Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074600 | XP_013468849.2 | 94.958 | 238 | 7 | 4 | 1 | 238 | 1 | 233 | 4.07e-161 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074600 | sp|Q8LAP8|DOF46_ARATH | 40.066 | 302 | 110 | 10 | 1 | 235 | 1 | 298 | 1.09e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074600 | A0A072VXW2 | 94.958 | 238 | 7 | 4 | 1 | 238 | 1 | 233 | 1.94e-161 | 458 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0074600 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0074600 | 0.843279 | 1.545463e-58 | -8.615850e-47 |
| Msa0001940 | Msa0074600 | 0.813161 | 2.944166e-51 | -8.615850e-47 |
| Msa0001960 | Msa0074600 | 0.823686 | 1.211999e-53 | -8.615850e-47 |
| Msa0002580 | Msa0074600 | 0.814219 | 1.722368e-51 | -8.615850e-47 |
| Msa0017930 | Msa0074600 | 0.826758 | 2.275020e-54 | -8.615850e-47 |
| Msa0017950 | Msa0074600 | 0.812581 | 3.944631e-51 | -8.615850e-47 |
| Msa0030990 | Msa0074600 | 0.862465 | 4.970691e-64 | -8.615850e-47 |
| Msa0044090 | Msa0074600 | 0.804996 | 1.652151e-49 | -8.615850e-47 |
| Msa0051020 | Msa0074600 | 0.814489 | 1.500747e-51 | -8.615850e-47 |
| Msa0074600 | Msa0081020 | 0.857248 | 1.857744e-62 | -8.615850e-47 |
| Msa0074600 | Msa0089980 | 0.820043 | 8.447870e-53 | -8.615850e-47 |
| Msa0074600 | Msa0090010 | 0.817687 | 2.897782e-52 | -8.615850e-47 |
| Msa0074600 | Msa0101270 | 0.815088 | 1.105714e-51 | -8.615850e-47 |
| Msa0074600 | Msa0103770 | 0.835451 | 1.665392e-56 | -8.615850e-47 |
| Msa0074600 | Msa0106620 | 0.814239 | 1.704795e-51 | -8.615850e-47 |
| Msa0074600 | Msa0108410 | 0.834954 | 2.223422e-56 | -8.615850e-47 |
| Msa0074600 | Msa0126040 | 0.933378 | 2.055441e-95 | -8.615850e-47 |
| Msa0074600 | Msa0131900 | 0.804946 | 1.692158e-49 | -8.615850e-47 |
| Msa0074600 | Msa0183760 | 0.816815 | 4.553262e-52 | -8.615850e-47 |
| Msa0074600 | Msa0189710 | 0.800798 | 1.217268e-48 | -8.615850e-47 |
| Msa0074600 | Msa0191890 | 0.809660 | 1.695484e-50 | -8.615850e-47 |
| Msa0074600 | Msa0212990 | 0.804653 | 1.948670e-49 | -8.615850e-47 |
| Msa0074600 | Msa0225100 | 0.836164 | 1.098710e-56 | -8.615850e-47 |
| Msa0074600 | Msa0225860 | 0.803983 | 2.686237e-49 | -8.615850e-47 |
| Msa0074600 | Msa0232020 | 0.808490 | 3.019261e-50 | -8.615850e-47 |
| Msa0074600 | Msa0232090 | 0.803599 | 3.227938e-49 | -8.615850e-47 |
| Msa0074600 | Msa0237210 | 0.818668 | 1.738365e-52 | -8.615850e-47 |
| Msa0074600 | Msa0237420 | 0.815316 | 9.838300e-52 | -8.615850e-47 |
| Msa0074600 | Msa0240900 | 0.806128 | 9.560662e-50 | -8.615850e-47 |
| Msa0074600 | Msa0244640 | 0.844835 | 5.910115e-59 | -8.615850e-47 |
| Msa0074600 | Msa0251710 | 0.816506 | 5.339058e-52 | -8.615850e-47 |
| Msa0074600 | Msa0260780 | 0.804598 | 2.000737e-49 | -8.615850e-47 |
| Msa0074600 | Msa0264830 | 0.800964 | 1.125578e-48 | -8.615850e-47 |
| Msa0074600 | Msa0266180 | 0.836206 | 1.071762e-56 | -8.615850e-47 |
| Msa0074600 | Msa0283330 | 0.824819 | 6.563998e-54 | -8.615850e-47 |
| Msa0074600 | Msa0287740 | 0.832407 | 9.623256e-56 | -8.615850e-47 |
| Msa0074600 | Msa0287870 | 0.810693 | 1.015210e-50 | -8.615850e-47 |
| Msa0074600 | Msa0290720 | 0.814893 | 1.221523e-51 | -8.615850e-47 |
| Msa0074600 | Msa0302870 | 0.804411 | 2.188788e-49 | -8.615850e-47 |
| Msa0074600 | Msa0305840 | 0.801520 | 8.662507e-49 | -8.615850e-47 |
| Msa0074600 | Msa0308630 | 0.808825 | 2.560605e-50 | -8.615850e-47 |
| Msa0074600 | Msa0310090 | 0.804523 | 2.074187e-49 | -8.615850e-47 |
| Msa0074600 | Msa0312530 | 0.804194 | 2.428843e-49 | -8.615850e-47 |
| Msa0074600 | Msa0315690 | 0.810797 | 9.642273e-51 | -8.615850e-47 |
| Msa0074600 | Msa0321620 | 0.845304 | 4.413811e-59 | -8.615850e-47 |
| Msa0074600 | Msa0330340 | 0.806661 | 7.380945e-50 | -8.615850e-47 |
| Msa0074600 | Msa0336560 | 0.808513 | 2.984826e-50 | -8.615850e-47 |
| Msa0074600 | Msa0337580 | 0.821181 | 4.628141e-53 | -8.615850e-47 |
| Msa0074600 | Msa0337700 | 0.806258 | 8.974764e-50 | -8.615850e-47 |
| Msa0074600 | Msa0342010 | 0.802332 | 5.898191e-49 | -8.615850e-47 |
| Msa0074600 | Msa0358890 | 0.802316 | 5.943054e-49 | -8.615850e-47 |
| Msa0074600 | Msa0360210 | 0.803639 | 3.167238e-49 | -8.615850e-47 |
| Msa0074600 | Msa0376350 | 0.800545 | 1.370429e-48 | -8.615850e-47 |
| Msa0074600 | Msa0376630 | 0.809749 | 1.622608e-50 | -8.615850e-47 |
| Msa0074600 | Msa0403640 | 0.828938 | 6.803970e-55 | -8.615850e-47 |
| Msa0074600 | Msa0406770 | 0.800788 | 1.222694e-48 | -8.615850e-47 |
| Msa0074600 | Msa0434290 | 0.836229 | 1.057877e-56 | -8.615850e-47 |
| Msa0074600 | Msa0436910 | 0.820099 | 8.204262e-53 | -8.615850e-47 |
| Msa0074600 | Msa0448340 | 0.830908 | 2.253006e-55 | -8.615850e-47 |
| Msa0074600 | Msa0464680 | 0.802434 | 5.620805e-49 | -8.615850e-47 |
| Msa0074600 | Msa0471670 | 0.821118 | 4.786594e-53 | -8.615850e-47 |
| Msa0074600 | Msa0476680 | 0.802483 | 5.492738e-49 | -8.615850e-47 |
| Msa0074600 | Msa0483100 | 0.808167 | 3.538213e-50 | -8.615850e-47 |
| Msa0074600 | Msa0484650 | 0.800095 | 1.692741e-48 | -8.615850e-47 |
| Msa0074600 | Msa0519750 | 0.845034 | 5.222055e-59 | -8.615850e-47 |
| Msa0074600 | Msa0519820 | 0.839957 | 1.161278e-57 | -8.615850e-47 |
| Msa0074600 | Msa0519830 | 0.842291 | 2.828890e-58 | -8.615850e-47 |
| Msa0074600 | Msa0521010 | 0.806082 | 9.776419e-50 | -8.615850e-47 |
| Msa0074600 | Msa0522150 | 0.822153 | 2.759182e-53 | -8.615850e-47 |
| Msa0074600 | Msa0528570 | 0.803174 | 3.953765e-49 | -8.615850e-47 |
| Msa0074600 | Msa0544660 | 0.815214 | 1.036520e-51 | -8.615850e-47 |
