Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484380 | XP_003610975.2 | 97.251 | 582 | 16 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484380 | sp|Q9SGW8|P4KG2_ARATH | 57.119 | 590 | 205 | 6 | 1 | 582 | 1 | 550 | 0.0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484380 | G7K9A8 | 97.251 | 582 | 16 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0484380 | 0.837742 | 4.344848e-57 | -8.615850e-47 |
| Msa0018000 | Msa0484380 | 0.807723 | 4.397015e-50 | -8.615850e-47 |
| Msa0024550 | Msa0484380 | 0.809984 | 1.443824e-50 | -8.615850e-47 |
| Msa0027820 | Msa0484380 | 0.800028 | 1.746815e-48 | -8.615850e-47 |
| Msa0030370 | Msa0484380 | 0.803604 | 3.219967e-49 | -8.615850e-47 |
| Msa0052480 | Msa0484380 | 0.810983 | 8.785679e-51 | -8.615850e-47 |
| Msa0054690 | Msa0484380 | 0.805535 | 1.273512e-49 | -8.615850e-47 |
| Msa0081520 | Msa0484380 | 0.835289 | 1.829873e-56 | -8.615850e-47 |
| Msa0081570 | Msa0484380 | 0.815084 | 1.108269e-51 | -8.615850e-47 |
| Msa0090400 | Msa0484380 | 0.808580 | 2.887692e-50 | -8.615850e-47 |
| Msa0092790 | Msa0484380 | 0.802490 | 5.472352e-49 | -8.615850e-47 |
| Msa0094780 | Msa0484380 | 0.823717 | 1.191967e-53 | -8.615850e-47 |
| Msa0120400 | Msa0484380 | 0.817396 | 3.370656e-52 | -8.615850e-47 |
| Msa0136650 | Msa0484380 | 0.816918 | 4.315431e-52 | -8.615850e-47 |
| Msa0137880 | Msa0484380 | 0.802711 | 4.927525e-49 | -8.615850e-47 |
| Msa0140280 | Msa0484380 | 0.803145 | 4.007988e-49 | -8.615850e-47 |
| Msa0173730 | Msa0484380 | 0.800584 | 1.345668e-48 | -8.615850e-47 |
| Msa0173890 | Msa0484380 | 0.819557 | 1.091267e-52 | -8.615850e-47 |
| Msa0174450 | Msa0484380 | 0.838689 | 2.476433e-57 | -8.615850e-47 |
| Msa0182190 | Msa0484380 | 0.805119 | 1.557102e-49 | -8.615850e-47 |
| Msa0182240 | Msa0484380 | 0.807092 | 5.985220e-50 | -8.615850e-47 |
| Msa0189900 | Msa0484380 | 0.805516 | 1.285331e-49 | -8.615850e-47 |
| Msa0223210 | Msa0484380 | 0.814126 | 1.805627e-51 | -8.615850e-47 |
| Msa0225100 | Msa0484380 | 0.814883 | 1.228183e-51 | -8.615850e-47 |
| Msa0225460 | Msa0484380 | 0.806484 | 8.044690e-50 | -8.615850e-47 |
| Msa0225680 | Msa0484380 | 0.803885 | 2.814977e-49 | -8.615850e-47 |
| Msa0225860 | Msa0484380 | 0.846135 | 2.626823e-59 | -8.615850e-47 |
| Msa0371170 | Msa0484380 | 0.811673 | 6.223544e-51 | -8.615850e-47 |
| Msa0378720 | Msa0484380 | 0.827463 | 1.543163e-54 | -8.615850e-47 |
| Msa0380620 | Msa0484380 | 0.806672 | 7.340757e-50 | -8.615850e-47 |
| Msa0428370 | Msa0484380 | 0.849170 | 3.839292e-60 | -8.615850e-47 |
| Msa0430260 | Msa0484380 | 0.824257 | 8.903717e-54 | -8.615850e-47 |
| Msa0430300 | Msa0484380 | 0.809264 | 2.061804e-50 | -8.615850e-47 |
| Msa0440500 | Msa0484380 | 0.812710 | 3.697600e-51 | -8.615850e-47 |
| Msa0474730 | Msa0484380 | 0.830597 | 2.685431e-55 | -8.615850e-47 |
| Msa0247940 | Msa0484380 | 0.828432 | 9.019353e-55 | -8.615850e-47 |
| Msa0258310 | Msa0484380 | 0.801132 | 1.040123e-48 | -8.615850e-47 |
| Msa0260510 | Msa0484380 | 0.813514 | 2.462841e-51 | -8.615850e-47 |
| Msa0264400 | Msa0484380 | 0.825926 | 3.591142e-54 | -8.615850e-47 |
| Msa0266180 | Msa0484380 | 0.821996 | 2.999750e-53 | -8.615850e-47 |
| Msa0267110 | Msa0484380 | 0.816818 | 4.545473e-52 | -8.615850e-47 |
| Msa0277180 | Msa0484380 | 0.804045 | 2.608421e-49 | -8.615850e-47 |
| Msa0279690 | Msa0484380 | 0.803725 | 3.039253e-49 | -8.615850e-47 |
| Msa0287740 | Msa0484380 | 0.815712 | 8.032493e-52 | -8.615850e-47 |
| Msa0298470 | Msa0484380 | 0.846881 | 1.644149e-59 | -8.615850e-47 |
| Msa0298500 | Msa0484380 | 0.813402 | 2.606860e-51 | -8.615850e-47 |
| Msa0300270 | Msa0484380 | 0.826865 | 2.145682e-54 | -8.615850e-47 |
| Msa0300320 | Msa0484380 | 0.827716 | 1.341422e-54 | -8.615850e-47 |
| Msa0302290 | Msa0484380 | 0.816527 | 5.281806e-52 | -8.615850e-47 |
| Msa0321620 | Msa0484380 | 0.809419 | 1.910009e-50 | -8.615850e-47 |
| Msa0330380 | Msa0484380 | 0.846579 | 1.988391e-59 | -8.615850e-47 |
| Msa0337700 | Msa0484380 | 0.823594 | 1.273670e-53 | -8.615850e-47 |
| Msa0339650 | Msa0484380 | 0.828329 | 9.553296e-55 | -8.615850e-47 |
| Msa0340500 | Msa0484380 | 0.835673 | 1.463202e-56 | -8.615850e-47 |
| Msa0348880 | Msa0484380 | 0.819191 | 1.321987e-52 | -8.615850e-47 |
| Msa0483100 | Msa0484380 | 0.818366 | 2.035111e-52 | -8.615850e-47 |
| Msa0484380 | Msa0500380 | 0.801077 | 1.067141e-48 | -8.615850e-47 |
| Msa0484380 | Msa0523000 | 0.802811 | 4.700344e-49 | -8.615850e-47 |
| Msa0484380 | Msa0530780 | 0.803067 | 4.161001e-49 | -8.615850e-47 |
| Msa0484380 | Msa0538500 | 0.805859 | 1.089358e-49 | -8.615850e-47 |
| Msa0484380 | Msa0548470 | 0.820127 | 8.082935e-53 | -8.615850e-47 |
| Msa0484380 | Msa0580370 | 0.861006 | 1.388704e-63 | -8.615850e-47 |
| Msa0484380 | Msa0582480 | 0.818805 | 1.617777e-52 | -8.615850e-47 |
| Msa0484380 | Msa0586220 | 0.823860 | 1.103473e-53 | -8.615850e-47 |
| Msa0484380 | Msa0597790 | 0.808982 | 2.369623e-50 | -8.615850e-47 |
| Msa0484380 | Msa0626450 | 0.829920 | 3.930028e-55 | -8.615850e-47 |
| Msa0484380 | Msa0626490 | 0.827649 | 1.392097e-54 | -8.615850e-47 |
| Msa0484380 | Msa0626510 | 0.800469 | 1.420692e-48 | -8.615850e-47 |
