Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373160 | XP_039684891.1 | 86.650 | 412 | 8 | 2 | 1 | 412 | 1 | 365 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373160 | sp|Q9FI94|DHYS_ARATH | 75.000 | 404 | 54 | 2 | 8 | 410 | 2 | 359 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373160 | A0A1S2YHD3 | 78.313 | 415 | 42 | 2 | 1 | 415 | 1 | 367 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0373160 | 0.817990 | 2.475996e-52 | -8.615850e-47 |
| Msa0011170 | Msa0373160 | 0.803767 | 2.979704e-49 | -8.615850e-47 |
| Msa0017510 | Msa0373160 | 0.820490 | 6.672873e-53 | -8.615850e-47 |
| Msa0020930 | Msa0373160 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0036140 | Msa0373160 | 0.817622 | 2.997602e-52 | -8.615850e-47 |
| Msa0040450 | Msa0373160 | 0.807152 | 5.812506e-50 | -8.615850e-47 |
| Msa0051770 | Msa0373160 | 0.809293 | 2.032285e-50 | -8.615850e-47 |
| Msa0140780 | Msa0373160 | 0.825095 | 5.650007e-54 | -8.615850e-47 |
| Msa0157290 | Msa0373160 | 0.819996 | 8.662447e-53 | -8.615850e-47 |
| Msa0159930 | Msa0373160 | 0.808102 | 3.651492e-50 | -8.615850e-47 |
| Msa0166870 | Msa0373160 | 0.809152 | 2.179196e-50 | -8.615850e-47 |
| Msa0188830 | Msa0373160 | 0.821046 | 4.970964e-53 | -8.615850e-47 |
| Msa0195000 | Msa0373160 | 0.807935 | 3.963166e-50 | -8.615850e-47 |
| Msa0200260 | Msa0373160 | 0.838793 | 2.328037e-57 | -8.615850e-47 |
| Msa0213520 | Msa0373160 | 0.800994 | 1.109728e-48 | -8.615850e-47 |
| Msa0220580 | Msa0373160 | 0.818958 | 1.493618e-52 | -8.615850e-47 |
| Msa0373160 | Msa0373930 | 0.820254 | 7.558480e-53 | -8.615850e-47 |
| Msa0373160 | Msa0376350 | 0.820238 | 7.624062e-53 | -8.615850e-47 |
| Msa0373160 | Msa0379640 | 0.802346 | 5.860701e-49 | -8.615850e-47 |
| Msa0373160 | Msa0380740 | 0.807686 | 4.478178e-50 | -8.615850e-47 |
| Msa0373160 | Msa0389340 | 0.801342 | 9.422917e-49 | -8.615850e-47 |
| Msa0373160 | Msa0398710 | 0.803424 | 3.510181e-49 | -8.615850e-47 |
| Msa0373160 | Msa0410650 | 0.817768 | 2.778552e-52 | -8.615850e-47 |
| Msa0373160 | Msa0424790 | 0.807715 | 4.414679e-50 | -8.615850e-47 |
| Msa0373160 | Msa0426400 | 0.806248 | 9.020728e-50 | -8.615850e-47 |
| Msa0373160 | Msa0440750 | 0.806098 | 9.701596e-50 | -8.615850e-47 |
| Msa0373160 | Msa0467680 | 0.950127 | 3.126095e-108 | -8.615850e-47 |
| Msa0373160 | Msa0480980 | 0.816312 | 5.901016e-52 | -8.615850e-47 |
| Msa0373160 | Msa0484780 | 0.819321 | 1.235193e-52 | -8.615850e-47 |
| Msa0373160 | Msa0507680 | 0.832640 | 8.425294e-56 | -8.615850e-47 |
| Msa0373160 | Msa0509610 | 0.801269 | 9.750672e-49 | -8.615850e-47 |
| Msa0373160 | Msa0512900 | 0.803744 | 3.012187e-49 | -8.615850e-47 |
| Msa0373160 | Msa0514030 | 0.940735 | 1.402362e-100 | -8.615850e-47 |
| Msa0373160 | Msa0516170 | 0.802094 | 6.603702e-49 | -8.615850e-47 |
| Msa0373160 | Msa0521540 | 0.801345 | 9.405536e-49 | -8.615850e-47 |
| Msa0373160 | Msa0523460 | 0.816639 | 4.986602e-52 | -8.615850e-47 |
| Msa0373160 | Msa0555020 | 0.804105 | 2.534198e-49 | -8.615850e-47 |
| Msa0373160 | Msa0563840 | 0.808290 | 3.329842e-50 | -8.615850e-47 |
| Msa0373160 | Msa0581760 | 0.804508 | 2.088880e-49 | -8.615850e-47 |
| Msa0373160 | Msa0599890 | 0.808042 | 3.761928e-50 | -8.615850e-47 |
| Msa0373160 | Msa0602240 | 0.813193 | 2.897029e-51 | -8.615850e-47 |
| Msa0373160 | Msa0602250 | 0.813355 | 2.669064e-51 | -8.615850e-47 |
| Msa0373160 | Msa0648880 | 0.813065 | 3.090589e-51 | -8.615850e-47 |
| Msa0373160 | Msa0657610 | 0.801397 | 9.177638e-49 | -8.615850e-47 |
| Msa0373160 | Msa0657970 | 0.844898 | 5.685223e-59 | -8.615850e-47 |
| Msa0373160 | Msa0667050 | 0.809935 | 1.479306e-50 | -8.615850e-47 |
| Msa0373160 | Msa0669440 | 0.813093 | 3.047996e-51 | -8.615850e-47 |
| Msa0373160 | Msa0691380 | 0.815820 | 7.601548e-52 | -8.615850e-47 |
| Msa0373160 | Msa0692230 | 0.802469 | 5.529418e-49 | -8.615850e-47 |
| Msa0373160 | Msa0696640 | 0.803554 | 3.298439e-49 | -8.615850e-47 |
| Msa0373160 | Msa0777790 | 0.800995 | 1.109320e-48 | -8.615850e-47 |
| Msa0373160 | Msa0777850 | 0.807990 | 3.857907e-50 | -8.615850e-47 |
| Msa0373160 | Msa0867890 | 0.800478 | 1.414606e-48 | -8.615850e-47 |
| Msa0373160 | Msa0880140 | 0.816153 | 6.403083e-52 | -8.615850e-47 |
| Msa0373160 | Msa0909120 | 0.805135 | 1.545300e-49 | -8.615850e-47 |
| Msa0373160 | Msa0909140 | 0.812490 | 4.130562e-51 | -8.615850e-47 |
| Msa0373160 | Msa0933230 | 0.810933 | 9.009582e-51 | -8.615850e-47 |
| Msa0373160 | Msa0938220 | 0.814873 | 1.234370e-51 | -8.615850e-47 |
| Msa0373160 | Msa0993290 | 0.825776 | 3.897315e-54 | -8.615850e-47 |
| Msa0373160 | Msa0993600 | 0.826624 | 2.449553e-54 | -8.615850e-47 |
| Msa0373160 | Msa1044420 | 0.809326 | 2.000123e-50 | -8.615850e-47 |
| Msa0373160 | Msa1079590 | 0.802262 | 6.098818e-49 | -8.615850e-47 |
| Msa0373160 | Msa1082500 | 0.831585 | 1.535668e-55 | -8.615850e-47 |
| Msa0373160 | Msa1085200 | 0.823162 | 1.606605e-53 | -8.615850e-47 |
| Msa0373160 | Msa1085300 | 0.812871 | 3.408024e-51 | -8.615850e-47 |
| Msa0373160 | Msa1090320 | 0.801274 | 9.727548e-49 | -8.615850e-47 |
| Msa0373160 | Msa1098560 | 0.804699 | 1.905741e-49 | -8.615850e-47 |
| Msa0373160 | Msa1170730 | 0.807496 | 4.913311e-50 | -8.615850e-47 |
| Msa0373160 | Msa1172670 | 0.803951 | 2.728076e-49 | -8.615850e-47 |
| Msa0373160 | Msa1186060 | 0.811300 | 7.502424e-51 | -8.615850e-47 |
| Msa0373160 | Msa1222970 | 0.806979 | 6.324024e-50 | -8.615850e-47 |
| Msa0373160 | Msa1228210 | 0.812263 | 4.628615e-51 | -8.615850e-47 |
| Msa0373160 | Msa1238930 | 0.803681 | 3.103345e-49 | -8.615850e-47 |
| Msa0373160 | Msa1242220 | 0.831715 | 1.426689e-55 | -8.615850e-47 |
| Msa0373160 | Msa1270610 | 0.814701 | 1.347284e-51 | -8.615850e-47 |
| Msa0373160 | Msa1271280 | 0.812359 | 4.410645e-51 | -8.615850e-47 |
| Msa0373160 | Msa1271300 | 0.823942 | 1.055240e-53 | -8.615850e-47 |
| Msa0373160 | Msa1283860 | 0.839555 | 1.477391e-57 | -8.615850e-47 |
| Msa0373160 | Msa1308380 | 0.822059 | 2.900478e-53 | -8.615850e-47 |
| Msa0373160 | Msa1322890 | 0.824900 | 6.282385e-54 | -8.615850e-47 |
| Msa0373160 | Msa1324780 | 0.802136 | 6.472792e-49 | -8.615850e-47 |
| Msa0373160 | Msa1350840 | 0.802440 | 5.603868e-49 | -8.615850e-47 |
| Msa0373160 | Msa1353980 | 0.813629 | 2.323192e-51 | -8.615850e-47 |
| Msa0373160 | Msa1357530 | 0.810875 | 9.273581e-51 | -8.615850e-47 |