| Msa0074600 | Msa0545850 | 0.806696 | 7.256069e-50 | -8.615850e-47 |
| Msa0074600 | Msa0549360 | 0.833455 | 5.280794e-56 | -8.615850e-47 |
| Msa0074600 | Msa0553200 | 0.809372 | 1.954605e-50 | -8.615850e-47 |
| Msa0074600 | Msa0556430 | 0.803703 | 3.071477e-49 | -8.615850e-47 |
| Msa0074600 | Msa0568800 | 0.815317 | 9.833972e-52 | -8.615850e-47 |
| Msa0074600 | Msa0571290 | 0.806815 | 6.848417e-50 | -8.615850e-47 |
| Msa0074600 | Msa0581470 | 0.821003 | 5.086749e-53 | -8.615850e-47 |
| Msa0074600 | Msa0607320 | 0.808162 | 3.545746e-50 | -8.615850e-47 |
| Msa0074600 | Msa0611210 | 0.814251 | 1.694128e-51 | -8.615850e-47 |
| Msa0074600 | Msa0616070 | 0.822140 | 2.777267e-53 | -8.615850e-47 |
| Msa0074600 | Msa0622810 | 0.807809 | 4.217089e-50 | -8.615850e-47 |
| Msa0074600 | Msa0626450 | 0.819479 | 1.136554e-52 | -8.615850e-47 |
| Msa0074600 | Msa0626490 | 0.815362 | 9.609062e-52 | -8.615850e-47 |
| Msa0074600 | Msa0637600 | 0.808115 | 3.628977e-50 | -8.615850e-47 |
| Msa0074600 | Msa0658580 | 0.810448 | 1.146765e-50 | -8.615850e-47 |
| Msa0074600 | Msa0659120 | 0.812461 | 4.191251e-51 | -8.615850e-47 |
| Msa0074600 | Msa0664600 | 0.824982 | 6.009051e-54 | -8.615850e-47 |
| Msa0074600 | Msa0674560 | 0.806313 | 8.738335e-50 | -8.615850e-47 |
| Msa0074600 | Msa0703540 | 0.811203 | 7.874701e-51 | -8.615850e-47 |
| Msa0074600 | Msa0709270 | 0.847305 | 1.258185e-59 | -8.615850e-47 |
| Msa0074600 | Msa0711430 | 0.800919 | 1.149634e-48 | -8.615850e-47 |
| Msa0074600 | Msa0723760 | 0.808904 | 2.462746e-50 | -8.615850e-47 |
| Msa0074600 | Msa0729150 | 0.853532 | 2.245620e-61 | -8.615850e-47 |
| Msa0074600 | Msa0729270 | 0.847214 | 1.332708e-59 | -8.615850e-47 |
| Msa0074600 | Msa0733010 | 0.821867 | 3.213575e-53 | -8.615850e-47 |
| Msa0074600 | Msa0736600 | 0.806636 | 7.473005e-50 | -8.615850e-47 |
| Msa0074600 | Msa0738240 | 0.808951 | 2.406650e-50 | -8.615850e-47 |
| Msa0074600 | Msa0738340 | 0.806661 | 7.380945e-50 | -8.615850e-47 |
| Msa0074600 | Msa0741220 | 0.802398 | 5.716782e-49 | -8.615850e-47 |
| Msa0074600 | Msa0751260 | 0.806576 | 7.693110e-50 | -8.615850e-47 |
| Msa0074600 | Msa0789100 | 0.814663 | 1.373760e-51 | -8.615850e-47 |
| Msa0074600 | Msa0797770 | 0.808147 | 3.572173e-50 | -8.615850e-47 |
| Msa0074600 | Msa0799970 | 0.813861 | 2.065548e-51 | -8.615850e-47 |
| Msa0074600 | Msa0833530 | 0.819418 | 1.173661e-52 | -8.615850e-47 |
| Msa0074600 | Msa0834770 | 0.805596 | 1.236694e-49 | -8.615850e-47 |
| Msa0074600 | Msa0835230 | 0.809736 | 1.632626e-50 | -8.615850e-47 |
| Msa0074600 | Msa0855870 | 0.829707 | 4.428961e-55 | -8.615850e-47 |
| Msa0074600 | Msa0870610 | 0.803837 | 2.881636e-49 | -8.615850e-47 |
| Msa0074600 | Msa0875290 | 0.812873 | 3.405459e-51 | -8.615850e-47 |
| Msa0074600 | Msa0881040 | 0.809948 | 1.469879e-50 | -8.615850e-47 |
| Msa0074600 | Msa0899970 | 0.809762 | 1.612153e-50 | -8.615850e-47 |
| Msa0074600 | Msa0900620 | 0.808781 | 2.616056e-50 | -8.615850e-47 |
| Msa0074600 | Msa0933760 | 0.806713 | 7.196660e-50 | -8.615850e-47 |
| Msa0074600 | Msa0935820 | 0.831273 | 1.832999e-55 | -8.615850e-47 |
| Msa0074600 | Msa0945490 | 0.828581 | 8.304190e-55 | -8.615850e-47 |
| Msa0074600 | Msa0965080 | 0.806470 | 8.099308e-50 | -8.615850e-47 |
| Msa0074600 | Msa0965290 | 0.814529 | 1.471174e-51 | -8.615850e-47 |
| Msa0074600 | Msa0967870 | 0.840779 | 7.079816e-58 | -8.615850e-47 |
| Msa0074600 | Msa0971650 | 0.804789 | 1.824684e-49 | -8.615850e-47 |
| Msa0074600 | Msa0986510 | 0.810261 | 1.258777e-50 | -8.615850e-47 |
| Msa0074600 | Msa0999680 | 0.816118 | 6.521105e-52 | -8.615850e-47 |
| Msa0074600 | Msa1004800 | 0.804084 | 2.560302e-49 | -8.615850e-47 |
| Msa0074600 | Msa1004970 | 0.816442 | 5.519129e-52 | -8.615850e-47 |
| Msa0074600 | Msa1019150 | 0.812276 | 4.598597e-51 | -8.615850e-47 |
| Msa0074600 | Msa1023500 | 0.800723 | 1.260777e-48 | -8.615850e-47 |
| Msa0074600 | Msa1023570 | 0.803005 | 4.284158e-49 | -8.615850e-47 |
| Msa0074600 | Msa1027990 | 0.825768 | 3.914104e-54 | -8.615850e-47 |
| Msa0074600 | Msa1034500 | 0.833848 | 4.213171e-56 | -8.615850e-47 |
| Msa0074600 | Msa1036610 | 0.802432 | 5.625823e-49 | -8.615850e-47 |
| Msa0074600 | Msa1041670 | 0.807085 | 6.004724e-50 | -8.615850e-47 |
| Msa0074600 | Msa1047080 | 0.818199 | 2.219968e-52 | -8.615850e-47 |
| Msa0074600 | Msa1066670 | 0.830817 | 2.371190e-55 | -8.615850e-47 |
| Msa0074600 | Msa1081330 | 0.804813 | 1.803649e-49 | -8.615850e-47 |
| Msa0074600 | Msa1096960 | 0.812695 | 3.725354e-51 | -8.615850e-47 |
| Msa0074600 | Msa1101090 | 0.809238 | 2.088690e-50 | -8.615850e-47 |
| Msa0074600 | Msa1111380 | 0.805990 | 1.022247e-49 | -8.615850e-47 |
| Msa0074600 | Msa1114780 | 0.801152 | 1.030564e-48 | -8.615850e-47 |
| Msa0074600 | Msa1132470 | 0.821760 | 3.402293e-53 | -8.615850e-47 |
| Msa0074600 | Msa1140220 | 0.806005 | 1.014779e-49 | -8.615850e-47 |
| Msa0074600 | Msa1144450 | 0.814819 | 1.268632e-51 | -8.615850e-47 |
| Msa0074600 | Msa1145810 | 0.821444 | 4.024342e-53 | -8.615850e-47 |
| Msa0074600 | Msa1147740 | 0.835959 | 1.238746e-56 | -8.615850e-47 |
| Msa0074600 | Msa1155900 | 0.814309 | 1.645142e-51 | -8.615850e-47 |
| Msa0074600 | Msa1161810 | 0.815807 | 7.652262e-52 | -8.615850e-47 |
| Msa0074600 | Msa1170760 | 0.805874 | 1.081004e-49 | -8.615850e-47 |
| Msa0074600 | Msa1186020 | 0.803760 | 2.989388e-49 | -8.615850e-47 |
| Msa0074600 | Msa1188180 | 0.829082 | 6.280304e-55 | -8.615850e-47 |
| Msa0074600 | Msa1193170 | 0.809005 | 2.342841e-50 | -8.615850e-47 |
| Msa0074600 | Msa1199570 | 0.803362 | 3.614860e-49 | -8.615850e-47 |
