Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579500 | XP_013446785.1 | 91.575 | 273 | 19 | 1 | 1 | 273 | 1 | 269 | 1.06e-180 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579500 | A0A072TTP9 | 91.575 | 273 | 19 | 1 | 1 | 273 | 1 | 269 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023330 | Msa0579500 | 0.807303 | 5.400229e-50 | -8.615850e-47 |
| Msa0043500 | Msa0579500 | 0.803885 | 2.816194e-49 | -8.615850e-47 |
| Msa0077900 | Msa0579500 | 0.812561 | 3.985738e-51 | -8.615850e-47 |
| Msa0111080 | Msa0579500 | 0.827940 | 1.185023e-54 | -8.615850e-47 |
| Msa0154920 | Msa0579500 | 0.830101 | 3.550082e-55 | -8.615850e-47 |
| Msa0187490 | Msa0579500 | 0.807236 | 5.579265e-50 | -8.615850e-47 |
| Msa0237200 | Msa0579500 | 0.815426 | 9.300635e-52 | -8.615850e-47 |
| Msa0378970 | Msa0579500 | 0.808113 | 3.632912e-50 | -8.615850e-47 |
| Msa0387050 | Msa0579500 | 0.810123 | 1.347575e-50 | -8.615850e-47 |
| Msa0432160 | Msa0579500 | 0.803131 | 4.035524e-49 | -8.615850e-47 |
| Msa0476680 | Msa0579500 | 0.804751 | 1.858576e-49 | -8.615850e-47 |
| Msa0274970 | Msa0579500 | 0.814894 | 1.221036e-51 | -8.615850e-47 |
| Msa0290760 | Msa0579500 | 0.802121 | 6.518694e-49 | -8.615850e-47 |
| Msa0311720 | Msa0579500 | 0.820416 | 6.940407e-53 | -8.615850e-47 |
| Msa0315680 | Msa0579500 | 0.813082 | 3.065039e-51 | -8.615850e-47 |
| Msa0483740 | Msa0579500 | 0.803697 | 3.080597e-49 | -8.615850e-47 |
| Msa0518440 | Msa0579500 | 0.804723 | 1.884107e-49 | -8.615850e-47 |
| Msa0521010 | Msa0579500 | 0.806422 | 8.289283e-50 | -8.615850e-47 |
| Msa0567240 | Msa0579500 | 0.870354 | 1.554786e-66 | -8.615850e-47 |
| Msa0579500 | Msa0614510 | 0.800657 | 1.300408e-48 | -8.615850e-47 |
| Msa0579500 | Msa0705390 | 0.808649 | 2.792063e-50 | -8.615850e-47 |
| Msa0579500 | Msa0738440 | 0.805047 | 1.612008e-49 | -8.615850e-47 |
| Msa0579500 | Msa0749440 | 0.822302 | 2.547663e-53 | -8.615850e-47 |
| Msa0579500 | Msa0821190 | 0.801296 | 9.629333e-49 | -8.615850e-47 |
| Msa0579500 | Msa0980020 | 0.806889 | 6.606702e-50 | -8.615850e-47 |
| Msa0579500 | Msa1089320 | 0.816145 | 6.430263e-52 | -8.615850e-47 |
| Msa0579500 | Msa1204530 | 0.802375 | 5.778981e-49 | -8.615850e-47 |
| Msa0579500 | Msa1208580 | 0.804814 | 1.803095e-49 | -8.615850e-47 |
| Msa0579500 | Msa1270660 | 0.804138 | 2.493905e-49 | -8.615850e-47 |
| Msa0579500 | Msa1364210 | 0.817275 | 3.587967e-52 | -8.615850e-47 |
| Msa0579500 | Msa1371940 | 0.823511 | 1.331881e-53 | -8.615850e-47 |
| Msa0579500 | Msa1376130 | 0.800426 | 1.449191e-48 | -8.615850e-47 |
| Msa0579500 | Msa1389850 | 0.800130 | 1.665140e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579500 | MtrunA17_Chr8g0382051 | 91.575 | 273 | 19 | 1 | 1 | 273 | 1 | 269 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579500 | AT3G57360.1 | 47.303 | 241 | 117 | 5 | 34 | 272 | 21 | 253 | 1.11e-71 | 221 |
| Msa0579500 | AT3G02370.4 | 44.550 | 211 | 110 | 3 | 64 | 273 | 1 | 205 | 1.25e-59 | 188 |
| Msa0579500 | AT3G02370.2 | 44.550 | 211 | 110 | 3 | 64 | 273 | 1 | 205 | 1.25e-59 | 188 |
| Msa0579500 | AT3G02370.3 | 44.550 | 211 | 110 | 3 | 64 | 273 | 1 | 205 | 1.25e-59 | 188 |
| Msa0579500 | AT3G02370.1 | 45.455 | 165 | 84 | 2 | 64 | 227 | 1 | 160 | 1.15e-45 | 151 |
Find 103 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACTGGATTGTGATTT+TGG | 0.090434 | 4_1:-84231454 | Msa0579500:three_prime_UTR |
| ACAGCTTTCTTTCACATTAT+TGG | 0.097592 | 4_1:+84231523 | None:intergenic |
| TACCTTCGGTTCCTTTATTT+TGG | 0.164017 | 4_1:+84234460 | None:intergenic |
| TTGACCACATGCTACTAAAT+TGG | 0.197110 | 4_1:+84234483 | None:intergenic |
| AAGTCTCTCGGCTACATAAT+TGG | 0.212462 | 4_1:-84232795 | Msa0579500:CDS |
| CTCTTCATTCCATCTGGCTT+TGG | 0.237765 | 4_1:+84233317 | None:intergenic |
| GACAAGCACAGCAGAAAATT+TGG | 0.239630 | 4_1:+84232555 | None:intergenic |
| TTAACTTGGCAGGTATCTTA+TGG | 0.241091 | 4_1:-84232943 | Msa0579500:intron |
| AACCCTTGTTCTTGAATATC+AGG | 0.246191 | 4_1:-84234345 | Msa0579500:intron |
| GAAATGTACGAAAAGGTTTC+TGG | 0.246659 | 4_1:-84232867 | Msa0579500:CDS |
| CTTTGCCCAAATCGCAATTC+AGG | 0.274999 | 4_1:-84234106 | Msa0579500:intron |
| TTCAAAGTTACTCTTGTTCC+TGG | 0.313127 | 4_1:-84234398 | Msa0579500:five_prime_UTR |