| Msa0373160 | Msa1367080 | 0.807229 | 5.598656e-50 | -8.615850e-47 |
| Msa0373160 | Msa1372760 | 0.804846 | 1.775687e-49 | -8.615850e-47 |
| Msa0373160 | Msa1384350 | 0.813779 | 2.153030e-51 | -8.615850e-47 |
| Msa0373160 | Msa1390050 | 0.819497 | 1.126005e-52 | -8.615850e-47 |
| Msa0373160 | Msa1392260 | 0.823037 | 1.717895e-53 | -8.615850e-47 |
| Msa0373160 | Msa1411020 | 0.813316 | 2.722904e-51 | -8.615850e-47 |
| Msa0373160 | Msa1424290 | 0.812929 | 3.310249e-51 | -8.615850e-47 |
| Msa0373160 | Msa1427760 | 0.826351 | 2.845191e-54 | -8.615850e-47 |
| Msa0373160 | Msa1429900 | 0.820432 | 6.882017e-53 | -8.615850e-47 |
| Msa0373160 | Msa1434350 | 0.815131 | 1.081958e-51 | -8.615850e-47 |
| Msa0373160 | Msa1438250 | 0.805735 | 1.156611e-49 | -8.615850e-47 |
| Msa0373160 | Msa1439320 | 0.820196 | 7.793075e-53 | -8.615850e-47 |
| Msa0373160 | Msa1454120 | 0.817982 | 2.485667e-52 | -8.615850e-47 |
| Msa0373160 | Msa1460020 | 0.802861 | 4.588889e-49 | -8.615850e-47 |
| Msa0373160 | Msa1460050 | 0.808275 | 3.354515e-50 | -8.615850e-47 |
| Msa0373160 | Msa1464940 | 0.806589 | 7.643330e-50 | -8.615850e-47 |
| Msa0243100 | Msa0373160 | 0.847411 | 1.176021e-59 | -8.615850e-47 |
| Msa0243710 | Msa0373160 | 0.804338 | 2.265982e-49 | -8.615850e-47 |
| Msa0244860 | Msa0373160 | 0.803800 | 2.933059e-49 | -8.615850e-47 |
| Msa0270100 | Msa0373160 | 0.807643 | 4.572440e-50 | -8.615850e-47 |
| Msa0287650 | Msa0373160 | 0.850797 | 1.346309e-60 | -8.615850e-47 |
| Msa0345970 | Msa0373160 | 0.819384 | 1.194915e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373160 | MtrunA17_Chr8g0376541 | 86.650 | 412 | 8 | 2 | 1 | 412 | 1 | 365 | 0.0 | 700 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373160 | AT5G05920.1 | 75.000 | 404 | 54 | 2 | 8 | 410 | 2 | 359 | 0.0 | 633 |
| Msa0373160 | AT5G05920.2 | 76.241 | 282 | 21 | 1 | 129 | 410 | 6 | 241 | 8.66e-158 | 445 |
| Msa0373160 | AT5G05920.3 | 71.889 | 217 | 15 | 1 | 194 | 410 | 1 | 171 | 2.32e-108 | 317 |
Find 130 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGAGAGTCATGAATTT+TGG | 0.197013 | 3_1:-72172843 | Msa0373160:three_prime_UTR |
| GAATTTGATGGAAGTGATTC+TGG | 0.236275 | 3_1:-72173375 | Msa0373160:CDS |
| GAATCGAATCGGTAATTTAT+TGG | 0.240496 | 3_1:-72175822 | Msa0373160:CDS |
| CGAAACTTCTTCATTGATAA+AGG | 0.252532 | 3_1:-72173126 | Msa0373160:exon |
| CCACAATCAGACCAGGGTTT+TGG | 0.262442 | 3_1:+72173651 | None:intergenic |
| TTGGCAATACAACAGATATA+AGG | 0.272646 | 3_1:-72173542 | Msa0373160:intron |
| ATGAAAACTCCTACCTTTAC+TGG | 0.273857 | 3_1:-72173987 | Msa0373160:CDS |
| ACTTCTAATCTTATCTCTTC+TGG | 0.277640 | 3_1:-72176803 | Msa0373160:CDS |
| AAATCTCTCAAACCTTCTTC+TGG | 0.298066 | 3_1:-72177455 | Msa0373160:five_prime_UTR |
| AATTTGCAATAGTTGTCATT+AGG | 0.299937 | 3_1:+72175797 | None:intergenic |
| ATGTACAGCTTCACCATTCA+TGG | 0.318700 | 3_1:+72173518 | None:intergenic |
| ATTTGCAATAGTTGTCATTA+GGG | 0.327811 | 3_1:+72175798 | None:intergenic |
| GAGATGACTGTGCAAGGAAT+TGG | 0.329274 | 3_1:+72177495 | None:intergenic |
| CATTTGATTAACGACTTTAA+CGG | 0.349642 | 3_1:+72177025 | None:intergenic |
| GTTAATCCTGGACAATAAAC+TGG | 0.352135 | 3_1:+72173713 | None:intergenic |
| TCATGACTCTCAATTCCTTC+AGG | 0.357834 | 3_1:+72172850 | None:intergenic |
| TGAAATCATAACCCTCGATT+TGG | 0.358260 | 3_1:+72177123 | None:intergenic |
| TGCCTTGCGCCAACATATAA+AGG | 0.358724 | 3_1:-72175887 | Msa0373160:CDS |
| AATACTGCACAAGAATTTGA+TGG | 0.361085 | 3_1:-72173387 | Msa0373160:CDS |
| GGTTTGCTGTCAAAAGTAAA+AGG | 0.384187 | 3_1:-72173105 | Msa0373160:three_prime_UTR |
| GAAAAGTTTATCAACTATTA+CGG | 0.385306 | 3_1:-72172722 | Msa0373160:three_prime_UTR |
| ATGCAGTGTGTTTGAGATCT+TGG | 0.389710 | 3_1:-72172969 | Msa0373160:three_prime_UTR |
| TGCACCATTGCGCATCATAT+TGG | 0.397312 | 3_1:+72173428 | None:intergenic |
| ATTAAATGTCAATGGCAAAC+TGG | 0.398783 | 3_1:+72172942 | None:intergenic |
| CCCCATGAAACAGCCTCATC+TGG | 0.399289 | 3_1:+72173345 | None:intergenic |
| AGGATTAACTGATGGCTCAT+TGG | 0.401238 | 3_1:-72173699 | Msa0373160:CDS |
| GTCCAGATGAGGCTGTTTCA+TGG | 0.409575 | 3_1:-72173347 | Msa0373160:CDS |
| CTCAAATCAATGCTCACAAC+TGG | 0.413436 | 3_1:-72177074 | Msa0373160:CDS |
| AAAGGAGATTTCTCTTTGCC+TGG | 0.415853 | 3_1:-72175869 | Msa0373160:CDS |
| TGACAACTATTGCAAATTTG+AGG | 0.416421 | 3_1:-72175792 | Msa0373160:CDS |
| TGGCAATACAACAGATATAA+GGG | 0.421254 | 3_1:-72173541 | Msa0373160:intron |
| AAGTTCCATACCAAAACATT+TGG | 0.422024 | 3_1:+72173042 | None:intergenic |
| TCATCACAATCCTCATCAAT+AGG | 0.426415 | 3_1:+72176884 | None:intergenic |
| GCGTTGCAAATGTGATGTTT+TGG | 0.427804 | 3_1:+72173450 | None:intergenic |
| CTTCTTATTAACAAACGGTC+TGG | 0.432451 | 3_1:-72177402 | Msa0373160:five_prime_UTR |
| GGATTAACTGATGGCTCATT+GGG | 0.432714 | 3_1:-72173698 | Msa0373160:CDS |
| ACAGTGAGTGCCAAATGTTT+TGG | 0.432869 | 3_1:-72173052 | Msa0373160:three_prime_UTR |
| ATTCTGTATGCAGGATATCT+AGG | 0.438777 | 3_1:+72173848 | None:intergenic |
| CGTTAAAGTCGTTAATCAAA+TGG | 0.440345 | 3_1:-72177024 | Msa0373160:intron |
| ATAAGAAGGATTTGGTGTAT+AGG | 0.440396 | 3_1:-72176859 | Msa0373160:CDS |
| AATATTCCAGTTTATTGTCC+AGG | 0.444941 | 3_1:-72173719 | Msa0373160:CDS |
| TCCAGATGAGGCTGTTTCAT+GGG | 0.445073 | 3_1:-72173346 | Msa0373160:CDS |
| CATGTAGTTGTTACAACTAC+AGG | 0.448520 | 3_1:-72175935 | Msa0373160:CDS |
| AGGATCTGCTAAAACTGTTA+AGG | 0.452905 | 3_1:-72173313 | Msa0373160:intron |
| ATCCAAGTTAATAGCTCGAT+TGG | 0.455505 | 3_1:-72174025 | Msa0373160:CDS |
| TGATGAAGATAAGAAGGATT+TGG | 0.455823 | 3_1:-72176867 | Msa0373160:CDS |
| GGGTTGCGTTGAAGCTAGAT+TGG | 0.456974 | 3_1:-72176922 | Msa0373160:intron |
| CTACCTTTACTGGGCATACA+AGG | 0.457425 | 3_1:-72173977 | Msa0373160:CDS |
| TCAAAAGTAAAAGGTGTGGC+TGG | 0.460091 | 3_1:-72173096 | Msa0373160:three_prime_UTR |
| TCATTCTTCTTATTAACAAA+CGG | 0.461967 | 3_1:-72177407 | Msa0373160:five_prime_UTR |
| TCAAATGTTGAAGGAGCAAA+AGG | 0.465723 | 3_1:-72175747 | Msa0373160:CDS |
| TGGCGATTTGCTCCAGAAGA+AGG | 0.466905 | 3_1:+72177443 | None:intergenic |
| TTTAACGGCATCACCAAAGT+TGG | 0.472768 | 3_1:+72177040 | None:intergenic |
| TTTGTTAATAAGAAGAATGA+AGG | 0.474332 | 3_1:+72177410 | None:intergenic |
| GGAGCTTATCTTCGCTCAAA+AGG | 0.483770 | 3_1:-72175848 | Msa0373160:CDS |
| TCCCAATCGAGCTATTAACT+TGG | 0.489104 | 3_1:+72174023 | None:intergenic |
| GAGAAATCTCCTTTATATGT+TGG | 0.490219 | 3_1:+72175878 | None:intergenic |
