AlfalfaGEDB | Msa0467680

M. sativa cultivar zhongmu-4 / Msa0467680

KEGG: K00809
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009553 GO:0009987 GO:0010467 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019538 GO:0032501 GO:0032502 GO:0034038 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0051604 GO:0071704 GO:1901564
PFAM: PF01916.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467680	XP_039684891.1	86.650	412	8	2	1	412	1	365	0.0	700

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467680	sp\|Q9FI94\|DHYS_ARATH	75.000	404	54	2	8	410	2	359	0.0	632

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467680	A0A1S2YHD3	78.313	415	42	2	1	415	1	367	0.0	666

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0467680	0.812066	5.110698e-51	-8.615850e-47
Msa0036140	Msa0467680	0.801428	9.047718e-49	-8.615850e-47
Msa0140780	Msa0467680	0.820464	6.765089e-53	-8.615850e-47
Msa0157290	Msa0467680	0.811103	8.274538e-51	-8.615850e-47
Msa0188830	Msa0467680	0.810903	9.146381e-51	-8.615850e-47
Msa0195000	Msa0467680	0.800532	1.378866e-48	-8.615850e-47
Msa0200260	Msa0467680	0.828052	1.113869e-54	-8.615850e-47
Msa0243100	Msa0467680	0.844528	7.149745e-59	-8.615850e-47
Msa0287650	Msa0467680	0.836723	7.915297e-57	-8.615850e-47
Msa0373160	Msa0467680	0.950127	3.126095e-108	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467680	MtrunA17_Chr8g0376541	86.650	412	8	2	1	412	1	365	0.0	700

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467680	AT5G05920.1	75.000	404	54	2	8	410	2	359	0.0	632
Msa0467680	AT5G05920.2	76.241	282	21	1	129	410	6	241	7.51e-158	445
Msa0467680	AT5G05920.3	71.889	217	15	1	194	410	1	171	2.06e-108	317

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Find 128 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTGGCACTCACTG+TGG	0.643884	3_3:+69102583	None:intergenic
AAAGAATCTGAAAACCTCGC+AGG	0.559309	3_3:-69106649	Msa0467680:CDS
AAAGGAGATTTCTCTTTGCC+TGG	0.415853	3_3:-69105364	Msa0467680:CDS
AAATCTCTCAAACCTTCTTC+TGG	0.314444	3_3:-69106949	Msa0467680:five_prime_UTR
AACGATAGCATTCCCTCTGC+TGG	0.497507	3_3:-69102702	Msa0467680:CDS
AACGCCAATATGATGCGCAA+TGG	0.648917	3_3:-69102961	Msa0467680:CDS
AAGTTCCATACCAAAACATT+TGG	0.422024	3_3:+69102571	None:intergenic
AATACTGCACAAGAATTTGA+TGG	0.361085	3_3:-69102916	Msa0467680:CDS
AATATTCCAGTTTATTGTCC+AGG	0.444941	3_3:-69103248	Msa0467680:CDS
AATCGAGCTATTAACTTGGA+TGG	0.538542	3_3:+69103556	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTAATAAGAAGAATGAAGG+AGG	+	chr3_3:69102320-69102339	None:intergenic	30.0%
CGTTAAAGTCGTTAATCAAA+TGG	-	chr3_3:69102706-69102725	Msa0467680:CDS	30.0%
TGATGAAGATAAGAAGGATT+TGG	-	chr3_3:69102863-69102882	Msa0467680:CDS	30.0%
ACTTCTAATCTTATCTCTTC+TGG	-	chr3_3:69102927-69102946	Msa0467680:CDS	30.0%
TTCCATATTCAATAAGAACC+AGG	+	chr3_3:69103040-69103059	None:intergenic	30.0%
TTTATGCAATATCAAGTCAG+GGG	-	chr3_3:69103131-69103150	Msa0467680:intron	30.0%
TCATCACTACAAAAATCAGT+GGG	+	chr3_3:69103412-69103431	None:intergenic	30.0%
TTCATCACTACAAAAATCAG+TGG	+	chr3_3:69103413-69103432	None:intergenic	30.0%
TACGCCAAGTATAGTATATT+AGG	-	chr3_3:69103568-69103587	Msa0467680:CDS	30.0%
CTAGATATATTTGAAGATCC+TGG	-	chr3_3:69103642-69103661	Msa0467680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	69102178	69107068	69102178	ID=Msa0467680;Name=Msa0467680
chr3_3	mRNA	69102178	69107068	69102178	ID=Msa0467680-mRNA-1;Parent=Msa0467680;Name=Msa0467680-mRNA-1;_AED=0.23;_eAED=0.23;_QI=334\|0.83\|0.85\|1\|1\|1\|7\|483\|415
chr3_3	exon	69102178	69102738	69102178	ID=Msa0467680-mRNA-1:exon:16287;Parent=Msa0467680-mRNA-1
chr3_3	exon	69102843	69103078	69102843	ID=Msa0467680-mRNA-1:exon:16286;Parent=Msa0467680-mRNA-1
chr3_3	exon	69103168	69103273	69103168	ID=Msa0467680-mRNA-1:exon:16285;Parent=Msa0467680-mRNA-1
chr3_3	exon	69103369	69103593	69103369	ID=Msa0467680-mRNA-1:exon:16284;Parent=Msa0467680-mRNA-1
chr3_3	exon	69105237	69105455	69105237	ID=Msa0467680-mRNA-1:exon:16283;Parent=Msa0467680-mRNA-1
chr3_3	exon	69106257	69106424	69106257	ID=Msa0467680-mRNA-1:exon:16282;Parent=Msa0467680-mRNA-1
chr3_3	exon	69106519	69107068	69106519	ID=Msa0467680-mRNA-1:exon:16281;Parent=Msa0467680-mRNA-1
chr3_3	five_prime_UTR	69106735	69107068	69106735	ID=Msa0467680-mRNA-1:five_prime_utr;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69106519	69106734	69106519	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69106257	69106424	69106257	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69105237	69105455	69105237	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69103369	69103593	69103369	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69103168	69103273	69103168	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69102843	69103078	69102843	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	CDS	69102661	69102738	69102661	ID=Msa0467680-mRNA-1:cds;Parent=Msa0467680-mRNA-1
chr3_3	three_prime_UTR	69102178	69102660	69102178	ID=Msa0467680-mRNA-1:three_prime_utr;Parent=Msa0467680-mRNA-1

