Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030990 | XP_039684757.1 | 94.757 | 267 | 8 | 5 | 11 | 276 | 1 | 262 | 4.60e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030990 | sp|Q8LAP8|DOF46_ARATH | 39.481 | 347 | 133 | 13 | 1 | 276 | 1 | 341 | 2.18e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0030990 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0030990 | 0.816052 | 6.746593e-52 | -8.615850e-47 |
| Msa0001960 | Msa0030990 | 0.822069 | 2.885512e-53 | -8.615850e-47 |
| Msa0002710 | Msa0030990 | 0.802409 | 5.687937e-49 | -8.615850e-47 |
| Msa0030990 | Msa0051020 | 0.830288 | 3.195493e-55 | -8.615850e-47 |
| Msa0030990 | Msa0060760 | 0.813687 | 2.256668e-51 | -8.615850e-47 |
| Msa0030990 | Msa0074600 | 0.862465 | 4.970691e-64 | -8.615850e-47 |
| Msa0030990 | Msa0089980 | 0.800694 | 1.278227e-48 | -8.615850e-47 |
| Msa0030990 | Msa0101270 | 0.827235 | 1.749613e-54 | -8.615850e-47 |
| Msa0030990 | Msa0105120 | 0.824264 | 8.868411e-54 | -8.615850e-47 |
| Msa0030990 | Msa0106620 | 0.803375 | 3.592909e-49 | -8.615850e-47 |
| Msa0030990 | Msa0108390 | 0.801293 | 9.641993e-49 | -8.615850e-47 |
| Msa0030990 | Msa0108410 | 0.823870 | 1.097520e-53 | -8.615850e-47 |
| Msa0030990 | Msa0126040 | 0.858955 | 5.771314e-63 | -8.615850e-47 |
| Msa0030990 | Msa0138360 | 0.811213 | 7.834304e-51 | -8.615850e-47 |
| Msa0030990 | Msa0141400 | 0.802758 | 4.819574e-49 | -8.615850e-47 |
| Msa0030990 | Msa0145580 | 0.820755 | 5.801775e-53 | -8.615850e-47 |
| Msa0030990 | Msa0151840 | 0.822304 | 2.544963e-53 | -8.615850e-47 |
| Msa0030990 | Msa0175930 | 0.806301 | 8.791772e-50 | -8.615850e-47 |
| Msa0030990 | Msa0182360 | 0.803841 | 2.875338e-49 | -8.615850e-47 |
| Msa0030990 | Msa0187030 | 0.807111 | 5.928537e-50 | -8.615850e-47 |
| Msa0030990 | Msa0191890 | 0.818597 | 1.803596e-52 | -8.615850e-47 |
| Msa0030990 | Msa0196380 | 0.800449 | 1.433806e-48 | -8.615850e-47 |
| Msa0030990 | Msa0230370 | 0.810627 | 1.049389e-50 | -8.615850e-47 |
| Msa0030990 | Msa0240900 | 0.801662 | 8.100846e-49 | -8.615850e-47 |
| Msa0030990 | Msa0244640 | 0.816449 | 5.499298e-52 | -8.615850e-47 |
| Msa0030990 | Msa0251710 | 0.808265 | 3.371292e-50 | -8.615850e-47 |
| Msa0030990 | Msa0266180 | 0.810117 | 1.352015e-50 | -8.615850e-47 |
| Msa0030990 | Msa0267920 | 0.810604 | 1.061402e-50 | -8.615850e-47 |
| Msa0030990 | Msa0287740 | 0.804391 | 2.209371e-49 | -8.615850e-47 |
| Msa0030990 | Msa0312530 | 0.822674 | 2.087435e-53 | -8.615850e-47 |
| Msa0030990 | Msa0321620 | 0.815307 | 9.888179e-52 | -8.615850e-47 |
| Msa0030990 | Msa0341540 | 0.810768 | 9.781177e-51 | -8.615850e-47 |
| Msa0030990 | Msa0360210 | 0.811353 | 7.303907e-51 | -8.615850e-47 |
| Msa0030990 | Msa0376630 | 0.814465 | 1.519224e-51 | -8.615850e-47 |
| Msa0030990 | Msa0406770 | 0.807219 | 5.625926e-50 | -8.615850e-47 |
| Msa0030990 | Msa0427120 | 0.804732 | 1.875539e-49 | -8.615850e-47 |
| Msa0030990 | Msa0474730 | 0.806409 | 8.344190e-50 | -8.615850e-47 |
| Msa0030990 | Msa0485240 | 0.803655 | 3.142431e-49 | -8.615850e-47 |
| Msa0030990 | Msa0518030 | 0.810026 | 1.414280e-50 | -8.615850e-47 |
| Msa0030990 | Msa0527190 | 0.825012 | 5.909747e-54 | -8.615850e-47 |
| Msa0030990 | Msa0544660 | 0.811519 | 6.724326e-51 | -8.615850e-47 |
| Msa0030990 | Msa0549360 | 0.823738 | 1.178405e-53 | -8.615850e-47 |
| Msa0030990 | Msa0553200 | 0.808419 | 3.125446e-50 | -8.615850e-47 |
| Msa0030990 | Msa0568800 | 0.800974 | 1.120427e-48 | -8.615850e-47 |
| Msa0030990 | Msa0581470 | 0.805889 | 1.073208e-49 | -8.615850e-47 |
| Msa0030990 | Msa0607320 | 0.813902 | 2.023637e-51 | -8.615850e-47 |
| Msa0030990 | Msa0626450 | 0.803916 | 2.774560e-49 | -8.615850e-47 |
| Msa0030990 | Msa0656000 | 0.802724 | 4.898404e-49 | -8.615850e-47 |
| Msa0030990 | Msa0664600 | 0.805812 | 1.114304e-49 | -8.615850e-47 |
| Msa0030990 | Msa0702720 | 0.800955 | 1.130286e-48 | -8.615850e-47 |
| Msa0030990 | Msa0709270 | 0.819567 | 1.085122e-52 | -8.615850e-47 |
| Msa0030990 | Msa0711430 | 0.816337 | 5.825076e-52 | -8.615850e-47 |
| Msa0030990 | Msa0729150 | 0.803233 | 3.844273e-49 | -8.615850e-47 |
| Msa0030990 | Msa0751260 | 0.814908 | 1.212319e-51 | -8.615850e-47 |
| Msa0030990 | Msa0752020 | 0.800097 | 1.691136e-48 | -8.615850e-47 |
| Msa0030990 | Msa0752450 | 0.802092 | 6.610879e-49 | -8.615850e-47 |
| Msa0030990 | Msa0778590 | 0.803101 | 4.094465e-49 | -8.615850e-47 |
| Msa0030990 | Msa0795070 | 0.808612 | 2.843802e-50 | -8.615850e-47 |
| Msa0030990 | Msa0815960 | 0.805748 | 1.149129e-49 | -8.615850e-47 |
| Msa0030990 | Msa0832120 | 0.807568 | 4.744007e-50 | -8.615850e-47 |
| Msa0030990 | Msa0855870 | 0.802719 | 4.910173e-49 | -8.615850e-47 |
| Msa0030990 | Msa0861510 | 0.802840 | 4.634938e-49 | -8.615850e-47 |
| Msa0030990 | Msa0861600 | 0.806464 | 8.122732e-50 | -8.615850e-47 |
| Msa0030990 | Msa0935820 | 0.816404 | 5.627843e-52 | -8.615850e-47 |
| Msa0030990 | Msa0945490 | 0.823019 | 1.734881e-53 | -8.615850e-47 |
| Msa0030990 | Msa0967870 | 0.800378 | 1.482297e-48 | -8.615850e-47 |
| Msa0030990 | Msa0971650 | 0.821953 | 3.068948e-53 | -8.615850e-47 |
| Msa0030990 | Msa0986510 | 0.838312 | 3.098577e-57 | -8.615850e-47 |
| Msa0030990 | Msa1023500 | 0.825426 | 4.718898e-54 | -8.615850e-47 |