| Msa0074600 | Msa1208950 | 0.806195 | 9.254982e-50 | -8.615850e-47 |
| Msa0074600 | Msa1225860 | -0.805256 | 1.457676e-49 | -8.615850e-47 |
| Msa0074600 | Msa1226460 | 0.846735 | 1.801527e-59 | -8.615850e-47 |
| Msa0074600 | Msa1228200 | 0.802133 | 6.484133e-49 | -8.615850e-47 |
| Msa0074600 | Msa1232700 | 0.801032 | 1.090390e-48 | -8.615850e-47 |
| Msa0074600 | Msa1236460 | 0.813253 | 2.810051e-51 | -8.615850e-47 |
| Msa0074600 | Msa1238820 | 0.825348 | 4.924013e-54 | -8.615850e-47 |
| Msa0074600 | Msa1265650 | 0.815326 | 9.790815e-52 | -8.615850e-47 |
| Msa0074600 | Msa1283740 | 0.820570 | 6.395201e-53 | -8.615850e-47 |
| Msa0074600 | Msa1284900 | 0.812434 | 4.247459e-51 | -8.615850e-47 |
| Msa0074600 | Msa1297230 | 0.833147 | 6.301299e-56 | -8.615850e-47 |
| Msa0074600 | Msa1297290 | 0.803622 | 3.193113e-49 | -8.615850e-47 |
| Msa0074600 | Msa1303560 | 0.807535 | 4.819523e-50 | -8.615850e-47 |
| Msa0074600 | Msa1303650 | 0.810528 | 1.102284e-50 | -8.615850e-47 |
| Msa0074600 | Msa1305410 | 0.820837 | 5.553072e-53 | -8.615850e-47 |
| Msa0074600 | Msa1307560 | 0.804395 | 2.205682e-49 | -8.615850e-47 |
| Msa0074600 | Msa1309030 | 0.803780 | 2.960563e-49 | -8.615850e-47 |
| Msa0074600 | Msa1320670 | 0.802960 | 4.378717e-49 | -8.615850e-47 |
| Msa0074600 | Msa1333480 | 0.802604 | 5.184125e-49 | -8.615850e-47 |
| Msa0074600 | Msa1340200 | 0.811256 | 7.669467e-51 | -8.615850e-47 |
| Msa0074600 | Msa1341840 | 0.820475 | 6.727663e-53 | -8.615850e-47 |
| Msa0074600 | Msa1342380 | 0.806214 | 9.170425e-50 | -8.615850e-47 |
| Msa0074600 | Msa1343430 | 0.828597 | 8.229673e-55 | -8.615850e-47 |
| Msa0074600 | Msa1345810 | 0.838839 | 2.264956e-57 | -8.615850e-47 |
| Msa0074600 | Msa1348090 | 0.810925 | 9.046129e-51 | -8.615850e-47 |
| Msa0074600 | Msa1355450 | 0.957111 | 5.957949e-115 | -8.615850e-47 |
| Msa0074600 | Msa1368430 | 0.816939 | 4.269067e-52 | -8.615850e-47 |
| Msa0074600 | Msa1382300 | 0.809325 | 2.000770e-50 | -8.615850e-47 |
| Msa0074600 | Msa1383230 | 0.824672 | 7.111405e-54 | -8.615850e-47 |
| Msa0074600 | Msa1385000 | 0.802751 | 4.836048e-49 | -8.615850e-47 |
| Msa0074600 | Msa1397740 | 0.809780 | 1.597318e-50 | -8.615850e-47 |
| Msa0074600 | Msa1401270 | 0.808085 | 3.683255e-50 | -8.615850e-47 |
| Msa0074600 | Msa1402400 | 0.800070 | 1.712176e-48 | -8.615850e-47 |
| Msa0074600 | Msa1423780 | 0.811767 | 5.937850e-51 | -8.615850e-47 |
| Msa0074600 | Msa1425880 | 0.812735 | 3.650329e-51 | -8.615850e-47 |
| Msa0074600 | Msa1427100 | 0.825901 | 3.640360e-54 | -8.615850e-47 |
| Msa0074600 | Msa1434220 | 0.806959 | 6.383445e-50 | -8.615850e-47 |
| Msa0074600 | Msa1440960 | 0.823071 | 1.687225e-53 | -8.615850e-47 |
| Msa0074600 | Msa1442920 | 0.806055 | 9.902726e-50 | -8.615850e-47 |
| Msa0074600 | Msa1450100 | 0.801781 | 7.658693e-49 | -8.615850e-47 |
| Msa0074600 | Msa1452710 | 0.800969 | 1.123242e-48 | -8.615850e-47 |
| Msa0074600 | Msa1458680 | 0.816981 | 4.179092e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074600 | MtrunA17_Chr1g0188851 | 94.958 | 238 | 7 | 4 | 1 | 238 | 1 | 233 | 3.74e-165 | 458 |
| Msa0074600 | MtrunA17_Chr3g0127201 | 46.694 | 242 | 78 | 11 | 31 | 230 | 14 | 246 | 5.42e-53 | 173 |
| Msa0074600 | MtrunA17_Chr8g0346551 | 45.679 | 243 | 88 | 12 | 22 | 234 | 4 | 232 | 5.51e-51 | 167 |
| Msa0074600 | MtrunA17_Chr2g0326001 | 75.000 | 72 | 18 | 0 | 27 | 98 | 23 | 94 | 1.63e-35 | 128 |
| Msa0074600 | MtrunA17_Chr4g0030051 | 47.445 | 137 | 65 | 2 | 26 | 155 | 23 | 159 | 3.13e-33 | 122 |
| Msa0074600 | MtrunA17_Chr3g0117601 | 52.893 | 121 | 46 | 4 | 26 | 142 | 41 | 154 | 1.81e-32 | 121 |
| Msa0074600 | MtrunA17_Chr8g0367161 | 66.667 | 72 | 24 | 0 | 33 | 104 | 21 | 92 | 3.29e-29 | 112 |
| Msa0074600 | MtrunA17_Chr3g0126201 | 42.657 | 143 | 64 | 4 | 24 | 163 | 39 | 166 | 4.88e-29 | 112 |
| Msa0074600 | MtrunA17_Chr1g0177251 | 57.292 | 96 | 31 | 2 | 38 | 125 | 6 | 99 | 5.54e-29 | 110 |
| Msa0074600 | MtrunA17_Chr4g0031411 | 66.667 | 72 | 18 | 1 | 41 | 106 | 72 | 143 | 6.96e-29 | 111 |
| Msa0074600 | MtrunA17_Chr3g0092111 | 49.524 | 105 | 49 | 2 | 46 | 146 | 138 | 242 | 7.25e-29 | 113 |
| Msa0074600 | MtrunA17_Chr8g0374111 | 54.444 | 90 | 36 | 1 | 29 | 113 | 14 | 103 | 7.81e-29 | 109 |
| Msa0074600 | MtrunA17_Chr8g0341671 | 65.823 | 79 | 23 | 2 | 26 | 104 | 5 | 79 | 8.34e-29 | 108 |
| Msa0074600 | MtrunA17_Chr7g0223311 | 74.194 | 62 | 16 | 0 | 43 | 104 | 76 | 137 | 1.23e-28 | 111 |
| Msa0074600 | MtrunA17_Chr2g0328021 | 53.261 | 92 | 43 | 0 | 44 | 135 | 62 | 153 | 1.49e-28 | 109 |
| Msa0074600 | MtrunA17_Chr8g0374251 | 65.672 | 67 | 23 | 0 | 39 | 105 | 63 | 129 | 4.90e-28 | 109 |
| Msa0074600 | MtrunA17_Chr2g0282441 | 67.692 | 65 | 16 | 1 | 31 | 95 | 17 | 76 | 7.34e-28 | 108 |
| Msa0074600 | MtrunA17_Chr4g0047001 | 59.756 | 82 | 28 | 1 | 46 | 122 | 57 | 138 | 2.30e-27 | 108 |
| Msa0074600 | MtrunA17_Chr4g0010151 | 70.690 | 58 | 17 | 0 | 41 | 98 | 79 | 136 | 4.03e-27 | 107 |
| Msa0074600 | MtrunA17_Chr5g0411951 | 74.074 | 54 | 14 | 0 | 41 | 94 | 40 | 93 | 3.58e-26 | 104 |
| Msa0074600 | MtrunA17_Chr4g0061761 | 75.472 | 53 | 13 | 0 | 42 | 94 | 38 | 90 | 6.48e-26 | 103 |
| Msa0074600 | MtrunA17_Chr2g0308011 | 78.000 | 50 | 11 | 0 | 43 | 92 | 36 | 85 | 7.23e-26 | 100 |
| Msa0074600 | MtrunA17_Chr2g0282051 | 57.971 | 69 | 28 | 1 | 30 | 98 | 32 | 99 | 1.41e-25 | 101 |
| Msa0074600 | MtrunA17_Chr7g0237921 | 50.000 | 82 | 39 | 1 | 17 | 98 | 51 | 130 | 4.14e-25 | 101 |
| Msa0074600 | MtrunA17_Chr2g0282511 | 76.000 | 50 | 12 | 0 | 43 | 92 | 44 | 93 | 1.63e-24 | 99.8 |
