AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514030 MtrunA17_Chr8g0376541 86.650 412 8 2 1 412 1 365 0.0 700
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514030 AT5G05920.1 75.000 404 54 2 8 410 2 359 0.0 632
Msa0514030 AT5G05920.2 76.241 282 21 1 129 410 6 241 7.51e-158 445
Msa0514030 AT5G05920.3 71.889 217 15 1 194 410 1 171 2.06e-108 317

Find 128 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTGAGAGTCATGAATTT+TGG 0.197013 3_4:+64685683 Msa0514030:three_prime_UTR
GAATTTGATGGAAGTGATTC+TGG 0.236275 3_4:+64685151 Msa0514030:CDS
GAATCGAATCGGTAATTTAT+TGG 0.240496 3_4:+64682702 Msa0514030:CDS
CGAAACTTCTTCATTGATAA+AGG 0.252532 3_4:+64685400 Msa0514030:exon
CCACAATCAGACCAGGGTTT+TGG 0.262442 3_4:-64684875 None:intergenic
TTGGCAATACAACAGATATA+AGG 0.272646 3_4:+64684984 Msa0514030:intron
ATGAAAACTCCTACCTTTAC+TGG 0.273857 3_4:+64684539 Msa0514030:CDS
ACTTCTAATCTTATCTCTTC+TGG 0.277640 3_4:+64681722 Msa0514030:CDS
AATTTGCAATAGTTGTCATT+AGG 0.299937 3_4:-64682727 None:intergenic
AAATCTCTCAAACCTTCTTC+TGG 0.314444 3_4:+64681070 Msa0514030:five_prime_UTR
ATGTACAGCTTCACCATTCA+TGG 0.318700 3_4:-64685008 None:intergenic
ATTTGCAATAGTTGTCATTA+GGG 0.327811 3_4:-64682726 None:intergenic
GAGATGACTGTGCAAGGAAT+TGG 0.329274 3_4:-64681031 None:intergenic
CATTTGATTAACGACTTTAA+CGG 0.349642 3_4:-64681500 None:intergenic
GTTAATCCTGGACAATAAAC+TGG 0.352135 3_4:-64684813 None:intergenic
TCATGACTCTCAATTCCTTC+AGG 0.357834 3_4:-64685676 None:intergenic
TGAAATCATAACCCTCGATT+TGG 0.358260 3_4:-64681402 None:intergenic
TGCCTTGCGCCAACATATAA+AGG 0.358724 3_4:+64682637 Msa0514030:CDS
AATACTGCACAAGAATTTGA+TGG 0.361085 3_4:+64685139 Msa0514030:CDS
GGTTTGCTGTCAAAAGTAAA+AGG 0.384187 3_4:+64685421 Msa0514030:three_prime_UTR
ATGCAGTGTGTTTGAGATCT+TGG 0.389710 3_4:+64685557 Msa0514030:three_prime_UTR
TGCACCATTGCGCATCATAT+TGG 0.397312 3_4:-64685098 None:intergenic
ATTAAATGTCAATGGCAAAC+TGG 0.398783 3_4:-64685584 None:intergenic
CCCCATGAAACAGCCTCATC+TGG 0.399289 3_4:-64685181 None:intergenic
AGGATTAACTGATGGCTCAT+TGG 0.401238 3_4:+64684827 Msa0514030:CDS
GTCCAGATGAGGCTGTTTCA+TGG 0.409575 3_4:+64685179 Msa0514030:CDS
CTCAAATCAATGCTCACAAC+TGG 0.413436 3_4:+64681451 Msa0514030:CDS
AAAGGAGATTTCTCTTTGCC+TGG 0.415853 3_4:+64682655 Msa0514030:CDS
TGACAACTATTGCAAATTTG+AGG 0.416421 3_4:+64682732 Msa0514030:CDS
TGGCAATACAACAGATATAA+GGG 0.421254 3_4:+64684985 Msa0514030:intron
AAGTTCCATACCAAAACATT+TGG 0.422024 3_4:-64685484 None:intergenic
TCATCACAATCCTCATCAAT+AGG 0.426415 3_4:-64681641 None:intergenic
GCGTTGCAAATGTGATGTTT+TGG 0.427804 3_4:-64685076 None:intergenic
CTTCTTATTAACAAACGGTC+TGG 0.432451 3_4:+64681123 Msa0514030:five_prime_UTR
GGATTAACTGATGGCTCATT+GGG 0.432714 3_4:+64684828 Msa0514030:CDS
ACAGTGAGTGCCAAATGTTT+TGG 0.432869 3_4:+64685474 Msa0514030:three_prime_UTR
CGTTAAAGTCGTTAATCAAA+TGG 0.440345 3_4:+64681501 Msa0514030:CDS
ATAAGAAGGATTTGGTGTAT+AGG 0.440396 3_4:+64681666 Msa0514030:CDS
AATATTCCAGTTTATTGTCC+AGG 0.444941 3_4:+64684807 Msa0514030:CDS
TCCAGATGAGGCTGTTTCAT+GGG 0.445073 3_4:+64685180 Msa0514030:CDS
CATGTAGTTGTTACAACTAC+AGG 0.448520 3_4:+64682589 Msa0514030:CDS
AGGATCTGCTAAAACTGTTA+AGG 0.452905 3_4:+64685213 Msa0514030:CDS
ATCCAAGTTAATAGCTCGAT+TGG 0.455505 3_4:+64684501 Msa0514030:CDS
TGATGAAGATAAGAAGGATT+TGG 0.455823 3_4:+64681658 Msa0514030:CDS
GGGTTGCGTTGAAGCTAGAT+TGG 0.456974 3_4:+64681603 Msa0514030:intron
CTACCTTTACTGGGCATACA+AGG 0.457425 3_4:+64684549 Msa0514030:CDS
TCAAAAGTAAAAGGTGTGGC+TGG 0.460091 3_4:+64685430 Msa0514030:three_prime_UTR
TCATTCTTCTTATTAACAAA+CGG 0.461967 3_4:+64681118 Msa0514030:five_prime_UTR
TCAAATGTTGAAGGAGCAAA+AGG 0.465723 3_4:+64682777 Msa0514030:CDS
TGGCGATTTGCTCCAGAAGA+AGG 0.466905 3_4:-64681082 None:intergenic
TTTAACGGCATCACCAAAGT+TGG 0.472768 3_4:-64681485 None:intergenic
TTTGTTAATAAGAAGAATGA+AGG 0.474332 3_4:-64681115 None:intergenic
GGAGCTTATCTTCGCTCAAA+AGG 0.483770 3_4:+64682676 Msa0514030:CDS
TCCCAATCGAGCTATTAACT+TGG 0.489104 3_4:-64684503 None:intergenic
GAGAAATCTCCTTTATATGT+TGG 0.490219 3_4:-64682646 None:intergenic
ACAGTCAAATTAAATGTCAA+TGG 0.492199 3_4:-64685592 None:intergenic
ACTATTGCAAATTTGAGGAC+TGG 0.495960 3_4:+64682737 Msa0514030:CDS
AACGATAGCATTCCCTCTGC+TGG 0.497507 3_4:+64685353 Msa0514030:CDS
GAATCGGTGCAACTTGGATC+CGG 0.497715 3_4:-64681146 None:intergenic
CGGTTCGAATCGGTGCAACT+TGG 0.499771 3_4:-64681152 None:intergenic
GAAACAAAAGCGGTTCAAAC+CGG 0.504014 3_4:-64681191 None:intergenic
ATAATCATGCCTGTCTTGCT+AGG 0.505038 3_4:-64685037 None:intergenic
GGCACAAAAGCGGTTCGAAT+CGG 0.509287 3_4:-64681162 None:intergenic
GTTGAAGGAGCAAAAGGAAG+AGG 0.511154 3_4:+64682783 Msa0514030:CDS
ATGAAGAAGTTTCGTTCTTG+AGG 0.511791 3_4:-64685391 None:intergenic
CATGCAAGTCCTAGCAAGAC+AGG 0.515398 3_4:+64685028 Msa0514030:CDS