| Msa0030990 | Msa1023570 | 0.801819 | 7.520644e-49 | -8.615850e-47 |
| Msa0030990 | Msa1034500 | 0.844664 | 6.570543e-59 | -8.615850e-47 |
| Msa0030990 | Msa1059960 | 0.813349 | 2.677244e-51 | -8.615850e-47 |
| Msa0030990 | Msa1084950 | 0.804179 | 2.446330e-49 | -8.615850e-47 |
| Msa0030990 | Msa1085330 | 0.816036 | 6.800462e-52 | -8.615850e-47 |
| Msa0030990 | Msa1094190 | 0.806042 | 9.965457e-50 | -8.615850e-47 |
| Msa0030990 | Msa1105160 | 0.811419 | 7.067794e-51 | -8.615850e-47 |
| Msa0030990 | Msa1145810 | 0.800795 | 1.218911e-48 | -8.615850e-47 |
| Msa0030990 | Msa1199570 | 0.815925 | 7.199718e-52 | -8.615850e-47 |
| Msa0030990 | Msa1226460 | 0.816476 | 5.422195e-52 | -8.615850e-47 |
| Msa0030990 | Msa1328640 | 0.828118 | 1.073713e-54 | -8.615850e-47 |
| Msa0030990 | Msa1328710 | 0.807966 | 3.904751e-50 | -8.615850e-47 |
| Msa0030990 | Msa1341840 | 0.801266 | 9.763382e-49 | -8.615850e-47 |
| Msa0030990 | Msa1348090 | 0.838616 | 2.587092e-57 | -8.615850e-47 |
| Msa0030990 | Msa1355450 | 0.889088 | 3.312208e-73 | -8.615850e-47 |
| Msa0030990 | Msa1371520 | 0.820514 | 6.590031e-53 | -8.615850e-47 |
| Msa0030990 | Msa1382400 | 0.806434 | 8.241469e-50 | -8.615850e-47 |
| Msa0030990 | Msa1383230 | 0.801954 | 7.056750e-49 | -8.615850e-47 |
| Msa0030990 | Msa1401270 | 0.818259 | 2.152284e-52 | -8.615850e-47 |
| Msa0030990 | Msa1418240 | 0.813208 | 2.875919e-51 | -8.615850e-47 |
| Msa0030990 | Msa1419520 | 0.804071 | 2.575549e-49 | -8.615850e-47 |
| Msa0030990 | Msa1440960 | 0.803601 | 3.225093e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030990 | MtrunA17_Chr1g0188851 | 93.985 | 266 | 11 | 4 | 1 | 266 | 1 | 261 | 1.87e-168 | 468 |
| Msa0030990 | MtrunA17_Chr3g0127201 | 44.828 | 290 | 103 | 14 | 31 | 276 | 14 | 290 | 4.00e-59 | 190 |
| Msa0030990 | MtrunA17_Chr8g0346551 | 44.211 | 285 | 110 | 14 | 22 | 276 | 4 | 269 | 4.78e-58 | 186 |
| Msa0030990 | MtrunA17_Chr2g0326001 | 73.611 | 72 | 19 | 0 | 27 | 98 | 23 | 94 | 8.47e-35 | 127 |
| Msa0030990 | MtrunA17_Chr3g0117601 | 34.680 | 297 | 138 | 15 | 26 | 275 | 41 | 328 | 4.32e-34 | 126 |
| Msa0030990 | MtrunA17_Chr4g0030051 | 46.715 | 137 | 66 | 2 | 26 | 155 | 23 | 159 | 1.67e-32 | 120 |
| Msa0030990 | MtrunA17_Chr8g0341671 | 67.089 | 79 | 22 | 2 | 26 | 104 | 5 | 79 | 1.69e-29 | 111 |
| Msa0030990 | MtrunA17_Chr8g0367161 | 66.667 | 72 | 24 | 0 | 33 | 104 | 21 | 92 | 1.98e-29 | 114 |
| Msa0030990 | MtrunA17_Chr4g0031411 | 66.667 | 72 | 18 | 1 | 41 | 106 | 72 | 143 | 5.65e-29 | 112 |
| Msa0030990 | MtrunA17_Chr1g0177251 | 57.292 | 96 | 31 | 2 | 38 | 125 | 6 | 99 | 7.12e-29 | 111 |
| Msa0030990 | MtrunA17_Chr3g0126201 | 60.976 | 82 | 24 | 1 | 24 | 105 | 39 | 112 | 8.77e-29 | 112 |
| Msa0030990 | MtrunA17_Chr8g0374111 | 54.444 | 90 | 36 | 1 | 29 | 113 | 14 | 103 | 9.63e-29 | 109 |
| Msa0030990 | MtrunA17_Chr3g0092111 | 49.524 | 105 | 49 | 2 | 46 | 146 | 138 | 242 | 9.69e-29 | 114 |
| Msa0030990 | MtrunA17_Chr2g0328021 | 53.261 | 92 | 43 | 0 | 44 | 135 | 62 | 153 | 1.06e-28 | 110 |
| Msa0030990 | MtrunA17_Chr7g0223311 | 74.194 | 62 | 16 | 0 | 43 | 104 | 76 | 137 | 1.38e-28 | 112 |
| Msa0030990 | MtrunA17_Chr8g0374251 | 61.972 | 71 | 27 | 0 | 39 | 109 | 63 | 133 | 5.23e-28 | 110 |
| Msa0030990 | MtrunA17_Chr2g0282441 | 67.692 | 65 | 16 | 1 | 31 | 95 | 17 | 76 | 1.38e-27 | 108 |
| Msa0030990 | MtrunA17_Chr4g0047001 | 59.756 | 82 | 28 | 1 | 46 | 122 | 57 | 138 | 1.97e-27 | 109 |
| Msa0030990 | MtrunA17_Chr4g0010151 | 70.690 | 58 | 17 | 0 | 41 | 98 | 79 | 136 | 3.53e-27 | 108 |
| Msa0030990 | MtrunA17_Chr5g0411951 | 74.074 | 54 | 14 | 0 | 41 | 94 | 40 | 93 | 3.39e-26 | 105 |
| Msa0030990 | MtrunA17_Chr4g0061761 | 75.472 | 53 | 13 | 0 | 42 | 94 | 38 | 90 | 6.17e-26 | 103 |
| Msa0030990 | MtrunA17_Chr2g0308011 | 78.000 | 50 | 11 | 0 | 43 | 92 | 36 | 85 | 1.06e-25 | 100 |
| Msa0030990 | MtrunA17_Chr2g0282051 | 57.971 | 69 | 28 | 1 | 30 | 98 | 32 | 99 | 3.14e-25 | 101 |
| Msa0030990 | MtrunA17_Chr2g0282511 | 76.000 | 50 | 12 | 0 | 43 | 92 | 44 | 93 | 1.90e-24 | 99.8 |
| Msa0030990 | MtrunA17_Chr4g0042481 | 57.971 | 69 | 29 | 0 | 28 | 96 | 106 | 174 | 2.78e-24 | 101 |
| Msa0030990 | MtrunA17_Chr6g0453321 | 48.913 | 92 | 44 | 3 | 38 | 129 | 130 | 218 | 2.97e-24 | 101 |
| Msa0030990 | MtrunA17_Chr7g0217581 | 58.824 | 68 | 24 | 1 | 34 | 101 | 226 | 289 | 6.28e-24 | 100 |
| Msa0030990 | MtrunA17_Chr7g0254161 | 44.643 | 112 | 54 | 3 | 24 | 134 | 85 | 189 | 6.81e-24 | 100 |
| Msa0030990 | MtrunA17_Chr2g0283811 | 63.636 | 55 | 20 | 0 | 41 | 95 | 44 | 98 | 1.94e-23 | 93.6 |
| Msa0030990 | MtrunA17_Chr4g0047761 | 66.667 | 57 | 18 | 1 | 42 | 98 | 70 | 125 | 2.09e-23 | 97.1 |
| Msa0030990 | MtrunA17_Chr8g0355261 | 56.061 | 66 | 25 | 1 | 34 | 99 | 112 | 173 | 3.83e-23 | 97.8 |
| Msa0030990 | MtrunA17_Chr5g0417571 | 52.703 | 74 | 35 | 0 | 31 | 104 | 125 | 198 | 6.48e-23 | 95.9 |
| Msa0030990 | MtrunA17_Chr6g0460721 | 50.000 | 80 | 35 | 1 | 22 | 96 | 62 | 141 | 1.12e-22 | 95.5 |
| Msa0030990 | MtrunA17_Chr6g0460731 | 47.561 | 82 | 37 | 2 | 15 | 96 | 73 | 148 | 1.33e-22 | 95.9 |
| Msa0030990 | MtrunA17_Chr5g0417601 | 55.072 | 69 | 31 | 0 | 31 | 99 | 127 | 195 | 5.19e-22 | 94.4 |
| Msa0030990 | MtrunA17_Chr5g0417561 | 66.667 | 51 | 17 | 0 | 46 | 96 | 121 | 171 | 2.29e-20 | 89.4 |