| ATAATTGATATCAACTGTTC+AGG | 0.318010 | 4_1:+84231617 | None:intergenic |
| CTTTCCGTAAGCAAGTTATT+TGG | 0.319572 | 4_1:-84232660 | Msa0579500:CDS |
| TTTGACCTGAATTGCGATTT+GGG | 0.324555 | 4_1:+84234101 | None:intergenic |
| GACAATTTCTTGTTTACCTT+CGG | 0.327937 | 4_1:+84234446 | None:intergenic |
| TCCCATCTCTTCATTCCATC+TGG | 0.337819 | 4_1:+84233311 | None:intergenic |
| GAATAAGAAAATTATTTAGT+TGG | 0.370125 | 4_1:-84231316 | Msa0579500:three_prime_UTR |
| GTTCTATCGCCGCCGTAGTT+TGG | 0.372048 | 4_1:+84234424 | None:intergenic |
| GCTTCAATTTCTTCTCTAGA+AGG | 0.386301 | 4_1:+84231741 | None:intergenic |
| AAGAAAATTATTTAGTTGGA+TGG | 0.389099 | 4_1:-84231312 | Msa0579500:three_prime_UTR |
| ATGATAACCTGCGCTACAAA+TGG | 0.392220 | 4_1:-84231487 | Msa0579500:three_prime_UTR |
| GGAAGATAAATATCAAAATC+TGG | 0.393325 | 4_1:+84232612 | None:intergenic |
| ATTTCAATGACAGTTTGAAT+TGG | 0.399838 | 4_1:-84231200 | Msa0579500:three_prime_UTR |
| AGTCTCTCGGCTACATAATT+GGG | 0.429657 | 4_1:-84232794 | Msa0579500:CDS |
| GCTTACGGAAAGCTCGACTT+TGG | 0.433113 | 4_1:+84232671 | None:intergenic |
| TTCGCTGTCTATGAGATGTA+AGG | 0.442421 | 4_1:+84232911 | None:intergenic |
| TCAACAAAGTTATCATCAAA+TGG | 0.454628 | 4_1:-84234529 | Msa0579500:five_prime_UTR |
| AGCAGAAAATTTGGATCACC+TGG | 0.456168 | 4_1:+84232564 | None:intergenic |
| TTTATGATGTTATAGACGAC+AGG | 0.459378 | 4_1:-84231339 | Msa0579500:three_prime_UTR |
| CAGGAAGACCGGATGTTGTT+GGG | 0.466673 | 4_1:-84232844 | Msa0579500:CDS |
| GGAACAAGAGTAACTTTGAA+AGG | 0.466970 | 4_1:+84234401 | None:intergenic |
| CTCACCAAATAACTTGCTTA+CGG | 0.471346 | 4_1:+84232656 | None:intergenic |
| CAGTTTCTTTCCCTTTGACA+AGG | 0.472569 | 4_1:-84231658 | Msa0579500:CDS |
| GGGAGCTGTTCGAGGCCTAC+AGG | 0.479326 | 4_1:-84232824 | Msa0579500:CDS |
| GAACAGCTCCCAACAACATC+CGG | 0.481581 | 4_1:+84232836 | None:intergenic |
| AGAAAATTATTTAGTTGGAT+GGG | 0.482353 | 4_1:-84231311 | Msa0579500:three_prime_UTR |
| ATGTTGTTGGGAGCTGTTCG+AGG | 0.483585 | 4_1:-84232832 | Msa0579500:CDS |
| GCAGAGGTTATTGAGAAGAA+TGG | 0.485595 | 4_1:-84233285 | Msa0579500:CDS |
| TGGGCTCAGTGATCACAAAC+TGG | 0.485634 | 4_1:-84231467 | Msa0579500:three_prime_UTR |
| GCAGGAAGACCGGATGTTGT+TGG | 0.493458 | 4_1:-84232845 | Msa0579500:CDS |
| TATAATAGAAATGTACGAAA+AGG | 0.493873 | 4_1:-84232874 | Msa0579500:CDS |
| AGCCAGATGGAATGAAGAGA+TGG | 0.498558 | 4_1:-84233313 | Msa0579500:CDS |
| AAGGTTTCTGGCAGGAAGAC+CGG | 0.499823 | 4_1:-84232855 | Msa0579500:CDS |
| TTGGGCGGCATAATGTTGCT+TGG | 0.506016 | 4_1:-84232776 | Msa0579500:CDS |
| CATGTGGTCAACCAAAATAA+AGG | 0.507426 | 4_1:-84234471 | Msa0579500:five_prime_UTR |
| GAACAAGAGTAACTTTGAAA+GGG | 0.507470 | 4_1:+84234402 | None:intergenic |
| ATTTCCACTCTGAGCTAAAG+AGG | 0.519666 | 4_1:-84231592 | Msa0579500:three_prime_UTR |
| TGAAGAGATGGGAATGGCAG+AGG | 0.522087 | 4_1:-84233301 | Msa0579500:CDS |
| TCAACTGTTCAGGGTAGAGC+AGG | 0.523816 | 4_1:+84231627 | None:intergenic |
| AGGAAGTTCAACCTTGTCAA+AGG | 0.524372 | 4_1:+84231647 | None:intergenic |
| TGATAACCTGCGCTACAAAT+GGG | 0.525231 | 4_1:-84231486 | Msa0579500:three_prime_UTR |
| ACTGAGCCCATTTGTAGCGC+AGG | 0.527267 | 4_1:+84231480 | None:intergenic |
| GTAATAAATTGGGTAATGCA+TGG | 0.537975 | 4_1:-84231257 | Msa0579500:three_prime_UTR |
| TAATTGATATCAACTGTTCA+GGG | 0.540941 | 4_1:+84231618 | None:intergenic |
| ATTAATGGAAGGAAACAAGT+GGG | 0.544553 | 4_1:-84234237 | Msa0579500:exon |
| GGAAGTTCAACCTTGTCAAA+GGG | 0.547715 | 4_1:+84231648 | None:intergenic |
| TAATAAATTGGGTAATGCAT+GGG | 0.562318 | 4_1:-84231256 | Msa0579500:three_prime_UTR |
| AGGTTCAGAAAATCTTCTCC+AGG | 0.564329 | 4_1:-84232582 | Msa0579500:CDS |
| TCTGCCTGGTCACAGAAGGA+AGG | 0.565898 | 4_1:-84231683 | Msa0579500:CDS |
| TGACCCTTCCTTCTGTGACC+AGG | 0.571599 | 4_1:+84231679 | None:intergenic |
| ACAACATCACAATCACCTGC+AGG | 0.573998 | 4_1:+84231415 | None:intergenic |
| ATGGAATGAAGAGATGGGAA+TGG | 0.574705 | 4_1:-84233307 | Msa0579500:CDS |
| ATGATAGTAGAATAATCTGT+AGG | 0.576286 | 4_1:-84231548 | Msa0579500:three_prime_UTR |
| AAAATCTGCCTGGTCACAGA+AGG | 0.579328 | 4_1:-84231687 | Msa0579500:CDS |
| GCCAGATGGAATGAAGAGAT+GGG | 0.580713 | 4_1:-84233312 | Msa0579500:CDS |
| AAGCAAACAAATAGTAGACA+TGG | 0.583081 | 4_1:-84232697 | Msa0579500:CDS |
| TTTCCACTCTGAGCTAAAGA+GGG | 0.588374 | 4_1:-84231591 | Msa0579500:three_prime_UTR |