| Msa0484380 | Msa0638480 | 0.813563 | 2.403078e-51 | -8.615850e-47 |
| Msa0484380 | Msa0644410 | 0.816364 | 5.744037e-52 | -8.615850e-47 |
| Msa0484380 | Msa0652170 | 0.806009 | 1.012990e-49 | -8.615850e-47 |
| Msa0484380 | Msa0661150 | 0.800505 | 1.396864e-48 | -8.615850e-47 |
| Msa0484380 | Msa0664090 | 0.801738 | 7.813859e-49 | -8.615850e-47 |
| Msa0484380 | Msa0664150 | 0.802179 | 6.341661e-49 | -8.615850e-47 |
| Msa0484380 | Msa0664600 | 0.826913 | 2.089165e-54 | -8.615850e-47 |
| Msa0484380 | Msa0670100 | 0.803083 | 4.129049e-49 | -8.615850e-47 |
| Msa0484380 | Msa0697160 | 0.815139 | 1.077292e-51 | -8.615850e-47 |
| Msa0484380 | Msa0721080 | 0.820241 | 7.610723e-53 | -8.615850e-47 |
| Msa0484380 | Msa0733390 | 0.812609 | 3.889443e-51 | -8.615850e-47 |
| Msa0484380 | Msa0735780 | 0.833196 | 6.127934e-56 | -8.615850e-47 |
| Msa0484380 | Msa0741220 | 0.829852 | 4.082300e-55 | -8.615850e-47 |
| Msa0484380 | Msa0765240 | 0.812497 | 4.115305e-51 | -8.615850e-47 |
| Msa0484380 | Msa0766350 | 0.809738 | 1.630981e-50 | -8.615850e-47 |
| Msa0484380 | Msa0768990 | 0.805669 | 1.193769e-49 | -8.615850e-47 |
| Msa0484380 | Msa0769180 | 0.800557 | 1.363136e-48 | -8.615850e-47 |
| Msa0484380 | Msa0780270 | 0.825029 | 5.855727e-54 | -8.615850e-47 |
| Msa0484380 | Msa0795870 | 0.852531 | 4.344098e-61 | -8.615850e-47 |
| Msa0484380 | Msa0824450 | 0.805186 | 1.507433e-49 | -8.615850e-47 |
| Msa0484380 | Msa0833650 | 0.856228 | 3.706850e-62 | -8.615850e-47 |
| Msa0484380 | Msa0861510 | 0.818376 | 2.024239e-52 | -8.615850e-47 |
| Msa0484380 | Msa0861600 | 0.822003 | 2.988730e-53 | -8.615850e-47 |
| Msa0484380 | Msa0861850 | 0.800949 | 1.133809e-48 | -8.615850e-47 |
| Msa0484380 | Msa0873730 | 0.800134 | 1.661723e-48 | -8.615850e-47 |
| Msa0484380 | Msa0902510 | 0.816268 | 6.036065e-52 | -8.615850e-47 |
| Msa0484380 | Msa0967380 | 0.827875 | 1.228876e-54 | -8.615850e-47 |
| Msa0484380 | Msa0967870 | 0.808017 | 3.807838e-50 | -8.615850e-47 |
| Msa0484380 | Msa1019430 | 0.800481 | 1.412299e-48 | -8.615850e-47 |
| Msa0484380 | Msa1019470 | 0.828446 | 8.952138e-55 | -8.615850e-47 |
| Msa0484380 | Msa1020480 | 0.808050 | 3.746629e-50 | -8.615850e-47 |
| Msa0484380 | Msa1020510 | 0.813740 | 2.196737e-51 | -8.615850e-47 |
| Msa0484380 | Msa1103990 | 0.819480 | 1.136217e-52 | -8.615850e-47 |
| Msa0484380 | Msa1132840 | 0.858373 | 8.613957e-63 | -8.615850e-47 |
| Msa0484380 | Msa1175180 | 0.802225 | 6.205536e-49 | -8.615850e-47 |
| Msa0484380 | Msa1186020 | 0.829237 | 5.758261e-55 | -8.615850e-47 |
| Msa0484380 | Msa1193170 | 0.810630 | 1.047692e-50 | -8.615850e-47 |
| Msa0484380 | Msa1198250 | 0.811061 | 8.451072e-51 | -8.615850e-47 |
| Msa0484380 | Msa1200890 | 0.832992 | 6.889082e-56 | -8.615850e-47 |
| Msa0484380 | Msa1208950 | 0.834742 | 2.513291e-56 | -8.615850e-47 |
| Msa0484380 | Msa1215870 | 0.816607 | 5.069233e-52 | -8.615850e-47 |
| Msa0484380 | Msa1224930 | 0.805928 | 1.053190e-49 | -8.615850e-47 |
| Msa0484380 | Msa1228200 | 0.804693 | 1.911195e-49 | -8.615850e-47 |
| Msa0484380 | Msa1236410 | 0.808169 | 3.534707e-50 | -8.615850e-47 |
| Msa0484380 | Msa1252780 | 0.807764 | 4.309087e-50 | -8.615850e-47 |
| Msa0484380 | Msa1267770 | 0.811645 | 6.312204e-51 | -8.615850e-47 |
| Msa0484380 | Msa1267900 | 0.813915 | 2.010076e-51 | -8.615850e-47 |
| Msa0484380 | Msa1277150 | 0.800613 | 1.327372e-48 | -8.615850e-47 |
| Msa0484380 | Msa1297230 | 0.802369 | 5.796285e-49 | -8.615850e-47 |
| Msa0484380 | Msa1307630 | 0.815776 | 7.773759e-52 | -8.615850e-47 |
| Msa0484380 | Msa1320670 | 0.816975 | 4.190015e-52 | -8.615850e-47 |
| Msa0484380 | Msa1348090 | 0.822772 | 1.980397e-53 | -8.615850e-47 |
| Msa0484380 | Msa1356830 | 0.817879 | 2.622962e-52 | -8.615850e-47 |
| Msa0484380 | Msa1359690 | 0.813636 | 2.315032e-51 | -8.615850e-47 |
| Msa0484380 | Msa1392580 | 0.815479 | 9.053217e-52 | -8.615850e-47 |
| Msa0484380 | Msa1396030 | 0.803109 | 4.077780e-49 | -8.615850e-47 |
| Msa0484380 | Msa1397400 | 0.814396 | 1.574313e-51 | -8.615850e-47 |
| Msa0484380 | Msa1420950 | 0.803211 | 3.884968e-49 | -8.615850e-47 |
| Msa0484380 | Msa1427200 | 0.821596 | 3.712368e-53 | -8.615850e-47 |
| Msa0484380 | Msa1437640 | 0.810125 | 1.346207e-50 | -8.615850e-47 |
| Msa0484380 | Msa1437940 | 0.807270 | 5.487886e-50 | -8.615850e-47 |
| Msa0484380 | Msa1440880 | 0.810103 | 1.361094e-50 | -8.615850e-47 |
| Msa0484380 | Msa1440960 | 0.832520 | 9.020413e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484380 | MtrunA17_Chr5g0396531 | 97.251 | 582 | 16 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1171 |
| Msa0484380 | MtrunA17_Chr8g0388301 | 67.454 | 593 | 160 | 6 | 18 | 582 | 6 | 593 | 0.0 | 812 |
| Msa0484380 | MtrunA17_Chr8g0346901 | 55.446 | 606 | 230 | 12 | 1 | 581 | 1 | 591 | 0.0 | 662 |
| Msa0484380 | MtrunA17_Chr3g0126781 | 56.261 | 583 | 238 | 9 | 3 | 577 | 1 | 574 | 0.0 | 640 |
| Msa0484380 | MtrunA17_Chr7g0275661 | 56.000 | 575 | 223 | 11 | 23 | 580 | 29 | 590 | 0.0 | 625 |
| Msa0484380 | MtrunA17_Chr8g0366091 | 32.456 | 456 | 249 | 11 | 109 | 556 | 43 | 447 | 7.01e-64 | 221 |
| Msa0484380 | MtrunA17_Chr5g0420771 | 40.635 | 315 | 162 | 7 | 254 | 556 | 152 | 453 | 2.00e-62 | 217 |
| Msa0484380 | MtrunA17_Chr7g0220391 | 38.415 | 328 | 174 | 7 | 261 | 577 | 155 | 465 | 6.75e-60 | 210 |
| Msa0484380 | MtrunA17_Chr7g0255481 | 38.889 | 288 | 144 | 7 | 261 | 537 | 99 | 365 | 1.62e-58 | 201 |
| Msa0484380 | MtrunA17_Chr6g0475961 | 25.166 | 151 | 107 | 3 | 33 | 182 | 6 | 151 | 4.49e-11 | 62.4 |
| Msa0484380 | MtrunA17_Chr4g0041751 | 25.166 | 151 | 107 | 3 | 33 | 182 | 3 | 148 | 5.59e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484380 | AT2G46500.1 | 55.594 | 581 | 233 | 6 | 1 | 577 | 1 | 560 | 0.0 | 653 |
| Msa0484380 | AT2G46500.2 | 55.594 | 581 | 233 | 6 | 1 | 577 | 1 | 560 | 0.0 | 653 |
| Msa0484380 | AT5G24240.1 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 611 |
| Msa0484380 | AT5G24240.2 | 52.551 | 588 | 256 | 7 | 1 | 581 | 1 | 572 | 0.0 | 611 |
| Msa0484380 | AT2G46500.3 | 50.000 | 418 | 184 | 6 | 1 | 414 | 1 | 397 | 4.81e-133 | 395 |
| Msa0484380 | AT2G03890.1 | 39.091 | 330 | 177 | 6 | 238 | 556 | 139 | 455 | 7.01e-64 | 221 |
| Msa0484380 | AT1G13640.1 | 41.869 | 289 | 143 | 5 | 261 | 537 | 154 | 429 | 4.77e-63 | 219 |
| Msa0484380 | AT1G13640.2 | 41.869 | 289 | 143 | 5 | 261 | 537 | 154 | 429 | 4.77e-63 | 219 |
| Msa0484380 | AT2G40850.1 | 37.941 | 340 | 179 | 9 | 243 | 565 | 94 | 418 | 1.10e-62 | 216 |
| Msa0484380 | AT1G26270.1 | 40.604 | 298 | 156 | 5 | 248 | 537 | 145 | 429 | 2.34e-62 | 217 |
| Msa0484380 | AT3G56600.1 | 38.438 | 320 | 166 | 6 | 249 | 555 | 88 | 389 | 8.94e-62 | 213 |
| Msa0484380 | AT3G56600.3 | 38.438 | 320 | 166 | 6 | 249 | 555 | 88 | 389 | 8.94e-62 | 213 |
| Msa0484380 | AT3G56600.2 | 38.438 | 320 | 166 | 6 | 249 | 555 | 85 | 386 | 9.79e-62 | 213 |
| Msa0484380 | AT2G03890.2 | 40.562 | 249 | 126 | 4 | 318 | 556 | 99 | 335 | 6.67e-49 | 178 |
| Msa0484380 | AT1G27570.1 | 30.597 | 268 | 149 | 9 | 328 | 580 | 396 | 641 | 4.21e-25 | 110 |
| Msa0484380 | AT1G27570.2 | 30.597 | 268 | 149 | 9 | 328 | 580 | 387 | 632 | 4.61e-25 | 110 |
| Msa0484380 | AT3G43950.1 | 33.803 | 142 | 77 | 5 | 331 | 468 | 78 | 206 | 1.70e-11 | 64.7 |
| Msa0484380 | AT2G35635.1 | 26.712 | 146 | 102 | 3 | 36 | 181 | 7 | 147 | 3.14e-11 | 62.4 |
Find 140 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTGGTAGCAATGATTTC+TGG | 0.116857 | 3_4:+1699662 | None:intergenic |
| GTGGGGATTGTGGCTCTTTA+AGG | 0.158403 | 3_4:-1701071 | Msa0484380:CDS |
| GAAGAAAACCAGTCCATATT+TGG | 0.218354 | 3_4:-1699512 | Msa0484380:three_prime_UTR |
| GCACATTTGATTGGCTTTAC+TGG | 0.236333 | 3_4:-1699936 | Msa0484380:CDS |
| ATAGAGCTTCTGAAATATTA+TGG | 0.291106 | 3_4:-1699844 | Msa0484380:CDS |
| TAATAATCCGCGTGGATTGC+CGG | 0.312705 | 3_4:-1701286 | Msa0484380:CDS |
| AGAAGTTGCGGCTTATATAT+TGG | 0.319276 | 3_4:-1701205 | Msa0484380:CDS |
| TCCATATTTGGATGGACTTA+AGG | 0.329114 | 3_4:-1699500 | Msa0484380:three_prime_UTR |
| TGGTAAGAGGTGTTCTAATC+AGG | 0.334243 | 3_4:-1699458 | Msa0484380:three_prime_UTR |
| TAATGGTAATGTTGTTCATT+TGG | 0.334613 | 3_4:-1701919 | Msa0484380:CDS |
| GCCTGGTAGCAATGATTTCT+GGG | 0.343431 | 3_4:+1699663 | None:intergenic |
| ACCTTAAGTCCATCCAAATA+TGG | 0.345436 | 3_4:+1699499 | None:intergenic |
| TCCGCGTGGATTGCCGGTTT+CGG | 0.363471 | 3_4:-1701280 | Msa0484380:CDS |
| AATTTGAGTTTCAGATTGAT+AGG | 0.364523 | 3_4:-1701842 | Msa0484380:CDS |
| TGGTGTTCCGCCTACGGTTA+TGG | 0.367323 | 3_4:-1701130 | Msa0484380:CDS |
| TTGAAGATTGCACATTTGAT+TGG | 0.370246 | 3_4:-1699945 | Msa0484380:CDS |
| ATCCTAGGGTTCACGAAAAT+CGG | 0.375668 | 3_4:+1701483 | None:intergenic |
| TCCGAAGGCTGGACCGCGTT+TGG | 0.376463 | 3_4:-1701178 | Msa0484380:CDS |
| CCCTCACCATTCACCGAAAC+CGG | 0.379422 | 3_4:+1701267 | None:intergenic |
| GCCATTGGTTCCTCATCAAT+TGG | 0.383037 | 3_4:+1701312 | None:intergenic |
| CGAATTTGTATCGCAGATCA+TGG | 0.384306 | 3_4:-1699620 | Msa0484380:CDS |
| GCTGGACCGCGTTTGGTGTC+TGG | 0.390089 | 3_4:-1701171 | Msa0484380:CDS |
| GGATTGCCGGTTTCGGTGAA+TGG | 0.392525 | 3_4:-1701273 | Msa0484380:CDS |
| ATGATAGATGCAACTTTCAA+TGG | 0.393750 | 3_4:-1701435 | Msa0484380:CDS |
| GATGGTAATTGTGAGGATAT+TGG | 0.395024 | 3_4:-1701006 | Msa0484380:CDS |
| TTGAAGAGAGGGACAAAGGT+TGG | 0.402804 | 3_4:-1701243 | Msa0484380:CDS |
| AAACAATATACGGAGGTGAT+TGG | 0.406137 | 3_4:+1699397 | None:intergenic |
| CAGAAGTTTATGAGTAATGA+TGG | 0.410311 | 3_4:-1701024 | Msa0484380:CDS |
| TCAACTGTATCGGGAGAGTA+TGG | 0.410892 | 3_4:+1699898 | None:intergenic |
| GAGCCACAATCCCCACCATC+AGG | 0.414679 | 3_4:+1701078 | None:intergenic |
| AGACAATAACCATGATCAAT+TGG | 0.415282 | 3_4:+1700856 | None:intergenic |
| GTTCCCTCAGAAGATCTAAC+AGG | 0.417109 | 3_4:+1701393 | None:intergenic |
| TAGGAATTGTATTAAAAGAA+AGG | 0.420136 | 3_4:-1701799 | Msa0484380:CDS |
| AACAATATACGGAGGTGATT+GGG | 0.423869 | 3_4:+1699398 | None:intergenic |
| AGGAATTGTATTAAAAGAAA+GGG | 0.424400 | 3_4:-1701798 | Msa0484380:CDS |
| GAATCAGGATGAGGTTGTTA+AGG | 0.426840 | 3_4:-1701544 | Msa0484380:CDS |
| ATAGGAACGTTGCACATCTT+AGG | 0.430624 | 3_4:-1701818 | Msa0484380:CDS |
| AAATGGTGACTTACTTTCTC+AGG | 0.430834 | 3_4:+1700832 | None:intergenic |
| AGTGTTCTAGCACTCTCAAC+TGG | 0.433384 | 3_4:+1699811 | None:intergenic |