| ACAGTCAAATTAAATGTCAA+TGG | 0.492199 | 3_1:+72172934 | None:intergenic |
| ACTATTGCAAATTTGAGGAC+TGG | 0.495960 | 3_1:-72175787 | Msa0373160:CDS |
| AACGATAGCATTCCCTCTGC+TGG | 0.497507 | 3_1:-72173173 | Msa0373160:CDS |
| GAATCGGTGCAACTTGGATC+CGG | 0.497715 | 3_1:+72177379 | None:intergenic |
| CGGTTCGAATCGGTGCAACT+TGG | 0.499771 | 3_1:+72177373 | None:intergenic |
| GAAACAAAAGCGGTTCAAAC+CGG | 0.504014 | 3_1:+72177334 | None:intergenic |
| ATAATCATGCCTGTCTTGCT+AGG | 0.505038 | 3_1:+72173489 | None:intergenic |
| GGCACAAAAGCGGTTCGAAT+CGG | 0.509287 | 3_1:+72177363 | None:intergenic |
| GTTGAAGGAGCAAAAGGAAG+AGG | 0.511154 | 3_1:-72175741 | Msa0373160:intron |
| ATGAAGAAGTTTCGTTCTTG+AGG | 0.511791 | 3_1:+72173135 | None:intergenic |
| CATGCAAGTCCTAGCAAGAC+AGG | 0.515398 | 3_1:-72173498 | Msa0373160:CDS |
| AGCGGTTCAAACCGGAATGA+TGG | 0.516003 | 3_1:+72177342 | None:intergenic |
| TTATTAACAAACGGTCTGGC+CGG | 0.517890 | 3_1:-72177398 | Msa0373160:five_prime_UTR |
| TCCAAGTTAATAGCTCGATT+GGG | 0.518058 | 3_1:-72174024 | Msa0373160:CDS |
| CCATGTTGCATTCTGTATGC+AGG | 0.521582 | 3_1:+72173839 | None:intergenic |
| CCAAAACCCTGGTCTGATTG+TGG | 0.527845 | 3_1:-72173651 | Msa0373160:CDS |
| TGACTGTCTTGTTATTTGCA+AGG | 0.529767 | 3_1:-72172918 | Msa0373160:three_prime_UTR |
| TCAAAAGGATTGAATCGAAT+CGG | 0.532537 | 3_1:-72175833 | Msa0373160:CDS |
| AATCGAGCTATTAACTTGGA+TGG | 0.538542 | 3_1:+72174027 | None:intergenic |
| GTTAATAAGAAGAATGAAGG+AGG | 0.539699 | 3_1:+72177413 | None:intergenic |
| AATGAGCCATCAGTTAATCC+TGG | 0.542845 | 3_1:+72173701 | None:intergenic |
| AGAATGAAGGAGGTAGTGAA+TGG | 0.544372 | 3_1:+72177423 | None:intergenic |
| TTCCATTCCTTCCAAAACCC+TGG | 0.545098 | 3_1:-72173662 | Msa0373160:CDS |
| CTCCTTTATATGTTGGCGCA+AGG | 0.549124 | 3_1:+72175885 | None:intergenic |
| GGATTGTGATGAAGATAAGA+AGG | 0.551599 | 3_1:-72176873 | Msa0373160:CDS |
| TGTGAAATACAGCAATCAGT+TGG | 0.556444 | 3_1:+72172673 | None:intergenic |
| TATTGTCCAGGATTAACTGA+TGG | 0.556513 | 3_1:-72173707 | Msa0373160:CDS |
| TTGCCTTGTATGCCCAGTAA+AGG | 0.557308 | 3_1:+72173974 | None:intergenic |
| AAAGAATCTGAAAACCTCGC+AGG | 0.559309 | 3_1:-72177155 | Msa0373160:CDS |
| TTTGAGCGAAGATAAGCTCC+AGG | 0.562914 | 3_1:+72175851 | None:intergenic |
| TTGCGTTGAAGCTAGATTGG+AGG | 0.571247 | 3_1:-72176919 | Msa0373160:intron |
| TTCAGATTCTTTGAAGACTG+TGG | 0.575222 | 3_1:+72177166 | None:intergenic |
| CCAGATGAGGCTGTTTCATG+GGG | 0.576966 | 3_1:-72173345 | Msa0373160:CDS |
| ACAGATATAAGGGCCATGAA+TGG | 0.581048 | 3_1:-72173531 | Msa0373160:intron |
| CTTGTATGCCCAGTAAAGGT+AGG | 0.581698 | 3_1:+72173978 | None:intergenic |
| GGAAATTAACAGCATAACGA+TGG | 0.581765 | 3_1:+72173869 | None:intergenic |
| TGAAAACTCCTACCTTTACT+GGG | 0.585821 | 3_1:-72173986 | Msa0373160:CDS |
| TTCTGGAGCTCGTCCAGATG+AGG | 0.586670 | 3_1:-72173358 | Msa0373160:CDS |
| CAGTGTGTTTGAGATCTTGG+TGG | 0.588371 | 3_1:-72172966 | Msa0373160:three_prime_UTR |
| CAAAAGTAAAAGGTGTGGCT+GGG | 0.590827 | 3_1:-72173095 | Msa0373160:three_prime_UTR |
| GTATGACATACAGCCGACCT+TGG | 0.591390 | 3_1:+72173014 | None:intergenic |
| ACTGTGCAAGGAATTGGAGA+AGG | 0.595975 | 3_1:+72177501 | None:intergenic |
| TTACCTTTGTCAGCATCACA+TGG | 0.601287 | 3_1:-72176762 | Msa0373160:intron |
| AATGTTTCAGCAACCAGCAG+AGG | 0.610798 | 3_1:+72173160 | None:intergenic |
| ACTGATTGCTGTATTTCACA+TGG | 0.611719 | 3_1:-72172670 | Msa0373160:three_prime_UTR |
| GGTATGGAACTTAAAGACCA+AGG | 0.619116 | 3_1:-72173031 | Msa0373160:three_prime_UTR |
| TGGCACTCACTGTGGAGCTG+CGG | 0.620478 | 3_1:+72173062 | None:intergenic |
| AGGAAAGTGTCTCCAAATCG+AGG | 0.620843 | 3_1:-72177135 | Msa0373160:CDS |
| GGTTGATGAACCTATTGATG+AGG | 0.625189 | 3_1:-72176894 | Msa0373160:CDS |
| TGGAACTTAAAGACCAAGGT+CGG | 0.627119 | 3_1:-72173027 | Msa0373160:three_prime_UTR |
| ACTATGTCCACAATCAGACC+AGG | 0.627546 | 3_1:+72173644 | None:intergenic |
| ATGTTTCAGCAACCAGCAGA+GGG | 0.629527 | 3_1:+72173161 | None:intergenic |
| CTGTGCAAGGAATTGGAGAA+GGG | 0.629661 | 3_1:+72177502 | None:intergenic |
| GTTGAAGCTAGATTGGAGGT+TGG | 0.633831 | 3_1:-72176915 | Msa0373160:intron |
| GGAAAGTGTCTCCAAATCGA+GGG | 0.640745 | 3_1:-72177134 | Msa0373160:CDS |
| CTGATTGCTGTATTTCACAT+GGG | 0.642069 | 3_1:-72172669 | Msa0373160:three_prime_UTR |
| AAAACATTTGGCACTCACTG+TGG | 0.643884 | 3_1:+72173054 | None:intergenic |
| GAGGGTTATGATTTCAACCG+TGG | 0.648518 | 3_1:-72177116 | Msa0373160:CDS |
| AACGCCAATATGATGCGCAA+TGG | 0.648917 | 3_1:-72173432 | Msa0373160:CDS |
| CCTGCATACAGAATGCAACA+TGG | 0.652599 | 3_1:-72173839 | Msa0373160:intron |
| CCGGAATGATGGCACAAAAG+CGG | 0.655753 | 3_1:+72177353 | None:intergenic |
| GCTGTTGATAATCGACGCCA+CGG | 0.656868 | 3_1:+72177099 | None:intergenic |
| TCCACGGGTTGAAACAAAAG+CGG | 0.661658 | 3_1:+72177324 | None:intergenic |
| TTTGGAGACACTTTCCTGCG+AGG | 0.661904 | 3_1:+72177141 | None:intergenic |
| CTGATTGTGGACATAGTGCA+AGG | 0.662154 | 3_1:-72173638 | Msa0373160:intron |
| TCACCATGTGATGCTGACAA+AGG | 0.672957 | 3_1:+72176759 | None:intergenic |
| GAAGACTGTGGAGTGAACTG+AGG | 0.694757 | 3_1:+72177178 | None:intergenic |
| CAAAACTAAGAGAAACCACA+CGG | 0.700672 | 3_1:+72172784 | None:intergenic |
| GTAGTTGTTACAACTACAGG+TGG | 0.721014 | 3_1:-72175932 | Msa0373160:CDS |
| GCTGTCAAAAGTAAAAGGTG+TGG | 0.727672 | 3_1:-72173100 | Msa0373160:three_prime_UTR |
| CTATGTCCACAATCAGACCA+GGG | 0.729813 | 3_1:+72173645 | None:intergenic |
| GCGCAATGGTGCAGACTATG+CGG | 0.731569 | 3_1:-72173418 | Msa0373160:CDS |
| CAGATGAGGCTGTTTCATGG+GGG | 0.740121 | 3_1:-72173344 | Msa0373160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTAATTTTTGTAATGA+AGG | + | chr3_1:72174505-72174524 | None:intergenic | 10.0% |
| !! | ATTTATATAAACAACTAAAT+CGG | + | chr3_1:72175086-72175105 | None:intergenic | 10.0% |
| !! | TTAGTTGTTTATATAAATAT+TGG | - | chr3_1:72175088-72175107 | Msa0373160:intron | 10.0% |
| !! | AATCATATAACTAAAATAAT+TGG | - | chr3_1:72176640-72176659 | Msa0373160:intron | 10.0% |
| !! | ATATATAAAAACAAAGAGAT+GGG | + | chr3_1:72173209-72173228 | None:intergenic | 15.0% |
| !! | AATATATAAAAACAAAGAGA+TGG | + | chr3_1:72173210-72173229 | None:intergenic | 15.0% |
| !! | TTCAACATTTGATTAAAAAT+AGG | + | chr3_1:72174446-72174465 | None:intergenic | 15.0% |
| !!! | TATTTTTAATCAAATGTTGA+AGG | - | chr3_1:72174445-72174464 | Msa0373160:intron | 15.0% |