Gene Sequence

>Msa0467680

ATGAGTGAAACAAAGCAGCAAGAAGATGATACAGTTATGTCCTCAGTTCACTCCACAGTCTTCAAAGAATCTGAAAACCTCGCAGGAAAGTGTCTCCAAATCGAGGGTTATGATTTCAACCGTGGCGTCGATTATCAACAGCTTCTCAAATCAATGCTCACAACTGGTTTTCAAGCTTCCAACTTTGGTGATGCCGTTAAAGTCGTTAATCAAATGCTAGATTGGAGGTTGGTTGATGAACCTATTGATGAGGATTGTGATGAAGATAAGAAGGATTTGGTGTATAGGAAATCTGTTACATGTAAAGTGTTTTTGGGTTTCACTTCTAATCTTATCTCTTCTGGTGTTAGAGATGTTGTTCGTTACCTTTGTCAGCATCACATGGTTCATGTAGTTGTTACAACTACAGGTGGCATTGAAGAAGATCTTATAAAGTGCCTTGCGCCAACATATAAAGGAGATTTCTCTTTGCCTGGAGCTTATCTTCGCTCAAAAGGATTGAATCGAATCGGTAATTTATTGGTCCCTAATGACAACTATTGCAAATTTGAGGACTGGATTATTCCTATTTTTAATCAAATGTTGAAGGAGCAAAAGGAAGAGAATGTGTTGTGGACACCATCCAAGTTAATAGCTCGATTGGGAAAAGAAATCAACAATGAAAACTCCTACCTTTACTGGGCATACAAGGCAAGACTGATATCTAGTTTAGATTTTCAGCAATATATTATTCTCTACTTCATTTCTGATTCAAATCTTTACACTAGTTTCTTTTTCCATCGTTATGCTGTTAATTTCGTAGATATCCTGCATACAGAATGCAACATGAACAATATTCCAGTTTATTGTCCAGGATTAACTGATGGCTCATTGGGTGACATGCTGTACTTCCATTCCTTCCAAAACCCTGGTCTGATTGTGGACATAGTGCAAGATATAAGGGCCATGAATGGTGAAGCTGTACATGCAAGTCCTAGCAAGACAGGCATGATTATTTTAGGAGGCGGCCTTCCAAAACATCACATTTGCAACGCCAATATGATGCGCAATGGTGCAGACTATGCGGTTTTTATTAATACTGCACAAGAATTTGATGGAAGTGATTCTGGAGCTCGTCCAGATGAGGCTGTTTCATGGGGGAAAATACGAGGATCTGCTAAAACTGTTAAGGTACATTGTGATGCAACGATAGCATTCCCTCTGCTGGTTGCTGAAACATTTGCCTCAAGAACGAAACTTCTTCATTGA

Protein sequence

>Msa0467680

MSETKQQEDDTVMSSVHSTVFKESENLAGKCLQIEGYDFNRGVDYQQLLKSMLTTGFQASNFGDAVKVVNQMLDWRLVDEPIDEDCDEDKKDLVYRKSVTCKVFLGFTSNLISSGVRDVVRYLCQHHMVHVVVTTTGGIEEDLIKCLAPTYKGDFSLPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFNQMLKEQKEENVLWTPSKLIARLGKEINNENSYLYWAYKARLISSLDFQQYIILYFISDSNLYTSFFFHRYAVNFVDILHTECNMNNIPVYCPGLTDGSLGDMLYFHSFQNPGLIVDIVQDIRAMNGEAVHASPSKTGMIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRTKLLH*