTTGAAGAGTGGTTTCGTTCTCCTTTTTTGTATCGATTAGATTTGTTTTTTGATCCTTATACTGTGATGATAAGTGGTTCACCGAGGTTTAATACGTATGGAAATGAATTTGGAATGGGAAAAGCTTTGGCAGTTAGAAGTGGATATGCTAACAAATTTGATGGAAAAGTAATTTCATATCCAGGTCAAGAAGGAGGAGGGAGCATAGATCTTGAAGTGTGTCTTTCACCTGAGAAAATGATGGTGCTGGAGACAGATGAAGAGTTCATGAACTCATGCAAGGTTGCTTCAGATCTTCCTAAGCTTGGTGAAGGTCTCAAACGTCTTGCTAAGTCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGATTTACAGGATGATTTCATGGGTGGAGCTGAGATTATCAAATCCGACCCTGTTGTGTCCTTCAGAGAGACTGTTCTAGAGAGATCATGCCGCACTGTGATGAGTAAGTCACCCAACAAGCACAACAGATTGTACATGGAAGCTAGACCGTTGGAGGATGGACTTGCAGAGGCCATTGATGAGGGCACAATAGGACCAAGGGATGACCCCAAGAGTGGGACAAGAAGGGAAATCCAAGGAAAAAAAAACGAGGCCAAGATCTGGGTCAAACGGGTTTGA
Protein sequence

>Msa0348880

MSIPSLNIVSACFIKPYPPIEDSNQICHLTHWDIAMLSTHYNQKGLLFKKPTSLLNQQHFIENLVDKLKHSLSLTLFHFYPLSGRLVTKKSEDPHSYTVFVDCKNSPGAKFIHATLDITINDILTPIDVPPIVQSFFDHDKAVNHDGHTMSLLSIQFTELVDGVFIGCSMNHCLCDGTSYWNFFNTFSEIFQNDIPVYGPISHQPIHNRWFPEGYGPIINLPFKHHHEFVHTYGIPILKERIFHFSVESIAKLKAKANAECNTNKISSFQSLSALVWRSITHARRLQQDQRTTCKMATNNRTRMEPPLPKEYFGNSIYVVSAETTVGELLENDLGWAAWKIHVAIANHDNKVVLRSVEEWFRSPFLYRLDLFFDPYTVMISGSPRFNTYGNEFGMGKALAVRSGYANKFDGKVISYPGQEGGGSIDLEVCLSPEKMMVLETDEEFMNSCKVASDLPKLGEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDEGTIGPRDDPKSGTRREIQGKKNEAKIWVKRV*