| !!! | ACAATAAATCAAAACTTTTA+TGG | + | chr3_1:72174790-72174809 | None:intergenic | 15.0% |
| !! | TGTTTATATAAATATTGGTA+TGG | - | chr3_1:72175093-72175112 | Msa0373160:intron | 15.0% |
| !!! | TTCTTCATTTCTTTTTTAAA+AGG | + | chr3_1:72175679-72175698 | None:intergenic | 15.0% |
| !! | TCTAATTCTAATGAAAAAAA+AGG | + | chr3_1:72175735-72175754 | None:intergenic | 15.0% |
| !! | ATATATTGTTTAATTACTAC+CGG | - | chr3_1:72175901-72175920 | Msa0373160:CDS | 15.0% |
| !! | AAAAAAAAAAACTTCATATG+AGG | + | chr3_1:72176084-72176103 | None:intergenic | 15.0% |
| !!! | TAAAAAAGACATAGTTTTAA+GGG | + | chr3_1:72176980-72176999 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGACATAGTTTTA+AGG | + | chr3_1:72176981-72177000 | None:intergenic | 15.0% |
| !! | ACTAAAAAATTACTTCTAAA+TGG | + | chr3_1:72177331-72177350 | None:intergenic | 15.0% |
| !! | TTTGTTAATAAGAAGAATGA+AGG | + | chr3_1:72172794-72172813 | None:intergenic | 20.0% |
| !! | TCATTCTTCTTATTAACAAA+CGG | - | chr3_1:72172794-72172813 | Msa0373160:three_prime_UTR | 20.0% |
| !!! | TTTTTTTCTTTGTGTCTTTT+TGG | - | chr3_1:72173251-72173270 | Msa0373160:intron | 20.0% |
| !! | TATTAGAAGATAATCTCAAA+TGG | - | chr3_1:72173544-72173563 | Msa0373160:intron | 20.0% |
| !! | ATTAGAAGATAATCTCAAAT+GGG | - | chr3_1:72173545-72173564 | Msa0373160:intron | 20.0% |
| !!! | TATACATGTATAAAGGTATA+TGG | - | chr3_1:72173990-72174009 | Msa0373160:CDS | 20.0% |
| !!! | ATACATGTATAAAGGTATAT+GGG | - | chr3_1:72173991-72174010 | Msa0373160:CDS | 20.0% |
| !! | TAGTAAAAGGAAATTGTAAT+AGG | + | chr3_1:72174097-72174116 | None:intergenic | 20.0% |
| !! | CTTCAAATATATCTAGTAAA+AGG | + | chr3_1:72174110-72174129 | None:intergenic | 20.0% |
| !!! | ATATGATTAAGTTTTTGTGA+AGG | - | chr3_1:72174522-72174541 | Msa0373160:intron | 20.0% |
| !! | ACCTTGAAAATCTTAATTTA+TGG | - | chr3_1:72174701-72174720 | Msa0373160:intron | 20.0% |
| !!! | ACCATAAATTAAGATTTTCA+AGG | + | chr3_1:72174705-72174724 | None:intergenic | 20.0% |
| !! | AATTATGAACAAATGACTTA+TGG | - | chr3_1:72174912-72174931 | Msa0373160:intron | 20.0% |
| !! | GCAAAATTATTATTGAAATC+TGG | + | chr3_1:72175652-72175671 | None:intergenic | 20.0% |
| !!! | TGTAACATTTGTATTTTGTT+TGG | - | chr3_1:72175814-72175833 | Msa0373160:CDS | 20.0% |
| !! | AAACCAAGGTTAATTAAAAT+TGG | + | chr3_1:72175987-72176006 | None:intergenic | 20.0% |
| !!! | TAATACCATTGATGTTTTTT+TGG | - | chr3_1:72176446-72176465 | Msa0373160:intron | 20.0% |
| !! | GAAAAGTTTATCAACTATTA+CGG | - | chr3_1:72177479-72177498 | Msa0373160:five_prime_UTR | 20.0% |
| ! | CATTTGATTAACGACTTTAA+CGG | + | chr3_1:72173179-72173198 | None:intergenic | 25.0% |
| !!! | TGTTACATGTAAAGTGTTTT+TGG | - | chr3_1:72173370-72173389 | Msa0373160:CDS | 25.0% |
| !!! | GTTACATGTAAAGTGTTTTT+GGG | - | chr3_1:72173371-72173390 | Msa0373160:CDS | 25.0% |
| ! | TTAGAAGATAATCTCAAATG+GGG | - | chr3_1:72173546-72173565 | Msa0373160:intron | 25.0% |
| ! | AATTTATGCAATATCAAGTC+AGG | - | chr3_1:72173601-72173620 | Msa0373160:intron | 25.0% |
| ! | ATTTATGCAATATCAAGTCA+GGG | - | chr3_1:72173602-72173621 | Msa0373160:intron | 25.0% |
| !! | TTTCAACTTTTTGCACATTA+AGG | + | chr3_1:72173654-72173673 | None:intergenic | 25.0% |
| ! | AGCAACATATAAGAAATTCA+AGG | + | chr3_1:72173811-72173830 | None:intergenic | 25.0% |
| ! | GGTAGTATATACATGTATAA+AGG | - | chr3_1:72173983-72174002 | Msa0373160:CDS | 25.0% |
| ! | TTGACCTAATATACTATACT+TGG | + | chr3_1:72174047-72174066 | None:intergenic | 25.0% |
| ! | ATTTGCAATAGTTGTCATTA+GGG | + | chr3_1:72174406-72174425 | None:intergenic | 25.0% |
| ! | AATTTGCAATAGTTGTCATT+AGG | + | chr3_1:72174407-72174426 | None:intergenic | 25.0% |
| !!! | ATTTTCAAGGTGATGATAAA+AGG | + | chr3_1:72174692-72174711 | None:intergenic | 25.0% |
| !! | TTCTCTCTTTTAAACAATGT+TGG | - | chr3_1:72174827-72174846 | Msa0373160:intron | 25.0% |
| ! | AGTATCCACATAATAATAGT+TGG | - | chr3_1:72174966-72174985 | Msa0373160:intron | 25.0% |
| ! | GTATCCACATAATAATAGTT+GGG | - | chr3_1:72174967-72174986 | Msa0373160:intron | 25.0% |
| !! | ATGTTTTGTGTGTTAATAGT+AGG | - | chr3_1:72175245-72175264 | Msa0373160:intron | 25.0% |
| ! | TATACATTATGTTCTTGTTG+AGG | - | chr3_1:72175484-72175503 | Msa0373160:intron | 25.0% |
| ! | AAGGTTAATTAAAATTGGAC+TGG | + | chr3_1:72175982-72176001 | None:intergenic | 25.0% |
| !!! | AGTCCAATTTTAATTAACCT+TGG | - | chr3_1:72175981-72176000 | Msa0373160:intron | 25.0% |
| ! | AAACACCAAAAAAACATCAA+TGG | + | chr3_1:72176454-72176473 | None:intergenic | 25.0% |
| !! | ATGGATGATTTTGAATCAAT+TGG | - | chr3_1:72176617-72176636 | Msa0373160:intron | 25.0% |
| ! | TTCTGTAAAGAAAACAAGTA+GGG | + | chr3_1:72176931-72176950 | None:intergenic | 25.0% |
| ! | ATTCTGTAAAGAAAACAAGT+AGG | + | chr3_1:72176932-72176951 | None:intergenic | 25.0% |
| !!! | CTTTTTTATTTCACTAAACC+AGG | - | chr3_1:72176992-72177011 | Msa0373160:intron | 25.0% |
| ! | ACAGTCAAATTAAATGTCAA+TGG | + | chr3_1:72177270-72177289 | None:intergenic | 25.0% |
| !!! | AAGTAATTTTTTAGTCCTGA+AGG | - | chr3_1:72177336-72177355 | Msa0373160:five_prime_UTR | 25.0% |
| ! | ACGGTTTCAAAAAATATAGT+TGG | + | chr3_1:72177401-72177420 | None:intergenic | 25.0% |
| GTTAATAAGAAGAATGAAGG+AGG | + | chr3_1:72172791-72172810 | None:intergenic | 30.0% | |
| CGTTAAAGTCGTTAATCAAA+TGG | - | chr3_1:72173177-72173196 | Msa0373160:CDS | 30.0% | |
| !!! | TTTGTGTCTTTTTGGAACAT+GGG | - | chr3_1:72173259-72173278 | Msa0373160:intron | 30.0% |
| TGATGAAGATAAGAAGGATT+TGG | - | chr3_1:72173334-72173353 | Msa0373160:CDS | 30.0% | |
| !! | ATAAGAAGGATTTGGTGTAT+AGG | - | chr3_1:72173342-72173361 | Msa0373160:CDS | 30.0% |
| ACTTCTAATCTTATCTCTTC+TGG | - | chr3_1:72173398-72173417 | Msa0373160:CDS | 30.0% | |
| ! | TTGTTTGAATCAGATTTTCC+TGG | - | chr3_1:72173491-72173510 | Msa0373160:CDS | 30.0% |
| ! | TTCCTGGTTCTTATTGAATA+TGG | - | chr3_1:72173507-72173526 | Msa0373160:CDS | 30.0% |
| TTCCATATTCAATAAGAACC+AGG | + | chr3_1:72173512-72173531 | None:intergenic | 30.0% | |
| TTTATGCAATATCAAGTCAG+GGG | - | chr3_1:72173603-72173622 | Msa0373160:intron | 30.0% | |
| ! | GGTTAGTTATGTAGTGAAAA+TGG | - | chr3_1:72173625-72173644 | Msa0373160:intron | 30.0% |
| ! | TTATATGTTGCTTGTCACTT+AGG | - | chr3_1:72173819-72173838 | Msa0373160:intron | 30.0% |
| ! | TATATGTTGCTTGTCACTTA+GGG | - | chr3_1:72173820-72173839 | Msa0373160:intron | 30.0% |
| TCATCACTACAAAAATCAGT+GGG | + | chr3_1:72173884-72173903 | None:intergenic | 30.0% | |
| TTCATCACTACAAAAATCAG+TGG | + | chr3_1:72173885-72173904 | None:intergenic | 30.0% | |
| TACGCCAAGTATAGTATATT+AGG | - | chr3_1:72174040-72174059 | Msa0373160:CDS | 30.0% | |
| CTAGATATATTTGAAGATCC+TGG | - | chr3_1:72174114-72174133 | Msa0373160:intron | 30.0% | |
| ATATATTTGAAGATCCTGGT+GGG | - | chr3_1:72174118-72174137 | Msa0373160:intron | 30.0% | |
| CACAACATTACAAAAACACT+TGG | + | chr3_1:72174196-72174215 | None:intergenic | 30.0% | |
| TTGTAATGTTGTGAATGACA+TGG | - | chr3_1:72174203-72174222 | Msa0373160:intron | 30.0% | |
| GAGAAATCTCCTTTATATGT+TGG | + | chr3_1:72174326-72174345 | None:intergenic | 30.0% | |
| TCAAAAGGATTGAATCGAAT+CGG | - | chr3_1:72174368-72174387 | Msa0373160:intron | 30.0% | |
| GAATCGAATCGGTAATTTAT+TGG | - | chr3_1:72174379-72174398 | Msa0373160:intron | 30.0% | |
| TGACAACTATTGCAAATTTG+AGG | - | chr3_1:72174409-72174428 | Msa0373160:intron | 30.0% | |
| TTTGTGAAGGTAATCAAAAC+CGG | - | chr3_1:72174535-72174554 | Msa0373160:intron | 30.0% | |
| TATTGCTTAAAGGAGATAAC+TGG | + | chr3_1:72174741-72174760 | None:intergenic | 30.0% | |
| GTTATCTCCTTTAAGCAATA+TGG | - | chr3_1:72174741-72174760 | Msa0373160:intron | 30.0% | |
| TGAAGTTCCATATTGCTTAA+AGG | + | chr3_1:72174751-72174770 | None:intergenic | 30.0% | |
| GTTTAAAAGAGAGAACTAGT+AGG | + | chr3_1:72174822-72174841 | None:intergenic | 30.0% | |
| AAAGTAAATAGTACATCTGC+AGG | - | chr3_1:72174857-72174876 | Msa0373160:intron | 30.0% | |
| ! | GTATATAAGGTTTTCGTTGT+GGG | - | chr3_1:72175132-72175151 | Msa0373160:intron | 30.0% |
| ! | TATATAAGGTTTTCGTTGTG+GGG | - | chr3_1:72175133-72175152 | Msa0373160:intron | 30.0% |
| AGAGATCAAACTATGTTGTA+TGG | - | chr3_1:72175309-72175328 | Msa0373160:intron | 30.0% | |
| ! | TATCTGAAAAATGATGATGC+AGG | - | chr3_1:72175352-72175371 | Msa0373160:intron | 30.0% |
| ! | TAAGTAGTGCATGTTTGTTA+AGG | - | chr3_1:72175416-72175435 | Msa0373160:intron | 30.0% |
| !!! | AGTGTTCACTTGCTATATTT+TGG | - | chr3_1:72175442-72175461 | Msa0373160:intron | 30.0% |
| !!! | TTCACTTGCTATATTTTGGT+AGG | - | chr3_1:72175446-72175465 | Msa0373160:intron | 30.0% |
| !!! | TCACTTGCTATATTTTGGTA+GGG | - | chr3_1:72175447-72175466 | Msa0373160:intron | 30.0% |
| CTCAAGGCAATATAATAACA+TGG | + | chr3_1:72175579-72175598 | None:intergenic | 30.0% | |
| ! | TATTGCCTTGAGATATTTTG+TGG | - | chr3_1:72175587-72175606 | Msa0373160:intron | 30.0% |
| CAAATCCACAAAATATCTCA+AGG | + | chr3_1:72175595-72175614 | None:intergenic | 30.0% | |
| ! | GATATTTTGTGGATTTGTGA+TGG | - | chr3_1:72175598-72175617 | Msa0373160:intron | 30.0% |
| !!! | ACTTCATCATCTTCCTTTTT+TGG | - | chr3_1:72176133-72176152 | Msa0373160:intron | 30.0% |
| AATATTCCAGTTTATTGTCC+AGG | - | chr3_1:72176482-72176501 | Msa0373160:intron | 30.0% | |
| ! | TCATTTTACTCTTTACTGCA+TGG | - | chr3_1:72176598-72176617 | Msa0373160:intron | 30.0% |
| TTGGCAATACAACAGATATA+AGG | - | chr3_1:72176659-72176678 | Msa0373160:intron | 30.0% | |
| TGGCAATACAACAGATATAA+GGG | - | chr3_1:72176660-72176679 | Msa0373160:intron | 30.0% | |
| ! | AAGACAGGCATGATTATTTT+AGG | - | chr3_1:72176718-72176737 | Msa0373160:intron | 30.0% |
| AATACTGCACAAGAATTTGA+TGG | - | chr3_1:72176814-72176833 | Msa0373160:CDS | 30.0% | |
| ! | AACAAGTAGGGAAAGTATAT+AGG | + | chr3_1:72176919-72176938 | None:intergenic | 30.0% |
| GATATAGTACAGCAAAAGTT+TGG | + | chr3_1:72176958-72176977 | None:intergenic | 30.0% | |
| CGAAACTTCTTCATTGATAA+AGG | - | chr3_1:72177075-72177094 | Msa0373160:CDS | 30.0% | |
| AAGTTCCATACCAAAACATT+TGG | + | chr3_1:72177162-72177181 | None:intergenic | 30.0% | |
| ATTAAATGTCAATGGCAAAC+TGG | + | chr3_1:72177262-72177281 | None:intergenic | 30.0% | |
| !! | GGTAAAAAATGCTTGTTATG+TGG | + | chr3_1:72177310-72177329 | None:intergenic | 30.0% |
| ! | GAATTGAGAGTCATGAATTT+TGG | - | chr3_1:72177358-72177377 | Msa0373160:five_prime_UTR | 30.0% |
| !!! | CTATATTTTTTGAAACCGTG+TGG | - | chr3_1:72177402-72177421 | Msa0373160:five_prime_UTR | 30.0% |
| !! | TTTTTAGAGATGACTGTGCA+AGG | + | chr3_1:72172715-72172734 | None:intergenic | 35.0% |
| AAATCTCTCAAACCTTCTTC+TGG | - | chr3_1:72172746-72172765 | Msa0373160:three_prime_UTR | 35.0% | |
| CTTCTTATTAACAAACGGTC+TGG | - | chr3_1:72172799-72172818 | Msa0373160:three_prime_UTR | 35.0% | |
| ! | GTTTTTGTCTTGAGTCATTG+AGG | - | chr3_1:72172900-72172919 | Msa0373160:three_prime_UTR | 35.0% |
| ! | TTCAGATTCTTTGAAGACTG+TGG | + | chr3_1:72173038-72173057 | None:intergenic | 35.0% |
| TGAAATCATAACCCTCGATT+TGG | + | chr3_1:72173081-72173100 | None:intergenic | 35.0% | |
| !!! | CTTTGTGTCTTTTTGGAACA+TGG | - | chr3_1:72173258-72173277 | Msa0373160:intron | 35.0% |
| TCATCACAATCCTCATCAAT+AGG | + | chr3_1:72173320-72173339 | None:intergenic | 35.0% | |
| GGATTGTGATGAAGATAAGA+AGG | - | chr3_1:72173328-72173347 | Msa0373160:CDS | 35.0% | |
| TTATGCAATATCAAGTCAGG+GGG | - | chr3_1:72173604-72173623 | Msa0373160:intron | 35.0% | |
| TGCAAATCATTGAGCAAACA+CGG | + | chr3_1:72173715-72173734 | None:intergenic | 35.0% | |
| ! | TGTTTGCTCAATGATTTGCA+TGG | - | chr3_1:72173715-72173734 | Msa0373160:CDS | 35.0% |
| CAAGAATATGCATGACTATG+AGG | - | chr3_1:72173962-72173981 | Msa0373160:CDS | 35.0% | |
| ! | GTATAAAGGTATATGGGTGA+TGG | - | chr3_1:72173997-72174016 | Msa0373160:CDS | 35.0% |
| CATGAAAAGCTTGTAATGTG+AGG | - | chr3_1:72174068-72174087 | Msa0373160:intron | 35.0% | |
| GATATATTTGAAGATCCTGG+TGG | - | chr3_1:72174117-72174136 | Msa0373160:intron | 35.0% | |
| ! | TTTTCTTGCATCTGTTCTAC+AGG | - | chr3_1:72174241-72174260 | Msa0373160:intron | 35.0% |
| CATGTAGTTGTTACAACTAC+AGG | - | chr3_1:72174266-72174285 | Msa0373160:intron | 35.0% | |
| ACTATTGCAAATTTGAGGAC+TGG | - | chr3_1:72174414-72174433 | Msa0373160:intron | 35.0% | |
| TCAAATGTTGAAGGAGCAAA+AGG | - | chr3_1:72174454-72174473 | Msa0373160:intron | 35.0% | |
| AAATAGTACATCTGCAGGAA+AGG | - | chr3_1:72174862-72174881 | Msa0373160:intron | 35.0% | |
| GGTGATACATTTAGACACTA+AGG | - | chr3_1:72174992-72175011 | Msa0373160:intron | 35.0% | |
| TACATTTAGACACTAAGGTG+TGG | - | chr3_1:72174997-72175016 | Msa0373160:intron | 35.0% | |
| GTTGGAAGTGAAGAGATATA+CGG | - | chr3_1:72175019-72175038 | Msa0373160:intron | 35.0% | |
| TATTGGTATGGAAACAATGC+TGG | - | chr3_1:72175105-72175124 | Msa0373160:intron | 35.0% | |
| ! | GGTATATAAGGTTTTCGTTG+TGG | - | chr3_1:72175131-72175150 | Msa0373160:intron | 35.0% |