AGCGGTTCAAACCGGAATGA+TGG 0.516003 3_4:-64681183 None:intergenic
TTATTAACAAACGGTCTGGC+CGG 0.517890 3_4:+64681127 Msa0514030:five_prime_UTR
TCCAAGTTAATAGCTCGATT+GGG 0.518058 3_4:+64684502 Msa0514030:CDS
CCATGTTGCATTCTGTATGC+AGG 0.521582 3_4:-64684687 None:intergenic
CCAAAACCCTGGTCTGATTG+TGG 0.527845 3_4:+64684875 Msa0514030:CDS
TGACTGTCTTGTTATTTGCA+AGG 0.529767 3_4:+64685608 Msa0514030:three_prime_UTR
TCAAAAGGATTGAATCGAAT+CGG 0.532537 3_4:+64682691 Msa0514030:CDS
AATCGAGCTATTAACTTGGA+TGG 0.538542 3_4:-64684499 None:intergenic
GTTAATAAGAAGAATGAAGG+AGG 0.539699 3_4:-64681112 None:intergenic
AATGAGCCATCAGTTAATCC+TGG 0.542845 3_4:-64684825 None:intergenic
AGAATGAAGGAGGTAGTGAA+TGG 0.544372 3_4:-64681102 None:intergenic
TTCCATTCCTTCCAAAACCC+TGG 0.545098 3_4:+64684864 Msa0514030:CDS
CTCCTTTATATGTTGGCGCA+AGG 0.549124 3_4:-64682639 None:intergenic
GGATTGTGATGAAGATAAGA+AGG 0.551599 3_4:+64681652 Msa0514030:CDS
TGTGAAATACAGCAATCAGT+TGG 0.556444 3_4:-64685853 None:intergenic
TATTGTCCAGGATTAACTGA+TGG 0.556513 3_4:+64684819 Msa0514030:CDS
TTGCCTTGTATGCCCAGTAA+AGG 0.557308 3_4:-64684552 None:intergenic
AAAGAATCTGAAAACCTCGC+AGG 0.559309 3_4:+64681370 Msa0514030:CDS
TTTGAGCGAAGATAAGCTCC+AGG 0.562914 3_4:-64682673 None:intergenic
TTGCGTTGAAGCTAGATTGG+AGG 0.571247 3_4:+64681606 Msa0514030:intron
TTCAGATTCTTTGAAGACTG+TGG 0.575222 3_4:-64681359 None:intergenic
CCAGATGAGGCTGTTTCATG+GGG 0.576966 3_4:+64685181 Msa0514030:CDS
ACAGATATAAGGGCCATGAA+TGG 0.581048 3_4:+64684995 Msa0514030:intron
CTTGTATGCCCAGTAAAGGT+AGG 0.581698 3_4:-64684548 None:intergenic
TGAAAACTCCTACCTTTACT+GGG 0.585821 3_4:+64684540 Msa0514030:CDS
TTCTGGAGCTCGTCCAGATG+AGG 0.586670 3_4:+64685168 Msa0514030:CDS
CAGTGTGTTTGAGATCTTGG+TGG 0.588371 3_4:+64685560 Msa0514030:three_prime_UTR
CGAAATTAACAGCATAACGA+TGG 0.590760 3_4:-64684657 None:intergenic
CAAAAGTAAAAGGTGTGGCT+GGG 0.590827 3_4:+64685431 Msa0514030:three_prime_UTR
GTATGACATACAGCCGACCT+TGG 0.591390 3_4:-64685512 None:intergenic
ACTGTGCAAGGAATTGGAGA+AGG 0.595975 3_4:-64681025 None:intergenic
TTACCTTTGTCAGCATCACA+TGG 0.601287 3_4:+64681763 Msa0514030:CDS
AATGTTTCAGCAACCAGCAG+AGG 0.610798 3_4:-64685366 None:intergenic
ACTGATTGCTGTATTTCACA+TGG 0.611719 3_4:+64685856 Msa0514030:three_prime_UTR
GGTATGGAACTTAAAGACCA+AGG 0.619116 3_4:+64685495 Msa0514030:three_prime_UTR
TGGCACTCACTGTGGAGCTG+CGG 0.620478 3_4:-64685464 None:intergenic
AGGAAAGTGTCTCCAAATCG+AGG 0.620843 3_4:+64681390 Msa0514030:CDS
GGTTGATGAACCTATTGATG+AGG 0.625189 3_4:+64681631 Msa0514030:CDS
TGGAACTTAAAGACCAAGGT+CGG 0.627119 3_4:+64685499 Msa0514030:three_prime_UTR
ACTATGTCCACAATCAGACC+AGG 0.627546 3_4:-64684882 None:intergenic
ATGTTTCAGCAACCAGCAGA+GGG 0.629527 3_4:-64685365 None:intergenic
CTGTGCAAGGAATTGGAGAA+GGG 0.629661 3_4:-64681024 None:intergenic
GTTGAAGCTAGATTGGAGGT+TGG 0.633831 3_4:+64681610 Msa0514030:intron
GGAAAGTGTCTCCAAATCGA+GGG 0.640745 3_4:+64681391 Msa0514030:CDS
CTGATTGCTGTATTTCACAT+GGG 0.642069 3_4:+64685857 Msa0514030:three_prime_UTR
AAAACATTTGGCACTCACTG+TGG 0.643884 3_4:-64685472 None:intergenic
GAGGGTTATGATTTCAACCG+TGG 0.648518 3_4:+64681409 Msa0514030:CDS
AACGCCAATATGATGCGCAA+TGG 0.648917 3_4:+64685094 Msa0514030:CDS
CCTGCATACAGAATGCAACA+TGG 0.652599 3_4:+64684687 Msa0514030:CDS
CCGGAATGATGGCACAAAAG+CGG 0.655753 3_4:-64681172 None:intergenic
GCTGTTGATAATCGACGCCA+CGG 0.656868 3_4:-64681426 None:intergenic
TCCACGGGTTGAAACAAAAG+CGG 0.661658 3_4:-64681201 None:intergenic
TTTGGAGACACTTTCCTGCG+AGG 0.661904 3_4:-64681384 None:intergenic
CTGATTGTGGACATAGTGCA+AGG 0.662154 3_4:+64684888 Msa0514030:CDS
TCACCATGTGATGCTGACAA+AGG 0.672957 3_4:-64681766 None:intergenic
GAAGACTGTGGAGTGAACTG+AGG 0.694757 3_4:-64681347 None:intergenic
CAAAACTAAGAGAAACCACA+CGG 0.700672 3_4:-64685742 None:intergenic
GTAGTTGTTACAACTACAGG+TGG 0.721014 3_4:+64682592 Msa0514030:CDS
GCTGTCAAAAGTAAAAGGTG+TGG 0.727672 3_4:+64685426 Msa0514030:three_prime_UTR
CTATGTCCACAATCAGACCA+GGG 0.729813 3_4:-64684881 None:intergenic
GCGCAATGGTGCAGACTATG+CGG 0.731569 3_4:+64685108 Msa0514030:CDS
CAGATGAGGCTGTTTCATGG+GGG 0.740121 3_4:+64685182 Msa0514030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTAATTTTTGTAATGA+AGG - chr3_4:64682828-64682847 None:intergenic 10.0%
!! ATTTATATAAACAACTAAAT+CGG - chr3_4:64683409-64683428 None:intergenic 10.0%
!! TTAGTTGTTTATATAAATAT+TGG + chr3_4:64683411-64683430 Msa0514030:intron 10.0%
!! TCTAATTCTAATTAAAAAAA+AGG - chr3_4:64684061-64684080 None:intergenic 10.0%
!! AATCATATAACTAAAATAAT+TGG + chr3_4:64684965-64684984 Msa0514030:intron 10.0%
!! ATATATAAAAACAAAGAGAT+GGG - chr3_4:64681533-64681552 None:intergenic 15.0%
!! AATATATAAAAACAAAGAGA+TGG - chr3_4:64681534-64681553 None:intergenic 15.0%
!! TTCAACATTTGATTAAAAAT+AGG - chr3_4:64682769-64682788 None:intergenic 15.0%