| ACGTCAAATCCAAAGCCAGA+TGG | 0.589896 | 4_1:-84233326 | Msa0579500:CDS |
| ATATTTATCTTCCAGACAGT+AGG | 0.589908 | 4_1:-84232602 | Msa0579500:CDS |
| CTCTCGGCTACATAATTGGG+CGG | 0.591627 | 4_1:-84232791 | Msa0579500:CDS |
| GGCAGGTATCTTATGGAACT+AGG | 0.591792 | 4_1:-84232936 | Msa0579500:intron |
| CTTTCCAATTTAGTAGCATG+TGG | 0.594892 | 4_1:-84234487 | Msa0579500:five_prime_UTR |
| TACAGGCACCTCAAGTCTCT+CGG | 0.595258 | 4_1:-84232807 | Msa0579500:CDS |
| CAAAGTGATCACAAACCTGC+AGG | 0.595322 | 4_1:-84231430 | Msa0579500:three_prime_UTR |
| CTGCCTGGTCACAGAAGGAA+GGG | 0.600913 | 4_1:-84231682 | Msa0579500:CDS |
| AACCAAAATAAAGGAACCGA+AGG | 0.601306 | 4_1:-84234462 | Msa0579500:five_prime_UTR |
| TTTCCCTCTTTAGCTCAGAG+TGG | 0.602904 | 4_1:+84231588 | None:intergenic |
| GATTCCGTTGAAAATCTGCC+TGG | 0.603900 | 4_1:-84231697 | Msa0579500:CDS |
| ACAAGAAATTGTCCAAACTA+CGG | 0.606244 | 4_1:-84234436 | Msa0579500:five_prime_UTR |
| GATTAATGGAAGGAAACAAG+TGG | 0.610317 | 4_1:-84234238 | Msa0579500:exon |
| TGTACGAAAAGGTTTCTGGC+AGG | 0.610565 | 4_1:-84232863 | Msa0579500:CDS |
| TAGCAAGAAACTGAAGGCAA+TGG | 0.617206 | 4_1:-84231386 | Msa0579500:three_prime_UTR |
| AAAGAAAGCTGTGGAAGTTG+TGG | 0.630880 | 4_1:-84231512 | Msa0579500:three_prime_UTR |
| AAGAATGAGATGTGAAGCGA+AGG | 0.634517 | 4_1:+84234126 | None:intergenic |
| CAAGATTTATACTTCAATCG+AGG | 0.638560 | 4_1:-84233226 | Msa0579500:CDS |
| GAACCTGATATTCAAGAACA+AGG | 0.638915 | 4_1:+84234342 | None:intergenic |
| GCTCTTGAGAAACAATGTGT+GGG | 0.640117 | 4_1:-84231720 | Msa0579500:CDS |
| AATAATGTGAAAGAAAGCTG+TGG | 0.640180 | 4_1:-84231521 | Msa0579500:three_prime_UTR |
| TGTCTGAGATAGAGAAAACC+AGG | 0.643310 | 4_1:+84234380 | None:intergenic |
| CTCTTGAGAAACAATGTGTG+GGG | 0.646122 | 4_1:-84231719 | Msa0579500:CDS |
| AGCAAACAAATAGTAGACAT+GGG | 0.646880 | 4_1:-84232696 | Msa0579500:CDS |
| GAGAGACTTGAGGTGCCTGT+AGG | 0.647949 | 4_1:+84232809 | None:intergenic |
| TGAACATAGCAAGAAACTGA+AGG | 0.649845 | 4_1:-84231392 | Msa0579500:three_prime_UTR |
| AACCTGATATTCAAGAACAA+GGG | 0.651956 | 4_1:+84234343 | None:intergenic |
| TTATGTAGCCGAGAGACTTG+AGG | 0.655821 | 4_1:+84232799 | None:intergenic |
| GTCTATAACATCATAAACTG+AGG | 0.658331 | 4_1:+84231345 | None:intergenic |
| GGATGGGTGATGATCACTTG+AGG | 0.669818 | 4_1:-84231295 | Msa0579500:three_prime_UTR |
| TTATGATGTTATAGACGACA+GGG | 0.672189 | 4_1:-84231338 | Msa0579500:three_prime_UTR |
| TTAATGGAAGGAAACAAGTG+GGG | 0.680860 | 4_1:-84234236 | Msa0579500:CDS |
| AGCTCTTGAGAAACAATGTG+TGG | 0.694534 | 4_1:-84231721 | Msa0579500:CDS |
| TCTACTGGAATAGTTCGTAG+TGG | 0.695795 | 4_1:-84233249 | Msa0579500:CDS |
| AGAAATTGTCCAAACTACGG+CGG | 0.743713 | 4_1:-84234433 | Msa0579500:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTTATAGAAAACTA+TGG | + | chr4_1:84232636-84232655 | None:intergenic | 10.0% |
| !!! | TTAATCTAAAAACATATTTT+GGG | + | chr4_1:84233610-84233629 | None:intergenic | 10.0% |
| !!! | TTTTTATTAGAGTAATAAAT+TGG | - | chr4_1:84234475-84234494 | Msa0579500:five_prime_UTR | 10.0% |
| !!! | TTTTATTAGAGTAATAAATT+GGG | - | chr4_1:84234476-84234495 | Msa0579500:five_prime_UTR | 10.0% |
| !! | AAAAGAAAAAACTATAATAA+TGG | + | chr4_1:84234522-84234541 | None:intergenic | 10.0% |
| !!! | TTAAGTTGTTTATAGAAAAA+TGG | + | chr4_1:84231670-84231689 | None:intergenic | 15.0% |
| !! | AGTAAATGATTGTTAATAAA+CGG | - | chr4_1:84232002-84232021 | Msa0579500:intron | 15.0% |
| !! | ATAAGATATATACAAAAACA+TGG | + | chr4_1:84232562-84232581 | None:intergenic | 15.0% |
| !!! | CTACATAGATTTTTTTTTAA+TGG | + | chr4_1:84233286-84233305 | None:intergenic | 15.0% |
| !!! | CTTAATCTAAAAACATATTT+TGG | + | chr4_1:84233611-84233630 | None:intergenic | 15.0% |
| !! | AGAAACAAATTTAATACTTA+GGG | - | chr4_1:84233738-84233757 | Msa0579500:intron | 15.0% |
| !!! | TTTTGGAAAATCTATTAATT+TGG | - | chr4_1:84233948-84233967 | Msa0579500:intron | 15.0% |
| !! | GAATAAGAAAATTATTTAGT+TGG | - | chr4_1:84234427-84234446 | Msa0579500:five_prime_UTR | 15.0% |
| !! | TCAAATACTACAAATTCAAT+CGG | + | chr4_1:84231826-84231845 | None:intergenic | 20.0% |
| !! | GTAAATGATTGTTAATAAAC+GGG | - | chr4_1:84232003-84232022 | Msa0579500:intron | 20.0% |
| !!! | CATTAATTTATCATTTGTTG+TGG | + | chr4_1:84232111-84232130 | None:intergenic | 20.0% |