| Msa0074600 | MtrunA17_Chr4g0042481 | 57.333 | 75 | 31 | 1 | 28 | 102 | 106 | 179 | 1.81e-24 | 101 |
| Msa0074600 | MtrunA17_Chr6g0453321 | 52.326 | 86 | 38 | 3 | 44 | 129 | 136 | 218 | 4.00e-24 | 100 |
| Msa0074600 | MtrunA17_Chr7g0217581 | 65.517 | 58 | 20 | 0 | 44 | 101 | 232 | 289 | 6.01e-24 | 100 |
| Msa0074600 | MtrunA17_Chr7g0254161 | 44.248 | 113 | 53 | 4 | 24 | 134 | 85 | 189 | 9.19e-24 | 99.0 |
| Msa0074600 | MtrunA17_Chr4g0047761 | 66.667 | 57 | 18 | 1 | 42 | 98 | 70 | 125 | 1.63e-23 | 97.1 |
| Msa0074600 | MtrunA17_Chr2g0283811 | 63.636 | 55 | 20 | 0 | 41 | 95 | 44 | 98 | 2.22e-23 | 93.2 |
| Msa0074600 | MtrunA17_Chr5g0417571 | 56.944 | 72 | 30 | 1 | 33 | 104 | 128 | 198 | 2.91e-23 | 96.3 |
| Msa0074600 | MtrunA17_Chr8g0355261 | 57.377 | 61 | 26 | 0 | 38 | 98 | 112 | 172 | 3.85e-23 | 97.4 |
| Msa0074600 | MtrunA17_Chr6g0460721 | 50.000 | 80 | 35 | 1 | 22 | 96 | 62 | 141 | 1.45e-22 | 94.7 |
| Msa0074600 | MtrunA17_Chr6g0460731 | 47.561 | 82 | 37 | 2 | 15 | 96 | 73 | 148 | 2.41e-22 | 94.7 |
| Msa0074600 | MtrunA17_Chr5g0417601 | 55.072 | 69 | 31 | 0 | 31 | 99 | 127 | 195 | 3.58e-22 | 94.4 |
| Msa0074600 | MtrunA17_Chr5g0417561 | 66.667 | 51 | 17 | 0 | 46 | 96 | 121 | 171 | 1.89e-20 | 89.4 |
| Msa0074600 | MtrunA17_Chr5g0417551 | 66.667 | 51 | 17 | 0 | 46 | 96 | 129 | 179 | 2.73e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074600 | AT4G24060.1 | 40.066 | 302 | 110 | 10 | 1 | 235 | 1 | 298 | 1.11e-48 | 164 |
| Msa0074600 | AT3G61850.5 | 45.378 | 238 | 88 | 12 | 37 | 238 | 55 | 286 | 9.92e-44 | 150 |
| Msa0074600 | AT3G61850.4 | 45.378 | 238 | 88 | 12 | 37 | 238 | 67 | 298 | 1.39e-43 | 150 |
| Msa0074600 | AT3G61850.2 | 45.249 | 221 | 85 | 11 | 37 | 238 | 55 | 258 | 1.39e-43 | 149 |
| Msa0074600 | AT3G61850.3 | 45.249 | 221 | 85 | 11 | 37 | 238 | 55 | 258 | 1.39e-43 | 149 |
| Msa0074600 | AT3G61850.1 | 45.249 | 221 | 85 | 11 | 37 | 238 | 67 | 270 | 1.57e-43 | 149 |
| Msa0074600 | AT1G64620.1 | 38.816 | 304 | 112 | 11 | 1 | 239 | 1 | 295 | 1.94e-42 | 148 |
| Msa0074600 | AT2G46590.2 | 43.359 | 256 | 84 | 12 | 31 | 233 | 69 | 316 | 1.48e-34 | 127 |
| Msa0074600 | AT2G46590.1 | 43.359 | 256 | 84 | 12 | 31 | 233 | 57 | 304 | 1.59e-34 | 127 |
| Msa0074600 | AT5G60200.1 | 52.885 | 104 | 47 | 1 | 38 | 139 | 49 | 152 | 6.64e-33 | 120 |
| Msa0074600 | AT1G51700.1 | 49.091 | 110 | 45 | 2 | 33 | 136 | 22 | 126 | 1.75e-31 | 115 |
| Msa0074600 | AT3G55370.1 | 69.118 | 68 | 21 | 0 | 41 | 108 | 73 | 140 | 4.71e-30 | 115 |
| Msa0074600 | AT4G00940.1 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 5.63e-30 | 114 |
| Msa0074600 | AT4G00940.3 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 5.63e-30 | 114 |
| Msa0074600 | AT4G00940.2 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 5.63e-30 | 114 |
| Msa0074600 | AT3G55370.2 | 69.118 | 68 | 21 | 0 | 41 | 108 | 73 | 140 | 6.33e-30 | 115 |
| Msa0074600 | AT3G55370.3 | 69.118 | 68 | 21 | 0 | 41 | 108 | 118 | 185 | 6.49e-30 | 115 |
| Msa0074600 | AT1G21340.1 | 45.833 | 144 | 67 | 5 | 40 | 175 | 31 | 171 | 6.94e-30 | 113 |
| Msa0074600 | AT2G28510.1 | 50.820 | 122 | 50 | 2 | 42 | 155 | 46 | 165 | 5.04e-29 | 111 |
| Msa0074600 | AT3G45610.1 | 56.322 | 87 | 36 | 2 | 28 | 114 | 25 | 109 | 5.15e-29 | 110 |
| Msa0074600 | AT5G65590.1 | 68.657 | 67 | 21 | 0 | 39 | 105 | 36 | 102 | 8.92e-29 | 111 |
| Msa0074600 | AT3G52440.1 | 75.410 | 61 | 15 | 0 | 46 | 106 | 27 | 87 | 9.81e-29 | 109 |
| Msa0074600 | AT3G52440.2 | 75.410 | 61 | 15 | 0 | 46 | 106 | 46 | 106 | 1.39e-28 | 109 |
| Msa0074600 | AT1G07640.1 | 78.182 | 55 | 12 | 0 | 44 | 98 | 21 | 75 | 6.95e-28 | 108 |
| Msa0074600 | AT1G07640.2 | 78.182 | 55 | 12 | 0 | 44 | 98 | 77 | 131 | 8.70e-28 | 108 |
| Msa0074600 | AT1G07640.3 | 78.182 | 55 | 12 | 0 | 44 | 98 | 85 | 139 | 1.09e-27 | 108 |
| Msa0074600 | AT4G38000.1 | 61.538 | 65 | 25 | 0 | 34 | 98 | 31 | 95 | 1.29e-27 | 106 |
| Msa0074600 | AT2G37590.1 | 70.000 | 60 | 18 | 0 | 41 | 100 | 86 | 145 | 1.38e-27 | 108 |
| Msa0074600 | AT5G60850.1 | 58.108 | 74 | 31 | 0 | 42 | 115 | 49 | 122 | 1.97e-27 | 107 |
| Msa0074600 | AT3G21270.1 | 73.684 | 57 | 15 | 0 | 44 | 100 | 29 | 85 | 2.13e-27 | 105 |
| Msa0074600 | AT3G50410.1 | 61.429 | 70 | 27 | 0 | 29 | 98 | 15 | 84 | 2.87e-27 | 105 |
| Msa0074600 | AT5G66940.1 | 65.152 | 66 | 23 | 0 | 40 | 105 | 28 | 93 | 4.23e-27 | 104 |
| Msa0074600 | AT1G28310.1 | 48.624 | 109 | 56 | 0 | 44 | 152 | 27 | 135 | 5.72e-27 | 106 |
| Msa0074600 | AT1G28310.2 | 48.624 | 109 | 56 | 0 | 44 | 152 | 51 | 159 | 7.28e-27 | 106 |
| Msa0074600 | AT2G28810.2 | 67.213 | 61 | 20 | 0 | 35 | 95 | 68 | 128 | 9.95e-27 | 106 |
| Msa0074600 | AT2G28810.1 | 67.213 | 61 | 20 | 0 | 35 | 95 | 85 | 145 | 1.50e-26 | 105 |
| Msa0074600 | AT5G02460.1 | 68.966 | 58 | 18 | 0 | 41 | 98 | 92 | 149 | 1.32e-25 | 104 |
| Msa0074600 | AT5G62940.1 | 72.131 | 61 | 14 | 1 | 34 | 94 | 66 | 123 | 1.55e-25 | 103 |
| Msa0074600 | AT1G47655.1 | 61.538 | 65 | 25 | 0 | 29 | 93 | 14 | 78 | 1.57e-25 | 100 |
| Msa0074600 | AT4G21050.1 | 68.333 | 60 | 19 | 0 | 46 | 105 | 26 | 85 | 2.49e-24 | 97.1 |
| Msa0074600 | AT2G34140.1 | 49.398 | 83 | 38 | 1 | 14 | 96 | 32 | 110 | 2.56e-24 | 96.3 |
| Msa0074600 | AT1G69570.1 | 60.526 | 76 | 26 | 1 | 28 | 103 | 120 | 191 | 2.65e-24 | 100 |
| Msa0074600 | AT5G62430.1 | 53.947 | 76 | 31 | 1 | 24 | 99 | 38 | 109 | 1.05e-23 | 97.4 |
| Msa0074600 | AT1G29160.1 | 50.667 | 75 | 37 | 0 | 23 | 97 | 41 | 115 | 1.06e-23 | 94.7 |
| Msa0074600 | AT5G39660.3 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.40e-23 | 99.4 |
| Msa0074600 | AT5G39660.1 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.40e-23 | 99.4 |
| Msa0074600 | AT5G39660.2 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.40e-23 | 99.4 |
| Msa0074600 | AT3G47500.1 | 63.793 | 58 | 21 | 0 | 44 | 101 | 110 | 167 | 3.06e-23 | 98.2 |
| Msa0074600 | AT4G21040.1 | 75.510 | 49 | 12 | 0 | 46 | 94 | 27 | 75 | 9.76e-23 | 93.6 |
| Msa0074600 | AT1G26790.1 | 54.545 | 77 | 31 | 1 | 20 | 96 | 91 | 163 | 1.04e-22 | 95.9 |
| Msa0074600 | AT4G21080.1 | 75.510 | 49 | 12 | 0 | 46 | 94 | 27 | 75 | 5.34e-22 | 92.0 |
| Msa0074600 | AT4G21030.1 | 53.333 | 60 | 28 | 0 | 46 | 105 | 23 | 82 | 3.35e-13 | 67.0 |
Find 64 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGCCTTCTATTAA+TGG | 0.125175 | 1_2:-49296569 | None:intergenic |
| GAAGGCCAAGATCTAAATTT+AGG | 0.134252 | 1_2:+49296920 | Msa0074600:CDS |
| CTTCTTCATGATGGATCTTA+TGG | 0.177246 | 1_2:-49296901 | None:intergenic |
| CATGATGGATCTTATGGTTT+TGG | 0.189658 | 1_2:-49296895 | None:intergenic |
| GCTTCTTGTTTCTGTTGTTT+TGG | 0.223578 | 1_2:-49296635 | None:intergenic |
| TTGAATATTGAAGGAGATTA+TGG | 0.238550 | 1_2:+49296541 | Msa0074600:intron |
| CCCTCACATATCTGATCATT+TGG | 0.252769 | 1_2:+49296946 | Msa0074600:CDS |
| GGTGGTGCAGGAGTAGAAAA+AGG | 0.253749 | 1_2:-49296120 | None:intergenic |
| TGATGGATTTGAAACAAAAT+TGG | 0.267429 | 1_2:-49296843 | None:intergenic |
| TTCCTGTTGGTGGTGGTTCT+AGG | 0.290051 | 1_2:+49296789 | Msa0074600:CDS |
| CCAATGAATTTCTGTTTAGA+TGG | 0.293399 | 1_2:+49297118 | Msa0074600:CDS |
| TTCATGCCTGCTCAAGTTCA+AGG | 0.318142 | 1_2:+49297061 | Msa0074600:CDS |
| TTCTTCTACTTCTTCAGCAT+TGG | 0.346624 | 1_2:+49296991 | Msa0074600:CDS |
| GGAACCCTAAATTTAGATCT+TGG | 0.357337 | 1_2:-49296925 | None:intergenic |
| AAGGCCAAGATCTAAATTTA+GGG | 0.366987 | 1_2:+49296921 | Msa0074600:CDS |
| TTTGGCTTCCTTTCCAACAT+AGG | 0.393371 | 1_2:-49296617 | None:intergenic |
| GCAAAACATGTAGAAGGTAT+TGG | 0.410442 | 1_2:+49296741 | Msa0074600:CDS |
| GATCTTGGCCTTCTTCATGA+TGG | 0.411783 | 1_2:-49296910 | None:intergenic |
| CAGGTTTGAGTTCAAGTTCA+AGG | 0.413495 | 1_2:+49297026 | Msa0074600:CDS |
| TTCTGTTTAGATGGGATCTC+AGG | 0.420885 | 1_2:+49297127 | Msa0074600:CDS |
| ACCAACAGGAATGTTTCTAA+TGG | 0.426405 | 1_2:-49296777 | None:intergenic |
| CCTGCTCAAGTTCAAGGTTG+TGG | 0.443611 | 1_2:+49297067 | Msa0074600:CDS |
| TTCCTAGAACCACCACCAAC+AGG | 0.444902 | 1_2:-49296791 | None:intergenic |
| CCATCTAAACAGAAATTCAT+TGG | 0.447886 | 1_2:-49297118 | None:intergenic |
| ATTTCTGCAAAACATGTAGA+AGG | 0.460389 | 1_2:+49296735 | Msa0074600:CDS |
| GCATTGGAGCTTCTTACTGC+AGG | 0.462786 | 1_2:+49297007 | Msa0074600:CDS |
| CAATGAATTTCTGTTTAGAT+GGG | 0.475119 | 1_2:+49297119 | Msa0074600:CDS |
| AAATAAGTTGAGAGAGAGAA+AGG | 0.480255 | 1_2:-49296180 | None:intergenic |
| ATCTCGTCTGCATAGATCCT+TGG | 0.482902 | 1_2:+49297412 | Msa0074600:CDS |
| ACATGTTTCAAATCCTCAAA+AGG | 0.498889 | 1_2:-49297217 | None:intergenic |
| CATAAGATCCATCATGAAGA+AGG | 0.500791 | 1_2:+49296902 | Msa0074600:CDS |
| TGAAAATTGAAAGGTGGTGC+AGG | 0.505306 | 1_2:-49296132 | None:intergenic |
| AGAAACATTCCTGTTGGTGG+TGG | 0.512070 | 1_2:+49296782 | Msa0074600:CDS |
| AAGAGACAATTAGTGAAGGA+AGG | 0.513089 | 1_2:+49297185 | Msa0074600:CDS |
| TATGCAGACGAGATCACGAC+GGG | 0.527267 | 1_2:-49297403 | None:intergenic |
| AGGCCATTGAGCTGTGTCCA+TGG | 0.529344 | 1_2:-49296268 | None:intergenic |
| ATTAGAAACATTCCTGTTGG+TGG | 0.530061 | 1_2:+49296779 | Msa0074600:CDS |
| GATCAAAGGATGAAGTTGAA+AGG | 0.535112 | 1_2:-49296224 | None:intergenic |
| TTTAGTTGAAAATTGAAAGG+TGG | 0.538140 | 1_2:-49296138 | None:intergenic |
| AGAGACAATTAGTGAAGGAA+GGG | 0.538775 | 1_2:+49297186 | Msa0074600:CDS |
| CCACAACCTTGAACTTGAGC+AGG | 0.540402 | 1_2:-49297067 | None:intergenic |
| AGGTTTGAGTTCAAGTTCAA+GGG | 0.544319 | 1_2:+49297027 | Msa0074600:CDS |
| TCCATTAGAAACATTCCTGT+TGG | 0.554777 | 1_2:+49296776 | Msa0074600:CDS |
| AAGAAGCAATTAACTGTCCA+AGG | 0.557523 | 1_2:+49296651 | Msa0074600:CDS |
| GGACACAGCTCAATGGCCTC+AGG | 0.562549 | 1_2:+49296272 | Msa0074600:CDS |
| AATCCATGGACACAGCTCAA+TGG | 0.565082 | 1_2:+49296265 | Msa0074600:exon |
| TGTAGAAGGTATTGGACTCA+AGG | 0.565800 | 1_2:+49296749 | Msa0074600:CDS |
| ATGGTGAAGCCATTAATAGA+AGG | 0.568853 | 1_2:+49296560 | Msa0074600:CDS |
| TCATCTTCTTCATCAATCCA+TGG | 0.570459 | 1_2:+49296251 | Msa0074600:exon |
| TTAGATGGGATCTCAGGAAG+TGG | 0.574889 | 1_2:+49297133 | Msa0074600:CDS |
| GGTCTTACTATGTGAACGGT+TGG | 0.575115 | 1_2:-49296067 | None:intergenic |
| TATGCAAGTACTCTTGATCA+TGG | 0.590246 | 1_2:+49297157 | Msa0074600:CDS |
| GTGTTAATTGAATTACACCT+TGG | 0.593541 | 1_2:-49296668 | None:intergenic |
| ACTTGCTTAAAATCTTGCAA+AGG | 0.603902 | 1_2:-49297094 | None:intergenic |
| CCAAATGATCAGATATGTGA+GGG | 0.610063 | 1_2:-49296946 | None:intergenic |
| AAGAAGATGATGATGATCAA+AGG | 0.617162 | 1_2:-49296238 | None:intergenic |
| GGGCGGTCTTACTATGTGAA+CGG | 0.619292 | 1_2:-49296071 | None:intergenic |
| ACCAAATGATCAGATATGTG+AGG | 0.628381 | 1_2:-49296947 | None:intergenic |
| GTTCAAGAGACAATTAGTGA+AGG | 0.630784 | 1_2:+49297181 | Msa0074600:CDS |
| TTATAGGAATGTGAGTGGGG+CGG | 0.652957 | 1_2:-49296088 | None:intergenic |
| TCAGTTTCACTAAGTGACCA+AGG | 0.664356 | 1_2:-49297429 | None:intergenic |
| AGAAGGTATTGGACTCAAGG+TGG | 0.674278 | 1_2:+49296752 | Msa0074600:CDS |
| CTATGCAGACGAGATCACGA+CGG | 0.745805 | 1_2:-49297404 | None:intergenic |
| ATGCAGACGAGATCACGACG+GGG | 0.826035 | 1_2:-49297402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTATTTTGAATATTGA+AGG | + | chr1_2:49296532-49296551 | Msa0074600:intron | 10.0% |
| !!! | TTAATTATTTTGAATATTGA+AGG | + | chr1_2:49296532-49296551 | Msa0074600:intron | 10.0% |
| !!! | TTTTTTAGTTGAAAATTGAA+AGG | - | chr1_2:49296144-49296163 | None:intergenic | 15.0% |
| !!! | TTTTTTAGTTGAAAATTGAA+AGG | - | chr1_2:49296144-49296163 | None:intergenic | 15.0% |
| !!! | AAAAAGGGAATGTTTTTTAT+AGG | - | chr1_2:49296107-49296126 | None:intergenic | 20.0% |
| !! | TCTTTATTGAAAAAAGCAAA+TGG | - | chr1_2:49296376-49296395 | None:intergenic | 20.0% |
| !!! | TTGAGTATATTTGTATCTTT+TGG | - | chr1_2:49296485-49296504 | None:intergenic | 20.0% |
| !!! | AAAAAGGGAATGTTTTTTAT+AGG | - | chr1_2:49296107-49296126 | None:intergenic | 20.0% |
| !! | TCTTTATTGAAAAAAGCAAA+TGG | - | chr1_2:49296376-49296395 | None:intergenic | 20.0% |
| !!! | TTGAGTATATTTGTATCTTT+TGG | - | chr1_2:49296485-49296504 | None:intergenic | 20.0% |
| !!! | TTTTTTATAGGAATGTGAGT+GGG | - | chr1_2:49296095-49296114 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAATTGAAAGG+TGG | - | chr1_2:49296141-49296160 | None:intergenic | 25.0% |
| ! | AAACTTATATGCAAAGTACA+TGG | - | chr1_2:49296310-49296329 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAACTTGTTGA+AGG | - | chr1_2:49296399-49296418 | None:intergenic | 25.0% |
| ! | TTGAATATTGAAGGAGATTA+TGG | + | chr1_2:49296541-49296560 | Msa0074600:intron | 25.0% |
| ! | ACAATATTGCCTTCTATTAA+TGG | - | chr1_2:49296572-49296591 | None:intergenic | 25.0% |
| !!! | TGATGGATTTGAAACAAAAT+TGG | - | chr1_2:49296846-49296865 | None:intergenic | 25.0% |
| !!! | TCAAGTATGTTTTTTGTTGA+AGG | - | chr1_2:49296869-49296888 | None:intergenic | 25.0% |
| ! | CAATGAATTTCTGTTTAGAT+GGG | + | chr1_2:49297119-49297138 | Msa0074600:CDS | 25.0% |
| ! | TACAAATAACCCAACAATAT+TGG | + | chr1_2:49297246-49297265 | Msa0074600:intron | 25.0% |
| !!! | TTTTTTATAGGAATGTGAGT+GGG | - | chr1_2:49296095-49296114 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAATTGAAAGG+TGG | - | chr1_2:49296141-49296160 | None:intergenic | 25.0% |
| ! | AAACTTATATGCAAAGTACA+TGG | - | chr1_2:49296310-49296329 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAACTTGTTGA+AGG | - | chr1_2:49296399-49296418 | None:intergenic | 25.0% |
| ! | TTGAATATTGAAGGAGATTA+TGG | + | chr1_2:49296541-49296560 | Msa0074600:intron | 25.0% |
| ! | ACAATATTGCCTTCTATTAA+TGG | - | chr1_2:49296572-49296591 | None:intergenic | 25.0% |
| !!! | TGATGGATTTGAAACAAAAT+TGG | - | chr1_2:49296846-49296865 | None:intergenic | 25.0% |
| !!! | TCAAGTATGTTTTTTGTTGA+AGG | - | chr1_2:49296869-49296888 | None:intergenic | 25.0% |
| ! | CAATGAATTTCTGTTTAGAT+GGG | + | chr1_2:49297119-49297138 | Msa0074600:CDS | 25.0% |
| ! | TACAAATAACCCAACAATAT+TGG | + | chr1_2:49297246-49297265 | Msa0074600:intron | 25.0% |
| ! | TTTTTATAGGAATGTGAGTG+GGG | - | chr1_2:49296094-49296113 | None:intergenic | 30.0% |
| !!! | GTTTTTTATAGGAATGTGAG+TGG | - | chr1_2:49296096-49296115 | None:intergenic | 30.0% |
| ! | AAATAAGTTGAGAGAGAGAA+AGG | - | chr1_2:49296183-49296202 | None:intergenic | 30.0% |
| ! | AAGAAGATGATGATGATCAA+AGG | - | chr1_2:49296241-49296260 | None:intergenic | 30.0% |
| ! | ATGGATTAATTAGTTACCTG+AGG | - | chr1_2:49296291-49296310 | None:intergenic | 30.0% |
| TACATGTGAAAAACCTATGT+TGG | + | chr1_2:49296604-49296623 | Msa0074600:CDS | 30.0% | |
| GTGTTAATTGAATTACACCT+TGG | - | chr1_2:49296671-49296690 | None:intergenic | 30.0% | |
| ! | CATGTTTTGCAGAAATATCT+TGG | - | chr1_2:49296731-49296750 | None:intergenic | 30.0% |
| ATTTCTGCAAAACATGTAGA+AGG | + | chr1_2:49296735-49296754 | Msa0074600:CDS | 30.0% | |
| !!! | ATGTTTTTTGTTGAAGGTGA+TGG | - | chr1_2:49296863-49296882 | None:intergenic | 30.0% |
| AAGGCCAAGATCTAAATTTA+GGG | + | chr1_2:49296921-49296940 | Msa0074600:CDS | 30.0% | |
| ACTTGCTTAAAATCTTGCAA+AGG | - | chr1_2:49297097-49297116 | None:intergenic | 30.0% | |
| CCATCTAAACAGAAATTCAT+TGG | - | chr1_2:49297121-49297140 | None:intergenic | 30.0% | |
| CCAATGAATTTCTGTTTAGA+TGG | + | chr1_2:49297118-49297137 | Msa0074600:CDS | 30.0% | |
| ACATGTTTCAAATCCTCAAA+AGG | - | chr1_2:49297220-49297239 | None:intergenic | 30.0% | |
| TAACCCAACAATATTGGATT+TGG | + | chr1_2:49297252-49297271 | Msa0074600:intron | 30.0% | |
| GATCCAAATCCAATATTGTT+GGG | - | chr1_2:49297258-49297277 | None:intergenic | 30.0% | |
| TGATCCAAATCCAATATTGT+TGG | - | chr1_2:49297259-49297278 | None:intergenic | 30.0% | |
| ! | TTTTTATAGGAATGTGAGTG+GGG | - | chr1_2:49296094-49296113 | None:intergenic | 30.0% |
| !!! | GTTTTTTATAGGAATGTGAG+TGG | - | chr1_2:49296096-49296115 | None:intergenic | 30.0% |
| ! | AAATAAGTTGAGAGAGAGAA+AGG | - | chr1_2:49296183-49296202 | None:intergenic | 30.0% |
| ! | AAGAAGATGATGATGATCAA+AGG | - | chr1_2:49296241-49296260 | None:intergenic | 30.0% |
| ! | ATGGATTAATTAGTTACCTG+AGG | - | chr1_2:49296291-49296310 | None:intergenic | 30.0% |
| TACATGTGAAAAACCTATGT+TGG | + | chr1_2:49296604-49296623 | Msa0074600:CDS | 30.0% | |
| GTGTTAATTGAATTACACCT+TGG | - | chr1_2:49296671-49296690 | None:intergenic | 30.0% | |
| ! | CATGTTTTGCAGAAATATCT+TGG | - | chr1_2:49296731-49296750 | None:intergenic | 30.0% |
| ATTTCTGCAAAACATGTAGA+AGG | + | chr1_2:49296735-49296754 | Msa0074600:CDS | 30.0% | |
| !!! | ATGTTTTTTGTTGAAGGTGA+TGG | - | chr1_2:49296863-49296882 | None:intergenic | 30.0% |
| AAGGCCAAGATCTAAATTTA+GGG | + | chr1_2:49296921-49296940 | Msa0074600:CDS | 30.0% | |
| ACTTGCTTAAAATCTTGCAA+AGG | - | chr1_2:49297097-49297116 | None:intergenic | 30.0% | |
| CCATCTAAACAGAAATTCAT+TGG | - | chr1_2:49297121-49297140 | None:intergenic | 30.0% | |
| CCAATGAATTTCTGTTTAGA+TGG | + | chr1_2:49297118-49297137 | Msa0074600:CDS | 30.0% | |
| ACATGTTTCAAATCCTCAAA+AGG | - | chr1_2:49297220-49297239 | None:intergenic | 30.0% | |
| TAACCCAACAATATTGGATT+TGG | + | chr1_2:49297252-49297271 | Msa0074600:intron | 30.0% | |
| GATCCAAATCCAATATTGTT+GGG | - | chr1_2:49297258-49297277 | None:intergenic | 30.0% | |
| TGATCCAAATCCAATATTGT+TGG | - | chr1_2:49297259-49297278 | None:intergenic | 30.0% | |
| GATCAAAGGATGAAGTTGAA+AGG | - | chr1_2:49296227-49296246 | None:intergenic | 35.0% | |
| TCATCTTCTTCATCAATCCA+TGG | + | chr1_2:49296251-49296270 | Msa0074600:exon | 35.0% | |
| ATGGTGAAGCCATTAATAGA+AGG | + | chr1_2:49296560-49296579 | Msa0074600:CDS | 35.0% | |
| GTGAAAAACCTATGTTGGAA+AGG | + | chr1_2:49296609-49296628 | Msa0074600:CDS | 35.0% | |
| !!! | GCTTCTTGTTTCTGTTGTTT+TGG | - | chr1_2:49296638-49296657 | None:intergenic | 35.0% |
| AAGAAGCAATTAACTGTCCA+AGG | + | chr1_2:49296651-49296670 | Msa0074600:CDS | 35.0% | |
| ! | GCAAAACATGTAGAAGGTAT+TGG | + | chr1_2:49296741-49296760 | Msa0074600:CDS | 35.0% |
| TCCATTAGAAACATTCCTGT+TGG | + | chr1_2:49296776-49296795 | Msa0074600:CDS | 35.0% | |
| ! | ACCAACAGGAATGTTTCTAA+TGG | - | chr1_2:49296780-49296799 | None:intergenic | 35.0% |
| ATTAGAAACATTCCTGTTGG+TGG | + | chr1_2:49296779-49296798 | Msa0074600:CDS | 35.0% | |
| !!! | CATGATGGATCTTATGGTTT+TGG | - | chr1_2:49296898-49296917 | None:intergenic | 35.0% |
| !! | CTTCTTCATGATGGATCTTA+TGG | - | chr1_2:49296904-49296923 | None:intergenic | 35.0% |
| CATAAGATCCATCATGAAGA+AGG | + | chr1_2:49296902-49296921 | Msa0074600:CDS | 35.0% | |
| GAAGGCCAAGATCTAAATTT+AGG | + | chr1_2:49296920-49296939 | Msa0074600:CDS | 35.0% | |
| GGAACCCTAAATTTAGATCT+TGG | - | chr1_2:49296928-49296947 | None:intergenic | 35.0% | |
| CCAAATGATCAGATATGTGA+GGG | - | chr1_2:49296949-49296968 | None:intergenic | 35.0% | |
| ACCAAATGATCAGATATGTG+AGG | - | chr1_2:49296950-49296969 | None:intergenic | 35.0% | |
| TTCTTCTACTTCTTCAGCAT+TGG | + | chr1_2:49296991-49297010 | Msa0074600:CDS | 35.0% | |
| ! | AGGTTTGAGTTCAAGTTCAA+GGG | + | chr1_2:49297027-49297046 | Msa0074600:CDS | 35.0% |
| TATGCAAGTACTCTTGATCA+TGG | + | chr1_2:49297157-49297176 | Msa0074600:CDS | 35.0% | |
| GTTCAAGAGACAATTAGTGA+AGG | + | chr1_2:49297181-49297200 | Msa0074600:CDS | 35.0% | |
| AAGAGACAATTAGTGAAGGA+AGG | + | chr1_2:49297185-49297204 | Msa0074600:CDS | 35.0% | |
| AGAGACAATTAGTGAAGGAA+GGG | + | chr1_2:49297186-49297205 | Msa0074600:CDS | 35.0% | |
| !!! | AAGGGTTTTGTTTCCTTTTG+AGG | + | chr1_2:49297204-49297223 | Msa0074600:CDS | 35.0% |
| GATCAAAGGATGAAGTTGAA+AGG | - | chr1_2:49296227-49296246 | None:intergenic | 35.0% | |
| TCATCTTCTTCATCAATCCA+TGG | + | chr1_2:49296251-49296270 | Msa0074600:exon | 35.0% | |
| ATGGTGAAGCCATTAATAGA+AGG | + | chr1_2:49296560-49296579 | Msa0074600:CDS | 35.0% | |
| GTGAAAAACCTATGTTGGAA+AGG | + | chr1_2:49296609-49296628 | Msa0074600:CDS | 35.0% | |
| !!! | GCTTCTTGTTTCTGTTGTTT+TGG | - | chr1_2:49296638-49296657 | None:intergenic | 35.0% |
| AAGAAGCAATTAACTGTCCA+AGG | + | chr1_2:49296651-49296670 | Msa0074600:CDS | 35.0% | |
| ! | GCAAAACATGTAGAAGGTAT+TGG | + | chr1_2:49296741-49296760 | Msa0074600:CDS | 35.0% |
| TCCATTAGAAACATTCCTGT+TGG | + | chr1_2:49296776-49296795 | Msa0074600:CDS | 35.0% | |
| ! | ACCAACAGGAATGTTTCTAA+TGG | - | chr1_2:49296780-49296799 | None:intergenic | 35.0% |
| ATTAGAAACATTCCTGTTGG+TGG | + | chr1_2:49296779-49296798 | Msa0074600:CDS | 35.0% | |
| !!! | CATGATGGATCTTATGGTTT+TGG | - | chr1_2:49296898-49296917 | None:intergenic | 35.0% |
| !! | CTTCTTCATGATGGATCTTA+TGG | - | chr1_2:49296904-49296923 | None:intergenic | 35.0% |
| CATAAGATCCATCATGAAGA+AGG | + | chr1_2:49296902-49296921 | Msa0074600:CDS | 35.0% | |
| GAAGGCCAAGATCTAAATTT+AGG | + | chr1_2:49296920-49296939 | Msa0074600:CDS | 35.0% | |
| GGAACCCTAAATTTAGATCT+TGG | - | chr1_2:49296928-49296947 | None:intergenic | 35.0% | |
| CCAAATGATCAGATATGTGA+GGG | - | chr1_2:49296949-49296968 | None:intergenic | 35.0% | |
| ACCAAATGATCAGATATGTG+AGG | - | chr1_2:49296950-49296969 | None:intergenic | 35.0% | |
| TTCTTCTACTTCTTCAGCAT+TGG | + | chr1_2:49296991-49297010 | Msa0074600:CDS | 35.0% | |
| ! | AGGTTTGAGTTCAAGTTCAA+GGG | + | chr1_2:49297027-49297046 | Msa0074600:CDS | 35.0% |
| TATGCAAGTACTCTTGATCA+TGG | + | chr1_2:49297157-49297176 | Msa0074600:CDS | 35.0% | |
| GTTCAAGAGACAATTAGTGA+AGG | + | chr1_2:49297181-49297200 | Msa0074600:CDS | 35.0% | |
| AAGAGACAATTAGTGAAGGA+AGG | + | chr1_2:49297185-49297204 | Msa0074600:CDS | 35.0% | |
| AGAGACAATTAGTGAAGGAA+GGG | + | chr1_2:49297186-49297205 | Msa0074600:CDS | 35.0% | |
| !!! | AAGGGTTTTGTTTCCTTTTG+AGG | + | chr1_2:49297204-49297223 | Msa0074600:CDS | 35.0% |
| TGAAAATTGAAAGGTGGTGC+AGG | - | chr1_2:49296135-49296154 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCTTTCCAACAT+AGG | - | chr1_2:49296620-49296639 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTCA+AGG | + | chr1_2:49296749-49296768 | Msa0074600:CDS | 40.0% |
| CCCTCACATATCTGATCATT+TGG | + | chr1_2:49296946-49296965 | Msa0074600:CDS | 40.0% | |
| ! | CAGGTTTGAGTTCAAGTTCA+AGG | + | chr1_2:49297026-49297045 | Msa0074600:CDS | 40.0% |
| TTCTGTTTAGATGGGATCTC+AGG | + | chr1_2:49297127-49297146 | Msa0074600:CDS | 40.0% | |
| TCAGTTTCACTAAGTGACCA+AGG | - | chr1_2:49297432-49297451 | None:intergenic | 40.0% | |
| TGAAAATTGAAAGGTGGTGC+AGG | - | chr1_2:49296135-49296154 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCTTTCCAACAT+AGG | - | chr1_2:49296620-49296639 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTCA+AGG | + | chr1_2:49296749-49296768 | Msa0074600:CDS | 40.0% |
| CCCTCACATATCTGATCATT+TGG | + | chr1_2:49296946-49296965 | Msa0074600:CDS | 40.0% | |
| ! | CAGGTTTGAGTTCAAGTTCA+AGG | + | chr1_2:49297026-49297045 | Msa0074600:CDS | 40.0% |
| TTCTGTTTAGATGGGATCTC+AGG | + | chr1_2:49297127-49297146 | Msa0074600:CDS | 40.0% | |
| TCAGTTTCACTAAGTGACCA+AGG | - | chr1_2:49297432-49297451 | None:intergenic | 40.0% | |
| GGTCTTACTATGTGAACGGT+TGG | - | chr1_2:49296070-49296089 | None:intergenic | 45.0% | |
| TTATAGGAATGTGAGTGGGG+CGG | - | chr1_2:49296091-49296110 | None:intergenic | 45.0% | |
| GTGGTGCAGGAGTAGAAAAA+GGG | - | chr1_2:49296122-49296141 | None:intergenic | 45.0% | |
| AATCCATGGACACAGCTCAA+TGG | + | chr1_2:49296265-49296284 | Msa0074600:exon | 45.0% | |
| !! | AGAAGGTATTGGACTCAAGG+TGG | + | chr1_2:49296752-49296771 | Msa0074600:CDS | 45.0% |
| ! | AGAAACATTCCTGTTGGTGG+TGG | + | chr1_2:49296782-49296801 | Msa0074600:CDS | 45.0% |
| ! | GATCTTGGCCTTCTTCATGA+TGG | - | chr1_2:49296913-49296932 | None:intergenic | 45.0% |
| TTCATGCCTGCTCAAGTTCA+AGG | + | chr1_2:49297061-49297080 | Msa0074600:CDS | 45.0% | |
| TTAGATGGGATCTCAGGAAG+TGG | + | chr1_2:49297133-49297152 | Msa0074600:CDS | 45.0% | |
| GGGGAACTGACATCAAAACT+AGG | - | chr1_2:49297386-49297405 | None:intergenic | 45.0% | |
| ATCTCGTCTGCATAGATCCT+TGG | + | chr1_2:49297412-49297431 | Msa0074600:CDS | 45.0% | |
| GGTCTTACTATGTGAACGGT+TGG | - | chr1_2:49296070-49296089 | None:intergenic | 45.0% | |
| TTATAGGAATGTGAGTGGGG+CGG | - | chr1_2:49296091-49296110 | None:intergenic | 45.0% | |
| GTGGTGCAGGAGTAGAAAAA+GGG | - | chr1_2:49296122-49296141 | None:intergenic | 45.0% | |
| AATCCATGGACACAGCTCAA+TGG | + | chr1_2:49296265-49296284 | Msa0074600:exon | 45.0% | |
| !! | AGAAGGTATTGGACTCAAGG+TGG | + | chr1_2:49296752-49296771 | Msa0074600:CDS | 45.0% |
| ! | AGAAACATTCCTGTTGGTGG+TGG | + | chr1_2:49296782-49296801 | Msa0074600:CDS | 45.0% |
| ! | GATCTTGGCCTTCTTCATGA+TGG | - | chr1_2:49296913-49296932 | None:intergenic | 45.0% |
| TTCATGCCTGCTCAAGTTCA+AGG | + | chr1_2:49297061-49297080 | Msa0074600:CDS | 45.0% | |
| TTAGATGGGATCTCAGGAAG+TGG | + | chr1_2:49297133-49297152 | Msa0074600:CDS | 45.0% | |
| GGGGAACTGACATCAAAACT+AGG | - | chr1_2:49297386-49297405 | None:intergenic | 45.0% | |
| ATCTCGTCTGCATAGATCCT+TGG | + | chr1_2:49297412-49297431 | Msa0074600:CDS | 45.0% | |
| GGGCGGTCTTACTATGTGAA+CGG | - | chr1_2:49296074-49296093 | None:intergenic | 50.0% | |
| GGTGGTGCAGGAGTAGAAAA+AGG | - | chr1_2:49296123-49296142 | None:intergenic | 50.0% | |
| !! | TTCCTGTTGGTGGTGGTTCT+AGG | + | chr1_2:49296789-49296808 | Msa0074600:CDS | 50.0% |
| TTCCTAGAACCACCACCAAC+AGG | - | chr1_2:49296794-49296813 | None:intergenic | 50.0% | |
| GCATTGGAGCTTCTTACTGC+AGG | + | chr1_2:49297007-49297026 | Msa0074600:CDS | 50.0% | |
| CCACAACCTTGAACTTGAGC+AGG | - | chr1_2:49297070-49297089 | None:intergenic | 50.0% | |
| CCTGCTCAAGTTCAAGGTTG+TGG | + | chr1_2:49297067-49297086 | Msa0074600:CDS | 50.0% | |
| TATGCAGACGAGATCACGAC+GGG | - | chr1_2:49297406-49297425 | None:intergenic | 50.0% | |
| CTATGCAGACGAGATCACGA+CGG | - | chr1_2:49297407-49297426 | None:intergenic | 50.0% | |
| GGGCGGTCTTACTATGTGAA+CGG | - | chr1_2:49296074-49296093 | None:intergenic | 50.0% | |
| GGTGGTGCAGGAGTAGAAAA+AGG | - | chr1_2:49296123-49296142 | None:intergenic | 50.0% | |
| !! | TTCCTGTTGGTGGTGGTTCT+AGG | + | chr1_2:49296789-49296808 | Msa0074600:CDS | 50.0% |
| TTCCTAGAACCACCACCAAC+AGG | - | chr1_2:49296794-49296813 | None:intergenic | 50.0% | |
| GCATTGGAGCTTCTTACTGC+AGG | + | chr1_2:49297007-49297026 | Msa0074600:CDS | 50.0% | |
| CCACAACCTTGAACTTGAGC+AGG | - | chr1_2:49297070-49297089 | None:intergenic | 50.0% | |
| CCTGCTCAAGTTCAAGGTTG+TGG | + | chr1_2:49297067-49297086 | Msa0074600:CDS | 50.0% | |
| TATGCAGACGAGATCACGAC+GGG | - | chr1_2:49297406-49297425 | None:intergenic | 50.0% | |
| CTATGCAGACGAGATCACGA+CGG | - | chr1_2:49297407-49297426 | None:intergenic | 50.0% | |
| AGGCCATTGAGCTGTGTCCA+TGG | - | chr1_2:49296271-49296290 | None:intergenic | 55.0% | |
| ATGCAGACGAGATCACGACG+GGG | - | chr1_2:49297405-49297424 | None:intergenic | 55.0% | |
| AGGCCATTGAGCTGTGTCCA+TGG | - | chr1_2:49296271-49296290 | None:intergenic | 55.0% | |
| ATGCAGACGAGATCACGACG+GGG | - | chr1_2:49297405-49297424 | None:intergenic | 55.0% | |
| GGACACAGCTCAATGGCCTC+AGG | + | chr1_2:49296272-49296291 | Msa0074600:CDS | 60.0% | |
| GGACACAGCTCAATGGCCTC+AGG | + | chr1_2:49296272-49296291 | Msa0074600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 49296056 | 49297461 | 49296056 | ID=Msa0074600;Name=Msa0074600 |
| chr1_2 | mRNA | 49296056 | 49297461 | 49296056 | ID=Msa0074600-mRNA-1;Parent=Msa0074600;Name=Msa0074600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=214|0.5|0.33|0.66|1|1|3|0|258 |
| chr1_2 | exon | 49296056 | 49296293 | 49296056 | ID=Msa0074600-mRNA-1:exon:15082;Parent=Msa0074600-mRNA-1 |
| chr1_2 | exon | 49296554 | 49297244 | 49296554 | ID=Msa0074600-mRNA-1:exon:15083;Parent=Msa0074600-mRNA-1 |
| chr1_2 | exon | 49297400 | 49297461 | 49297400 | ID=Msa0074600-mRNA-1:exon:15084;Parent=Msa0074600-mRNA-1 |
| chr1_2 | five_prime_UTR | 49296056 | 49296269 | 49296056 | ID=Msa0074600-mRNA-1:five_prime_utr;Parent=Msa0074600-mRNA-1 |
| chr1_2 | CDS | 49296270 | 49296293 | 49296270 | ID=Msa0074600-mRNA-1:cds;Parent=Msa0074600-mRNA-1 |
| chr1_2 | CDS | 49296554 | 49297244 | 49296554 | ID=Msa0074600-mRNA-1:cds;Parent=Msa0074600-mRNA-1 |
| chr1_2 | CDS | 49297400 | 49297461 | 49297400 | ID=Msa0074600-mRNA-1:cds;Parent=Msa0074600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