| Msa0030990 | MtrunA17_Chr7g0237921 | 25.597 | 293 | 131 | 9 | 34 | 273 | 65 | 323 | 2.99e-20 | 89.0 |
| Msa0030990 | MtrunA17_Chr5g0417551 | 56.250 | 64 | 24 | 1 | 33 | 96 | 120 | 179 | 3.18e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030990 | AT4G24060.1 | 39.481 | 347 | 133 | 13 | 1 | 276 | 1 | 341 | 2.22e-55 | 182 |
| Msa0030990 | AT3G61850.5 | 42.909 | 275 | 101 | 15 | 39 | 276 | 57 | 312 | 4.00e-46 | 157 |
| Msa0030990 | AT3G61850.2 | 42.636 | 258 | 98 | 14 | 39 | 276 | 57 | 284 | 5.34e-46 | 156 |
| Msa0030990 | AT3G61850.3 | 42.636 | 258 | 98 | 14 | 39 | 276 | 57 | 284 | 5.34e-46 | 156 |
| Msa0030990 | AT3G61850.4 | 42.909 | 275 | 101 | 15 | 39 | 276 | 69 | 324 | 5.38e-46 | 157 |
| Msa0030990 | AT3G61850.1 | 42.969 | 256 | 96 | 14 | 41 | 276 | 71 | 296 | 6.34e-46 | 156 |
| Msa0030990 | AT1G64620.1 | 38.040 | 347 | 128 | 14 | 1 | 269 | 1 | 338 | 1.66e-43 | 151 |
| Msa0030990 | AT2G46590.1 | 39.871 | 311 | 112 | 16 | 31 | 276 | 57 | 357 | 2.30e-38 | 138 |
| Msa0030990 | AT2G46590.2 | 39.871 | 311 | 112 | 16 | 31 | 276 | 69 | 369 | 3.27e-38 | 138 |
| Msa0030990 | AT5G60200.1 | 52.885 | 104 | 47 | 1 | 38 | 139 | 49 | 152 | 3.49e-33 | 122 |
| Msa0030990 | AT1G51700.1 | 59.756 | 82 | 33 | 0 | 35 | 116 | 24 | 105 | 3.59e-31 | 115 |
| Msa0030990 | AT3G55370.1 | 69.118 | 68 | 21 | 0 | 41 | 108 | 73 | 140 | 3.85e-30 | 115 |
| Msa0030990 | AT3G55370.2 | 69.118 | 68 | 21 | 0 | 41 | 108 | 73 | 140 | 4.54e-30 | 116 |
| Msa0030990 | AT3G55370.3 | 59.756 | 82 | 31 | 1 | 27 | 108 | 106 | 185 | 4.77e-30 | 116 |
| Msa0030990 | AT4G00940.1 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 6.78e-30 | 114 |
| Msa0030990 | AT4G00940.3 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 6.78e-30 | 114 |
| Msa0030990 | AT4G00940.2 | 82.759 | 58 | 10 | 0 | 41 | 98 | 65 | 122 | 6.78e-30 | 114 |
| Msa0030990 | AT1G21340.1 | 45.833 | 144 | 67 | 5 | 40 | 175 | 31 | 171 | 9.34e-30 | 113 |
| Msa0030990 | AT2G28510.1 | 50.820 | 122 | 50 | 2 | 42 | 155 | 46 | 165 | 1.82e-29 | 113 |
| Msa0030990 | AT3G45610.1 | 56.322 | 87 | 36 | 2 | 28 | 114 | 25 | 109 | 2.96e-29 | 111 |
| Msa0030990 | AT3G52440.1 | 66.216 | 74 | 23 | 1 | 35 | 106 | 14 | 87 | 3.17e-29 | 111 |
| Msa0030990 | AT3G52440.2 | 66.216 | 74 | 23 | 1 | 35 | 106 | 33 | 106 | 4.71e-29 | 111 |
| Msa0030990 | AT5G65590.1 | 68.657 | 67 | 21 | 0 | 39 | 105 | 36 | 102 | 6.57e-29 | 112 |
| Msa0030990 | AT1G07640.1 | 78.182 | 55 | 12 | 0 | 44 | 98 | 21 | 75 | 8.22e-28 | 108 |
| Msa0030990 | AT1G07640.2 | 78.182 | 55 | 12 | 0 | 44 | 98 | 77 | 131 | 1.00e-27 | 109 |
| Msa0030990 | AT4G38000.1 | 61.538 | 65 | 25 | 0 | 34 | 98 | 31 | 95 | 1.01e-27 | 107 |
| Msa0030990 | AT2G37590.1 | 70.000 | 60 | 18 | 0 | 41 | 100 | 86 | 145 | 1.14e-27 | 109 |
| Msa0030990 | AT1G07640.3 | 78.182 | 55 | 12 | 0 | 44 | 98 | 85 | 139 | 1.36e-27 | 109 |
| Msa0030990 | AT5G60850.1 | 57.333 | 75 | 32 | 0 | 41 | 115 | 48 | 122 | 1.42e-27 | 108 |
| Msa0030990 | AT3G21270.1 | 73.684 | 57 | 15 | 0 | 44 | 100 | 29 | 85 | 2.21e-27 | 105 |
| Msa0030990 | AT1G28310.1 | 48.624 | 109 | 56 | 0 | 44 | 152 | 27 | 135 | 2.24e-27 | 108 |
| Msa0030990 | AT5G66940.1 | 65.152 | 66 | 23 | 0 | 40 | 105 | 28 | 93 | 3.18e-27 | 105 |
| Msa0030990 | AT1G28310.2 | 48.624 | 109 | 56 | 0 | 44 | 152 | 51 | 159 | 3.19e-27 | 108 |
| Msa0030990 | AT3G50410.1 | 61.429 | 70 | 27 | 0 | 29 | 98 | 15 | 84 | 3.81e-27 | 106 |
| Msa0030990 | AT2G28810.2 | 67.213 | 61 | 20 | 0 | 35 | 95 | 68 | 128 | 1.07e-26 | 106 |
| Msa0030990 | AT2G28810.1 | 67.213 | 61 | 20 | 0 | 35 | 95 | 85 | 145 | 1.54e-26 | 106 |
| Msa0030990 | AT5G62940.1 | 72.131 | 61 | 14 | 1 | 34 | 94 | 66 | 123 | 8.14e-26 | 105 |
| Msa0030990 | AT5G02460.1 | 68.966 | 58 | 18 | 0 | 41 | 98 | 92 | 149 | 9.83e-26 | 105 |
| Msa0030990 | AT1G47655.1 | 61.538 | 65 | 25 | 0 | 29 | 93 | 14 | 78 | 2.34e-25 | 100 |
| Msa0030990 | AT2G34140.1 | 48.810 | 84 | 39 | 1 | 14 | 97 | 32 | 111 | 1.19e-24 | 97.4 |
| Msa0030990 | AT4G21050.1 | 68.333 | 60 | 19 | 0 | 46 | 105 | 26 | 85 | 1.98e-24 | 97.8 |
| Msa0030990 | AT1G69570.1 | 60.526 | 76 | 26 | 1 | 28 | 103 | 120 | 191 | 2.04e-24 | 101 |
| Msa0030990 | AT5G62430.1 | 48.837 | 86 | 40 | 1 | 24 | 109 | 38 | 119 | 9.56e-24 | 98.2 |
| Msa0030990 | AT5G39660.3 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.05e-23 | 100 |
| Msa0030990 | AT5G39660.1 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.05e-23 | 100 |
| Msa0030990 | AT5G39660.2 | 43.878 | 98 | 51 | 1 | 38 | 135 | 132 | 225 | 1.05e-23 | 100 |
| Msa0030990 | AT1G29160.1 | 50.667 | 75 | 37 | 0 | 23 | 97 | 41 | 115 | 1.18e-23 | 95.1 |
| Msa0030990 | AT3G47500.1 | 63.793 | 58 | 21 | 0 | 44 | 101 | 110 | 167 | 3.24e-23 | 98.6 |
| Msa0030990 | AT1G26790.1 | 54.545 | 77 | 31 | 1 | 20 | 96 | 91 | 163 | 5.55e-23 | 97.1 |
| Msa0030990 | AT4G21040.1 | 75.510 | 49 | 12 | 0 | 46 | 94 | 27 | 75 | 1.16e-22 | 94.0 |
| Msa0030990 | AT4G21080.1 | 75.510 | 49 | 12 | 0 | 46 | 94 | 27 | 75 | 6.14e-22 | 92.4 |
| Msa0030990 | AT4G21030.1 | 53.333 | 60 | 28 | 0 | 46 | 105 | 23 | 82 | 1.84e-13 | 67.8 |
Find 81 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATATTGCCTTCTATTAA+TGG | 0.125175 | 1_1:-57521133 | None:intergenic |
| GAAGGCCAAGATCTAAATTT+AGG | 0.134252 | 1_1:+57521484 | Msa0030990:CDS |
| CTTCTTCATGATGGATCTTA+TGG | 0.177246 | 1_1:-57521465 | None:intergenic |
| CATGATGGATCTTATGGTTT+TGG | 0.189658 | 1_1:-57521459 | None:intergenic |
| TTGAATATTGAAGGAGATTA+TGG | 0.238550 | 1_1:+57521105 | Msa0030990:intron |
| CCCTCACATATCTGATCATT+TGG | 0.252769 | 1_1:+57521510 | Msa0030990:CDS |
| TGACGGATTTGAAACAAAAT+TGG | 0.261701 | 1_1:-57521407 | None:intergenic |
| GCTTCTTGTTTCTGTTGATT+TGG | 0.268462 | 1_1:-57521199 | None:intergenic |
| TAACCCAACAATATTGGATT+TGG | 0.276934 | 1_1:+57521816 | Msa0030990:CDS |
| TACAAATAACCCAACAATAT+TGG | 0.279491 | 1_1:+57521810 | Msa0030990:CDS |
| GGTGGTGCAGAAGTAGAAAA+AGG | 0.288489 | 1_1:-57520672 | None:intergenic |
| TTCCTGTTGGTGGTGGTTCT+AGG | 0.290051 | 1_1:+57521353 | Msa0030990:CDS |
| CCAATGAATTTCTGTTTAGA+TGG | 0.293399 | 1_1:+57521682 | Msa0030990:CDS |
| TTGATTGTTGTTGTATATAT+TGG | 0.297614 | 1_1:+57522249 | Msa0030990:three_prime_UTR |
| TTCATGCCTGCTCAAGTTCA+AGG | 0.318142 | 1_1:+57521625 | Msa0030990:CDS |
| TTCTTCTACTTCTTCAGCAT+TGG | 0.346624 | 1_1:+57521555 | Msa0030990:CDS |
| TTTGGATCAGAATAATAATA+AGG | 0.356949 | 1_1:+57521834 | Msa0030990:CDS |
| GGAACCCTAAATTTAGATCT+TGG | 0.357337 | 1_1:-57521489 | None:intergenic |
| AAGGCCAAGATCTAAATTTA+GGG | 0.366987 | 1_1:+57521485 | Msa0030990:CDS |
| GATCCAAATCCAATATTGTT+GGG | 0.402423 | 1_1:-57521819 | None:intergenic |
| GCAAAACATGTAGAAGGTAT+TGG | 0.410442 | 1_1:+57521305 | Msa0030990:CDS |
| GATCTTGGCCTTCTTCATGA+TGG | 0.411783 | 1_1:-57521474 | None:intergenic |
| CAGGTTTGAGTTCAAGTTCA+AGG | 0.413495 | 1_1:+57521590 | Msa0030990:CDS |
| TTCTGTTTAGATGGGATCTC+AGG | 0.420885 | 1_1:+57521691 | Msa0030990:CDS |
| ACCAACAGGAATGTTTCTAA+TGG | 0.426405 | 1_1:-57521341 | None:intergenic |
| TTTCTTCTCTCTATTTCAAT+CGG | 0.436411 | 1_1:-57521998 | None:intergenic |
| GGGATTTGGACTGGAATGTT+GGG | 0.441281 | 1_1:+57521880 | Msa0030990:CDS |
| TTTGGCTTCCTTTCCAACAT+AGG | 0.441634 | 1_1:-57521181 | None:intergenic |
| GGTAATTAGCCGATTCTACT+TGG | 0.443491 | 1_1:+57522211 | Msa0030990:three_prime_UTR |
| CCTGCTCAAGTTCAAGGTTG+TGG | 0.443611 | 1_1:+57521631 | Msa0030990:CDS |
| TTCCTAGAACCACCACCAAC+AGG | 0.444902 | 1_1:-57521355 | None:intergenic |
| CCATCTAAACAGAAATTCAT+TGG | 0.447886 | 1_1:-57521682 | None:intergenic |
| AGAGAGAAAGAGAGAGAGAA+AGG | 0.450248 | 1_1:-57520732 | None:intergenic |
| ACTGGAATGTTGGGAGGAGG+AGG | 0.456613 | 1_1:+57521889 | Msa0030990:CDS |
| TTTATTCCACCAAGTAGAAT+CGG | 0.459469 | 1_1:-57522220 | None:intergenic |
| ATTTCTGCAAAACATGTAGA+AGG | 0.460389 | 1_1:+57521299 | Msa0030990:CDS |
| AGGATCATGGTAATTTACTT+AGG | 0.462497 | 1_1:+57521912 | Msa0030990:exon |
| GCATTGGAGCTTCTTACTGC+AGG | 0.462786 | 1_1:+57521571 | Msa0030990:CDS |
| TGATCCAAATCCAATATTGT+TGG | 0.463007 | 1_1:-57521820 | None:intergenic |
| AGGGATTTGGACTGGAATGT+TGG | 0.470831 | 1_1:+57521879 | Msa0030990:CDS |
| CAATGAATTTCTGTTTAGAT+GGG | 0.475119 | 1_1:+57521683 | Msa0030990:CDS |
| TGGACTGGAATGTTGGGAGG+AGG | 0.475312 | 1_1:+57521886 | Msa0030990:CDS |
| GGAATGTTGGGAGGAGGAGG+AGG | 0.484270 | 1_1:+57521892 | Msa0030990:CDS |
| ACATGTTTCAAATCCTCAAA+AGG | 0.498889 | 1_1:-57521781 | None:intergenic |
| CATAAGATCCATCATGAAGA+AGG | 0.500791 | 1_1:+57521466 | Msa0030990:CDS |
| AGAAACATTCCTGTTGGTGG+TGG | 0.512070 | 1_1:+57521346 | Msa0030990:CDS |
| AAGAGACAATTAGTGAAGGA+AGG | 0.513089 | 1_1:+57521749 | Msa0030990:CDS |
| AGGCCATTGAGCTGTGTCCA+TGG | 0.529344 | 1_1:-57520832 | None:intergenic |
| ATTAGAAACATTCCTGTTGG+TGG | 0.530061 | 1_1:+57521343 | Msa0030990:CDS |
| GATCAAAGGATGAAGTTGAA+AGG | 0.535112 | 1_1:-57520788 | None:intergenic |
| TTTAGTTGAAAATTGAAAGG+TGG | 0.538140 | 1_1:-57520690 | None:intergenic |
| AGAGACAATTAGTGAAGGAA+GGG | 0.538775 | 1_1:+57521750 | Msa0030990:CDS |
| CCACAACCTTGAACTTGAGC+AGG | 0.540402 | 1_1:-57521631 | None:intergenic |
| TAGTTTCTAAGTATTAGAGA+TGG | 0.543992 | 1_1:+57522084 | Msa0030990:three_prime_UTR |
| AGGTTTGAGTTCAAGTTCAA+GGG | 0.544319 | 1_1:+57521591 | Msa0030990:CDS |
| AATTAGCCGATTCTACTTGG+TGG | 0.550109 | 1_1:+57522214 | Msa0030990:three_prime_UTR |
| AATTTACTTAGGAGAAGTCA+TGG | 0.552704 | 1_1:+57521923 | Msa0030990:exon |
| TCCATTAGAAACATTCCTGT+TGG | 0.554777 | 1_1:+57521340 | Msa0030990:CDS |
| AAGAAGCAATTAACTGTCCA+AGG | 0.557523 | 1_1:+57521215 | Msa0030990:CDS |
| GGACACAGCTCAATGGCCTC+AGG | 0.562549 | 1_1:+57520836 | Msa0030990:CDS |
| AATCCATGGACACAGCTCAA+TGG | 0.565082 | 1_1:+57520829 | Msa0030990:exon |
| TGTAGAAGGTATTGGACTCA+AGG | 0.565800 | 1_1:+57521313 | Msa0030990:CDS |
| ATGGTGAAGCCATTAATAGA+AGG | 0.568853 | 1_1:+57521124 | Msa0030990:CDS |
| TCATCTTCTTCATCAATCCA+TGG | 0.570459 | 1_1:+57520815 | Msa0030990:exon |
| TTAGATGGGATCTCAGGAAG+TGG | 0.574889 | 1_1:+57521697 | Msa0030990:CDS |
| GGTCTTACTATGTGAACGGT+TGG | 0.575115 | 1_1:-57520619 | None:intergenic |
| AATTACCTTGACGCTAGCCT+AGG | 0.586448 | 1_1:-57522195 | None:intergenic |
| TATGCAAGTACTCTTGATCA+TGG | 0.590246 | 1_1:+57521721 | Msa0030990:CDS |
| GTGTTAATTGAATTACACCT+TGG | 0.593541 | 1_1:-57521232 | None:intergenic |
| ATTTGGACTGGAATGTTGGG+AGG | 0.599027 | 1_1:+57521883 | Msa0030990:CDS |
| ACTTGCTTAAAATCTTGCAA+AGG | 0.603902 | 1_1:-57521658 | None:intergenic |
| CCAAATGATCAGATATGTGA+GGG | 0.610063 | 1_1:-57521510 | None:intergenic |
| AAGAAGATGATGATGATCAA+AGG | 0.617162 | 1_1:-57520802 | None:intergenic |
| GGGCGGTCTTACTATGTGAA+CGG | 0.619292 | 1_1:-57520623 | None:intergenic |
| TTATCAACAAGAATTAGTGA+TGG | 0.619446 | 1_1:+57522034 | Msa0030990:three_prime_UTR |
| ACCAAATGATCAGATATGTG+AGG | 0.628381 | 1_1:-57521511 | None:intergenic |
| GTTCAAGAGACAATTAGTGA+AGG | 0.630784 | 1_1:+57521745 | Msa0030990:CDS |
| TTATAGGAATGTGAGTGGGG+CGG | 0.652957 | 1_1:-57520640 | None:intergenic |
| AGAAGGTATTGGACTCAAGG+TGG | 0.674278 | 1_1:+57521316 | Msa0030990:CDS |
| GAACACCTAGGCTAGCGTCA+AGG | 0.688180 | 1_1:+57522190 | Msa0030990:three_prime_UTR |
| AATAATAAGGAAGATCAACA+AGG | 0.712044 | 1_1:+57521847 | Msa0030990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTATTTTGAATATTGA+AGG | + | chr1_1:57521096-57521115 | Msa0030990:intron | 10.0% |
| !!! | TTAATTATTTTGAATATTGA+AGG | + | chr1_1:57521096-57521115 | Msa0030990:intron | 10.0% |
| !!! | TTTTTTAGTTGAAAATTGAA+AGG | - | chr1_1:57520696-57520715 | None:intergenic | 15.0% |
| !!! | TTTTTTAGTTGAAAATTGAA+AGG | - | chr1_1:57520696-57520715 | None:intergenic | 15.0% |
| !!! | AAAAAGGGAATGTTTTTTAT+AGG | - | chr1_1:57520659-57520678 | None:intergenic | 20.0% |
| !! | TCTTTATTGAAAAAAGCAAA+TGG | - | chr1_1:57520940-57520959 | None:intergenic | 20.0% |
| !! | TTTGGATCAGAATAATAATA+AGG | + | chr1_1:57521834-57521853 | Msa0030990:CDS | 20.0% |
| !!! | TTGATTGTTGTTGTATATAT+TGG | + | chr1_1:57522249-57522268 | Msa0030990:three_prime_UTR | 20.0% |
| !!! | AAAAAGGGAATGTTTTTTAT+AGG | - | chr1_1:57520659-57520678 | None:intergenic | 20.0% |
| !! | TCTTTATTGAAAAAAGCAAA+TGG | - | chr1_1:57520940-57520959 | None:intergenic | 20.0% |
| !! | TTTGGATCAGAATAATAATA+AGG | + | chr1_1:57521834-57521853 | Msa0030990:CDS | 20.0% |
| !!! | TTGATTGTTGTTGTATATAT+TGG | + | chr1_1:57522249-57522268 | Msa0030990:three_prime_UTR | 20.0% |
| !!! | TTTTTTATAGGAATGTGAGT+GGG | - | chr1_1:57520647-57520666 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAATTGAAAGG+TGG | - | chr1_1:57520693-57520712 | None:intergenic | 25.0% |
| ! | AAACTTATATGCAAAGTACA+TGG | - | chr1_1:57520874-57520893 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAACTTGTTGA+AGG | - | chr1_1:57520963-57520982 | None:intergenic | 25.0% |
| !! | GTGAGTATATTTGTATCTTT+TGG | - | chr1_1:57521049-57521068 | None:intergenic | 25.0% |
| ! | TTGAATATTGAAGGAGATTA+TGG | + | chr1_1:57521105-57521124 | Msa0030990:intron | 25.0% |
| ! | ACAATATTGCCTTCTATTAA+TGG | - | chr1_1:57521136-57521155 | None:intergenic | 25.0% |
| !!! | TCAAGTATGTTTTTTGTTGA+AGG | - | chr1_1:57521433-57521452 | None:intergenic | 25.0% |
| ! | CAATGAATTTCTGTTTAGAT+GGG | + | chr1_1:57521683-57521702 | Msa0030990:CDS | 25.0% |
| ! | TACAAATAACCCAACAATAT+TGG | + | chr1_1:57521810-57521829 | Msa0030990:CDS | 25.0% |
| ! | AATAATAAGGAAGATCAACA+AGG | + | chr1_1:57521847-57521866 | Msa0030990:CDS | 25.0% |
| ! | TTTCTTCTCTCTATTTCAAT+CGG | - | chr1_1:57522001-57522020 | None:intergenic | 25.0% |
| ! | TTATCAACAAGAATTAGTGA+TGG | + | chr1_1:57522034-57522053 | Msa0030990:three_prime_UTR | 25.0% |
| !! | AGAATTAGTGATGGAAAAAA+AGG | + | chr1_1:57522043-57522062 | Msa0030990:three_prime_UTR | 25.0% |
| ! | TAGTTTCTAAGTATTAGAGA+TGG | + | chr1_1:57522084-57522103 | Msa0030990:three_prime_UTR | 25.0% |
| !!! | TTTTTTATAGGAATGTGAGT+GGG | - | chr1_1:57520647-57520666 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAATTGAAAGG+TGG | - | chr1_1:57520693-57520712 | None:intergenic | 25.0% |
| ! | AAACTTATATGCAAAGTACA+TGG | - | chr1_1:57520874-57520893 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAACTTGTTGA+AGG | - | chr1_1:57520963-57520982 | None:intergenic | 25.0% |
| !! | GTGAGTATATTTGTATCTTT+TGG | - | chr1_1:57521049-57521068 | None:intergenic | 25.0% |
| ! | TTGAATATTGAAGGAGATTA+TGG | + | chr1_1:57521105-57521124 | Msa0030990:intron | 25.0% |
| ! | ACAATATTGCCTTCTATTAA+TGG | - | chr1_1:57521136-57521155 | None:intergenic | 25.0% |
| !!! | TCAAGTATGTTTTTTGTTGA+AGG | - | chr1_1:57521433-57521452 | None:intergenic | 25.0% |
| ! | CAATGAATTTCTGTTTAGAT+GGG | + | chr1_1:57521683-57521702 | Msa0030990:CDS | 25.0% |
| ! | TACAAATAACCCAACAATAT+TGG | + | chr1_1:57521810-57521829 | Msa0030990:CDS | 25.0% |
| ! | AATAATAAGGAAGATCAACA+AGG | + | chr1_1:57521847-57521866 | Msa0030990:CDS | 25.0% |
| ! | TTTCTTCTCTCTATTTCAAT+CGG | - | chr1_1:57522001-57522020 | None:intergenic | 25.0% |
| ! | TTATCAACAAGAATTAGTGA+TGG | + | chr1_1:57522034-57522053 | Msa0030990:three_prime_UTR | 25.0% |
| !! | AGAATTAGTGATGGAAAAAA+AGG | + | chr1_1:57522043-57522062 | Msa0030990:three_prime_UTR | 25.0% |
| ! | TAGTTTCTAAGTATTAGAGA+TGG | + | chr1_1:57522084-57522103 | Msa0030990:three_prime_UTR | 25.0% |
| ! | TTTTTATAGGAATGTGAGTG+GGG | - | chr1_1:57520646-57520665 | None:intergenic | 30.0% |
| !!! | GTTTTTTATAGGAATGTGAG+TGG | - | chr1_1:57520648-57520667 | None:intergenic | 30.0% |
| ! | AAGAAGATGATGATGATCAA+AGG | - | chr1_1:57520805-57520824 | None:intergenic | 30.0% |
| ! | ATGGATTAATTAGTTACCTG+AGG | - | chr1_1:57520855-57520874 | None:intergenic | 30.0% |
| TACATGTGAAAAACCTATGT+TGG | + | chr1_1:57521168-57521187 | Msa0030990:CDS | 30.0% | |
| GTGTTAATTGAATTACACCT+TGG | - | chr1_1:57521235-57521254 | None:intergenic | 30.0% | |