| !! | ACAAATGATAAATTAATGTC+AGG | - | chr4_1:84232113-84232132 | Msa0579500:intron | 20.0% |
| !!! | TGTTTGTGAAAATTTTAACT+TGG | - | chr4_1:84232786-84232805 | Msa0579500:CDS | 20.0% |
| !! | TATAATAGAAATGTACGAAA+AGG | - | chr4_1:84232869-84232888 | Msa0579500:CDS | 20.0% |
| !! | TCTGAGAAAAATTATCTTTA+AGG | + | chr4_1:84233649-84233668 | None:intergenic | 20.0% |
| !! | GAGAAACAAATTTAATACTT+AGG | - | chr4_1:84233737-84233756 | Msa0579500:intron | 20.0% |
| !! | AAGTATTTAAGCATACATTA+TGG | - | chr4_1:84233803-84233822 | Msa0579500:intron | 20.0% |
| !! | AGAAACAAAGATAATTGTTT+GGG | + | chr4_1:84233857-84233876 | None:intergenic | 20.0% |
| !! | AAGAAACAAAGATAATTGTT+TGG | + | chr4_1:84233858-84233877 | None:intergenic | 20.0% |
| !! | AAGAAAATTATTTAGTTGGA+TGG | - | chr4_1:84234431-84234450 | Msa0579500:five_prime_UTR | 20.0% |
| !! | AGAAAATTATTTAGTTGGAT+GGG | - | chr4_1:84234432-84234451 | Msa0579500:five_prime_UTR | 20.0% |
| ! | TCAACAAAGTTATCATCAAA+TGG | - | chr4_1:84231214-84231233 | Msa0579500:three_prime_UTR | 25.0% |
| ! | TAGAGATATTAGCAAATAAG+CGG | + | chr4_1:84231464-84231483 | None:intergenic | 25.0% |
| !! | GCTAATATCTCTATCAATTT+TGG | - | chr4_1:84231471-84231490 | Msa0579500:three_prime_UTR | 25.0% |
| ! | AATAGCTGATAAACTAACTT+AGG | - | chr4_1:84231755-84231774 | Msa0579500:intron | 25.0% |
| ! | TATACATATATGAGTCTGTT+TGG | + | chr4_1:84232080-84232099 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | - | chr4_1:84232170-84232189 | Msa0579500:intron | 25.0% |
| ! | CAGTAGTAAGTAACTATTTA+CGG | + | chr4_1:84232327-84232346 | None:intergenic | 25.0% |
| !!! | TTTTTTACATTTCATTCACC+AGG | - | chr4_1:84232393-84232412 | Msa0579500:intron | 25.0% |
| !! | TCTGACATTTAGATTTTAGA+AGG | - | chr4_1:84232584-84232603 | Msa0579500:CDS | 25.0% |
| !!! | ACATTTAGATTTTAGAAGGA+GGG | - | chr4_1:84232588-84232607 | Msa0579500:CDS | 25.0% |
| ! | GGAAGATAAATATCAAAATC+TGG | + | chr4_1:84233134-84233153 | None:intergenic | 25.0% |
| ! | ATTCATACTGATATGATTAG+AGG | + | chr4_1:84233229-84233248 | None:intergenic | 25.0% |
| !! | GTAGTTATATTTTCTCTGTT+AGG | - | chr4_1:84233569-84233588 | Msa0579500:intron | 25.0% |
| !! | TTTTCTCTGTTAGGAATTTA+AGG | - | chr4_1:84233578-84233597 | Msa0579500:intron | 25.0% |
| ! | TGAAGCACATAAATTACAAT+AGG | + | chr4_1:84233686-84233705 | None:intergenic | 25.0% |
| ! | ATTTAATACTTAGGGTAAGA+AGG | - | chr4_1:84233746-84233765 | Msa0579500:intron | 25.0% |
| ! | TTTAATACTTAGGGTAAGAA+GGG | - | chr4_1:84233747-84233766 | Msa0579500:intron | 25.0% |
| ! | TTTATGCATGTAATCTGTTA+GGG | - | chr4_1:84233971-84233990 | Msa0579500:intron | 25.0% |
| ! | TAATTGATATCAACTGTTCA+GGG | + | chr4_1:84234128-84234147 | None:intergenic | 25.0% |
| ! | ATAATTGATATCAACTGTTC+AGG | + | chr4_1:84234129-84234148 | None:intergenic | 25.0% |
| ! | ATGATAGTAGAATAATCTGT+AGG | - | chr4_1:84234195-84234214 | Msa0579500:CDS | 25.0% |
| ! | TAATAAATTGGGTAATGCAT+GGG | - | chr4_1:84234487-84234506 | Msa0579500:five_prime_UTR | 25.0% |
| ! | GACAATTTCTTGTTTACCTT+CGG | + | chr4_1:84231300-84231319 | None:intergenic | 30.0% |
| ACAAGAAATTGTCCAAACTA+CGG | - | chr4_1:84231307-84231326 | Msa0579500:three_prime_UTR | 30.0% | |
| ! | GAACAAGAGTAACTTTGAAA+GGG | + | chr4_1:84231344-84231363 | None:intergenic | 30.0% |
| AACCTGATATTCAAGAACAA+GGG | + | chr4_1:84231403-84231422 | None:intergenic | 30.0% | |
| ATTAATGGAAGGAAACAAGT+GGG | - | chr4_1:84231506-84231525 | Msa0579500:three_prime_UTR | 30.0% | |
| ! | AGAGGCATAAATATGATAGA+GGG | + | chr4_1:84231724-84231743 | None:intergenic | 30.0% |
| ATCATATTTATGCCTCTGTT+TGG | - | chr4_1:84231727-84231746 | Msa0579500:CDS | 30.0% | |
| !!! | GTTAATAAACGGGTCTTTTT+TGG | - | chr4_1:84232013-84232032 | Msa0579500:intron | 30.0% |
| ! | AATTTTCATAAGCTATTCCG+AGG | - | chr4_1:84232137-84232156 | Msa0579500:intron | 30.0% |
| TTCAAATAAGTCAGCCTATA+TGG | - | chr4_1:84232260-84232279 | Msa0579500:intron | 30.0% | |
| TTCAAATCAACACTAAAGCA+GGG | + | chr4_1:84232366-84232385 | None:intergenic | 30.0% | |
| TTTCAAATCAACACTAAAGC+AGG | + | chr4_1:84232367-84232386 | None:intergenic | 30.0% | |
| TTGAGAAGAATGGAAAAATG+TGG | - | chr4_1:84232468-84232487 | Msa0579500:intron | 30.0% | |
| TGAGAAGAATGGAAAAATGT+GGG | - | chr4_1:84232469-84232488 | Msa0579500:intron | 30.0% | |
| CAAGATTTATACTTCAATCG+AGG | - | chr4_1:84232517-84232536 | Msa0579500:intron | 30.0% | |
| !! | GACATTTAGATTTTAGAAGG+AGG | - | chr4_1:84232587-84232606 | Msa0579500:CDS | 30.0% |
| ! | TATAGAAAACTATGGCCTTA+AGG | + | chr4_1:84232628-84232647 | None:intergenic | 30.0% |
| AGACGATAAATAAGCCAAAT+AGG | - | chr4_1:84232723-84232742 | Msa0579500:CDS | 30.0% | |
| AATGCATCATTGAACCTATT+TGG | + | chr4_1:84232740-84232759 | None:intergenic | 30.0% | |
| !!! | GGTTCAATGATGCATTTTTT+TGG | - | chr4_1:84232744-84232763 | Msa0579500:CDS | 30.0% |
| !!! | AATGATGCATTTTTTTGGCT+AGG | - | chr4_1:84232749-84232768 | Msa0579500:CDS | 30.0% |
| !!! | TGTGAAAATTTTAACTTGGC+AGG | - | chr4_1:84232790-84232809 | Msa0579500:CDS | 30.0% |
| TAGAAGTTCTCAAAAACAAG+TGG | - | chr4_1:84233004-84233023 | Msa0579500:intron | 30.0% | |
| AAGCAAACAAATAGTAGACA+TGG | - | chr4_1:84233046-84233065 | Msa0579500:intron | 30.0% | |
| AGCAAACAAATAGTAGACAT+GGG | - | chr4_1:84233047-84233066 | Msa0579500:intron | 30.0% | |
| ATATTTATCTTCCAGACAGT+AGG | - | chr4_1:84233141-84233160 | Msa0579500:intron | 30.0% | |
| ! | ATGTTGTTTATTGTGTTGTG+TGG | - | chr4_1:84233400-84233419 | Msa0579500:intron | 30.0% |
| ! | CTGTTAGGAATTTAAGGTAA+TGG | - | chr4_1:84233584-84233603 | Msa0579500:intron | 30.0% |
| ! | CAAGAAATTGATAAGCGTTT+TGG | - | chr4_1:84233715-84233734 | Msa0579500:intron | 30.0% |
| TAAGTGTAAGAAAAAGGGAA+AGG | + | chr4_1:84233923-84233942 | None:intergenic | 30.0% | |
| CCTGTTAAGTGTAAGAAAAA+GGG | + | chr4_1:84233928-84233947 | None:intergenic | 30.0% | |
| ACCTGTTAAGTGTAAGAAAA+AGG | + | chr4_1:84233929-84233948 | None:intergenic | 30.0% | |
| ! | TTCTTACACTTAACAGGTTT+TGG | - | chr4_1:84233931-84233950 | Msa0579500:intron | 30.0% |
| GTTTATGCATGTAATCTGTT+AGG | - | chr4_1:84233970-84233989 | Msa0579500:intron | 30.0% | |
| TTATGCATGTAATCTGTTAG+GGG | - | chr4_1:84233972-84233991 | Msa0579500:intron | 30.0% | |
| ACAGCTTTCTTTCACATTAT+TGG | + | chr4_1:84234223-84234242 | None:intergenic | 30.0% | |
| AATAATGTGAAAGAAAGCTG+TGG | - | chr4_1:84234222-84234241 | Msa0579500:CDS | 30.0% | |
| GTCTATAACATCATAAACTG+AGG | + | chr4_1:84234401-84234420 | None:intergenic | 30.0% | |
| TTTATGATGTTATAGACGAC+AGG | - | chr4_1:84234404-84234423 | Msa0579500:five_prime_UTR | 30.0% | |
| TTATGATGTTATAGACGACA+GGG | - | chr4_1:84234405-84234424 | Msa0579500:five_prime_UTR | 30.0% | |
| GTAATAAATTGGGTAATGCA+TGG | - | chr4_1:84234486-84234505 | Msa0579500:five_prime_UTR | 30.0% | |
| CTTTCCAATTTAGTAGCATG+TGG | - | chr4_1:84231256-84231275 | Msa0579500:three_prime_UTR | 35.0% | |
| TTGACCACATGCTACTAAAT+TGG | + | chr4_1:84231263-84231282 | None:intergenic | 35.0% | |
| CATGTGGTCAACCAAAATAA+AGG | - | chr4_1:84231272-84231291 | Msa0579500:three_prime_UTR | 35.0% | |
| AACCAAAATAAAGGAACCGA+AGG | - | chr4_1:84231281-84231300 | Msa0579500:three_prime_UTR | 35.0% | |
| !! | TACCTTCGGTTCCTTTATTT+TGG | + | chr4_1:84231286-84231305 | None:intergenic | 35.0% |
| GGAACAAGAGTAACTTTGAA+AGG | + | chr4_1:84231345-84231364 | None:intergenic | 35.0% | |
| TTCAAAGTTACTCTTGTTCC+TGG | - | chr4_1:84231345-84231364 | Msa0579500:three_prime_UTR | 35.0% | |
| AACCCTTGTTCTTGAATATC+AGG | - | chr4_1:84231398-84231417 | Msa0579500:three_prime_UTR | 35.0% | |
| GAACCTGATATTCAAGAACA+AGG | + | chr4_1:84231404-84231423 | None:intergenic | 35.0% | |
| GATATTAGCAAATAAGCGGA+TGG | + | chr4_1:84231460-84231479 | None:intergenic | 35.0% | |
| !! | TGGTTGCAGCTTTTGATTAA+TGG | - | chr4_1:84231491-84231510 | Msa0579500:three_prime_UTR | 35.0% |
| !! | TGCAGCTTTTGATTAATGGA+AGG | - | chr4_1:84231495-84231514 | Msa0579500:three_prime_UTR | 35.0% |
| GATTAATGGAAGGAAACAAG+TGG | - | chr4_1:84231505-84231524 | Msa0579500:three_prime_UTR | 35.0% | |
| TTAATGGAAGGAAACAAGTG+GGG | - | chr4_1:84231507-84231526 | Msa0579500:three_prime_UTR | 35.0% | |
| TTTGACCTGAATTGCGATTT+GGG | + | chr4_1:84231645-84231664 | None:intergenic | 35.0% | |
| ! | TTTTGACCTGAATTGCGATT+TGG | + | chr4_1:84231646-84231665 | None:intergenic | 35.0% |
| ! | CAGAGGCATAAATATGATAG+AGG | + | chr4_1:84231725-84231744 | None:intergenic | 35.0% |
| !!! | AGCTATTTTTCACCAAACAG+AGG | + | chr4_1:84231742-84231761 | None:intergenic | 35.0% |