| ! | AATTGATTCCAATGACACCA+TGG | - | chr3_1:72175278-72175297 | Msa0373160:intron | 35.0% |
| CGGTATTTGTATAGTGTGAT+TGG | - | chr3_1:72175379-72175398 | Msa0373160:intron | 35.0% | |
| ATTATGTTCTTGTTGAGGTG+TGG | - | chr3_1:72175489-72175508 | Msa0373160:intron | 35.0% | |
| ACAACACATTCTGCCAAAAA+AGG | + | chr3_1:72176149-72176168 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGCAGAATGTGTTG+TGG | - | chr3_1:72176148-72176167 | Msa0373160:intron | 35.0% |
| ! | AATCGAGCTATTAACTTGGA+TGG | + | chr3_1:72176177-72176196 | None:intergenic | 35.0% |
| ATCCAAGTTAATAGCTCGAT+TGG | - | chr3_1:72176176-72176195 | Msa0373160:intron | 35.0% | |
| TCCAAGTTAATAGCTCGATT+GGG | - | chr3_1:72176177-72176196 | Msa0373160:intron | 35.0% | |
| ATGAAAACTCCTACCTTTAC+TGG | - | chr3_1:72176214-72176233 | Msa0373160:intron | 35.0% | |
| TGAAAACTCCTACCTTTACT+GGG | - | chr3_1:72176215-72176234 | Msa0373160:intron | 35.0% | |
| GGAAATTAACAGCATAACGA+TGG | + | chr3_1:72176335-72176354 | None:intergenic | 35.0% | |
| ATTCTGTATGCAGGATATCT+AGG | + | chr3_1:72176356-72176375 | None:intergenic | 35.0% | |
| GTTAATCCTGGACAATAAAC+TGG | + | chr3_1:72176491-72176510 | None:intergenic | 35.0% | |
| TATTGTCCAGGATTAACTGA+TGG | - | chr3_1:72176494-72176513 | Msa0373160:intron | 35.0% | |
| !!! | ACAGGCATGATTATTTTAGG+AGG | - | chr3_1:72176721-72176740 | Msa0373160:intron | 35.0% |
| !! | TGCAAATGTGATGTTTTGGA+AGG | + | chr3_1:72176750-72176769 | None:intergenic | 35.0% |
| GAATTTGATGGAAGTGATTC+TGG | - | chr3_1:72176826-72176845 | Msa0373160:CDS | 35.0% | |
| AGGATCTGCTAAAACTGTTA+AGG | - | chr3_1:72176888-72176907 | Msa0373160:CDS | 35.0% | |
| ATGAAGAAGTTTCGTTCTTG+AGG | + | chr3_1:72177069-72177088 | None:intergenic | 35.0% | |
| !! | GGTTTGCTGTCAAAAGTAAA+AGG | - | chr3_1:72177096-72177115 | Msa0373160:CDS | 35.0% |
| !! | TGACTGTCTTGTTATTTGCA+AGG | - | chr3_1:72177283-72177302 | Msa0373160:five_prime_UTR | 35.0% |
| CAAAACTAAGAGAAACCACA+CGG | + | chr3_1:72177420-72177439 | None:intergenic | 35.0% | |
| !!! | TGTGGTTTCTCTTAGTTTTG+AGG | - | chr3_1:72177420-72177439 | Msa0373160:five_prime_UTR | 35.0% |
| TGTGAAATACAGCAATCAGT+TGG | + | chr3_1:72177531-72177550 | None:intergenic | 35.0% | |
| ACTGATTGCTGTATTTCACA+TGG | - | chr3_1:72177531-72177550 | Msa0373160:five_prime_UTR | 35.0% | |
| CTGATTGCTGTATTTCACAT+GGG | - | chr3_1:72177532-72177551 | Msa0373160:five_prime_UTR | 35.0% | |
| AGAATGAAGGAGGTAGTGAA+TGG | + | chr3_1:72172781-72172800 | None:intergenic | 40.0% | |
| TTATTAACAAACGGTCTGGC+CGG | - | chr3_1:72172803-72172822 | Msa0373160:three_prime_UTR | 40.0% | |
| GAAACAAAAGCGGTTCAAAC+CGG | + | chr3_1:72172870-72172889 | None:intergenic | 40.0% | |
| ACTCAAGACAAAAACTCCAC+GGG | + | chr3_1:72172895-72172914 | None:intergenic | 40.0% | |
| GACTCAAGACAAAAACTCCA+CGG | + | chr3_1:72172896-72172915 | None:intergenic | 40.0% | |
| AAAGAATCTGAAAACCTCGC+AGG | - | chr3_1:72173046-72173065 | Msa0373160:three_prime_UTR | 40.0% | |
| CTCAAATCAATGCTCACAAC+TGG | - | chr3_1:72173127-72173146 | Msa0373160:exon | 40.0% | |
| !! | GGTTTTCAAGCTTCCAACTT+TGG | - | chr3_1:72173148-72173167 | Msa0373160:CDS | 40.0% |
| TTTAACGGCATCACCAAAGT+TGG | + | chr3_1:72173164-72173183 | None:intergenic | 40.0% | |
| !! | GGTTGATGAACCTATTGATG+AGG | - | chr3_1:72173307-72173326 | Msa0373160:intron | 40.0% |
| TTACCTTTGTCAGCATCACA+TGG | - | chr3_1:72173439-72173458 | Msa0373160:CDS | 40.0% | |
| ! | TGATGGTTCCTTGTTAGCTT+TGG | - | chr3_1:72174014-72174033 | Msa0373160:CDS | 40.0% |
| GCGTAATACCAAAGCTAACA+AGG | + | chr3_1:72174025-72174044 | None:intergenic | 40.0% | |
| GTAGTTGTTACAACTACAGG+TGG | - | chr3_1:72174269-72174288 | Msa0373160:intron | 40.0% | |
| AAAGGAGATTTCTCTTTGCC+TGG | - | chr3_1:72174332-72174351 | Msa0373160:intron | 40.0% | |
| TGAAGGTAATCAAAACCGGA+TGG | - | chr3_1:72174539-72174558 | Msa0373160:intron | 40.0% | |
| ATCTGCAGGAAAGGAATTAC+CGG | - | chr3_1:72174871-72174890 | Msa0373160:intron | 40.0% | |
| AATGACTTATGGTTGCTACC+TGG | - | chr3_1:72174923-72174942 | Msa0373160:intron | 40.0% | |
| CCAGCCCAACTATTATTATG+TGG | + | chr3_1:72174974-72174993 | None:intergenic | 40.0% | |
| CCACATAATAATAGTTGGGC+TGG | - | chr3_1:72174971-72174990 | Msa0373160:intron | 40.0% | |
| TTTAGACACTAAGGTGTGGT+TGG | - | chr3_1:72175001-72175020 | Msa0373160:intron | 40.0% | |
| TGAAGAGATATACGGCTATC+TGG | - | chr3_1:72175027-72175046 | Msa0373160:intron | 40.0% | |
| AGGAAATAGCTTCTACAGGT+TGG | - | chr3_1:72175051-72175070 | Msa0373160:intron | 40.0% | |
| !! | AATAGCTTCTACAGGTTGGT+CGG | - | chr3_1:72175055-72175074 | Msa0373160:intron | 40.0% |
| ! | CAATGCTGGAGAGGTATATA+AGG | - | chr3_1:72175119-72175138 | Msa0373160:intron | 40.0% |
| TGTTGTATGGTGTTTAGCAG+TGG | - | chr3_1:72175322-72175341 | Msa0373160:intron | 40.0% | |
| GTTGTATGGTGTTTAGCAGT+GGG | - | chr3_1:72175323-72175342 | Msa0373160:intron | 40.0% | |
| TTGTATGGTGTTTAGCAGTG+GGG | - | chr3_1:72175324-72175343 | Msa0373160:intron | 40.0% | |
| ! | AAAATGATGATGCAGGCTAG+CGG | - | chr3_1:72175359-72175378 | Msa0373160:intron | 40.0% |
| GAGGTGTGGTTTCTAATAAC+TGG | - | chr3_1:72175503-72175522 | Msa0373160:intron | 40.0% | |
| ! | GATTTTACTCCTGACAGTTC+TGG | - | chr3_1:72175530-72175549 | Msa0373160:intron | 40.0% |
| ATAACATGGTTCAGTTGAGC+CGG | + | chr3_1:72175565-72175584 | None:intergenic | 40.0% | |
| AAGGAAGATGATGAAGTGAC+AGG | + | chr3_1:72176130-72176149 | None:intergenic | 40.0% | |
| TCCCAATCGAGCTATTAACT+TGG | + | chr3_1:72176181-72176200 | None:intergenic | 40.0% | |
| AATGAGCCATCAGTTAATCC+TGG | + | chr3_1:72176503-72176522 | None:intergenic | 40.0% | |
| AGGATTAACTGATGGCTCAT+TGG | - | chr3_1:72176502-72176521 | Msa0373160:intron | 40.0% | |
| GGATTAACTGATGGCTCATT+GGG | - | chr3_1:72176503-72176522 | Msa0373160:intron | 40.0% | |
| ACAGATATAAGGGCCATGAA+TGG | - | chr3_1:72176670-72176689 | Msa0373160:intron | 40.0% | |
| ATGTACAGCTTCACCATTCA+TGG | + | chr3_1:72176686-72176705 | None:intergenic | 40.0% | |
| ATAATCATGCCTGTCTTGCT+AGG | + | chr3_1:72176715-72176734 | None:intergenic | 40.0% | |
| !!! | GGCATGATTATTTTAGGAGG+CGG | - | chr3_1:72176724-72176743 | Msa0373160:intron | 40.0% |
| ! | GCGTTGCAAATGTGATGTTT+TGG | + | chr3_1:72176754-72176773 | None:intergenic | 40.0% |
| GCTGTCAAAAGTAAAAGGTG+TGG | - | chr3_1:72177101-72177120 | Msa0373160:CDS | 40.0% | |
| ! | TCAAAAGTAAAAGGTGTGGC+TGG | - | chr3_1:72177105-72177124 | Msa0373160:CDS | 40.0% |
| ! | CAAAAGTAAAAGGTGTGGCT+GGG | - | chr3_1:72177106-72177125 | Msa0373160:CDS | 40.0% |
| AAAACATTTGGCACTCACTG+TGG | + | chr3_1:72177150-72177169 | None:intergenic | 40.0% | |
| ! | ACAGTGAGTGCCAAATGTTT+TGG | - | chr3_1:72177149-72177168 | Msa0373160:CDS | 40.0% |
| !!! | GAGTGCCAAATGTTTTGGTA+TGG | - | chr3_1:72177154-72177173 | Msa0373160:CDS | 40.0% |
| GGTATGGAACTTAAAGACCA+AGG | - | chr3_1:72177170-72177189 | Msa0373160:CDS | 40.0% | |
| TGGAACTTAAAGACCAAGGT+CGG | - | chr3_1:72177174-72177193 | Msa0373160:CDS | 40.0% | |
| ! | ATGCAGTGTGTTTGAGATCT+TGG | - | chr3_1:72177232-72177251 | Msa0373160:exon | 40.0% |
| TCATGACTCTCAATTCCTTC+AGG | + | chr3_1:72177354-72177373 | None:intergenic | 40.0% | |
| CTGTGCAAGGAATTGGAGAA+GGG | + | chr3_1:72172702-72172721 | None:intergenic | 45.0% | |
| ACTGTGCAAGGAATTGGAGA+AGG | + | chr3_1:72172703-72172722 | None:intergenic | 45.0% | |
| GAGATGACTGTGCAAGGAAT+TGG | + | chr3_1:72172709-72172728 | None:intergenic | 45.0% | |
| ! | TCCACGGGTTGAAACAAAAG+CGG | + | chr3_1:72172880-72172899 | None:intergenic | 45.0% |
| !! | AGGAAAGTGTCTCCAAATCG+AGG | - | chr3_1:72173066-72173085 | Msa0373160:three_prime_UTR | 45.0% |
| !! | GGAAAGTGTCTCCAAATCGA+GGG | - | chr3_1:72173067-72173086 | Msa0373160:three_prime_UTR | 45.0% |
| GAGGGTTATGATTTCAACCG+TGG | - | chr3_1:72173085-72173104 | Msa0373160:three_prime_UTR | 45.0% | |
| TTGCGTTGAAGCTAGATTGG+AGG | - | chr3_1:72173282-72173301 | Msa0373160:intron | 45.0% | |
| GTTGAAGCTAGATTGGAGGT+TGG | - | chr3_1:72173286-72173305 | Msa0373160:intron | 45.0% | |
| TCACCATGTGATGCTGACAA+AGG | + | chr3_1:72173445-72173464 | None:intergenic | 45.0% | |
| ! | GCTCAATGATTTGCATGGCT+TGG | - | chr3_1:72173720-72173739 | Msa0373160:CDS | 45.0% |
| AGTCGCTTGGCAATTAAGCA+TGG | + | chr3_1:72173767-72173786 | None:intergenic | 45.0% | |
| ATAGCTTCATCAAACCCACC+AGG | + | chr3_1:72174135-72174154 | None:intergenic | 45.0% | |
| TGCCTTGCGCCAACATATAA+AGG | - | chr3_1:72174314-72174333 | Msa0373160:intron | 45.0% | |
| CTCCTTTATATGTTGGCGCA+AGG | + | chr3_1:72174319-72174338 | None:intergenic | 45.0% | |
| TTTGAGCGAAGATAAGCTCC+AGG | + | chr3_1:72174353-72174372 | None:intergenic | 45.0% | |
| GGAGCTTATCTTCGCTCAAA+AGG | - | chr3_1:72174353-72174372 | Msa0373160:intron | 45.0% | |
| GTTGAAGGAGCAAAAGGAAG+AGG | - | chr3_1:72174460-72174479 | Msa0373160:intron | 45.0% | |
| TCAAAACCGGATGGTTTGAC+CGG | - | chr3_1:72174548-72174567 | Msa0373160:intron | 45.0% | |
| TTTACTCAACCTTTCTCCGC+CGG | + | chr3_1:72174893-72174912 | None:intergenic | 45.0% | |
| TGGCAGGAAATAGCTTCTAC+AGG | - | chr3_1:72175047-72175066 | Msa0373160:intron | 45.0% | |
| GTATGGAAACAATGCTGGAG+AGG | - | chr3_1:72175110-72175129 | Msa0373160:intron | 45.0% | |
| TTGATCTCTCCTCAGTACCA+TGG | + | chr3_1:72175298-72175317 | None:intergenic | 45.0% | |
| AATTACTACCGGTCCATCCT+CGG | - | chr3_1:72175912-72175931 | Msa0373160:CDS | 45.0% | |
| TTTAATGGTCTGACCGAGGA+TGG | + | chr3_1:72175928-72175947 | None:intergenic | 45.0% | |
| AAGGTTTAATGGTCTGACCG+AGG | + | chr3_1:72175932-72175951 | None:intergenic | 45.0% | |
| !! | GTCGCTGGTTCAAGGTTTAA+TGG | + | chr3_1:72175943-72175962 | None:intergenic | 45.0% |
| CATTGAATCACTGTAGTCGC+TGG | + | chr3_1:72175958-72175977 | None:intergenic | 45.0% | |
| CCAGGCAACAACAAAAACCA+AGG | + | chr3_1:72176001-72176020 | None:intergenic | 45.0% | |
| !!! | CCTTGGTTTTTGTTGTTGCC+TGG | - | chr3_1:72175998-72176017 | Msa0373160:intron | 45.0% |
| TGAGCACTAAATGTGACTCC+AGG | + | chr3_1:72176019-72176038 | None:intergenic | 45.0% | |
| CTTGTATGCCCAGTAAAGGT+AGG | + | chr3_1:72176226-72176245 | None:intergenic | 45.0% | |
| CTACCTTTACTGGGCATACA+AGG | - | chr3_1:72176224-72176243 | Msa0373160:intron | 45.0% | |
| TTGCCTTGTATGCCCAGTAA+AGG | + | chr3_1:72176230-72176249 | None:intergenic | 45.0% | |
| CCATGTTGCATTCTGTATGC+AGG | + | chr3_1:72176365-72176384 | None:intergenic | 45.0% | |
| CCTGCATACAGAATGCAACA+TGG | - | chr3_1:72176362-72176381 | Msa0373160:intron | 45.0% | |
| TTCCATTCCTTCCAAAACCC+TGG | - | chr3_1:72176539-72176558 | Msa0373160:intron | 45.0% | |
| !!! | AATCAGACCAGGGTTTTGGA+AGG | + | chr3_1:72176549-72176568 | None:intergenic | 45.0% |
| CTATGTCCACAATCAGACCA+GGG | + | chr3_1:72176559-72176578 | None:intergenic | 45.0% | |
| ACTATGTCCACAATCAGACC+AGG | + | chr3_1:72176560-72176579 | None:intergenic | 45.0% | |
| CTGATTGTGGACATAGTGCA+AGG | - | chr3_1:72176563-72176582 | Msa0373160:intron | 45.0% | |
| AACGCCAATATGATGCGCAA+TGG | - | chr3_1:72176769-72176788 | Msa0373160:CDS | 45.0% | |
| TGCACCATTGCGCATCATAT+TGG | + | chr3_1:72176776-72176795 | None:intergenic | 45.0% | |
| ! | TCCAGATGAGGCTGTTTCAT+GGG | - | chr3_1:72176855-72176874 | Msa0373160:CDS | 45.0% |
| GTTTCATGGGGGAAAATACG+AGG | - | chr3_1:72176868-72176887 | Msa0373160:CDS | 45.0% | |
| TCGTTGCATCACAATGTACC+TGG | + | chr3_1:72177013-72177032 | None:intergenic | 45.0% | |
| ATGTTTCAGCAACCAGCAGA+GGG | + | chr3_1:72177043-72177062 | None:intergenic | 45.0% | |
| AATGTTTCAGCAACCAGCAG+AGG | + | chr3_1:72177044-72177063 | None:intergenic | 45.0% | |
| ! | CAGTGTGTTTGAGATCTTGG+TGG | - | chr3_1:72177235-72177254 | Msa0373160:exon | 45.0% |
| !!! | CATTTTTTTAATAAAAAAAA+AGG | + | chr3_1:72174631-72174650 | None:intergenic | 5.0% |
| !!! | AAATTAAAAAGTTATAATTT+TGG | - | chr3_1:72175754-72175773 | Msa0373160:CDS | 5.0% |
| !!! | AATTAAAAAGTTATAATTTT+GGG | - | chr3_1:72175755-72175774 | Msa0373160:CDS | 5.0% |
| ! | TGGCGATTTGCTCCAGAAGA+AGG | + | chr3_1:72172761-72172780 | None:intergenic | 50.0% |
| GAATCGGTGCAACTTGGATC+CGG | + | chr3_1:72172825-72172844 | None:intergenic | 50.0% | |
| GGCACAAAAGCGGTTCGAAT+CGG | + | chr3_1:72172841-72172860 | None:intergenic | 50.0% | |
| CCGGAATGATGGCACAAAAG+CGG | + | chr3_1:72172851-72172870 | None:intergenic | 50.0% | |
| !! | CCGCTTTTGTGCCATCATTC+CGG | - | chr3_1:72172848-72172867 | Msa0373160:three_prime_UTR | 50.0% |
| AGCGGTTCAAACCGGAATGA+TGG | + | chr3_1:72172862-72172881 | None:intergenic | 50.0% | |
| !! | ACCGCTTTTGTTTCAACCCG+TGG | - | chr3_1:72172876-72172895 | Msa0373160:three_prime_UTR | 50.0% |
| GAAGACTGTGGAGTGAACTG+AGG | + | chr3_1:72173026-72173045 | None:intergenic | 50.0% | |
| TTTGGAGACACTTTCCTGCG+AGG | + | chr3_1:72173063-72173082 | None:intergenic | 50.0% | |