| ! | CATGTTTTGCAGAAATATCT+TGG | - | chr1_1:57521295-57521314 | None:intergenic | 30.0% |
| ATTTCTGCAAAACATGTAGA+AGG | + | chr1_1:57521299-57521318 | Msa0030990:CDS | 30.0% | |
| !! | TGACGGATTTGAAACAAAAT+TGG | - | chr1_1:57521410-57521429 | None:intergenic | 30.0% |
| !!! | ATGTTTTTTGTTGAAGGTGA+CGG | - | chr1_1:57521427-57521446 | None:intergenic | 30.0% |
| AAGGCCAAGATCTAAATTTA+GGG | + | chr1_1:57521485-57521504 | Msa0030990:CDS | 30.0% | |
| ACTTGCTTAAAATCTTGCAA+AGG | - | chr1_1:57521661-57521680 | None:intergenic | 30.0% | |
| CCATCTAAACAGAAATTCAT+TGG | - | chr1_1:57521685-57521704 | None:intergenic | 30.0% | |
| CCAATGAATTTCTGTTTAGA+TGG | + | chr1_1:57521682-57521701 | Msa0030990:CDS | 30.0% | |
| ACATGTTTCAAATCCTCAAA+AGG | - | chr1_1:57521784-57521803 | None:intergenic | 30.0% | |
| TAACCCAACAATATTGGATT+TGG | + | chr1_1:57521816-57521835 | Msa0030990:CDS | 30.0% | |
| GATCCAAATCCAATATTGTT+GGG | - | chr1_1:57521822-57521841 | None:intergenic | 30.0% | |
| TGATCCAAATCCAATATTGT+TGG | - | chr1_1:57521823-57521842 | None:intergenic | 30.0% | |
| ! | ATCAACAAGGATTTTCAACA+GGG | + | chr1_1:57521860-57521879 | Msa0030990:CDS | 30.0% |
| AGGATCATGGTAATTTACTT+AGG | + | chr1_1:57521912-57521931 | Msa0030990:exon | 30.0% | |
| AATTTACTTAGGAGAAGTCA+TGG | + | chr1_1:57521923-57521942 | Msa0030990:exon | 30.0% | |
| TTTATTCCACCAAGTAGAAT+CGG | - | chr1_1:57522223-57522242 | None:intergenic | 30.0% | |
| ! | TTTTTATAGGAATGTGAGTG+GGG | - | chr1_1:57520646-57520665 | None:intergenic | 30.0% |
| !!! | GTTTTTTATAGGAATGTGAG+TGG | - | chr1_1:57520648-57520667 | None:intergenic | 30.0% |
| ! | AAGAAGATGATGATGATCAA+AGG | - | chr1_1:57520805-57520824 | None:intergenic | 30.0% |
| ! | ATGGATTAATTAGTTACCTG+AGG | - | chr1_1:57520855-57520874 | None:intergenic | 30.0% |
| TACATGTGAAAAACCTATGT+TGG | + | chr1_1:57521168-57521187 | Msa0030990:CDS | 30.0% | |
| GTGTTAATTGAATTACACCT+TGG | - | chr1_1:57521235-57521254 | None:intergenic | 30.0% | |
| ! | CATGTTTTGCAGAAATATCT+TGG | - | chr1_1:57521295-57521314 | None:intergenic | 30.0% |
| ATTTCTGCAAAACATGTAGA+AGG | + | chr1_1:57521299-57521318 | Msa0030990:CDS | 30.0% | |
| !! | TGACGGATTTGAAACAAAAT+TGG | - | chr1_1:57521410-57521429 | None:intergenic | 30.0% |
| !!! | ATGTTTTTTGTTGAAGGTGA+CGG | - | chr1_1:57521427-57521446 | None:intergenic | 30.0% |
| AAGGCCAAGATCTAAATTTA+GGG | + | chr1_1:57521485-57521504 | Msa0030990:CDS | 30.0% | |
| ACTTGCTTAAAATCTTGCAA+AGG | - | chr1_1:57521661-57521680 | None:intergenic | 30.0% | |
| CCATCTAAACAGAAATTCAT+TGG | - | chr1_1:57521685-57521704 | None:intergenic | 30.0% | |
| CCAATGAATTTCTGTTTAGA+TGG | + | chr1_1:57521682-57521701 | Msa0030990:CDS | 30.0% | |
| ACATGTTTCAAATCCTCAAA+AGG | - | chr1_1:57521784-57521803 | None:intergenic | 30.0% | |
| TAACCCAACAATATTGGATT+TGG | + | chr1_1:57521816-57521835 | Msa0030990:CDS | 30.0% | |
| GATCCAAATCCAATATTGTT+GGG | - | chr1_1:57521822-57521841 | None:intergenic | 30.0% | |
| TGATCCAAATCCAATATTGT+TGG | - | chr1_1:57521823-57521842 | None:intergenic | 30.0% | |
| ! | ATCAACAAGGATTTTCAACA+GGG | + | chr1_1:57521860-57521879 | Msa0030990:CDS | 30.0% |
| AGGATCATGGTAATTTACTT+AGG | + | chr1_1:57521912-57521931 | Msa0030990:exon | 30.0% | |
| AATTTACTTAGGAGAAGTCA+TGG | + | chr1_1:57521923-57521942 | Msa0030990:exon | 30.0% | |
| TTTATTCCACCAAGTAGAAT+CGG | - | chr1_1:57522223-57522242 | None:intergenic | 30.0% | |
| GATCAAAGGATGAAGTTGAA+AGG | - | chr1_1:57520791-57520810 | None:intergenic | 35.0% | |
| TCATCTTCTTCATCAATCCA+TGG | + | chr1_1:57520815-57520834 | Msa0030990:exon | 35.0% | |
| ATGGTGAAGCCATTAATAGA+AGG | + | chr1_1:57521124-57521143 | Msa0030990:CDS | 35.0% | |
| GTGAAAAACCTATGTTGGAA+AGG | + | chr1_1:57521173-57521192 | Msa0030990:CDS | 35.0% | |
| !! | GCTTCTTGTTTCTGTTGATT+TGG | - | chr1_1:57521202-57521221 | None:intergenic | 35.0% |
| AAGAAGCAATTAACTGTCCA+AGG | + | chr1_1:57521215-57521234 | Msa0030990:CDS | 35.0% | |
| ! | GCAAAACATGTAGAAGGTAT+TGG | + | chr1_1:57521305-57521324 | Msa0030990:CDS | 35.0% |
| TCCATTAGAAACATTCCTGT+TGG | + | chr1_1:57521340-57521359 | Msa0030990:CDS | 35.0% | |
| ! | ACCAACAGGAATGTTTCTAA+TGG | - | chr1_1:57521344-57521363 | None:intergenic | 35.0% |
| ATTAGAAACATTCCTGTTGG+TGG | + | chr1_1:57521343-57521362 | Msa0030990:CDS | 35.0% | |
| !!! | CATGATGGATCTTATGGTTT+TGG | - | chr1_1:57521462-57521481 | None:intergenic | 35.0% |
| !! | CTTCTTCATGATGGATCTTA+TGG | - | chr1_1:57521468-57521487 | None:intergenic | 35.0% |
| CATAAGATCCATCATGAAGA+AGG | + | chr1_1:57521466-57521485 | Msa0030990:CDS | 35.0% | |
| GAAGGCCAAGATCTAAATTT+AGG | + | chr1_1:57521484-57521503 | Msa0030990:CDS | 35.0% | |
| GGAACCCTAAATTTAGATCT+TGG | - | chr1_1:57521492-57521511 | None:intergenic | 35.0% | |
| CCAAATGATCAGATATGTGA+GGG | - | chr1_1:57521513-57521532 | None:intergenic | 35.0% | |
| ACCAAATGATCAGATATGTG+AGG | - | chr1_1:57521514-57521533 | None:intergenic | 35.0% | |
| TTCTTCTACTTCTTCAGCAT+TGG | + | chr1_1:57521555-57521574 | Msa0030990:CDS | 35.0% | |
| ! | AGGTTTGAGTTCAAGTTCAA+GGG | + | chr1_1:57521591-57521610 | Msa0030990:CDS | 35.0% |
| TATGCAAGTACTCTTGATCA+TGG | + | chr1_1:57521721-57521740 | Msa0030990:CDS | 35.0% | |
| GTTCAAGAGACAATTAGTGA+AGG | + | chr1_1:57521745-57521764 | Msa0030990:CDS | 35.0% | |
| AAGAGACAATTAGTGAAGGA+AGG | + | chr1_1:57521749-57521768 | Msa0030990:CDS | 35.0% | |
| AGAGACAATTAGTGAAGGAA+GGG | + | chr1_1:57521750-57521769 | Msa0030990:CDS | 35.0% | |
| !!! | AAGGGTTTTGTTTCCTTTTG+AGG | + | chr1_1:57521768-57521787 | Msa0030990:CDS | 35.0% |
| ! | GATCAACAAGGATTTTCAAC+AGG | + | chr1_1:57521859-57521878 | Msa0030990:CDS | 35.0% |
| ! | AAGGATTTTCAACAGGGATT+TGG | + | chr1_1:57521866-57521885 | Msa0030990:CDS | 35.0% |
| GATCAAAGGATGAAGTTGAA+AGG | - | chr1_1:57520791-57520810 | None:intergenic | 35.0% | |
| TCATCTTCTTCATCAATCCA+TGG | + | chr1_1:57520815-57520834 | Msa0030990:exon | 35.0% | |
| ATGGTGAAGCCATTAATAGA+AGG | + | chr1_1:57521124-57521143 | Msa0030990:CDS | 35.0% | |
| GTGAAAAACCTATGTTGGAA+AGG | + | chr1_1:57521173-57521192 | Msa0030990:CDS | 35.0% | |
| !! | GCTTCTTGTTTCTGTTGATT+TGG | - | chr1_1:57521202-57521221 | None:intergenic | 35.0% |
| AAGAAGCAATTAACTGTCCA+AGG | + | chr1_1:57521215-57521234 | Msa0030990:CDS | 35.0% | |
| ! | GCAAAACATGTAGAAGGTAT+TGG | + | chr1_1:57521305-57521324 | Msa0030990:CDS | 35.0% |
| TCCATTAGAAACATTCCTGT+TGG | + | chr1_1:57521340-57521359 | Msa0030990:CDS | 35.0% | |
| ! | ACCAACAGGAATGTTTCTAA+TGG | - | chr1_1:57521344-57521363 | None:intergenic | 35.0% |
| ATTAGAAACATTCCTGTTGG+TGG | + | chr1_1:57521343-57521362 | Msa0030990:CDS | 35.0% | |
| !!! | CATGATGGATCTTATGGTTT+TGG | - | chr1_1:57521462-57521481 | None:intergenic | 35.0% |
| !! | CTTCTTCATGATGGATCTTA+TGG | - | chr1_1:57521468-57521487 | None:intergenic | 35.0% |
| CATAAGATCCATCATGAAGA+AGG | + | chr1_1:57521466-57521485 | Msa0030990:CDS | 35.0% | |
| GAAGGCCAAGATCTAAATTT+AGG | + | chr1_1:57521484-57521503 | Msa0030990:CDS | 35.0% | |
| GGAACCCTAAATTTAGATCT+TGG | - | chr1_1:57521492-57521511 | None:intergenic | 35.0% | |
| CCAAATGATCAGATATGTGA+GGG | - | chr1_1:57521513-57521532 | None:intergenic | 35.0% | |
| ACCAAATGATCAGATATGTG+AGG | - | chr1_1:57521514-57521533 | None:intergenic | 35.0% | |
| TTCTTCTACTTCTTCAGCAT+TGG | + | chr1_1:57521555-57521574 | Msa0030990:CDS | 35.0% | |
| ! | AGGTTTGAGTTCAAGTTCAA+GGG | + | chr1_1:57521591-57521610 | Msa0030990:CDS | 35.0% |
| TATGCAAGTACTCTTGATCA+TGG | + | chr1_1:57521721-57521740 | Msa0030990:CDS | 35.0% | |
| GTTCAAGAGACAATTAGTGA+AGG | + | chr1_1:57521745-57521764 | Msa0030990:CDS | 35.0% | |
| AAGAGACAATTAGTGAAGGA+AGG | + | chr1_1:57521749-57521768 | Msa0030990:CDS | 35.0% | |
| AGAGACAATTAGTGAAGGAA+GGG | + | chr1_1:57521750-57521769 | Msa0030990:CDS | 35.0% | |
| !!! | AAGGGTTTTGTTTCCTTTTG+AGG | + | chr1_1:57521768-57521787 | Msa0030990:CDS | 35.0% |
| ! | GATCAACAAGGATTTTCAAC+AGG | + | chr1_1:57521859-57521878 | Msa0030990:CDS | 35.0% |
| ! | AAGGATTTTCAACAGGGATT+TGG | + | chr1_1:57521866-57521885 | Msa0030990:CDS | 35.0% |
| GTGGTGCAGAAGTAGAAAAA+GGG | - | chr1_1:57520674-57520693 | None:intergenic | 40.0% | |
| AGAGAGAAAGAGAGAGAGAA+AGG | - | chr1_1:57520735-57520754 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCTTTCCAACAT+AGG | - | chr1_1:57521184-57521203 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTCA+AGG | + | chr1_1:57521313-57521332 | Msa0030990:CDS | 40.0% |
| CCCTCACATATCTGATCATT+TGG | + | chr1_1:57521510-57521529 | Msa0030990:CDS | 40.0% | |
| ! | CAGGTTTGAGTTCAAGTTCA+AGG | + | chr1_1:57521590-57521609 | Msa0030990:CDS | 40.0% |
| TTCTGTTTAGATGGGATCTC+AGG | + | chr1_1:57521691-57521710 | Msa0030990:CDS | 40.0% | |
| ! | TTTTCAACAGGGATTTGGAC+TGG | + | chr1_1:57521871-57521890 | Msa0030990:CDS | 40.0% |
| ! | GGTAATTAGCCGATTCTACT+TGG | + | chr1_1:57522211-57522230 | Msa0030990:three_prime_UTR | 40.0% |
| ! | AATTAGCCGATTCTACTTGG+TGG | + | chr1_1:57522214-57522233 | Msa0030990:three_prime_UTR | 40.0% |
| GTGGTGCAGAAGTAGAAAAA+GGG | - | chr1_1:57520674-57520693 | None:intergenic | 40.0% | |
| AGAGAGAAAGAGAGAGAGAA+AGG | - | chr1_1:57520735-57520754 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCTTTCCAACAT+AGG | - | chr1_1:57521184-57521203 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTCA+AGG | + | chr1_1:57521313-57521332 | Msa0030990:CDS | 40.0% |
| CCCTCACATATCTGATCATT+TGG | + | chr1_1:57521510-57521529 | Msa0030990:CDS | 40.0% | |
| ! | CAGGTTTGAGTTCAAGTTCA+AGG | + | chr1_1:57521590-57521609 | Msa0030990:CDS | 40.0% |
| TTCTGTTTAGATGGGATCTC+AGG | + | chr1_1:57521691-57521710 | Msa0030990:CDS | 40.0% | |
| ! | TTTTCAACAGGGATTTGGAC+TGG | + | chr1_1:57521871-57521890 | Msa0030990:CDS | 40.0% |
| ! | GGTAATTAGCCGATTCTACT+TGG | + | chr1_1:57522211-57522230 | Msa0030990:three_prime_UTR | 40.0% |
| ! | AATTAGCCGATTCTACTTGG+TGG | + | chr1_1:57522214-57522233 | Msa0030990:three_prime_UTR | 40.0% |
| GGTCTTACTATGTGAACGGT+TGG | - | chr1_1:57520622-57520641 | None:intergenic | 45.0% | |
| TTATAGGAATGTGAGTGGGG+CGG | - | chr1_1:57520643-57520662 | None:intergenic | 45.0% | |
| GGTGGTGCAGAAGTAGAAAA+AGG | - | chr1_1:57520675-57520694 | None:intergenic | 45.0% | |
| AATCCATGGACACAGCTCAA+TGG | + | chr1_1:57520829-57520848 | Msa0030990:exon | 45.0% | |
| !! | AGAAGGTATTGGACTCAAGG+TGG | + | chr1_1:57521316-57521335 | Msa0030990:CDS | 45.0% |
| ! | AGAAACATTCCTGTTGGTGG+TGG | + | chr1_1:57521346-57521365 | Msa0030990:CDS | 45.0% |
| ! | GATCTTGGCCTTCTTCATGA+TGG | - | chr1_1:57521477-57521496 | None:intergenic | 45.0% |