| AGCTGATAAACTAACTTAGG+TGG | - | chr4_1:84231758-84231777 | Msa0579500:intron | 35.0% | |
| CATGAGCTTATAGCTTATAG+TGG | + | chr4_1:84231982-84232001 | None:intergenic | 35.0% | |
| TCACTAGTAAGTCACCATAT+AGG | + | chr4_1:84232277-84232296 | None:intergenic | 35.0% | |
| TCAAATCAACACTAAAGCAG+GGG | + | chr4_1:84232365-84232384 | None:intergenic | 35.0% | |
| ! | TTAACTTGGCAGGTATCTTA+TGG | - | chr4_1:84232800-84232819 | Msa0579500:CDS | 35.0% |
| GAAATGTACGAAAAGGTTTC+TGG | - | chr4_1:84232876-84232895 | Msa0579500:CDS | 35.0% | |
| CTTTCCGTAAGCAAGTTATT+TGG | - | chr4_1:84233083-84233102 | Msa0579500:intron | 35.0% | |
| !! | CTCACCAAATAACTTGCTTA+CGG | + | chr4_1:84233090-84233109 | None:intergenic | 35.0% |
| ATTCCTATGAGTCATGTTCT+CGG | + | chr4_1:84233312-84233331 | None:intergenic | 35.0% | |
| GCATAAAGGTTTCTGTTTGT+GGG | + | chr4_1:84233368-84233387 | None:intergenic | 35.0% | |
| TGCATAAAGGTTTCTGTTTG+TGG | + | chr4_1:84233369-84233388 | None:intergenic | 35.0% | |
| AAACAGAAACCTTTATGCAC+TGG | - | chr4_1:84233370-84233389 | Msa0579500:intron | 35.0% | |
| AGAAAAAGGGAAAGGAAACT+TGG | + | chr4_1:84233915-84233934 | None:intergenic | 35.0% | |
| ! | CCCTTTTTCTTACACTTAAC+AGG | - | chr4_1:84233925-84233944 | Msa0579500:intron | 35.0% |
| GCTTCAATTTCTTCTCTAGA+AGG | + | chr4_1:84234005-84234024 | None:intergenic | 35.0% | |
| ! | CACAAACTGGATTGTGATTT+TGG | - | chr4_1:84234289-84234308 | Msa0579500:intron | 35.0% |
| TGAACATAGCAAGAAACTGA+AGG | - | chr4_1:84234351-84234370 | Msa0579500:five_prime_UTR | 35.0% | |
| AGAAATTGTCCAAACTACGG+CGG | - | chr4_1:84231310-84231329 | Msa0579500:three_prime_UTR | 40.0% | |
| ! | TGTCTGAGATAGAGAAAACC+AGG | + | chr4_1:84231366-84231385 | None:intergenic | 40.0% |
| AAGAATGAGATGTGAAGCGA+AGG | + | chr4_1:84231620-84231639 | None:intergenic | 40.0% | |
| GCTTATTTCCATACACACCT+CGG | + | chr4_1:84232157-84232176 | None:intergenic | 40.0% | |
| TACGTAGTTGTGAGATGGTT+CGG | + | chr4_1:84232226-84232245 | None:intergenic | 40.0% | |
| ATGGAATGAAGAGATGGGAA+TGG | - | chr4_1:84232436-84232455 | Msa0579500:intron | 40.0% | |
| GCAGAGGTTATTGAGAAGAA+TGG | - | chr4_1:84232458-84232477 | Msa0579500:intron | 40.0% | |
| GGAAAAATGTGGGTATCTAC+TGG | - | chr4_1:84232479-84232498 | Msa0579500:intron | 40.0% | |
| TCTACTGGAATAGTTCGTAG+TGG | - | chr4_1:84232494-84232513 | Msa0579500:intron | 40.0% | |
| TTCAATCGAGGAGACATTGT+AGG | - | chr4_1:84232529-84232548 | Msa0579500:intron | 40.0% | |
| GAAGAGTCTCACAATCCTTA+AGG | - | chr4_1:84232610-84232629 | Msa0579500:CDS | 40.0% | |
| TTCGCTGTCTATGAGATGTA+AGG | + | chr4_1:84232835-84232854 | None:intergenic | 40.0% | |
| AAGTCTCTCGGCTACATAAT+TGG | - | chr4_1:84232948-84232967 | Msa0579500:intron | 40.0% | |
| AGTCTCTCGGCTACATAATT+GGG | - | chr4_1:84232949-84232968 | Msa0579500:intron | 40.0% | |
| CAAAAACAAGTGGCTCTTGA+AGG | - | chr4_1:84233014-84233033 | Msa0579500:intron | 40.0% | |
| ! | GATTTTCTGAACCTACTGTC+TGG | + | chr4_1:84233155-84233174 | None:intergenic | 40.0% |
| AGGTTCAGAAAATCTTCTCC+AGG | - | chr4_1:84233161-84233180 | Msa0579500:intron | 40.0% | |
| AGCAGAAAATTTGGATCACC+TGG | + | chr4_1:84233182-84233201 | None:intergenic | 40.0% | |
| GACAAGCACAGCAGAAAATT+TGG | + | chr4_1:84233191-84233210 | None:intergenic | 40.0% | |
| ! | ATTTTCTGCTGTGCTTGTCT+AGG | - | chr4_1:84233192-84233211 | Msa0579500:intron | 40.0% |
| TGAGTGCAAGAATGTAAGTC+GGG | + | chr4_1:84233345-84233364 | None:intergenic | 40.0% | |
| GTGAGTGCAAGAATGTAAGT+CGG | + | chr4_1:84233346-84233365 | None:intergenic | 40.0% | |
| ! | AGAAACCTTTATGCACTGGT+AGG | - | chr4_1:84233374-84233393 | Msa0579500:intron | 40.0% |
| ! | GAAACCTTTATGCACTGGTA+GGG | - | chr4_1:84233375-84233394 | Msa0579500:intron | 40.0% |
| !! | AATTTGCAGCTGTGTCGTTT+GGG | - | chr4_1:84233492-84233511 | Msa0579500:intron | 40.0% |
| AATACTTAGGGTAAGAAGGG+TGG | - | chr4_1:84233750-84233769 | Msa0579500:intron | 40.0% | |
| ATACTTAGGGTAAGAAGGGT+GGG | - | chr4_1:84233751-84233770 | Msa0579500:intron | 40.0% | |
| GAGTTGAGGACAAATTTGCA+TGG | + | chr4_1:84233893-84233912 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAACAATGTG+TGG | - | chr4_1:84234022-84234041 | Msa0579500:intron | 40.0% | |
| GCTCTTGAGAAACAATGTGT+GGG | - | chr4_1:84234023-84234042 | Msa0579500:intron | 40.0% | |
| CTCTTGAGAAACAATGTGTG+GGG | - | chr4_1:84234024-84234043 | Msa0579500:intron | 40.0% | |
| CAGTTTCTTTCCCTTTGACA+AGG | - | chr4_1:84234085-84234104 | Msa0579500:intron | 40.0% | |
| GGAAGTTCAACCTTGTCAAA+GGG | + | chr4_1:84234098-84234117 | None:intergenic | 40.0% | |
| AGGAAGTTCAACCTTGTCAA+AGG | + | chr4_1:84234099-84234118 | None:intergenic | 40.0% | |
| ATTTCCACTCTGAGCTAAAG+AGG | - | chr4_1:84234151-84234170 | Msa0579500:CDS | 40.0% | |
| TTTCCACTCTGAGCTAAAGA+GGG | - | chr4_1:84234152-84234171 | Msa0579500:CDS | 40.0% | |
| AAAGAAAGCTGTGGAAGTTG+TGG | - | chr4_1:84234231-84234250 | Msa0579500:CDS | 40.0% | |
| ATGATAACCTGCGCTACAAA+TGG | - | chr4_1:84234256-84234275 | Msa0579500:intron | 40.0% | |
| TGATAACCTGCGCTACAAAT+GGG | - | chr4_1:84234257-84234276 | Msa0579500:intron | 40.0% | |
| TAGCAAGAAACTGAAGGCAA+TGG | - | chr4_1:84234357-84234376 | Msa0579500:five_prime_UTR | 40.0% | |
| CTTTGCCCAAATCGCAATTC+AGG | - | chr4_1:84231637-84231656 | Msa0579500:CDS | 45.0% | |
| AAGCTATTCCGAGGTGTGTA+TGG | - | chr4_1:84232146-84232165 | Msa0579500:intron | 45.0% | |
| ! | AGATGGTTCGGGAGAGTTTA+TGG | + | chr4_1:84232214-84232233 | None:intergenic | 45.0% |
| ACGTAGTTGTGAGATGGTTC+GGG | + | chr4_1:84232225-84232244 | None:intergenic | 45.0% | |
| TGACGTACGTAGTTGTGAGA+TGG | + | chr4_1:84232231-84232250 | None:intergenic | 45.0% | |
| ACGTCAAATCCAAAGCCAGA+TGG | - | chr4_1:84232417-84232436 | Msa0579500:intron | 45.0% | |
| ! | CTCTTCATTCCATCTGGCTT+TGG | + | chr4_1:84232429-84232448 | None:intergenic | 45.0% |
| AGCCAGATGGAATGAAGAGA+TGG | - | chr4_1:84232430-84232449 | Msa0579500:intron | 45.0% | |
| GCCAGATGGAATGAAGAGAT+GGG | - | chr4_1:84232431-84232450 | Msa0579500:intron | 45.0% | |
| TCCCATCTCTTCATTCCATC+TGG | + | chr4_1:84232435-84232454 | None:intergenic | 45.0% | |
| GGCAGGTATCTTATGGAACT+AGG | - | chr4_1:84232807-84232826 | Msa0579500:CDS | 45.0% | |
| !! | TGTACGAAAAGGTTTCTGGC+AGG | - | chr4_1:84232880-84232899 | Msa0579500:CDS | 45.0% |
| TTATGTAGCCGAGAGACTTG+AGG | + | chr4_1:84232947-84232966 | None:intergenic | 45.0% | |
| CAACCGAGAACATGACTCAT+AGG | - | chr4_1:84233306-84233325 | Msa0579500:CDS | 45.0% | |
| GAGTGCAAGAATGTAAGTCG+GGG | + | chr4_1:84233344-84233363 | None:intergenic | 45.0% | |
| ATGTCCCTACCAGTGCATAA+AGG | + | chr4_1:84233382-84233401 | None:intergenic | 45.0% | |
| TGGATGTTTATGTCGCTACC+TGG | - | chr4_1:84233420-84233439 | Msa0579500:intron | 45.0% | |
| GGATGTTTATGTCGCTACCT+GGG | - | chr4_1:84233421-84233440 | Msa0579500:intron | 45.0% | |
| GATGTTTATGTCGCTACCTG+GGG | - | chr4_1:84233422-84233441 | Msa0579500:intron | 45.0% | |
| ATGTTTATGTCGCTACCTGG+GGG | - | chr4_1:84233423-84233442 | Msa0579500:intron | 45.0% | |
| ! | GAATTTGCAGCTGTGTCGTT+TGG | - | chr4_1:84233491-84233510 | Msa0579500:intron | 45.0% |
| TACTTAGGGTAAGAAGGGTG+GGG | - | chr4_1:84233752-84233771 | Msa0579500:intron | 45.0% | |
| GGAAAGGAAACTTGGAGTTG+AGG | + | chr4_1:84233907-84233926 | None:intergenic | 45.0% | |
| GATTCCGTTGAAAATCTGCC+TGG | - | chr4_1:84234046-84234065 | Msa0579500:intron | 45.0% | |
| ! | GTGACCAGGCAGATTTTCAA+CGG | + | chr4_1:84234053-84234072 | None:intergenic | 45.0% |
| AAAATCTGCCTGGTCACAGA+AGG | - | chr4_1:84234056-84234075 | Msa0579500:intron | 45.0% | |
| ! | TTTCCCTCTTTAGCTCAGAG+TGG | + | chr4_1:84234158-84234177 | None:intergenic | 45.0% |
| CAAAGTGATCACAAACCTGC+AGG | - | chr4_1:84234313-84234332 | Msa0579500:intron | 45.0% | |
| ACAACATCACAATCACCTGC+AGG | + | chr4_1:84234331-84234350 | None:intergenic | 45.0% | |
| !!! | AATAAAATATATATTTTCTA+TGG | + | chr4_1:84231887-84231906 | None:intergenic | 5.0% |
| ACACTAAAGCAGGGGAAGCA+GGG | + | chr4_1:84232357-84232376 | None:intergenic | 50.0% | |
| AACACTAAAGCAGGGGAAGC+AGG | + | chr4_1:84232358-84232377 | None:intergenic | 50.0% | |
| !! | GGCTTTGGATTTGACGTTCC+TGG | + | chr4_1:84232414-84232433 | None:intergenic | 50.0% |
| TGAAGAGATGGGAATGGCAG+AGG | - | chr4_1:84232442-84232461 | Msa0579500:intron | 50.0% | |
| !! | AAGGTTTCTGGCAGGAAGAC+CGG | - | chr4_1:84232888-84232907 | Msa0579500:CDS | 50.0% |
| CAGGAAGACCGGATGTTGTT+GGG | - | chr4_1:84232899-84232918 | Msa0579500:CDS | 50.0% | |
| GAACAGCTCCCAACAACATC+CGG | + | chr4_1:84232910-84232929 | None:intergenic | 50.0% | |
| ATGTTGTTGGGAGCTGTTCG+AGG | - | chr4_1:84232911-84232930 | Msa0579500:CDS | 50.0% | |
| TACAGGCACCTCAAGTCTCT+CGG | - | chr4_1:84232936-84232955 | Msa0579500:intron | 50.0% | |
| CTCTCGGCTACATAATTGGG+CGG | - | chr4_1:84232952-84232971 | Msa0579500:intron | 50.0% | |
| TTGGGCGGCATAATGTTGCT+TGG | - | chr4_1:84232967-84232986 | Msa0579500:intron | 50.0% | |
| GCTTACGGAAAGCTCGACTT+TGG | + | chr4_1:84233075-84233094 | None:intergenic | 50.0% | |
| TGTTTATGTCGCTACCTGGG+GGG | - | chr4_1:84233424-84233443 | Msa0579500:intron | 50.0% | |
| GGTTGCAACTTGCAAGGTGT+AGG | - | chr4_1:84233453-84233472 | Msa0579500:intron | 50.0% | |
| TGCAACTTGCAAGGTGTAGG+CGG | - | chr4_1:84233456-84233475 | Msa0579500:intron | 50.0% | |
| TCAACTGTTCAGGGTAGAGC+AGG | + | chr4_1:84234119-84234138 | None:intergenic | 50.0% | |
| TGGGCTCAGTGATCACAAAC+TGG | - | chr4_1:84234276-84234295 | Msa0579500:intron | 50.0% | |
| GGATGGGTGATGATCACTTG+AGG | - | chr4_1:84234448-84234467 | Msa0579500:five_prime_UTR | 50.0% | |
| GTTCTATCGCCGCCGTAGTT+TGG | + | chr4_1:84231322-84231341 | None:intergenic | 55.0% | |
| GCAGGAAGACCGGATGTTGT+TGG | - | chr4_1:84232898-84232917 | Msa0579500:CDS | 55.0% | |
| ! | GAGAGACTTGAGGTGCCTGT+AGG | + | chr4_1:84232937-84232956 | None:intergenic | 55.0% |
| GTTTATGTCGCTACCTGGGG+GGG | - | chr4_1:84233425-84233444 | Msa0579500:intron | 55.0% | |
| TTTATGTCGCTACCTGGGGG+GGG | - | chr4_1:84233426-84233445 | Msa0579500:intron | 55.0% | |
| GGAGGAGGTTGCAACTTGCA+AGG | - | chr4_1:84233447-84233466 | Msa0579500:intron | 55.0% | |
| GCAACTTGCAAGGTGTAGGC+GGG | - | chr4_1:84233457-84233476 | Msa0579500:intron | 55.0% | |
| !! | TTGCAGCTGTGTCGTTTGGG+AGG | - | chr4_1:84233495-84233514 | Msa0579500:intron | 55.0% |
| !! | TGCAGCTGTGTCGTTTGGGA+GGG | - | chr4_1:84233496-84233515 | Msa0579500:intron | 55.0% |
| !! | GTGTCGTTTGGGAGGGAATG+CGG | - | chr4_1:84233503-84233522 | Msa0579500:intron | 55.0% |
| TCTGCCTGGTCACAGAAGGA+AGG | - | chr4_1:84234060-84234079 | Msa0579500:intron | 55.0% | |
| CTGCCTGGTCACAGAAGGAA+GGG | - | chr4_1:84234061-84234080 | Msa0579500:intron | 55.0% | |
| TGACCCTTCCTTCTGTGACC+AGG | + | chr4_1:84234067-84234086 | None:intergenic | 55.0% | |
| ACTGAGCCCATTTGTAGCGC+AGG | + | chr4_1:84234266-84234285 | None:intergenic | 55.0% | |
| GGGAGCTGTTCGAGGCCTAC+AGG | - | chr4_1:84232919-84232938 | Msa0579500:CDS | 65.0% | |
| ATGTCGCTACCTGGGGGGGG+AGG | - | chr4_1:84233429-84233448 | Msa0579500:intron | 70.0% | |
| TTGCAACCTCCTCCCCCCCC+AGG | + | chr4_1:84233441-84233460 | None:intergenic | 70.0% | |
| TCGCTACCTGGGGGGGGAGG+AGG | - | chr4_1:84233432-84233451 | Msa0579500:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 84231200 | 84234565 | 84231200 | ID=Msa0579500;Name=Msa0579500 |
| chr4_1 | mRNA | 84231200 | 84234565 | 84231200 | ID=Msa0579500-mRNA-1;Parent=Msa0579500;Name=Msa0579500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=230|1|1|1|0.75|0.6|5|435|273 |
| chr4_1 | exon | 84231200 | 84231773 | 84231200 | ID=Msa0579500-mRNA-1:exon:30834;Parent=Msa0579500-mRNA-1 |
| chr4_1 | exon | 84232552 | 84232953 | 84232552 | ID=Msa0579500-mRNA-1:exon:30833;Parent=Msa0579500-mRNA-1 |
| chr4_1 | exon | 84233219 | 84233350 | 84233219 | ID=Msa0579500-mRNA-1:exon:30832;Parent=Msa0579500-mRNA-1 |
| chr4_1 | exon | 84234107 | 84234265 | 84234107 | ID=Msa0579500-mRNA-1:exon:30831;Parent=Msa0579500-mRNA-1 |
| chr4_1 | exon | 84234346 | 84234565 | 84234346 | ID=Msa0579500-mRNA-1:exon:30830;Parent=Msa0579500-mRNA-1 |
| chr4_1 | five_prime_UTR | 84234346 | 84234565 | 84234346 | ID=Msa0579500-mRNA-1:five_prime_utr;Parent=Msa0579500-mRNA-1 |
| chr4_1 | five_prime_UTR | 84234256 | 84234265 | 84234256 | ID=Msa0579500-mRNA-1:five_prime_utr;Parent=Msa0579500-mRNA-1 |
| chr4_1 | CDS | 84234107 | 84234255 | 84234107 | ID=Msa0579500-mRNA-1:cds;Parent=Msa0579500-mRNA-1 |
| chr4_1 | CDS | 84233219 | 84233350 | 84233219 | ID=Msa0579500-mRNA-1:cds;Parent=Msa0579500-mRNA-1 |
| chr4_1 | CDS | 84232552 | 84232953 | 84232552 | ID=Msa0579500-mRNA-1:cds;Parent=Msa0579500-mRNA-1 |
| chr4_1 | CDS | 84231635 | 84231773 | 84231635 | ID=Msa0579500-mRNA-1:cds;Parent=Msa0579500-mRNA-1 |
| chr4_1 | three_prime_UTR | 84231200 | 84231634 | 84231200 | ID=Msa0579500-mRNA-1:three_prime_utr;Parent=Msa0579500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