!!! TATTTTTAATCAAATGTTGA+AGG + chr3_4:64682768-64682787 Msa0514030:CDS 15.0%
!!! ACAATAAATCAAAACTTTTA+TGG - chr3_4:64683113-64683132 None:intergenic 15.0%
!! TGTTTATATAAATATTGGTA+TGG + chr3_4:64683416-64683435 Msa0514030:intron 15.0%
!!! TTCTTCATTTCTTTTTTAAA+AGG - chr3_4:64684002-64684021 None:intergenic 15.0%
!! ATATATTGTTTAATTACTAC+CGG + chr3_4:64684226-64684245 Msa0514030:intron 15.0%
!! AAAAAAAAAAACTTCATATG+AGG - chr3_4:64684409-64684428 None:intergenic 15.0%
!!! TAAAAAAGACATAGTTTTAA+GGG - chr3_4:64685305-64685324 None:intergenic 15.0%
!!! ATAAAAAAGACATAGTTTTA+AGG - chr3_4:64685306-64685325 None:intergenic 15.0%
!! ACTAAAAAATTACTTCTAAA+TGG - chr3_4:64685656-64685675 None:intergenic 15.0%
!! TTTGTTAATAAGAAGAATGA+AGG - chr3_4:64681118-64681137 None:intergenic 20.0%
!! TCATTCTTCTTATTAACAAA+CGG + chr3_4:64681118-64681137 Msa0514030:five_prime_UTR 20.0%
!!! TTTTTTTCTTTGTGTCTTTT+TGG + chr3_4:64681575-64681594 Msa0514030:intron 20.0%
!! TATTAGAAGATAATCTCAAA+TGG + chr3_4:64681867-64681886 Msa0514030:intron 20.0%
!! ATTAGAAGATAATCTCAAAT+GGG + chr3_4:64681868-64681887 Msa0514030:intron 20.0%
!!! TATACATGTATAAAGGTATA+TGG + chr3_4:64682313-64682332 Msa0514030:intron 20.0%
!!! ATACATGTATAAAGGTATAT+GGG + chr3_4:64682314-64682333 Msa0514030:intron 20.0%
!! TAGTAAAAGGAAATTGTAAT+AGG - chr3_4:64682420-64682439 None:intergenic 20.0%
!! CTTCAAATATATCTAGTAAA+AGG - chr3_4:64682433-64682452 None:intergenic 20.0%
!!! ATATGATTAAGTTTTTGTGA+AGG + chr3_4:64682845-64682864 Msa0514030:intron 20.0%
!! ACCTTGAAAATCTTAATTTA+TGG + chr3_4:64683024-64683043 Msa0514030:intron 20.0%
!!! ACCATAAATTAAGATTTTCA+AGG - chr3_4:64683028-64683047 None:intergenic 20.0%
!! AATTATGAACAAATGACTTA+TGG + chr3_4:64683235-64683254 Msa0514030:intron 20.0%
!! GCAAAATTATTATTGAAATC+TGG - chr3_4:64683975-64683994 None:intergenic 20.0%
!!! TGTAACATTTGTATTTTGTT+TGG + chr3_4:64684140-64684159 Msa0514030:intron 20.0%
!! AAACCAAGGTTAATTAAAAT+TGG - chr3_4:64684312-64684331 None:intergenic 20.0%
!!! TAATACCATTGATGTTTTTT+TGG + chr3_4:64684771-64684790 Msa0514030:intron 20.0%
! CATTTGATTAACGACTTTAA+CGG - chr3_4:64681503-64681522 None:intergenic 25.0%
!!! TGTTACATGTAAAGTGTTTT+TGG + chr3_4:64681694-64681713 Msa0514030:CDS 25.0%
!!! GTTACATGTAAAGTGTTTTT+GGG + chr3_4:64681695-64681714 Msa0514030:CDS 25.0%
! TTAGAAGATAATCTCAAATG+GGG + chr3_4:64681869-64681888 Msa0514030:intron 25.0%
! AATTTATGCAATATCAAGTC+AGG + chr3_4:64681924-64681943 Msa0514030:intron 25.0%
! ATTTATGCAATATCAAGTCA+GGG + chr3_4:64681925-64681944 Msa0514030:intron 25.0%
!! TTTCAACTTTTTGCACATTA+AGG - chr3_4:64681977-64681996 None:intergenic 25.0%
! AGCAACATATAAGAAATTCA+AGG - chr3_4:64682134-64682153 None:intergenic 25.0%
! GGTAGTATATACATGTATAA+AGG + chr3_4:64682306-64682325 Msa0514030:intron 25.0%
! TTGACCTAATATACTATACT+TGG - chr3_4:64682370-64682389 None:intergenic 25.0%
! ATTTGCAATAGTTGTCATTA+GGG - chr3_4:64682729-64682748 None:intergenic 25.0%
! AATTTGCAATAGTTGTCATT+AGG - chr3_4:64682730-64682749 None:intergenic 25.0%
!!! ATTTTCAAGGTGATGATAAA+AGG - chr3_4:64683015-64683034 None:intergenic 25.0%
!! TTCTCTCTTTTAAACAATGT+TGG + chr3_4:64683150-64683169 Msa0514030:intron 25.0%
! AGTATCCACATAATAATAGT+TGG + chr3_4:64683289-64683308 Msa0514030:intron 25.0%
! GTATCCACATAATAATAGTT+GGG + chr3_4:64683290-64683309 Msa0514030:intron 25.0%
!! ATGTTTTGTGTGTTAATAGT+AGG + chr3_4:64683568-64683587 Msa0514030:intron 25.0%
! TATACATTATGTTCTTGTTG+AGG + chr3_4:64683807-64683826 Msa0514030:intron 25.0%
! AAGGTTAATTAAAATTGGAC+TGG - chr3_4:64684307-64684326 None:intergenic 25.0%
!!! AGTCCAATTTTAATTAACCT+TGG + chr3_4:64684306-64684325 Msa0514030:intron 25.0%
! AAACACCAAAAAAACATCAA+TGG - chr3_4:64684779-64684798 None:intergenic 25.0%
!! ATGGATGATTTTGAATCAAT+TGG + chr3_4:64684942-64684961 Msa0514030:intron 25.0%
! TTCTGTAAAGAAAACAAGTA+GGG - chr3_4:64685256-64685275 None:intergenic 25.0%
! ATTCTGTAAAGAAAACAAGT+AGG - chr3_4:64685257-64685276 None:intergenic 25.0%
!!! CTTTTTTATTTCACTAAACC+AGG + chr3_4:64685317-64685336 Msa0514030:intron 25.0%
! ACAGTCAAATTAAATGTCAA+TGG - chr3_4:64685595-64685614 None:intergenic 25.0%
!!! AAGTAATTTTTTAGTCCTGA+AGG + chr3_4:64685661-64685680 Msa0514030:three_prime_UTR 25.0%
GTTAATAAGAAGAATGAAGG+AGG - chr3_4:64681115-64681134 None:intergenic 30.0%
!!! GTTTTTGTTTTGAGTCATTG+AGG + chr3_4:64681224-64681243 Msa0514030:five_prime_UTR 30.0%
CGTTAAAGTCGTTAATCAAA+TGG + chr3_4:64681501-64681520 Msa0514030:CDS 30.0%
!!! TTTGTGTCTTTTTGGAACAT+GGG + chr3_4:64681583-64681602 Msa0514030:intron 30.0%
TGATGAAGATAAGAAGGATT+TGG + chr3_4:64681658-64681677 Msa0514030:CDS 30.0%
!! ATAAGAAGGATTTGGTGTAT+AGG + chr3_4:64681666-64681685 Msa0514030:CDS 30.0%
ACTTCTAATCTTATCTCTTC+TGG + chr3_4:64681722-64681741 Msa0514030:CDS 30.0%
! TTGTTTGAATCAGATTTTCC+TGG + chr3_4:64681814-64681833 Msa0514030:intron 30.0%
! TTCCTGGTTCTTATTGAATA+TGG + chr3_4:64681830-64681849 Msa0514030:intron 30.0%
TTCCATATTCAATAAGAACC+AGG - chr3_4:64681835-64681854 None:intergenic 30.0%
TTTATGCAATATCAAGTCAG+GGG + chr3_4:64681926-64681945 Msa0514030:intron 30.0%
! GGTTAGTTATGTAGTGAAAA+TGG + chr3_4:64681948-64681967 Msa0514030:intron 30.0%
! TTATATGTTGCTTGTCACTT+AGG + chr3_4:64682142-64682161 Msa0514030:intron 30.0%
! TATATGTTGCTTGTCACTTA+GGG + chr3_4:64682143-64682162 Msa0514030:intron 30.0%
TCATCACTACAAAAATCAGT+GGG - chr3_4:64682207-64682226 None:intergenic 30.0%
TTCATCACTACAAAAATCAG+TGG - chr3_4:64682208-64682227 None:intergenic 30.0%
TACGCCAAGTATAGTATATT+AGG + chr3_4:64682363-64682382 Msa0514030:intron 30.0%
CTAGATATATTTGAAGATCC+TGG + chr3_4:64682437-64682456 Msa0514030:intron 30.0%
ATATATTTGAAGATCCTGGT+GGG + chr3_4:64682441-64682460 Msa0514030:intron 30.0%
CACAACATTACAAAAACACT+TGG - chr3_4:64682519-64682538 None:intergenic 30.0%
TTGTAATGTTGTGAATGACA+TGG + chr3_4:64682526-64682545 Msa0514030:intron 30.0%
GAGAAATCTCCTTTATATGT+TGG - chr3_4:64682649-64682668 None:intergenic 30.0%
TCAAAAGGATTGAATCGAAT+CGG + chr3_4:64682691-64682710 Msa0514030:CDS 30.0%
GAATCGAATCGGTAATTTAT+TGG + chr3_4:64682702-64682721 Msa0514030:CDS 30.0%
TGACAACTATTGCAAATTTG+AGG + chr3_4:64682732-64682751 Msa0514030:CDS 30.0%
TTTGTGAAGGTAATCAAAAC+CGG + chr3_4:64682858-64682877 Msa0514030:intron 30.0%
TATTGCTTAAAGGAGATAAC+TGG - chr3_4:64683064-64683083 None:intergenic 30.0%
GTTATCTCCTTTAAGCAATA+TGG + chr3_4:64683064-64683083 Msa0514030:intron 30.0%
TGAAGTTCCATATTGCTTAA+AGG - chr3_4:64683074-64683093 None:intergenic 30.0%
GTTTAAAAGAGAGAACTAGT+AGG - chr3_4:64683145-64683164 None:intergenic 30.0%
AAAGTAAATAGTACATCTGC+AGG + chr3_4:64683180-64683199 Msa0514030:intron 30.0%
! GTATATAAGGTTTTCGTTGT+GGG + chr3_4:64683455-64683474 Msa0514030:intron 30.0%
! TATATAAGGTTTTCGTTGTG+GGG + chr3_4:64683456-64683475 Msa0514030:intron 30.0%
AGAGATCATACTATGTTGTA+TGG + chr3_4:64683632-64683651 Msa0514030:intron 30.0%
! TATCTGAAAAATGATGATGC+AGG + chr3_4:64683675-64683694 Msa0514030:intron 30.0%
! TAAGTAGTGCATGTTTGTTA+AGG + chr3_4:64683739-64683758 Msa0514030:intron 30.0%
!!! AGTGTTCACTTGCTATATTT+TGG + chr3_4:64683765-64683784 Msa0514030:intron 30.0%
!!! TTCACTTGCTATATTTTGGT+AGG + chr3_4:64683769-64683788 Msa0514030:intron 30.0%
!!! TCACTTGCTATATTTTGGTA+GGG + chr3_4:64683770-64683789 Msa0514030:intron 30.0%
CTCAAGGCAATATAATAACA+TGG - chr3_4:64683902-64683921 None:intergenic 30.0%
! TATTGCCTTGAGATATTTTG+TGG + chr3_4:64683910-64683929 Msa0514030:intron 30.0%
CAAATCCACAAAATATCTCA+AGG - chr3_4:64683918-64683937 None:intergenic 30.0%
! GATATTTTGTGGATTTGTGA+TGG + chr3_4:64683921-64683940 Msa0514030:intron 30.0%
!!! ACTTCATCATCTTCCTTTTT+TGG + chr3_4:64684458-64684477 Msa0514030:intron 30.0%
AATATTCCAGTTTATTGTCC+AGG + chr3_4:64684807-64684826 Msa0514030:CDS 30.0%
! TCATTTTACTCTTTACTGCA+TGG + chr3_4:64684923-64684942 Msa0514030:intron 30.0%
TTGGCAATACAACAGATATA+AGG + chr3_4:64684984-64685003 Msa0514030:intron 30.0%
TGGCAATACAACAGATATAA+GGG + chr3_4:64684985-64685004 Msa0514030:intron 30.0%
! AAGACAGGCATGATTATTTT+AGG + chr3_4:64685043-64685062 Msa0514030:CDS 30.0%
AATACTGCACAAGAATTTGA+TGG + chr3_4:64685139-64685158 Msa0514030:CDS 30.0%
! AACAAGTAGGGAAAGTATAT+AGG - chr3_4:64685244-64685263 None:intergenic 30.0%
GATATAGTACAGCAAAAGTT+TGG - chr3_4:64685283-64685302 None:intergenic 30.0%
CGAAACTTCTTCATTGATAA+AGG + chr3_4:64685400-64685419 Msa0514030:exon 30.0%
AAGTTCCATACCAAAACATT+TGG - chr3_4:64685487-64685506 None:intergenic 30.0%
ATTAAATGTCAATGGCAAAC+TGG - chr3_4:64685587-64685606 None:intergenic 30.0%
!! GGTAAAAAATGCTTGTTATG+TGG - chr3_4:64685635-64685654 None:intergenic 30.0%
! GAATTGAGAGTCATGAATTT+TGG + chr3_4:64685683-64685702 Msa0514030:three_prime_UTR 30.0%
!!! CTATATTTTTTGAAACCGTG+TGG + chr3_4:64685727-64685746 Msa0514030:three_prime_UTR 30.0%
!! TTTTTAGAGATGACTGTGCA+AGG - chr3_4:64681040-64681059 None:intergenic 35.0%
AAATCTCTCAAACCTTCTTC+TGG + chr3_4:64681070-64681089 Msa0514030:five_prime_UTR 35.0%
CTTCTTATTAACAAACGGTC+TGG + chr3_4:64681123-64681142 Msa0514030:five_prime_UTR 35.0%
ACTCAAAACAAAAACTCCAC+GGG - chr3_4:64681219-64681238 None:intergenic 35.0%
GACTCAAAACAAAAACTCCA+CGG - chr3_4:64681220-64681239 None:intergenic 35.0%
! TTCAGATTCTTTGAAGACTG+TGG - chr3_4:64681362-64681381 None:intergenic 35.0%
TGAAATCATAACCCTCGATT+TGG - chr3_4:64681405-64681424 None:intergenic 35.0%
!!! CTTTGTGTCTTTTTGGAACA+TGG + chr3_4:64681582-64681601 Msa0514030:intron 35.0%
TCATCACAATCCTCATCAAT+AGG - chr3_4:64681644-64681663 None:intergenic 35.0%
GGATTGTGATGAAGATAAGA+AGG + chr3_4:64681652-64681671 Msa0514030:CDS 35.0%
TTATGCAATATCAAGTCAGG+GGG + chr3_4:64681927-64681946 Msa0514030:intron 35.0%
TGCAAATCATTGAGCAAACA+CGG - chr3_4:64682038-64682057 None:intergenic 35.0%
! TGTTTGCTCAATGATTTGCA+TGG + chr3_4:64682038-64682057 Msa0514030:intron 35.0%
CAAGAATATGCATGACTATG+AGG + chr3_4:64682285-64682304 Msa0514030:intron 35.0%
! GTATAAAGGTATATGGGTGA+TGG + chr3_4:64682320-64682339 Msa0514030:intron 35.0%
CATGAAAAGCTTGTAATGTG+AGG + chr3_4:64682391-64682410 Msa0514030:intron 35.0%
GATATATTTGAAGATCCTGG+TGG + chr3_4:64682440-64682459 Msa0514030:intron 35.0%
! TTTTCTTGCATCTGTTCTAC+AGG + chr3_4:64682564-64682583 Msa0514030:intron 35.0%
CATGTAGTTGTTACAACTAC+AGG + chr3_4:64682589-64682608 Msa0514030:CDS 35.0%
ACTATTGCAAATTTGAGGAC+TGG + chr3_4:64682737-64682756 Msa0514030:CDS 35.0%
TCAAATGTTGAAGGAGCAAA+AGG + chr3_4:64682777-64682796 Msa0514030:CDS 35.0%
AAATAGTACATCTGCAGGAA+AGG + chr3_4:64683185-64683204 Msa0514030:intron 35.0%
GGTGATACATTTAGACACTA+AGG + chr3_4:64683315-64683334 Msa0514030:intron 35.0%
TACATTTAGACACTAAGGTG+TGG + chr3_4:64683320-64683339 Msa0514030:intron 35.0%
GTTGGAAGTGAAGAGATATA+CGG + chr3_4:64683342-64683361 Msa0514030:intron 35.0%
TATTGGTATGGAAACAATGC+TGG + chr3_4:64683428-64683447 Msa0514030:intron 35.0%
! GGTATATAAGGTTTTCGTTG+TGG + chr3_4:64683454-64683473 Msa0514030:intron 35.0%
! AATTGATTCCAATGACACCA+TGG + chr3_4:64683601-64683620 Msa0514030:intron 35.0%
CGGTATTTGTATAGTGTGAT+TGG + chr3_4:64683702-64683721 Msa0514030:intron 35.0%
ATTATGTTCTTGTTGAGGTG+TGG + chr3_4:64683812-64683831 Msa0514030:intron 35.0%
ACAACACATTCTGCCAAAAA+AGG - chr3_4:64684474-64684493 None:intergenic 35.0%
!!! TTTTTTGGCAGAATGTGTTG+TGG + chr3_4:64684473-64684492 Msa0514030:intron 35.0%
! AATCGAGCTATTAACTTGGA+TGG - chr3_4:64684502-64684521 None:intergenic 35.0%
ATCCAAGTTAATAGCTCGAT+TGG + chr3_4:64684501-64684520 Msa0514030:CDS 35.0%
TCCAAGTTAATAGCTCGATT+GGG + chr3_4:64684502-64684521 Msa0514030:CDS 35.0%
ATGAAAACTCCTACCTTTAC+TGG + chr3_4:64684539-64684558 Msa0514030:CDS 35.0%
TGAAAACTCCTACCTTTACT+GGG + chr3_4:64684540-64684559 Msa0514030:CDS 35.0%
CGAAATTAACAGCATAACGA+TGG - chr3_4:64684660-64684679 None:intergenic 35.0%
GTTAATCCTGGACAATAAAC+TGG - chr3_4:64684816-64684835 None:intergenic 35.0%
TATTGTCCAGGATTAACTGA+TGG + chr3_4:64684819-64684838 Msa0514030:CDS 35.0%
!!! ACAGGCATGATTATTTTAGG+AGG + chr3_4:64685046-64685065 Msa0514030:CDS 35.0%
!! TGCAAATGTGATGTTTTGGA+AGG - chr3_4:64685075-64685094 None:intergenic 35.0%
GAATTTGATGGAAGTGATTC+TGG + chr3_4:64685151-64685170 Msa0514030:CDS 35.0%
AGGATCTGCTAAAACTGTTA+AGG + chr3_4:64685213-64685232 Msa0514030:CDS 35.0%
ATGAAGAAGTTTCGTTCTTG+AGG - chr3_4:64685394-64685413 None:intergenic 35.0%
!! GGTTTGCTGTCAAAAGTAAA+AGG + chr3_4:64685421-64685440 Msa0514030:three_prime_UTR 35.0%
!! TGACTGTCTTGTTATTTGCA+AGG + chr3_4:64685608-64685627 Msa0514030:three_prime_UTR 35.0%
CAAAACTAAGAGAAACCACA+CGG - chr3_4:64685745-64685764 None:intergenic 35.0%
!!! TGTGGTTTCTCTTAGTTTTG+AGG + chr3_4:64685745-64685764 Msa0514030:three_prime_UTR 35.0%
TGTGAAATACAGCAATCAGT+TGG - chr3_4:64685856-64685875 None:intergenic 35.0%
ACTGATTGCTGTATTTCACA+TGG + chr3_4:64685856-64685875 Msa0514030:three_prime_UTR 35.0%
CTGATTGCTGTATTTCACAT+GGG + chr3_4:64685857-64685876 Msa0514030:three_prime_UTR 35.0%
AGAATGAAGGAGGTAGTGAA+TGG - chr3_4:64681105-64681124 None:intergenic 40.0%
TTATTAACAAACGGTCTGGC+CGG + chr3_4:64681127-64681146 Msa0514030:five_prime_UTR 40.0%
GAAACAAAAGCGGTTCAAAC+CGG - chr3_4:64681194-64681213 None:intergenic 40.0%
AAAGAATCTGAAAACCTCGC+AGG + chr3_4:64681370-64681389 Msa0514030:CDS 40.0%
CTCAAATCAATGCTCACAAC+TGG + chr3_4:64681451-64681470 Msa0514030:CDS 40.0%
!! GGTTTTCAAGCTTCCAACTT+TGG + chr3_4:64681472-64681491 Msa0514030:CDS 40.0%
TTTAACGGCATCACCAAAGT+TGG - chr3_4:64681488-64681507 None:intergenic 40.0%
!! GGTTGATGAACCTATTGATG+AGG + chr3_4:64681631-64681650 Msa0514030:CDS 40.0%
TTACCTTTGTCAGCATCACA+TGG + chr3_4:64681763-64681782 Msa0514030:CDS 40.0%
! TGATGGTTCCTTGTTAGCTT+TGG + chr3_4:64682337-64682356 Msa0514030:intron 40.0%
GCGTAATACCAAAGCTAACA+AGG - chr3_4:64682348-64682367 None:intergenic 40.0%
GTAGTTGTTACAACTACAGG+TGG + chr3_4:64682592-64682611 Msa0514030:CDS 40.0%
AAAGGAGATTTCTCTTTGCC+TGG + chr3_4:64682655-64682674 Msa0514030:CDS 40.0%
TGAAGGTAATCAAAACCGGA+TGG + chr3_4:64682862-64682881 Msa0514030:intron 40.0%
ATCTGCAGGAAAGGAATTAC+CGG + chr3_4:64683194-64683213 Msa0514030:intron 40.0%
AATGACTTATGGTTGCTACC+TGG + chr3_4:64683246-64683265 Msa0514030:intron 40.0%
CCAGCCCAACTATTATTATG+TGG - chr3_4:64683297-64683316 None:intergenic 40.0%
CCACATAATAATAGTTGGGC+TGG + chr3_4:64683294-64683313 Msa0514030:intron 40.0%
TTTAGACACTAAGGTGTGGT+TGG + chr3_4:64683324-64683343 Msa0514030:intron 40.0%
TGAAGAGATATACGGCTATC+TGG + chr3_4:64683350-64683369 Msa0514030:intron 40.0%
AGGAAATAGCTTCTACAGGT+TGG + chr3_4:64683374-64683393 Msa0514030:intron 40.0%
!! AATAGCTTCTACAGGTTGGT+CGG + chr3_4:64683378-64683397 Msa0514030:intron 40.0%
! CAATGCTGGAGAGGTATATA+AGG + chr3_4:64683442-64683461 Msa0514030:intron 40.0%
TGTTGTATGGTGTTTAGCAG+TGG + chr3_4:64683645-64683664 Msa0514030:intron 40.0%
GTTGTATGGTGTTTAGCAGT+GGG + chr3_4:64683646-64683665 Msa0514030:intron 40.0%
TTGTATGGTGTTTAGCAGTG+GGG + chr3_4:64683647-64683666 Msa0514030:intron 40.0%
! AAAATGATGATGCAGGCTAG+CGG + chr3_4:64683682-64683701 Msa0514030:intron 40.0%
GAGGTGTGGTTTCTAATAAC+TGG + chr3_4:64683826-64683845 Msa0514030:intron 40.0%
! GATTTTACTCCTGACAGTTC+TGG + chr3_4:64683853-64683872 Msa0514030:intron 40.0%
ATAACATGGTTCAGTTGAGC+CGG - chr3_4:64683888-64683907 None:intergenic 40.0%
AAGGAAGATGATGAAGTGAC+AGG - chr3_4:64684455-64684474 None:intergenic 40.0%
TCCCAATCGAGCTATTAACT+TGG - chr3_4:64684506-64684525 None:intergenic 40.0%
AATGAGCCATCAGTTAATCC+TGG - chr3_4:64684828-64684847 None:intergenic 40.0%
AGGATTAACTGATGGCTCAT+TGG + chr3_4:64684827-64684846 Msa0514030:CDS 40.0%
GGATTAACTGATGGCTCATT+GGG + chr3_4:64684828-64684847 Msa0514030:CDS 40.0%
ACAGATATAAGGGCCATGAA+TGG + chr3_4:64684995-64685014 Msa0514030:intron 40.0%
ATGTACAGCTTCACCATTCA+TGG - chr3_4:64685011-64685030 None:intergenic 40.0%
ATAATCATGCCTGTCTTGCT+AGG - chr3_4:64685040-64685059 None:intergenic 40.0%
!!! GGCATGATTATTTTAGGAGG+CGG + chr3_4:64685049-64685068 Msa0514030:CDS 40.0%
! GCGTTGCAAATGTGATGTTT+TGG - chr3_4:64685079-64685098 None:intergenic 40.0%
GCTGTCAAAAGTAAAAGGTG+TGG + chr3_4:64685426-64685445 Msa0514030:three_prime_UTR 40.0%
! TCAAAAGTAAAAGGTGTGGC+TGG + chr3_4:64685430-64685449 Msa0514030:three_prime_UTR 40.0%
! CAAAAGTAAAAGGTGTGGCT+GGG + chr3_4:64685431-64685450 Msa0514030:three_prime_UTR 40.0%
AAAACATTTGGCACTCACTG+TGG - chr3_4:64685475-64685494 None:intergenic 40.0%
! ACAGTGAGTGCCAAATGTTT+TGG + chr3_4:64685474-64685493 Msa0514030:three_prime_UTR 40.0%
!!! GAGTGCCAAATGTTTTGGTA+TGG + chr3_4:64685479-64685498 Msa0514030:three_prime_UTR 40.0%
GGTATGGAACTTAAAGACCA+AGG + chr3_4:64685495-64685514 Msa0514030:three_prime_UTR 40.0%
TGGAACTTAAAGACCAAGGT+CGG + chr3_4:64685499-64685518 Msa0514030:three_prime_UTR 40.0%
! ATGCAGTGTGTTTGAGATCT+TGG + chr3_4:64685557-64685576 Msa0514030:three_prime_UTR 40.0%
TCATGACTCTCAATTCCTTC+AGG - chr3_4:64685679-64685698 None:intergenic 40.0%
CTGTGCAAGGAATTGGAGAA+GGG - chr3_4:64681027-64681046 None:intergenic 45.0%
ACTGTGCAAGGAATTGGAGA+AGG - chr3_4:64681028-64681047 None:intergenic 45.0%
GAGATGACTGTGCAAGGAAT+TGG - chr3_4:64681034-64681053 None:intergenic 45.0%
! TCCACGGGTTGAAACAAAAG+CGG - chr3_4:64681204-64681223 None:intergenic 45.0%
!! AGGAAAGTGTCTCCAAATCG+AGG + chr3_4:64681390-64681409 Msa0514030:CDS 45.0%
!! GGAAAGTGTCTCCAAATCGA+GGG + chr3_4:64681391-64681410 Msa0514030:CDS 45.0%
GAGGGTTATGATTTCAACCG+TGG + chr3_4:64681409-64681428 Msa0514030:CDS 45.0%
TTGCGTTGAAGCTAGATTGG+AGG + chr3_4:64681606-64681625 Msa0514030:intron 45.0%
GTTGAAGCTAGATTGGAGGT+TGG + chr3_4:64681610-64681629 Msa0514030:intron 45.0%
TCACCATGTGATGCTGACAA+AGG - chr3_4:64681769-64681788 None:intergenic 45.0%
! GCTCAATGATTTGCATGGCT+TGG + chr3_4:64682043-64682062 Msa0514030:intron 45.0%
AGTCGCTTGGCAATTAAGCA+TGG - chr3_4:64682090-64682109 None:intergenic 45.0%
ATAGCTTCATCAAACCCACC+AGG - chr3_4:64682458-64682477 None:intergenic 45.0%
TGCCTTGCGCCAACATATAA+AGG + chr3_4:64682637-64682656 Msa0514030:CDS 45.0%
CTCCTTTATATGTTGGCGCA+AGG - chr3_4:64682642-64682661 None:intergenic 45.0%
TTTGAGCGAAGATAAGCTCC+AGG - chr3_4:64682676-64682695 None:intergenic 45.0%
GGAGCTTATCTTCGCTCAAA+AGG + chr3_4:64682676-64682695 Msa0514030:CDS 45.0%
GTTGAAGGAGCAAAAGGAAG+AGG + chr3_4:64682783-64682802 Msa0514030:CDS 45.0%
TCAAAACCGGATGGTTTGAC+CGG + chr3_4:64682871-64682890 Msa0514030:intron 45.0%
TTTACTCAACCTTTCTCCGC+CGG - chr3_4:64683216-64683235 None:intergenic 45.0%
TGGCAGGAAATAGCTTCTAC+AGG + chr3_4:64683370-64683389 Msa0514030:intron 45.0%
GTATGGAAACAATGCTGGAG+AGG + chr3_4:64683433-64683452 Msa0514030:intron 45.0%
ATGATCTCTCCTCAGTACCA+TGG - chr3_4:64683621-64683640 None:intergenic 45.0%
AATTACTACCGGTCCATCCT+CGG + chr3_4:64684237-64684256 Msa0514030:intron 45.0%
TTTAATGGTCTGACCGAGGA+TGG - chr3_4:64684253-64684272 None:intergenic 45.0%
AAGGTTTAATGGTCTGACCG+AGG - chr3_4:64684257-64684276 None:intergenic 45.0%
!! GTCGCTGGTTCAAGGTTTAA+TGG - chr3_4:64684268-64684287 None:intergenic 45.0%
CATTGAATCACTGTAGTCGC+TGG - chr3_4:64684283-64684302 None:intergenic 45.0%
CCAGGCAACAACAAAAACCA+AGG - chr3_4:64684326-64684345 None:intergenic 45.0%
!!! CCTTGGTTTTTGTTGTTGCC+TGG + chr3_4:64684323-64684342 Msa0514030:intron 45.0%
TGAGCACTAAATGTGACTCC+AGG - chr3_4:64684344-64684363 None:intergenic 45.0%