| ACCAAACGCGGTCCAGCCTT+CGG | 0.433444 | 3_4:+1701177 | None:intergenic |
| CTTAAGGTTGTTGTATAAGA+AGG | 0.434772 | 3_4:-1699484 | Msa0484380:three_prime_UTR |
| ATACTCTCTGGATGCTGAAA+AGG | 0.444836 | 3_4:-1699869 | Msa0484380:CDS |
| GCGAGATAATTCTCTTCCAT+TGG | 0.447190 | 3_4:+1701974 | None:intergenic |
| GAATTTGAATAATCAGAATC+AGG | 0.447450 | 3_4:-1701559 | Msa0484380:CDS |
| CTCTTTAAGGATGGATCATA+AGG | 0.454269 | 3_4:-1701058 | Msa0484380:CDS |
| CTGCTCATTCCAATTGATCA+TGG | 0.456539 | 3_4:-1700865 | Msa0484380:CDS |
| AGCTTCTGAAATATTATGGT+TGG | 0.458037 | 3_4:-1699840 | Msa0484380:CDS |
| CAGATCATGGATTCCCGCCT+TGG | 0.466401 | 3_4:-1699607 | Msa0484380:CDS |
| CCGGTTTCGGTGAATGGTGA+GGG | 0.469852 | 3_4:-1701267 | Msa0484380:CDS |
| AAAGAGTACGGTGTAACTAA+TGG | 0.470997 | 3_4:-1701936 | Msa0484380:CDS |
| TACCCTGATGGTGGGGATTG+TGG | 0.474991 | 3_4:-1701081 | Msa0484380:CDS |
| GCTTCTGAAATATTATGGTT+GGG | 0.475469 | 3_4:-1699839 | Msa0484380:CDS |
| CGCGGATTATTAACCGCCAT+TGG | 0.475646 | 3_4:+1701297 | None:intergenic |
| TGGTGTAACTGCTCCGTCTA+CGG | 0.482678 | 3_4:+1702088 | None:intergenic |
| TATATGTAATCAACTGTATC+GGG | 0.487936 | 3_4:+1699889 | None:intergenic |
| GTTAGATCTTCTGAGGGAAC+AGG | 0.492026 | 3_4:-1701390 | Msa0484380:CDS |
| ATATTGGATCATCCGAAGGC+TGG | 0.493035 | 3_4:-1701189 | Msa0484380:CDS |
| TATAAGAAGGTGATGGTAAG+AGG | 0.499120 | 3_4:-1699471 | Msa0484380:three_prime_UTR |
| CGTTTAATTACCCTGATGGT+GGG | 0.504414 | 3_4:-1701089 | Msa0484380:CDS |
| CTGATATACGTCACCGTAGA+CGG | 0.506918 | 3_4:-1702101 | Msa0484380:CDS |
| GTATATGTAATCAACTGTAT+CGG | 0.506999 | 3_4:+1699888 | None:intergenic |
| AAATCAGATTCCTCCGTGCC+TGG | 0.508144 | 3_4:+1699646 | None:intergenic |
| GGGATTGAAGAGAGGGACAA+AGG | 0.509599 | 3_4:-1701247 | Msa0484380:CDS |
| TTTCGATAGCTCACCAAGGC+GGG | 0.510744 | 3_4:+1699594 | None:intergenic |
| AAGCAAAATTTAGTTTCCAA+TGG | 0.511426 | 3_4:-1701990 | Msa0484380:CDS |
| TGTTCTAATCAGGGACATAT+AGG | 0.511537 | 3_4:-1699448 | Msa0484380:three_prime_UTR |
| GAACAAAGAATCAGTGATTG+AGG | 0.513649 | 3_4:-1699701 | Msa0484380:CDS |
| TTGTTTAGAAAAGAGTCAAA+TGG | 0.514272 | 3_4:-1700895 | Msa0484380:CDS |
| CGATTGCATCAGTGAAAATG+AGG | 0.515256 | 3_4:-1702043 | Msa0484380:CDS |
| GTAATAATATGCAATCTCTT+CGG | 0.516077 | 3_4:+1699424 | None:intergenic |
| ATGGTGAGGGATTGAAGAGA+GGG | 0.516819 | 3_4:-1701254 | Msa0484380:CDS |
| GGATTGTGGCTCTTTAAGGA+TGG | 0.517199 | 3_4:-1701067 | Msa0484380:CDS |
| TAAGAATGGCGAATGCAGAT+AGG | 0.518671 | 3_4:-1700933 | Msa0484380:CDS |
| GGTCTCACTCCCTATGCCAT+TGG | 0.519954 | 3_4:-1699748 | Msa0484380:CDS |
| AGTTGATTACATATACTCTC+TGG | 0.522946 | 3_4:-1699881 | Msa0484380:CDS |
| GCGAATGCAGATAGGCATGC+AGG | 0.523425 | 3_4:-1700925 | Msa0484380:CDS |
| GCCGGTTTCGGTGAATGGTG+AGG | 0.524007 | 3_4:-1701268 | Msa0484380:CDS |
| CATTGGAAGCATCATGTGTA+GGG | 0.527209 | 3_4:-1699731 | Msa0484380:CDS |
| CATGATGCTTCCAATGGCAT+AGG | 0.534342 | 3_4:+1699738 | None:intergenic |
| ATCTTATGCACCTCTTGCAC+AGG | 0.541451 | 3_4:+1700970 | None:intergenic |
| AAGGTTATAGAACAACCCTC+TGG | 0.544988 | 3_4:-1701525 | Msa0484380:CDS |
| TGTATTAAAAGAAAGGGGAA+AGG | 0.545961 | 3_4:-1701792 | Msa0484380:CDS |
| TTGGTGTCTGGTGAAGCGAT+TGG | 0.546477 | 3_4:-1701159 | Msa0484380:CDS |
| AGTTTCAGATTGATAGGCAT+AGG | 0.546957 | 3_4:-1701836 | Msa0484380:CDS |
| GGAATTGTATTAAAAGAAAG+GGG | 0.547344 | 3_4:-1701797 | Msa0484380:CDS |
| AGGAGCTGTGAGAGAAGTTG+CGG | 0.549114 | 3_4:-1701217 | Msa0484380:CDS |
| AAGTCCATCCAAATATGGAC+TGG | 0.551955 | 3_4:+1699504 | None:intergenic |
| CAGTGTGCTTGATATAAGAA+TGG | 0.555819 | 3_4:-1700947 | Msa0484380:CDS |
| GAAATCATTGCTACCAGGCA+CGG | 0.558584 | 3_4:-1699659 | Msa0484380:CDS |
| TAAACCTGTTAGATCTTCTG+AGG | 0.559006 | 3_4:-1701397 | Msa0484380:CDS |
| TTAAGGATGGATCATAAGGT+GGG | 0.561581 | 3_4:-1701054 | Msa0484380:CDS |
| AGAGGGACAAAGGTTGGAGA+AGG | 0.563732 | 3_4:-1701237 | Msa0484380:CDS |
| CCATTGGAAGCATCATGTGT+AGG | 0.565698 | 3_4:-1699732 | Msa0484380:CDS |
| GAATAATCAGAATCAGGATG+AGG | 0.566712 | 3_4:-1701553 | Msa0484380:CDS |
| AATGGTGAGGGATTGAAGAG+AGG | 0.566744 | 3_4:-1701255 | Msa0484380:CDS |
| TCAGATTCTAACACACGCAT+TGG | 0.572045 | 3_4:+1702068 | None:intergenic |
| GCGTTTAATTACCCTGATGG+TGG | 0.572883 | 3_4:-1701090 | Msa0484380:CDS |
| TACTTCATGCAAGATTTCAA+AGG | 0.573102 | 3_4:-1701360 | Msa0484380:CDS |
| GCCAATTGATGAGGAACCAA+TGG | 0.574717 | 3_4:-1701313 | Msa0484380:CDS |
| TACGGTGACGTATATCAGAA+TGG | 0.576837 | 3_4:+1702106 | None:intergenic |
| GCCCAGAAATCATTGCTACC+AGG | 0.583800 | 3_4:-1699664 | Msa0484380:CDS |
| GGTAAGAGGTGTTCTAATCA+GGG | 0.586502 | 3_4:-1699457 | Msa0484380:three_prime_UTR |
| ATGATGCTTCCAATGGCATA+GGG | 0.588673 | 3_4:+1699739 | None:intergenic |
| CCTACACATGATGCTTCCAA+TGG | 0.590155 | 3_4:+1699732 | None:intergenic |
| AGATCTTCTGAGGGAACAGG+TGG | 0.592366 | 3_4:-1701387 | Msa0484380:CDS |
| GTTTAATTACCCTGATGGTG+GGG | 0.592966 | 3_4:-1701088 | Msa0484380:CDS |
| CATGCAAGATTTCAAAGGTG+TGG | 0.594948 | 3_4:-1701355 | Msa0484380:CDS |
| GAAGCGTTTAATTACCCTGA+TGG | 0.595781 | 3_4:-1701093 | Msa0484380:CDS |
| AAAACCAGTCCATATTTGGA+TGG | 0.597398 | 3_4:-1699508 | Msa0484380:three_prime_UTR |