| TTCATGCCTGCTCAAGTTCA+AGG | + | chr1_1:57521625-57521644 | Msa0030990:CDS | 45.0% | |
| TTAGATGGGATCTCAGGAAG+TGG | + | chr1_1:57521697-57521716 | Msa0030990:CDS | 45.0% | |
| ! | AGGGATTTGGACTGGAATGT+TGG | + | chr1_1:57521879-57521898 | Msa0030990:CDS | 45.0% |
| ! | GGGATTTGGACTGGAATGTT+GGG | + | chr1_1:57521880-57521899 | Msa0030990:CDS | 45.0% |
| ! | ATTTGGACTGGAATGTTGGG+AGG | + | chr1_1:57521883-57521902 | Msa0030990:CDS | 45.0% |
| ! | TGACGTCTTTTCGAACACCT+AGG | + | chr1_1:57522178-57522197 | Msa0030990:three_prime_UTR | 45.0% |
| ! | AATTACCTTGACGCTAGCCT+AGG | - | chr1_1:57522198-57522217 | None:intergenic | 45.0% |
| GGTCTTACTATGTGAACGGT+TGG | - | chr1_1:57520622-57520641 | None:intergenic | 45.0% | |
| TTATAGGAATGTGAGTGGGG+CGG | - | chr1_1:57520643-57520662 | None:intergenic | 45.0% | |
| GGTGGTGCAGAAGTAGAAAA+AGG | - | chr1_1:57520675-57520694 | None:intergenic | 45.0% | |
| AATCCATGGACACAGCTCAA+TGG | + | chr1_1:57520829-57520848 | Msa0030990:exon | 45.0% | |
| !! | AGAAGGTATTGGACTCAAGG+TGG | + | chr1_1:57521316-57521335 | Msa0030990:CDS | 45.0% |
| ! | AGAAACATTCCTGTTGGTGG+TGG | + | chr1_1:57521346-57521365 | Msa0030990:CDS | 45.0% |
| ! | GATCTTGGCCTTCTTCATGA+TGG | - | chr1_1:57521477-57521496 | None:intergenic | 45.0% |
| TTCATGCCTGCTCAAGTTCA+AGG | + | chr1_1:57521625-57521644 | Msa0030990:CDS | 45.0% | |
| TTAGATGGGATCTCAGGAAG+TGG | + | chr1_1:57521697-57521716 | Msa0030990:CDS | 45.0% | |
| ! | AGGGATTTGGACTGGAATGT+TGG | + | chr1_1:57521879-57521898 | Msa0030990:CDS | 45.0% |
| ! | GGGATTTGGACTGGAATGTT+GGG | + | chr1_1:57521880-57521899 | Msa0030990:CDS | 45.0% |
| ! | ATTTGGACTGGAATGTTGGG+AGG | + | chr1_1:57521883-57521902 | Msa0030990:CDS | 45.0% |
| ! | TGACGTCTTTTCGAACACCT+AGG | + | chr1_1:57522178-57522197 | Msa0030990:three_prime_UTR | 45.0% |
| ! | AATTACCTTGACGCTAGCCT+AGG | - | chr1_1:57522198-57522217 | None:intergenic | 45.0% |
| GGGCGGTCTTACTATGTGAA+CGG | - | chr1_1:57520626-57520645 | None:intergenic | 50.0% | |
| !! | TTCCTGTTGGTGGTGGTTCT+AGG | + | chr1_1:57521353-57521372 | Msa0030990:CDS | 50.0% |
| TTCCTAGAACCACCACCAAC+AGG | - | chr1_1:57521358-57521377 | None:intergenic | 50.0% | |
| GCATTGGAGCTTCTTACTGC+AGG | + | chr1_1:57521571-57521590 | Msa0030990:CDS | 50.0% | |
| CCACAACCTTGAACTTGAGC+AGG | - | chr1_1:57521634-57521653 | None:intergenic | 50.0% | |
| CCTGCTCAAGTTCAAGGTTG+TGG | + | chr1_1:57521631-57521650 | Msa0030990:CDS | 50.0% | |
| GGGCGGTCTTACTATGTGAA+CGG | - | chr1_1:57520626-57520645 | None:intergenic | 50.0% | |
| !! | TTCCTGTTGGTGGTGGTTCT+AGG | + | chr1_1:57521353-57521372 | Msa0030990:CDS | 50.0% |
| TTCCTAGAACCACCACCAAC+AGG | - | chr1_1:57521358-57521377 | None:intergenic | 50.0% | |
| GCATTGGAGCTTCTTACTGC+AGG | + | chr1_1:57521571-57521590 | Msa0030990:CDS | 50.0% | |
| CCACAACCTTGAACTTGAGC+AGG | - | chr1_1:57521634-57521653 | None:intergenic | 50.0% | |
| CCTGCTCAAGTTCAAGGTTG+TGG | + | chr1_1:57521631-57521650 | Msa0030990:CDS | 50.0% | |
| AGGCCATTGAGCTGTGTCCA+TGG | - | chr1_1:57520835-57520854 | None:intergenic | 55.0% | |
| ! | TGGACTGGAATGTTGGGAGG+AGG | + | chr1_1:57521886-57521905 | Msa0030990:CDS | 55.0% |
| ACTGGAATGTTGGGAGGAGG+AGG | + | chr1_1:57521889-57521908 | Msa0030990:CDS | 55.0% | |
| GAACACCTAGGCTAGCGTCA+AGG | + | chr1_1:57522190-57522209 | Msa0030990:three_prime_UTR | 55.0% | |
| AGGCCATTGAGCTGTGTCCA+TGG | - | chr1_1:57520835-57520854 | None:intergenic | 55.0% | |
| ! | TGGACTGGAATGTTGGGAGG+AGG | + | chr1_1:57521886-57521905 | Msa0030990:CDS | 55.0% |
| ACTGGAATGTTGGGAGGAGG+AGG | + | chr1_1:57521889-57521908 | Msa0030990:CDS | 55.0% | |
| GAACACCTAGGCTAGCGTCA+AGG | + | chr1_1:57522190-57522209 | Msa0030990:three_prime_UTR | 55.0% | |
| GGACACAGCTCAATGGCCTC+AGG | + | chr1_1:57520836-57520855 | Msa0030990:CDS | 60.0% | |
| GGAATGTTGGGAGGAGGAGG+AGG | + | chr1_1:57521892-57521911 | Msa0030990:CDS | 60.0% | |
| TGGGAGGAGGAGGAGGATCA+TGG | + | chr1_1:57521899-57521918 | Msa0030990:CDS | 60.0% | |
| GGACACAGCTCAATGGCCTC+AGG | + | chr1_1:57520836-57520855 | Msa0030990:CDS | 60.0% | |
| GGAATGTTGGGAGGAGGAGG+AGG | + | chr1_1:57521892-57521911 | Msa0030990:CDS | 60.0% | |
| TGGGAGGAGGAGGAGGATCA+TGG | + | chr1_1:57521899-57521918 | Msa0030990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57520608 | 57522344 | 57520608 | ID=Msa0030990;Name=Msa0030990 |
| chr1_1 | mRNA | 57520608 | 57522344 | 57520608 | ID=Msa0030990-mRNA-1;Parent=Msa0030990;Name=Msa0030990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=226|1|1|1|1|1|2|420|276 |
| chr1_1 | exon | 57520608 | 57520857 | 57520608 | ID=Msa0030990-mRNA-1:exon:17384;Parent=Msa0030990-mRNA-1 |
| chr1_1 | exon | 57521118 | 57522344 | 57521118 | ID=Msa0030990-mRNA-1:exon:17385;Parent=Msa0030990-mRNA-1 |
| chr1_1 | five_prime_UTR | 57520608 | 57520833 | 57520608 | ID=Msa0030990-mRNA-1:five_prime_utr;Parent=Msa0030990-mRNA-1 |
| chr1_1 | CDS | 57520834 | 57520857 | 57520834 | ID=Msa0030990-mRNA-1:cds;Parent=Msa0030990-mRNA-1 |
| chr1_1 | CDS | 57521118 | 57521924 | 57521118 | ID=Msa0030990-mRNA-1:cds;Parent=Msa0030990-mRNA-1 |
| chr1_1 | three_prime_UTR | 57521925 | 57522344 | 57521925 | ID=Msa0030990-mRNA-1:three_prime_utr;Parent=Msa0030990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