CTTGTATGCCCAGTAAAGGT+AGG - chr3_4:64684551-64684570 None:intergenic 45.0%
CTACCTTTACTGGGCATACA+AGG + chr3_4:64684549-64684568 Msa0514030:CDS 45.0%
TTGCCTTGTATGCCCAGTAA+AGG - chr3_4:64684555-64684574 None:intergenic 45.0%
CCATGTTGCATTCTGTATGC+AGG - chr3_4:64684690-64684709 None:intergenic 45.0%
CCTGCATACAGAATGCAACA+TGG + chr3_4:64684687-64684706 Msa0514030:CDS 45.0%
TTCCATTCCTTCCAAAACCC+TGG + chr3_4:64684864-64684883 Msa0514030:CDS 45.0%
!!! AATCAGACCAGGGTTTTGGA+AGG - chr3_4:64684874-64684893 None:intergenic 45.0%
CTATGTCCACAATCAGACCA+GGG - chr3_4:64684884-64684903 None:intergenic 45.0%
ACTATGTCCACAATCAGACC+AGG - chr3_4:64684885-64684904 None:intergenic 45.0%
CTGATTGTGGACATAGTGCA+AGG + chr3_4:64684888-64684907 Msa0514030:CDS 45.0%
AACGCCAATATGATGCGCAA+TGG + chr3_4:64685094-64685113 Msa0514030:CDS 45.0%
TGCACCATTGCGCATCATAT+TGG - chr3_4:64685101-64685120 None:intergenic 45.0%
! TCCAGATGAGGCTGTTTCAT+GGG + chr3_4:64685180-64685199 Msa0514030:CDS 45.0%
GTTTCATGGGGGAAAATACG+AGG + chr3_4:64685193-64685212 Msa0514030:CDS 45.0%
TCGTTGCATCACAATGTACC+TGG - chr3_4:64685338-64685357 None:intergenic 45.0%
ATGTTTCAGCAACCAGCAGA+GGG - chr3_4:64685368-64685387 None:intergenic 45.0%
AATGTTTCAGCAACCAGCAG+AGG - chr3_4:64685369-64685388 None:intergenic 45.0%
! CAGTGTGTTTGAGATCTTGG+TGG + chr3_4:64685560-64685579 Msa0514030:three_prime_UTR 45.0%
!!! CATTTTTTTAATAAAAAAAA+AGG - chr3_4:64682954-64682973 None:intergenic 5.0%
!!! AAATTAAAAAGTTATAATTT+TGG + chr3_4:64684080-64684099 Msa0514030:intron 5.0%
!!! AATTAAAAAGTTATAATTTT+GGG + chr3_4:64684081-64684100 Msa0514030:intron 5.0%
! TGGCGATTTGCTCCAGAAGA+AGG - chr3_4:64681085-64681104 None:intergenic 50.0%
GAATCGGTGCAACTTGGATC+CGG - chr3_4:64681149-64681168 None:intergenic 50.0%
GGCACAAAAGCGGTTCGAAT+CGG - chr3_4:64681165-64681184 None:intergenic 50.0%
CCGGAATGATGGCACAAAAG+CGG - chr3_4:64681175-64681194 None:intergenic 50.0%
!! CCGCTTTTGTGCCATCATTC+CGG + chr3_4:64681172-64681191 Msa0514030:five_prime_UTR 50.0%
AGCGGTTCAAACCGGAATGA+TGG - chr3_4:64681186-64681205 None:intergenic 50.0%
!! ACCGCTTTTGTTTCAACCCG+TGG + chr3_4:64681200-64681219 Msa0514030:five_prime_UTR 50.0%
GAAGACTGTGGAGTGAACTG+AGG - chr3_4:64681350-64681369 None:intergenic 50.0%
TTTGGAGACACTTTCCTGCG+AGG - chr3_4:64681387-64681406 None:intergenic 50.0%
!! GCTGTTGATAATCGACGCCA+CGG - chr3_4:64681429-64681448 None:intergenic 50.0%
GGGTTGCGTTGAAGCTAGAT+TGG + chr3_4:64681603-64681622 Msa0514030:intron 50.0%
CAAAACCGGATGGTTTGACC+GGG + chr3_4:64682872-64682891 Msa0514030:intron 50.0%
TGCAGGAAAGGAATTACCGG+CGG + chr3_4:64683197-64683216 Msa0514030:intron 50.0%
AAGGAATTACCGGCGGAGAA+AGG + chr3_4:64683204-64683223 Msa0514030:intron 50.0%
ACTTTCGACCACAGTCATCC+AGG - chr3_4:64683267-64683286 None:intergenic 50.0%
GAGATATACGGCTATCTGGC+AGG + chr3_4:64683354-64683373 Msa0514030:intron 50.0%
TCGTGGACCAGTGGTAGATT+TGG + chr3_4:64683486-64683505 Msa0514030:intron 50.0%
ACCAGTGGTAGATTTGGCCT+TGG + chr3_4:64683492-64683511 Msa0514030:intron 50.0%
CTGCAGCAGTCAAAATGCCA+AGG - chr3_4:64683512-64683531 None:intergenic 50.0%
!!! CTTGGCATTTTGACTGCTGC+AGG + chr3_4:64683510-64683529 Msa0514030:intron 50.0%
!! CCTCAGTACCATGGTGTCAT+TGG - chr3_4:64683612-64683631 None:intergenic 50.0%
CCAATGACACCATGGTACTG+AGG + chr3_4:64683609-64683628 Msa0514030:intron 50.0%
! ACTCCTGACAGTTCTGGTGA+TGG + chr3_4:64683859-64683878 Msa0514030:intron 50.0%
CTACCATCACCAGAACTGTC+AGG - chr3_4:64683865-64683884 None:intergenic 50.0%
!! ACAGTTCTGGTGATGGTAGC+CGG + chr3_4:64683866-64683885 Msa0514030:intron 50.0%
!! TCACTGTAGTCGCTGGTTCA+AGG - chr3_4:64684276-64684295 None:intergenic 50.0%
!!! GACCAGGGTTTTGGAAGGAA+TGG - chr3_4:64684869-64684888 None:intergenic 50.0%
! CCACAATCAGACCAGGGTTT+TGG - chr3_4:64684878-64684897 None:intergenic 50.0%
CCAAAACCCTGGTCTGATTG+TGG + chr3_4:64684875-64684894 Msa0514030:CDS 50.0%
CATGCAAGTCCTAGCAAGAC+AGG + chr3_4:64685028-64685047 Msa0514030:CDS 50.0%
! GTCCAGATGAGGCTGTTTCA+TGG + chr3_4:64685179-64685198 Msa0514030:CDS 50.0%
! CCAGATGAGGCTGTTTCATG+GGG + chr3_4:64685181-64685200 Msa0514030:CDS 50.0%
! CAGATGAGGCTGTTTCATGG+GGG + chr3_4:64685182-64685201 Msa0514030:CDS 50.0%
AACGATAGCATTCCCTCTGC+TGG + chr3_4:64685353-64685372 Msa0514030:CDS 50.0%
GTATGACATACAGCCGACCT+TGG - chr3_4:64685515-64685534 None:intergenic 50.0%
CGGTTCGAATCGGTGCAACT+TGG - chr3_4:64681155-64681174 None:intergenic 55.0%
TTAGCGACACACGAGTCGCT+TGG - chr3_4:64682103-64682122 None:intergenic 55.0%
TTCCAGACCGGACATAGGTC+CGG - chr3_4:64682900-64682919 None:intergenic 55.0%
GAGTCTTCCAGACCGGACAT+AGG - chr3_4:64682905-64682924 None:intergenic 55.0%
GTACTCGGAGTCTTCCAGAC+CGG - chr3_4:64682912-64682931 None:intergenic 55.0%
TGGAAGACTCCGAGTACCAG+TGG + chr3_4:64682915-64682934 Msa0514030:intron 55.0%