| TCAACAACATTGTGGAAATG+CGG | 0.599955 | 3_4:+1699788 | None:intergenic |
| TTTAAGGATGGATCATAAGG+TGG | 0.601614 | 3_4:-1701055 | Msa0484380:CDS |
| GTTGTTGTATAAGAAGGTGA+TGG | 0.602695 | 3_4:-1699478 | Msa0484380:three_prime_UTR |
| CGAATGCAGATAGGCATGCA+GGG | 0.605455 | 3_4:-1700924 | Msa0484380:CDS |
| TTATATATTGGATCATCCGA+AGG | 0.606955 | 3_4:-1701193 | Msa0484380:CDS |
| GAGTATGGCTGACGTGCTTG+AGG | 0.611194 | 3_4:+1699913 | None:intergenic |
| TCTATCATATCCCATAGGAA+AGG | 0.618347 | 3_4:+1701450 | None:intergenic |
| AAACCTGTTAGATCTTCTGA+GGG | 0.622266 | 3_4:-1701396 | Msa0484380:CDS |
| AGCCACAATCCCCACCATCA+GGG | 0.637152 | 3_4:+1701079 | None:intergenic |
| TTGCATCTATCATATCCCAT+AGG | 0.637801 | 3_4:+1701445 | None:intergenic |
| AATGTGGCGATGAAAGAGTA+CGG | 0.637828 | 3_4:-1701948 | Msa0484380:CDS |
| TAAGGATGGATCATAAGGTG+GGG | 0.653203 | 3_4:-1701053 | Msa0484380:CDS |
| TCTTGCACAGGAAAAGCACC+AGG | 0.657475 | 3_4:+1700982 | None:intergenic |
| AATTGATGAGGAACCAATGG+CGG | 0.662251 | 3_4:-1701310 | Msa0484380:CDS |
| TGTGAGGACAATGTGTGGGA+AGG | 0.662882 | 3_4:-1701865 | Msa0484380:CDS |
| ATTGTTGTGAGGACAATGTG+TGG | 0.666886 | 3_4:-1701870 | Msa0484380:CDS |
| TTGTTGTGAGGACAATGTGT+GGG | 0.668421 | 3_4:-1701869 | Msa0484380:CDS |
| CACCGCACCATAACCGTAGG+CGG | 0.670788 | 3_4:+1701123 | None:intergenic |
| AATTGTGAGGATATTGGACC+TGG | 0.674707 | 3_4:-1701000 | Msa0484380:CDS |
| AGAATTATCTCGCAACAATG+TGG | 0.674854 | 3_4:-1701964 | Msa0484380:CDS |
| TTCCGCCTACGGTTATGGTG+CGG | 0.680938 | 3_4:-1701125 | Msa0484380:CDS |
| ATTTCGATAGCTCACCAAGG+CGG | 0.684384 | 3_4:+1699593 | None:intergenic |
| ATCATTGCTACCAGGCACGG+AGG | 0.695943 | 3_4:-1699656 | Msa0484380:CDS |
| TGGATTCGCTTGAACAACGA+CGG | 0.702171 | 3_4:+1702126 | None:intergenic |
| AAACACCGCACCATAACCGT+AGG | 0.703540 | 3_4:+1701120 | None:intergenic |
| GATCTTCTGAGGGAACAGGT+GGG | 0.712393 | 3_4:-1701386 | Msa0484380:CDS |
| ATGGCGGTTAATAATCCGCG+TGG | 0.713372 | 3_4:-1701294 | Msa0484380:CDS |
| GAGTAATGATGGTAATTGTG+AGG | 0.714535 | 3_4:-1701013 | Msa0484380:CDS |
| ACCGAAACCGGCAATCCACG+CGG | 0.729544 | 3_4:+1701279 | None:intergenic |
| TCTATTTCGATAGCTCACCA+AGG | 0.754765 | 3_4:+1699590 | None:intergenic |
| GCTTCACCAGACACCAAACG+CGG | 0.759039 | 3_4:+1701165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATCTTATTGTTAAAAAAT+CGG | - | chr3_4:1699896-1699915 | Msa0484380:CDS | 15.0% |
| !!! | TTTTCCGATTCTTTTAAAAT+CGG | + | chr3_4:1699396-1699415 | None:intergenic | 20.0% |
| !! | TAGGAATTGTATTAAAAGAA+AGG | - | chr3_4:1699761-1699780 | Msa0484380:CDS | 20.0% |
| !! | AGGAATTGTATTAAAAGAAA+GGG | - | chr3_4:1699762-1699781 | Msa0484380:CDS | 20.0% |
| !! | AATAAAACAAGAATGTGAAA+TGG | + | chr3_4:1700748-1700767 | None:intergenic | 20.0% |
| !! | AAAACATTATAATACTGCAT+AGG | + | chr3_4:1700773-1700792 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTATGTTCTGTT+TGG | - | chr3_4:1700785-1700804 | Msa0484380:intron | 20.0% |
| !! | TATACAAAGTTAGCATAAAA+AGG | + | chr3_4:1701004-1701023 | None:intergenic | 20.0% |
| !! | CCAATAAAAATATATCTCTT+GGG | + | chr3_4:1701147-1701166 | None:intergenic | 20.0% |
| !! | ACCAATAAAAATATATCTCT+TGG | + | chr3_4:1701148-1701167 | None:intergenic | 20.0% |
| !!! | TAACCATGTTTGTTATATTT+TGG | - | chr3_4:1701211-1701230 | Msa0484380:CDS | 20.0% |
| !! | TTATGAACTTAATATGTCAT+AGG | - | chr3_4:1701522-1701541 | Msa0484380:CDS | 20.0% |
| !! | AAGCAAAATTTAGTTTCCAA+TGG | - | chr3_4:1699570-1699589 | Msa0484380:three_prime_UTR | 25.0% |
| !! | TAATGGTAATGTTGTTCATT+TGG | - | chr3_4:1699641-1699660 | Msa0484380:CDS | 25.0% |
| !! | ATATGATTTTCATTGTTGTG+AGG | - | chr3_4:1699679-1699698 | Msa0484380:CDS | 25.0% |
| !! | AATTTGAGTTTCAGATTGAT+AGG | - | chr3_4:1699718-1699737 | Msa0484380:CDS | 25.0% |
| ! | GGAATTGTATTAAAAGAAAG+GGG | - | chr3_4:1699763-1699782 | Msa0484380:CDS | 25.0% |
| !!! | TGCTACTTTTGTTCATAATA+AGG | - | chr3_4:1699929-1699948 | Msa0484380:CDS | 25.0% |
| ! | GAATTTGAATAATCAGAATC+AGG | - | chr3_4:1700001-1700020 | Msa0484380:intron | 25.0% |
| ! | AACAAAAAATCAAAACCAGA+GGG | + | chr3_4:1700053-1700072 | None:intergenic | 25.0% |
| ! | TAACAAAAAATCAAAACCAG+AGG | + | chr3_4:1700054-1700073 | None:intergenic | 25.0% |
| ! | ACTTTCAATGGTTTGAAAAA+TGG | - | chr3_4:1700137-1700156 | Msa0484380:intron | 25.0% |
| ! | TTGTTTAGAAAAGAGTCAAA+TGG | - | chr3_4:1700665-1700684 | Msa0484380:intron | 25.0% |
| !! | TCCATAGTATAGATCTATTT+TGG | - | chr3_4:1700892-1700911 | Msa0484380:CDS | 25.0% |
| ! | TCCAAAATAGATCTATACTA+TGG | + | chr3_4:1700896-1700915 | None:intergenic | 25.0% |
| ! | GAGATTCATCATAATAAATC+GGG | + | chr3_4:1700938-1700957 | None:intergenic | 25.0% |
| ! | CGAGATTCATCATAATAAAT+CGG | + | chr3_4:1700939-1700958 | None:intergenic | 25.0% |
| ! | TTACTTAAACTTAGTGTAGT+CGG | - | chr3_4:1700977-1700996 | Msa0484380:CDS | 25.0% |
| ! | AGTCTTGAATATTGAATCTA+CGG | - | chr3_4:1701102-1701121 | Msa0484380:CDS | 25.0% |
| !!! | CCCAAGAGATATATTTTTAT+TGG | - | chr3_4:1701144-1701163 | Msa0484380:CDS | 25.0% |
| ! | CATCCAAAATATAACAAACA+TGG | + | chr3_4:1701217-1701236 | None:intergenic | 25.0% |
| ! | AAAAATCTTGCAATAACTAC+TGG | + | chr3_4:1701343-1701362 | None:intergenic | 25.0% |
| ! | AACAAGATATAAAAGTAGTC+TGG | + | chr3_4:1701405-1701424 | None:intergenic | 25.0% |
| !! | TTCTTATACATCATTTTGCA+AGG | - | chr3_4:1701436-1701455 | Msa0484380:CDS | 25.0% |
| ! | TATATGTAATCAACTGTATC+GGG | + | chr3_4:1701674-1701693 | None:intergenic | 25.0% |
| ! | GTATATGTAATCAACTGTAT+CGG | + | chr3_4:1701675-1701694 | None:intergenic | 25.0% |
| !!! | ATAGAGCTTCTGAAATATTA+TGG | - | chr3_4:1701716-1701735 | Msa0484380:CDS | 25.0% |
| !!! | TTTTTTTCTGTCTGATTCAT+AGG | - | chr3_4:1701997-1702016 | Msa0484380:CDS | 25.0% |
| ! | GTAATAATATGCAATCTCTT+CGG | + | chr3_4:1702139-1702158 | None:intergenic | 25.0% |
| !! | GAGACCGATTTTAAAAGAAT+CGG | - | chr3_4:1699389-1699408 | Msa0484380:three_prime_UTR | 30.0% |
| AAACACGCAAAAATGTTTCA+TGG | - | chr3_4:1699544-1699563 | Msa0484380:three_prime_UTR | 30.0% | |
| TGTATTAAAAGAAAGGGGAA+AGG | - | chr3_4:1699768-1699787 | Msa0484380:CDS | 30.0% | |
| ! | AAGGAAAAAAGTTGATCCTA+GGG | + | chr3_4:1700094-1700113 | None:intergenic | 30.0% |
| ! | AAAGGAAAAAAGTTGATCCT+AGG | + | chr3_4:1700095-1700114 | None:intergenic | 30.0% |
| !!! | TCAACTTTTTTCCTTTCCTA+TGG | - | chr3_4:1700099-1700118 | Msa0484380:intron | 30.0% |
| !!! | CAACTTTTTTCCTTTCCTAT+GGG | - | chr3_4:1700100-1700119 | Msa0484380:intron | 30.0% |
| ATGATAGATGCAACTTTCAA+TGG | - | chr3_4:1700125-1700144 | Msa0484380:intron | 30.0% | |
| TACTTCATGCAAGATTTCAA+AGG | - | chr3_4:1700200-1700219 | Msa0484380:intron | 30.0% | |
| !! | TGTTTTTAAGCCAATTGATG+AGG | - | chr3_4:1700238-1700257 | Msa0484380:intron | 30.0% |
| TTATATATTGGATCATCCGA+AGG | - | chr3_4:1700367-1700386 | Msa0484380:intron | 30.0% | |
| CAGAAGTTTATGAGTAATGA+TGG | - | chr3_4:1700536-1700555 | Msa0484380:intron | 30.0% | |
| AGACAATAACCATGATCAAT+TGG | + | chr3_4:1700707-1700726 | None:intergenic | 30.0% | |
| ! | TCTATACTATGGATTGACAT+CGG | + | chr3_4:1700885-1700904 | None:intergenic | 30.0% |
| GATGTCAGTTTAGACTTATA+TGG | - | chr3_4:1701293-1701312 | Msa0484380:CDS | 30.0% | |
| TTGAAGATTGCACATTTGAT+TGG | - | chr3_4:1701615-1701634 | Msa0484380:CDS | 30.0% | |
| AGTTGATTACATATACTCTC+TGG | - | chr3_4:1701679-1701698 | Msa0484380:CDS | 30.0% | |
| !! | AGCTTCTGAAATATTATGGT+TGG | - | chr3_4:1701720-1701739 | Msa0484380:CDS | 30.0% |
| !! | GCTTCTGAAATATTATGGTT+GGG | - | chr3_4:1701721-1701740 | Msa0484380:CDS | 30.0% |
| TCCACAATGTTGTTGAAAAA+AGG | - | chr3_4:1701779-1701798 | Msa0484380:CDS | 30.0% | |
| CCACAATGTTGTTGAAAAAA+GGG | - | chr3_4:1701780-1701799 | Msa0484380:CDS | 30.0% | |
| CACAATGTTGTTGAAAAAAG+GGG | - | chr3_4:1701781-1701800 | Msa0484380:CDS | 30.0% | |
| CTTAAGGTTGTTGTATAAGA+AGG | - | chr3_4:1702076-1702095 | Msa0484380:CDS | 30.0% | |
| CAATCCCGAAAAACAATATA+CGG | + | chr3_4:1702176-1702195 | None:intergenic | 30.0% | |
| AGAATTATCTCGCAACAATG+TGG | - | chr3_4:1699596-1699615 | Msa0484380:CDS | 35.0% | |
| ! | AAAGAGTACGGTGTAACTAA+TGG | - | chr3_4:1699624-1699643 | Msa0484380:CDS | 35.0% |
| AGTTTCAGATTGATAGGCAT+AGG | - | chr3_4:1699724-1699743 | Msa0484380:CDS | 35.0% | |
| !!! | AGGTTTTGTTGATCTTGTTG+AGG | - | chr3_4:1699788-1699807 | Msa0484380:CDS | 35.0% |
| ! | TTTTGTTGATCTTGTTGAGG+AGG | - | chr3_4:1699791-1699810 | Msa0484380:CDS | 35.0% |
| !!! | GAACAAGAGTTTTTTTGCAG+CGG | - | chr3_4:1699813-1699832 | Msa0484380:CDS | 35.0% |
| GAATAATCAGAATCAGGATG+AGG | - | chr3_4:1700007-1700026 | Msa0484380:intron | 35.0% | |
| TCTATCATATCCCATAGGAA+AGG | + | chr3_4:1700113-1700132 | None:intergenic | 35.0% | |
| TTGCATCTATCATATCCCAT+AGG | + | chr3_4:1700118-1700137 | None:intergenic | 35.0% | |
| TAAACCTGTTAGATCTTCTG+AGG | - | chr3_4:1700163-1700182 | Msa0484380:intron | 35.0% | |
| AAACCTGTTAGATCTTCTGA+GGG | - | chr3_4:1700164-1700183 | Msa0484380:intron | 35.0% | |
| AGAAGTTGCGGCTTATATAT+TGG | - | chr3_4:1700355-1700374 | Msa0484380:intron | 35.0% | |
| ! | CTCTTTAAGGATGGATCATA+AGG | - | chr3_4:1700502-1700521 | Msa0484380:intron | 35.0% |
| TTTAAGGATGGATCATAAGG+TGG | - | chr3_4:1700505-1700524 | Msa0484380:intron | 35.0% | |
| TTAAGGATGGATCATAAGGT+GGG | - | chr3_4:1700506-1700525 | Msa0484380:intron | 35.0% | |
| GAGTAATGATGGTAATTGTG+AGG | - | chr3_4:1700547-1700566 | Msa0484380:intron | 35.0% | |
| GATGGTAATTGTGAGGATAT+TGG | - | chr3_4:1700554-1700573 | Msa0484380:intron | 35.0% | |
| CAGTGTGCTTGATATAAGAA+TGG | - | chr3_4:1700613-1700632 | Msa0484380:intron | 35.0% | |
| AAATGGTGACTTACTTTCTC+AGG | + | chr3_4:1700731-1700750 | None:intergenic | 35.0% | |
| AATGACAAAAGATAAGCGAC+TGG | + | chr3_4:1701028-1701047 | None:intergenic | 35.0% | |
| TCAACAACATTGTGGAAATG+CGG | + | chr3_4:1701775-1701794 | None:intergenic | 35.0% | |
| !!! | CCCTTTTTTCAACAACATTG+TGG | + | chr3_4:1701783-1701802 | None:intergenic | 35.0% |
| GAACAAAGAATCAGTGATTG+AGG | - | chr3_4:1701859-1701878 | Msa0484380:CDS | 35.0% | |
| GAAGAAAACCAGTCCATATT+TGG | - | chr3_4:1702048-1702067 | Msa0484380:CDS | 35.0% | |
| AAAACCAGTCCATATTTGGA+TGG | - | chr3_4:1702052-1702071 | Msa0484380:CDS | 35.0% | |
| ! | TCCATATTTGGATGGACTTA+AGG | - | chr3_4:1702060-1702079 | Msa0484380:CDS | 35.0% |
| ACCTTAAGTCCATCCAAATA+TGG | + | chr3_4:1702064-1702083 | None:intergenic | 35.0% | |
| GTTGTTGTATAAGAAGGTGA+TGG | - | chr3_4:1702082-1702101 | Msa0484380:CDS | 35.0% | |
| ! | TATAAGAAGGTGATGGTAAG+AGG | - | chr3_4:1702089-1702108 | Msa0484380:CDS | 35.0% |
| TGTTCTAATCAGGGACATAT+AGG | - | chr3_4:1702112-1702131 | Msa0484380:CDS | 35.0% | |
| AACAATATACGGAGGTGATT+GGG | + | chr3_4:1702165-1702184 | None:intergenic | 35.0% | |
| AAACAATATACGGAGGTGAT+TGG | + | chr3_4:1702166-1702185 | None:intergenic | 35.0% | |
| !! | CACCTCCGTATATTGTTTTT+CGG | - | chr3_4:1702168-1702187 | Msa0484380:CDS | 35.0% |
| !! | ACCTCCGTATATTGTTTTTC+GGG | - | chr3_4:1702169-1702188 | Msa0484380:CDS | 35.0% |
| TACGGTGACGTATATCAGAA+TGG | + | chr3_4:1699457-1699476 | None:intergenic | 40.0% | |
| TCAGATTCTAACACACGCAT+TGG | + | chr3_4:1699495-1699514 | None:intergenic | 40.0% | |
| CGATTGCATCAGTGAAAATG+AGG | - | chr3_4:1699517-1699536 | Msa0484380:three_prime_UTR | 40.0% | |
| GCGAGATAATTCTCTTCCAT+TGG | + | chr3_4:1699589-1699608 | None:intergenic | 40.0% | |
| AATGTGGCGATGAAAGAGTA+CGG | - | chr3_4:1699612-1699631 | Msa0484380:CDS | 40.0% | |
| ATTGTTGTGAGGACAATGTG+TGG | - | chr3_4:1699690-1699709 | Msa0484380:CDS | 40.0% | |
| TTGTTGTGAGGACAATGTGT+GGG | - | chr3_4:1699691-1699710 | Msa0484380:CDS | 40.0% | |
| ATAGGAACGTTGCACATCTT+AGG | - | chr3_4:1699742-1699761 | Msa0484380:CDS | 40.0% | |
| GAATCAGGATGAGGTTGTTA+AGG | - | chr3_4:1700016-1700035 | Msa0484380:intron | 40.0% | |
| AAGGTTATAGAACAACCCTC+TGG | - | chr3_4:1700035-1700054 | Msa0484380:intron | 40.0% | |
| ATCCTAGGGTTCACGAAAAT+CGG | + | chr3_4:1700080-1700099 | None:intergenic | 40.0% | |
| CATGCAAGATTTCAAAGGTG+TGG | - | chr3_4:1700205-1700224 | Msa0484380:intron | 40.0% | |
| AATTGATGAGGAACCAATGG+CGG | - | chr3_4:1700250-1700269 | Msa0484380:intron | 40.0% | |
| ! | GAAGCGTTTAATTACCCTGA+TGG | - | chr3_4:1700467-1700486 | Msa0484380:intron | 40.0% |
| CGTTTAATTACCCTGATGGT+GGG | - | chr3_4:1700471-1700490 | Msa0484380:intron | 40.0% | |
| ! | GTTTAATTACCCTGATGGTG+GGG | - | chr3_4:1700472-1700491 | Msa0484380:intron | 40.0% |
| TAAGGATGGATCATAAGGTG+GGG | - | chr3_4:1700507-1700526 | Msa0484380:intron | 40.0% | |
| AATTGTGAGGATATTGGACC+TGG | - | chr3_4:1700560-1700579 | Msa0484380:intron | 40.0% | |
| TAAGAATGGCGAATGCAGAT+AGG | - | chr3_4:1700627-1700646 | Msa0484380:intron | 40.0% | |
| CTGCTCATTCCAATTGATCA+TGG | - | chr3_4:1700695-1700714 | Msa0484380:intron | 40.0% | |
| ACTGACATCTGCATCTCAAT+TGG | + | chr3_4:1701282-1701301 | None:intergenic | 40.0% | |
| !! | GCACATTTGATTGGCTTTAC+TGG | - | chr3_4:1701624-1701643 | Msa0484380:CDS | 40.0% |
| ATACTCTCTGGATGCTGAAA+AGG | - | chr3_4:1701691-1701710 | Msa0484380:CDS | 40.0% | |
| TTGAAAAAAGGGGTTGAGAG+AGG | - | chr3_4:1701791-1701810 | Msa0484380:CDS | 40.0% | |
| ATGATGCTTCCAATGGCATA+GGG | + | chr3_4:1701824-1701843 | None:intergenic | 40.0% | |
| !! | CATTGGAAGCATCATGTGTA+GGG | - | chr3_4:1701829-1701848 | Msa0484380:CDS | 40.0% |
| CGAATTTGTATCGCAGATCA+TGG | - | chr3_4:1701940-1701959 | Msa0484380:CDS | 40.0% | |
| TCTATTTCGATAGCTCACCA+AGG | + | chr3_4:1701973-1701992 | None:intergenic | 40.0% | |
| AAGTCCATCCAAATATGGAC+TGG | + | chr3_4:1702059-1702078 | None:intergenic | 40.0% | |
| !! | TGGTAAGAGGTGTTCTAATC+AGG | - | chr3_4:1702102-1702121 | Msa0484380:CDS | 40.0% |
| !! | GGTAAGAGGTGTTCTAATCA+GGG | - | chr3_4:1702103-1702122 | Msa0484380:CDS | 40.0% |
| TCCCGAAAAACAATATACGG+AGG | + | chr3_4:1702173-1702192 | None:intergenic | 40.0% | |
| TGGATTCGCTTGAACAACGA+CGG | + | chr3_4:1699437-1699456 | None:intergenic | 45.0% | |
| CTGATATACGTCACCGTAGA+CGG | - | chr3_4:1699459-1699478 | Msa0484380:three_prime_UTR | 45.0% | |
| !! | AACCGATTTTCGTGAACCCT+AGG | - | chr3_4:1700075-1700094 | Msa0484380:intron | 45.0% |
| GTTCCCTCAGAAGATCTAAC+AGG | + | chr3_4:1700170-1700189 | None:intergenic | 45.0% | |
| ! | GTTAGATCTTCTGAGGGAAC+AGG | - | chr3_4:1700170-1700189 | Msa0484380:intron | 45.0% |
| GCCAATTGATGAGGAACCAA+TGG | - | chr3_4:1700247-1700266 | Msa0484380:intron | 45.0% | |
| !! | GCCATTGGTTCCTCATCAAT+TGG | + | chr3_4:1700251-1700270 | None:intergenic | 45.0% |
| ! | TAATAATCCGCGTGGATTGC+CGG | - | chr3_4:1700274-1700293 | Msa0484380:intron | 45.0% |
| AATGGTGAGGGATTGAAGAG+AGG | - | chr3_4:1700305-1700324 | Msa0484380:intron | 45.0% | |
| ATGGTGAGGGATTGAAGAGA+GGG | - | chr3_4:1700306-1700325 | Msa0484380:intron | 45.0% | |
| TTGAAGAGAGGGACAAAGGT+TGG | - | chr3_4:1700317-1700336 | Msa0484380:intron | 45.0% | |
| ATATTGGATCATCCGAAGGC+TGG | - | chr3_4:1700371-1700390 | Msa0484380:intron | 45.0% | |
| GCGTTTAATTACCCTGATGG+TGG | - | chr3_4:1700470-1700489 | Msa0484380:intron | 45.0% | |
| ! | GGATTGTGGCTCTTTAAGGA+TGG | - | chr3_4:1700493-1700512 | Msa0484380:intron | 45.0% |
| ATCTTATGCACCTCTTGCAC+AGG | + | chr3_4:1700593-1700612 | None:intergenic | 45.0% | |
| CTTCAGCAACTTCGTATGCA+TGG | + | chr3_4:1701486-1701505 | None:intergenic | 45.0% | |
| CATGCATACGAAGTTGCTGA+AGG | - | chr3_4:1701484-1701503 | Msa0484380:CDS | 45.0% | |
| TCAACTGTATCGGGAGAGTA+TGG | + | chr3_4:1701665-1701684 | None:intergenic | 45.0% | |
| AGTGTTCTAGCACTCTCAAC+TGG | + | chr3_4:1701752-1701771 | None:intergenic | 45.0% | |
| CATGATGCTTCCAATGGCAT+AGG | + | chr3_4:1701825-1701844 | None:intergenic | 45.0% | |
| CCTACACATGATGCTTCCAA+TGG | + | chr3_4:1701831-1701850 | None:intergenic | 45.0% | |
| !! | CCATTGGAAGCATCATGTGT+AGG | - | chr3_4:1701828-1701847 | Msa0484380:CDS | 45.0% |
| GCCTGGTAGCAATGATTTCT+GGG | + | chr3_4:1701900-1701919 | None:intergenic | 45.0% | |
| TGCCTGGTAGCAATGATTTC+TGG | + | chr3_4:1701901-1701920 | None:intergenic | 45.0% | |
| GAAATCATTGCTACCAGGCA+CGG | - | chr3_4:1701901-1701920 | Msa0484380:CDS | 45.0% | |
| ATTTCGATAGCTCACCAAGG+CGG | + | chr3_4:1701970-1701989 | None:intergenic | 45.0% | |
| TGGTGTAACTGCTCCGTCTA+CGG | + | chr3_4:1699475-1699494 | None:intergenic | 50.0% | |
| TGTGAGGACAATGTGTGGGA+AGG | - | chr3_4:1699695-1699714 | Msa0484380:CDS | 50.0% | |
| ! | AGATCTTCTGAGGGAACAGG+TGG | - | chr3_4:1700173-1700192 | Msa0484380:intron | 50.0% |
| ! | GATCTTCTGAGGGAACAGGT+GGG | - | chr3_4:1700174-1700193 | Msa0484380:intron | 50.0% |
| ! | CGCGGATTATTAACCGCCAT+TGG | + | chr3_4:1700266-1700285 | None:intergenic | 50.0% |
| ATGGCGGTTAATAATCCGCG+TGG | - | chr3_4:1700266-1700285 | Msa0484380:intron | 50.0% | |
| GGGATTGAAGAGAGGGACAA+AGG | - | chr3_4:1700313-1700332 | Msa0484380:intron | 50.0% | |
| AGAGGGACAAAGGTTGGAGA+AGG | - | chr3_4:1700323-1700342 | Msa0484380:intron | 50.0% | |
| AGGAGCTGTGAGAGAAGTTG+CGG | - | chr3_4:1700343-1700362 | Msa0484380:intron | 50.0% | |
| ! | TTGGTGTCTGGTGAAGCGAT+TGG | - | chr3_4:1700401-1700420 | Msa0484380:intron | 50.0% |
| !!! | GGTGAAGCGATTGGTTTTGC+TGG | - | chr3_4:1700410-1700429 | Msa0484380:intron | 50.0% |
| ! | TTTTGCTGGTGTTCCGCCTA+CGG | - | chr3_4:1700424-1700443 | Msa0484380:intron | 50.0% |
| AAACACCGCACCATAACCGT+AGG | + | chr3_4:1700443-1700462 | None:intergenic | 50.0% | |
| GTGGGGATTGTGGCTCTTTA+AGG | - | chr3_4:1700489-1700508 | Msa0484380:intron | 50.0% | |
| !! | TCTTGCACAGGAAAAGCACC+AGG | + | chr3_4:1700581-1700600 | None:intergenic | 50.0% |
| ! | TGGTGCTTTTCCTGTGCAAG+AGG | - | chr3_4:1700580-1700599 | Msa0484380:intron | 50.0% |
| CGAATGCAGATAGGCATGCA+GGG | - | chr3_4:1700636-1700655 | Msa0484380:intron | 50.0% | |
| GCATACGAAGTTGCTGAAGG+TGG | - | chr3_4:1701487-1701506 | Msa0484380:CDS | 50.0% | |
| GCCCAGAAATCATTGCTACC+AGG | - | chr3_4:1701896-1701915 | Msa0484380:CDS | 50.0% | |
| AAATCAGATTCCTCCGTGCC+TGG | + | chr3_4:1701917-1701936 | None:intergenic | 50.0% | |
| TTTCGATAGCTCACCAAGGC+GGG | + | chr3_4:1701969-1701988 | None:intergenic | 50.0% | |
| !! | GGATTGCCGGTTTCGGTGAA+TGG | - | chr3_4:1700287-1700306 | Msa0484380:intron | 55.0% |
| CCCTCACCATTCACCGAAAC+CGG | + | chr3_4:1700296-1700315 | None:intergenic | 55.0% | |
| CCGGTTTCGGTGAATGGTGA+GGG | - | chr3_4:1700293-1700312 | Msa0484380:intron | 55.0% | |
| GCTTCACCAGACACCAAACG+CGG | + | chr3_4:1700398-1700417 | None:intergenic | 55.0% | |
| TGGTGTTCCGCCTACGGTTA+TGG | - | chr3_4:1700430-1700449 | Msa0484380:intron | 55.0% | |
| TTCCGCCTACGGTTATGGTG+CGG | - | chr3_4:1700435-1700454 | Msa0484380:intron | 55.0% | |
| !! | TACCCTGATGGTGGGGATTG+TGG | - | chr3_4:1700479-1700498 | Msa0484380:intron | 55.0% |
| AGCCACAATCCCCACCATCA+GGG | + | chr3_4:1700484-1700503 | None:intergenic | 55.0% | |
| GCGAATGCAGATAGGCATGC+AGG | - | chr3_4:1700635-1700654 | Msa0484380:intron | 55.0% | |
| GAGTATGGCTGACGTGCTTG+AGG | + | chr3_4:1701650-1701669 | None:intergenic | 55.0% | |
| GGTCTCACTCCCTATGCCAT+TGG | - | chr3_4:1701812-1701831 | Msa0484380:CDS | 55.0% | |
| ATCATTGCTACCAGGCACGG+AGG | - | chr3_4:1701904-1701923 | Msa0484380:CDS | 55.0% | |
| CAGATCATGGATTCCCGCCT+TGG | - | chr3_4:1701953-1701972 | Msa0484380:CDS | 55.0% | |
| !! | TCCGCGTGGATTGCCGGTTT+CGG | - | chr3_4:1700280-1700299 | Msa0484380:intron | 60.0% |
| ACCGAAACCGGCAATCCACG+CGG | + | chr3_4:1700284-1700303 | None:intergenic | 60.0% | |
| ! | GCCGGTTTCGGTGAATGGTG+AGG | - | chr3_4:1700292-1700311 | Msa0484380:intron | 60.0% |
| ACCAAACGCGGTCCAGCCTT+CGG | + | chr3_4:1700386-1700405 | None:intergenic | 60.0% | |
| CACCGCACCATAACCGTAGG+CGG | + | chr3_4:1700440-1700459 | None:intergenic | 60.0% | |
| GAGCCACAATCCCCACCATC+AGG | + | chr3_4:1700485-1700504 | None:intergenic | 60.0% | |
| TCCGAAGGCTGGACCGCGTT+TGG | - | chr3_4:1700382-1700401 | Msa0484380:intron | 65.0% | |
| !! | GCTGGACCGCGTTTGGTGTC+TGG | - | chr3_4:1700389-1700408 | Msa0484380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 1699366 | 1702216 | 1699366 | ID=Msa0484380;Name=Msa0484380 |
| chr3_4 | mRNA | 1699366 | 1702216 | 1699366 | ID=Msa0484380-mRNA-1;Parent=Msa0484380;Name=Msa0484380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.5|1|1|1|2|225|582 |
| chr3_4 | exon | 1699366 | 1699968 | 1699366 | ID=Msa0484380-mRNA-1:exon:534;Parent=Msa0484380-mRNA-1 |
| chr3_4 | exon | 1700846 | 1702216 | 1700846 | ID=Msa0484380-mRNA-1:exon:533;Parent=Msa0484380-mRNA-1 |
| chr3_4 | CDS | 1700846 | 1702216 | 1700846 | ID=Msa0484380-mRNA-1:cds;Parent=Msa0484380-mRNA-1 |
| chr3_4 | CDS | 1699591 | 1699968 | 1699591 | ID=Msa0484380-mRNA-1:cds;Parent=Msa0484380-mRNA-1 |
| chr3_4 | three_prime_UTR | 1699366 | 1699590 | 1699366 | ID=Msa0484380-mRNA-1:three_prime_utr;Parent=Msa0484380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