| !! | GCTGTTGATAATCGACGCCA+CGG | + | chr3_1:72173105-72173124 | None:intergenic | 50.0% |
| GGGTTGCGTTGAAGCTAGAT+TGG | - | chr3_1:72173279-72173298 | Msa0373160:intron | 50.0% | |
| CAAAACCGGATGGTTTGACC+GGG | - | chr3_1:72174549-72174568 | Msa0373160:intron | 50.0% | |
| TGCAGGAAAGGAATTACCGG+CGG | - | chr3_1:72174874-72174893 | Msa0373160:intron | 50.0% | |
| AAGGAATTACCGGCGGAGAA+AGG | - | chr3_1:72174881-72174900 | Msa0373160:intron | 50.0% | |
| ACTTTCGACCACAGTCATCC+AGG | + | chr3_1:72174944-72174963 | None:intergenic | 50.0% | |
| GAGATATACGGCTATCTGGC+AGG | - | chr3_1:72175031-72175050 | Msa0373160:intron | 50.0% | |
| TCGTGGACCAGTGGTAGATT+TGG | - | chr3_1:72175163-72175182 | Msa0373160:intron | 50.0% | |
| ACCAGTGGTAGATTTGGCCT+TGG | - | chr3_1:72175169-72175188 | Msa0373160:intron | 50.0% | |
| CTGCAGCAGTCAAAATGCCA+AGG | + | chr3_1:72175189-72175208 | None:intergenic | 50.0% | |
| !!! | CTTGGCATTTTGACTGCTGC+AGG | - | chr3_1:72175187-72175206 | Msa0373160:intron | 50.0% |
| !! | CCTCAGTACCATGGTGTCAT+TGG | + | chr3_1:72175289-72175308 | None:intergenic | 50.0% |
| CCAATGACACCATGGTACTG+AGG | - | chr3_1:72175286-72175305 | Msa0373160:intron | 50.0% | |
| ! | ACTCCTGACAGTTCTGGTGA+TGG | - | chr3_1:72175536-72175555 | Msa0373160:intron | 50.0% |
| CTACCATCACCAGAACTGTC+AGG | + | chr3_1:72175542-72175561 | None:intergenic | 50.0% | |
| !! | ACAGTTCTGGTGATGGTAGC+CGG | - | chr3_1:72175543-72175562 | Msa0373160:intron | 50.0% |
| !! | TCACTGTAGTCGCTGGTTCA+AGG | + | chr3_1:72175951-72175970 | None:intergenic | 50.0% |
| !!! | GACCAGGGTTTTGGAAGGAA+TGG | + | chr3_1:72176544-72176563 | None:intergenic | 50.0% |
| ! | CCACAATCAGACCAGGGTTT+TGG | + | chr3_1:72176553-72176572 | None:intergenic | 50.0% |
| CCAAAACCCTGGTCTGATTG+TGG | - | chr3_1:72176550-72176569 | Msa0373160:intron | 50.0% | |
| CATGCAAGTCCTAGCAAGAC+AGG | - | chr3_1:72176703-72176722 | Msa0373160:intron | 50.0% | |
| ! | GTCCAGATGAGGCTGTTTCA+TGG | - | chr3_1:72176854-72176873 | Msa0373160:CDS | 50.0% |
| ! | CCAGATGAGGCTGTTTCATG+GGG | - | chr3_1:72176856-72176875 | Msa0373160:CDS | 50.0% |
| ! | CAGATGAGGCTGTTTCATGG+GGG | - | chr3_1:72176857-72176876 | Msa0373160:CDS | 50.0% |
| AACGATAGCATTCCCTCTGC+TGG | - | chr3_1:72177028-72177047 | Msa0373160:CDS | 50.0% | |
| GTATGACATACAGCCGACCT+TGG | + | chr3_1:72177190-72177209 | None:intergenic | 50.0% | |
| CGGTTCGAATCGGTGCAACT+TGG | + | chr3_1:72172831-72172850 | None:intergenic | 55.0% | |
| TTAGCGACACACGAGTCGCT+TGG | + | chr3_1:72173780-72173799 | None:intergenic | 55.0% | |
| TTCCAGACCGGACATAGGTC+CGG | + | chr3_1:72174577-72174596 | None:intergenic | 55.0% | |
| GAGTCTTCCAGACCGGACAT+AGG | + | chr3_1:72174582-72174601 | None:intergenic | 55.0% | |
| GTACTCGGAGTCTTCCAGAC+CGG | + | chr3_1:72174589-72174608 | None:intergenic | 55.0% | |
| TGGAAGACTCCGAGTACCAG+TGG | - | chr3_1:72174592-72174611 | Msa0373160:intron | 55.0% | |
| AACCTCGAGCCACTGGTACT+CGG | + | chr3_1:72174604-72174623 | None:intergenic | 55.0% | |
| AGGTCTAAACCTCGAGCCAC+TGG | + | chr3_1:72174611-72174630 | None:intergenic | 55.0% | |
| GGTTGCTACCTGGATGACTG+TGG | - | chr3_1:72174933-72174952 | Msa0373160:intron | 55.0% | |
| CGTTGTGGGGAAGTAGTTCG+TGG | - | chr3_1:72175146-72175165 | Msa0373160:intron | 55.0% | |
| GGAAGTAGTTCGTGGACCAG+TGG | - | chr3_1:72175154-72175173 | Msa0373160:intron | 55.0% | |
| GCCAAGGCCAAATCTACCAC+TGG | + | chr3_1:72175173-72175192 | None:intergenic | 55.0% | |
| GCGCAATGGTGCAGACTATG+CGG | - | chr3_1:72176783-72176802 | Msa0373160:CDS | 55.0% | |
| !! | TTCTGGAGCTCGTCCAGATG+AGG | - | chr3_1:72176843-72176862 | Msa0373160:CDS | 55.0% |
| CCCCATGAAACAGCCTCATC+TGG | + | chr3_1:72176859-72176878 | None:intergenic | 55.0% | |
| CGGTTCCCGGTCAAACCATC+CGG | + | chr3_1:72174557-72174576 | None:intergenic | 60.0% | |
| CGGATGGTTTGACCGGGAAC+CGG | - | chr3_1:72174555-72174574 | Msa0373160:intron | 60.0% | |
| AACCGGACCTATGTCCGGTC+TGG | - | chr3_1:72174572-72174591 | Msa0373160:intron | 60.0% | |
| TGGTCTGACCGAGGATGGAC+CGG | + | chr3_1:72175923-72175942 | None:intergenic | 60.0% | |
| TGGCACTCACTGTGGAGCTG+CGG | + | chr3_1:72177142-72177161 | None:intergenic | 60.0% | |
| CCGGACATAGGTCCGGTTCC+CGG | + | chr3_1:72174570-72174589 | None:intergenic | 65.0% | |
| CCGGGAACCGGACCTATGTC+CGG | - | chr3_1:72174567-72174586 | Msa0373160:intron | 65.0% | |
| CTCCGAGTACCAGTGGCTCG+AGG | - | chr3_1:72174599-72174618 | Msa0373160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72172649 | 72177574 | 72172649 | ID=Msa0373160;Name=Msa0373160 |
| chr3_1 | mRNA | 72172649 | 72177574 | 72172649 | ID=Msa0373160-mRNA-1;Parent=Msa0373160;Name=Msa0373160-mRNA-1;_AED=0.23;_eAED=0.23;_QI=334|0.83|0.85|1|1|1|7|483|415 |
| chr3_1 | exon | 72172649 | 72173209 | 72172649 | ID=Msa0373160-mRNA-1:exon:16014;Parent=Msa0373160-mRNA-1 |
| chr3_1 | exon | 72173314 | 72173549 | 72173314 | ID=Msa0373160-mRNA-1:exon:16013;Parent=Msa0373160-mRNA-1 |
| chr3_1 | exon | 72173639 | 72173744 | 72173639 | ID=Msa0373160-mRNA-1:exon:16012;Parent=Msa0373160-mRNA-1 |
| chr3_1 | exon | 72173840 | 72174064 | 72173840 | ID=Msa0373160-mRNA-1:exon:16011;Parent=Msa0373160-mRNA-1 |
| chr3_1 | exon | 72175742 | 72175960 | 72175742 | ID=Msa0373160-mRNA-1:exon:16010;Parent=Msa0373160-mRNA-1 |
| chr3_1 | exon | 72176763 | 72176930 | 72176763 | ID=Msa0373160-mRNA-1:exon:16009;Parent=Msa0373160-mRNA-1 |
| chr3_1 | exon | 72177025 | 72177574 | 72177025 | ID=Msa0373160-mRNA-1:exon:16008;Parent=Msa0373160-mRNA-1 |
| chr3_1 | five_prime_UTR | 72177241 | 72177574 | 72177241 | ID=Msa0373160-mRNA-1:five_prime_utr;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72177025 | 72177240 | 72177025 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72176763 | 72176930 | 72176763 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72175742 | 72175960 | 72175742 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72173840 | 72174064 | 72173840 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72173639 | 72173744 | 72173639 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72173314 | 72173549 | 72173314 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | CDS | 72173132 | 72173209 | 72173132 | ID=Msa0373160-mRNA-1:cds;Parent=Msa0373160-mRNA-1 |
| chr3_1 | three_prime_UTR | 72172649 | 72173131 | 72172649 | ID=Msa0373160-mRNA-1:three_prime_utr;Parent=Msa0373160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