AACCTCGAGCCACTGGTACT+CGG - chr3_4:64682927-64682946 None:intergenic 55.0%
AGGTCTAAACCTCGAGCCAC+TGG - chr3_4:64682934-64682953 None:intergenic 55.0%
GGTTGCTACCTGGATGACTG+TGG + chr3_4:64683256-64683275 Msa0514030:intron 55.0%
CGTTGTGGGGAAGTAGTTCG+TGG + chr3_4:64683469-64683488 Msa0514030:intron 55.0%
GGAAGTAGTTCGTGGACCAG+TGG + chr3_4:64683477-64683496 Msa0514030:intron 55.0%
GCCAAGGCCAAATCTACCAC+TGG - chr3_4:64683496-64683515 None:intergenic 55.0%
GCGCAATGGTGCAGACTATG+CGG + chr3_4:64685108-64685127 Msa0514030:CDS 55.0%
!! TTCTGGAGCTCGTCCAGATG+AGG + chr3_4:64685168-64685187 Msa0514030:CDS 55.0%
CCCCATGAAACAGCCTCATC+TGG - chr3_4:64685184-64685203 None:intergenic 55.0%
CGGTTCCCGGTCAAACCATC+CGG - chr3_4:64682880-64682899 None:intergenic 60.0%
CGGATGGTTTGACCGGGAAC+CGG + chr3_4:64682878-64682897 Msa0514030:intron 60.0%
AACCGGACCTATGTCCGGTC+TGG + chr3_4:64682895-64682914 Msa0514030:intron 60.0%
TGGTCTGACCGAGGATGGAC+CGG - chr3_4:64684248-64684267 None:intergenic 60.0%
TGGCACTCACTGTGGAGCTG+CGG - chr3_4:64685467-64685486 None:intergenic 60.0%
CCGGACATAGGTCCGGTTCC+CGG - chr3_4:64682893-64682912 None:intergenic 65.0%
CCGGGAACCGGACCTATGTC+CGG + chr3_4:64682890-64682909 Msa0514030:intron 65.0%
CTCCGAGTACCAGTGGCTCG+AGG + chr3_4:64682922-64682941 Msa0514030:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64681004 64685899 64681004 ID=Msa0514030;Name=Msa0514030
chr3_4 mRNA 64681004 64685899 64681004 ID=Msa0514030-mRNA-1;Parent=Msa0514030;Name=Msa0514030-mRNA-1;_AED=0.24;_eAED=0.24;_QI=303|0.83|0.85|1|1|1|7|483|415
chr3_4 exon 64681004 64681522 64681004 ID=Msa0514030-mRNA-1:exon:16266;Parent=Msa0514030-mRNA-1
chr3_4 exon 64681617 64681784 64681617 ID=Msa0514030-mRNA-1:exon:16267;Parent=Msa0514030-mRNA-1
chr3_4 exon 64682586 64682804 64682586 ID=Msa0514030-mRNA-1:exon:16268;Parent=Msa0514030-mRNA-1
chr3_4 exon 64684484 64684708 64684484 ID=Msa0514030-mRNA-1:exon:16269;Parent=Msa0514030-mRNA-1
chr3_4 exon 64684804 64684909 64684804 ID=Msa0514030-mRNA-1:exon:16270;Parent=Msa0514030-mRNA-1
chr3_4 exon 64684999 64685234 64684999 ID=Msa0514030-mRNA-1:exon:16271;Parent=Msa0514030-mRNA-1
chr3_4 exon 64685339 64685899 64685339 ID=Msa0514030-mRNA-1:exon:16272;Parent=Msa0514030-mRNA-1
chr3_4 five_prime_UTR 64681004 64681306 64681004 ID=Msa0514030-mRNA-1:five_prime_utr;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64681307 64681522 64681307 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64681617 64681784 64681617 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64682586 64682804 64682586 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64684484 64684708 64684484 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64684804 64684909 64684804 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64684999 64685234 64684999 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 CDS 64685339 64685416 64685339 ID=Msa0514030-mRNA-1:cds;Parent=Msa0514030-mRNA-1
chr3_4 three_prime_UTR 64685417 64685899 64685417 ID=Msa0514030-mRNA-1:three_prime_utr;Parent=Msa0514030-mRNA-1
Gene Sequence

>Msa0514030

ATGAGTGAAACAAAGCAGCAAGAAGATGATACAGTTATGTCCTCAGTTCACTCCACAGTCTTCAAAGAATCTGAAAACCTCGCAGGAAAGTGTCTCCAAATCGAGGGTTATGATTTCAACCGTGGCGTCGATTATCAACAGCTTCTCAAATCAATGCTCACAACTGGTTTTCAAGCTTCCAACTTTGGTGATGCCGTTAAAGTCGTTAATCAAATGCTAGATTGGAGGTTGGTTGATGAACCTATTGATGAGGATTGTGATGAAGATAAGAAGGATTTGGTGTATAGGAAATCTGTTACATGTAAAGTGTTTTTGGGTTTCACTTCTAATCTTATCTCTTCTGGTGTTAGAGATGTTGTTCGTTACCTTTGTCAGCATCACATGGTTCATGTAGTTGTTACAACTACAGGTGGCATTGAAGAAGATCTTATAAAGTGCCTTGCGCCAACATATAAAGGAGATTTCTCTTTGCCTGGAGCTTATCTTCGCTCAAAAGGATTGAATCGAATCGGTAATTTATTGGTCCCTAATGACAACTATTGCAAATTTGAGGACTGGATTATTCCTATTTTTAATCAAATGTTGAAGGAGCAAAAGGAAGAGAATGTGTTGTGGACACCATCCAAGTTAATAGCTCGATTGGGAAAAGAAATCAACAATGAAAACTCCTACCTTTACTGGGCATACAAGGCAAGACTGATATCTAGTTTAGATTTTCAGCAATATATTATTCTCTACTTCATTTCTGATTCAAATCTTTACACTAGTTTCTTTTTCCATCGTTATGCTGTTAATTTCGTAGATATCCTGCATACAGAATGCAACATGAACAATATTCCAGTTTATTGTCCAGGATTAACTGATGGCTCATTGGGTGACATGCTGTACTTCCATTCCTTCCAAAACCCTGGTCTGATTGTGGACATAGTGCAAGATATAAGGGCCATGAATGGTGAAGCTGTACATGCAAGTCCTAGCAAGACAGGCATGATTATTTTAGGAGGCGGCCTTCCAAAACATCACATTTGCAACGCCAATATGATGCGCAATGGTGCAGACTATGCGGTTTTTATTAATACTGCACAAGAATTTGATGGAAGTGATTCTGGAGCTCGTCCAGATGAGGCTGTTTCATGGGGGAAAATACGAGGATCTGCTAAAACTGTTAAGGTACATTGTGATGCAACGATAGCATTCCCTCTGCTGGTTGCTGAAACATTTGCCTCAAGAACGAAACTTCTTCATTGA
Protein sequence

>Msa0514030

MSETKQQEDDTVMSSVHSTVFKESENLAGKCLQIEGYDFNRGVDYQQLLKSMLTTGFQASNFGDAVKVVNQMLDWRLVDEPIDEDCDEDKKDLVYRKSVTCKVFLGFTSNLISSGVRDVVRYLCQHHMVHVVVTTTGGIEEDLIKCLAPTYKGDFSLPGAYLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFNQMLKEQKEENVLWTPSKLIARLGKEINNENSYLYWAYKARLISSLDFQQYIILYFISDSNLYTSFFFHRYAVNFVDILHTECNMNNIPVYCPGLTDGSLGDMLYFHSFQNPGLIVDIVQDIRAMNGEAVHASPSKTGMIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRTKLLH*