AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567240 MtrunA17_Chr8g0382051 92.308 273 17 1 1 273 1 269 0.0 509
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567240 AT3G57360.1 46.888 241 118 5 34 272 21 253 2.10e-71 220
Msa0567240 AT3G02370.4 44.076 211 111 3 64 273 1 205 1.91e-59 188
Msa0567240 AT3G02370.2 44.076 211 111 3 64 273 1 205 1.91e-59 188
Msa0567240 AT3G02370.3 44.076 211 111 3 64 273 1 205 1.91e-59 188
Msa0567240 AT3G02370.1 44.848 165 85 2 64 227 1 160 1.73e-45 150

Find 98 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAACTGGATTGTGATTT+TGG 0.090434 4_1:-68587899 Msa0567240:three_prime_UTR
ACAGCTTTCTTTCACATTAT+TGG 0.097592 4_1:+68587968 None:intergenic
ATCCTTCGGTTCCTTTATTT+TGG 0.182456 4_1:+68590914 None:intergenic
AAGTCTCTCGGCTACATAAT+TGG 0.212462 4_1:-68589243 Msa0567240:CDS
CTCTTCATTCCATCTGGCTT+TGG 0.237765 4_1:+68589766 None:intergenic
GACAAGCACAGCAGAAAATT+TGG 0.239630 4_1:+68589003 None:intergenic
TTAACTTGGCAGGTATCTTA+TGG 0.241091 4_1:-68589391 Msa0567240:intron
AACCCTTGTTCTTGAATATC+AGG 0.246191 4_1:-68590774 Msa0567240:intron
GAAATGTACGAAAAGGTTTC+TGG 0.246659 4_1:-68589315 Msa0567240:CDS
CTTTCCATAAGTAAGTTATT+TGG 0.268545 4_1:-68589108 Msa0567240:CDS
TAGAACCCTTTCAAAGTTAC+TGG 0.270230 4_1:-68590827 Msa0567240:five_prime_UTR
CTTTGCCCAAATCGCAATTC+AGG 0.274999 4_1:-68590535 Msa0567240:intron
CTCACCAAATAACTTACTTA+TGG 0.296788 4_1:+68589104 None:intergenic
ATAATTGATATCAACTGTTC+AGG 0.318010 4_1:+68588062 None:intergenic
TTTGACCTGAATTGCGATTT+GGG 0.319440 4_1:+68590530 None:intergenic
TCCCATCTCTTCATTCCATC+TGG 0.337819 4_1:+68589760 None:intergenic
GAATAAGAAAATTATTTAGT+TGG 0.370125 4_1:-68587761 Msa0567240:three_prime_UTR
GTTCTATCGCCGCCGTAGTT+TGG 0.372048 4_1:+68590844 None:intergenic
GCTTCAATTTCTTCTCTAGA+AGG 0.386301 4_1:+68588186 None:intergenic
AAGAAAATTATTTAGTTGGA+TGG 0.389099 4_1:-68587757 Msa0567240:three_prime_UTR
ATGATAACCTGCGCTACAAA+TGG 0.392220 4_1:-68587932 Msa0567240:three_prime_UTR
GGAAGATAAATATCAAAATC+TGG 0.393325 4_1:+68589060 None:intergenic
AGAAAAGAATTTCTGATCTT+GGG 0.395338 4_1:-68590965 None:intergenic
ATTTCAATGACAGTTTGAAT+TGG 0.399838 4_1:-68587645 Msa0567240:three_prime_UTR
ACTTATGGAAAGCTCGACTT+TGG 0.418825 4_1:+68589119 None:intergenic
AGTCTCTCGGCTACATAATT+GGG 0.429657 4_1:-68589242 Msa0567240:CDS
AGCAGAAAATTTGGATCACC+TGG 0.456168 4_1:+68589012 None:intergenic
TTTATGATGTTATAGACGAC+AGG 0.459378 4_1:-68587784 Msa0567240:three_prime_UTR
TTCGCTGTCTACGAGATGTA+AGG 0.463920 4_1:+68589359 None:intergenic
CAGGAAGACCGGATGTTGTT+GGG 0.466673 4_1:-68589292 Msa0567240:CDS
AGAAAACCAGTAACTTTGAA+AGG 0.470822 4_1:+68590821 None:intergenic
CAGTTTCTTTCCCTTTGACA+AGG 0.472569 4_1:-68588103 Msa0567240:CDS
GGGAGCTGTTCGAGGCCTAC+AGG 0.479326 4_1:-68589272 Msa0567240:CDS
GAAAACCAGTAACTTTGAAA+GGG 0.480618 4_1:+68590822 None:intergenic
GAACAGCTCCCAACAACATC+CGG 0.481581 4_1:+68589284 None:intergenic
AGAAAATTATTTAGTTGGAT+GGG 0.482353 4_1:-68587756 Msa0567240:three_prime_UTR
ATGTTGTTGGGAGCTGTTCG+AGG 0.483585 4_1:-68589280 Msa0567240:CDS
GCAGAGGTTATTGAGAAGAA+TGG 0.485595 4_1:-68589734 Msa0567240:CDS
TGGGCTCAGTGATCACAAAC+TGG 0.485634 4_1:-68587912 Msa0567240:three_prime_UTR
GCAGGAAGACCGGATGTTGT+TGG 0.493458 4_1:-68589293 Msa0567240:CDS
TATAATAGAAATGTACGAAA+AGG 0.493873 4_1:-68589322 Msa0567240:CDS
AGCCAGATGGAATGAAGAGA+TGG 0.498558 4_1:-68589762 Msa0567240:CDS
AAGGTTTCTGGCAGGAAGAC+CGG 0.499823 4_1:-68589303 Msa0567240:CDS
TTGGGCGGCATAATGTTGCT+TGG 0.506016 4_1:-68589224 Msa0567240:CDS
ATTTCCACTCTGAGCTAAAG+AGG 0.519666 4_1:-68588037 Msa0567240:three_prime_UTR
TGAAGAGATGGGAATGGCAG+AGG 0.522087 4_1:-68589750 Msa0567240:CDS
TCAACTGTTCAGGGTAGAGC+AGG 0.523816 4_1:+68588072 None:intergenic
AGGAAGTTCAACCTTGTCAA+AGG 0.524372 4_1:+68588092 None:intergenic
TGATAACCTGCGCTACAAAT+GGG 0.525231 4_1:-68587931 Msa0567240:three_prime_UTR
ACTGAGCCCATTTGTAGCGC+AGG 0.527267 4_1:+68587925 None:intergenic
GTAATAAATTGGGTAATGCA+TGG 0.537975 4_1:-68587702 Msa0567240:three_prime_UTR
TAATTGATATCAACTGTTCA+GGG 0.540941 4_1:+68588063 None:intergenic
ATTAATGGAAGGAAACAAGT+GGG 0.544553 4_1:-68590666 Msa0567240:exon
CATGTGGTAAACCAAAATAA+AGG 0.547553 4_1:-68590925 Msa0567240:five_prime_UTR
GGAAGTTCAACCTTGTCAAA+GGG 0.547715 4_1:+68588093 None:intergenic
TAATAAATTGGGTAATGCAT+GGG 0.562318 4_1:-68587701 Msa0567240:three_prime_UTR
AGGTTCAGAAAATCTTCTCC+AGG 0.564329 4_1:-68589030 Msa0567240:CDS
TCTGCCTGGTCACAGAAGGA+AGG 0.565898 4_1:-68588128 Msa0567240:CDS
TGACCCTTCCTTCTGTGACC+AGG 0.571599 4_1:+68588124 None:intergenic
ACAACATCACAATCACCTGC+AGG 0.573998 4_1:+68587860 None:intergenic
ATGGAATGAAGAGATGGGAA+TGG 0.574705 4_1:-68589756 Msa0567240:CDS
ATGATAGTAGAATAATCTGT+AGG 0.576286 4_1:-68587993 Msa0567240:three_prime_UTR
AAAATCTGCCTGGTCACAGA+AGG 0.579328 4_1:-68588132 Msa0567240:CDS
GCCAGATGGAATGAAGAGAT+GGG 0.580713 4_1:-68589761 Msa0567240:CDS
AAGCAAACAAATAGTAGACA+TGG 0.583081 4_1:-68589145 Msa0567240:CDS
TTTCCACTCTGAGCTAAAGA+GGG 0.588374 4_1:-68588036 Msa0567240:three_prime_UTR
ACGTCAAATCCAAAGCCAGA+TGG 0.589896 4_1:-68589775 Msa0567240:CDS
ATATTTATCTTCCAGACAGT+AGG 0.589908 4_1:-68589050 Msa0567240:CDS
CTCTCGGCTACATAATTGGG+CGG 0.591627 4_1:-68589239 Msa0567240:CDS
GGCAGGTATCTTATGGAACT+AGG 0.591792 4_1:-68589384 Msa0567240:intron
TACAGGCACCTCAAGTCTCT+CGG 0.595258 4_1:-68589255 Msa0567240:CDS
CAAAGTGATCACAAACCTGC+AGG 0.595322 4_1:-68587875 Msa0567240:three_prime_UTR
AACCAAAATAAAGGAACCGA+AGG 0.596008 4_1:-68590916 Msa0567240:intron
CTGCCTGGTCACAGAAGGAA+GGG 0.600913 4_1:-68588127 Msa0567240:CDS
ATTTCGAATTTAGTAGCATG+TGG 0.601815 4_1:-68590941 Msa0567240:five_prime_UTR
TTTCCCTCTTTAGCTCAGAG+TGG 0.602904 4_1:+68588033 None:intergenic
GATTCCGTTGAAAATCTGCC+TGG 0.603900 4_1:-68588142 Msa0567240:CDS
GATTAATGGAAGGAAACAAG+TGG 0.610317 4_1:-68590667 Msa0567240:exon
TGTACGAAAAGGTTTCTGGC+AGG 0.610565 4_1:-68589311 Msa0567240:CDS
TAGCAAGAAACTGAAGGCAA+TGG 0.617206 4_1:-68587831 Msa0567240:three_prime_UTR
AAAGAAAGCTGTGGAAGTTG+TGG 0.630880 4_1:-68587957 Msa0567240:three_prime_UTR
AAGAATGAGATGTGAAGCGA+AGG 0.634517 4_1:+68590555 None:intergenic
CAAGATTTATACTTCAATCG+AGG 0.638560 4_1:-68589675 Msa0567240:CDS
GAACCTGATATTCAAGAACA+AGG 0.638915 4_1:+68590771 None:intergenic
GCTCTTGAGAAACAATGTGT+GGG 0.640117 4_1:-68588165 Msa0567240:CDS
AATAATGTGAAAGAAAGCTG+TGG 0.640180 4_1:-68587966 Msa0567240:three_prime_UTR
CTCTTGAGAAACAATGTGTG+GGG 0.646122 4_1:-68588164 Msa0567240:CDS
AGCAAACAAATAGTAGACAT+GGG 0.646880 4_1:-68589144 Msa0567240:CDS
GAGAGACTTGAGGTGCCTGT+AGG 0.647949 4_1:+68589257 None:intergenic
TGAACATAGCAAGAAACTGA+AGG 0.649845 4_1:-68587837 Msa0567240:three_prime_UTR
AACCTGATATTCAAGAACAA+GGG 0.651956 4_1:+68590772 None:intergenic
TTATGTAGCCGAGAGACTTG+AGG 0.655821 4_1:+68589247 None:intergenic
GTCTATAACATCATAAACTG+AGG 0.658331 4_1:+68587790 None:intergenic
GGATGGGTGATGATCACTTG+AGG 0.669818 4_1:-68587740 Msa0567240:three_prime_UTR
TTATGATGTTATAGACGACA+GGG 0.672189 4_1:-68587783 Msa0567240:three_prime_UTR
TTAATGGAAGGAAACAAGTG+GGG 0.680860 4_1:-68590665 Msa0567240:CDS
AGCTCTTGAGAAACAATGTG+TGG 0.694534 4_1:-68588166 Msa0567240:CDS
TCTACTGGAATAGTTCGTAG+TGG 0.695795 4_1:-68589698 Msa0567240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAAATATATATTTTCTA+TGG + chr4_1:68588315-68588334 None:intergenic 10.0%
!! ATATTATTTATAGAAAACTA+TGG + chr4_1:68589039-68589058 None:intergenic 10.0%
!!! TTTTTATTAGAGTAATAAAT+TGG - chr4_1:68590882-68590901 Msa0567240:intron 10.0%
!!! TTTTATTAGAGTAATAAATT+GGG - chr4_1:68590883-68590902 Msa0567240:intron 10.0%
!! AAAAGAAAAAACTATAATAA+TGG + chr4_1:68590929-68590948 None:intergenic 10.0%
!!! TTAAGTTGTTTATAGAAAAA+TGG + chr4_1:68588093-68588112 None:intergenic 15.0%
!! AGTAAATGATTGTTAATAAA+CGG - chr4_1:68588424-68588443 Msa0567240:intron 15.0%
!! ATAAGATATATACAAAAACA+TGG + chr4_1:68588965-68588984 None:intergenic 15.0%
!!! CTACATAGATTTTTTTTTAA+TGG + chr4_1:68589690-68589709 None:intergenic 15.0%
!!! TTAATCTAGAAACATATTTT+GGG + chr4_1:68590016-68590035 None:intergenic 15.0%
!! AGAAACAAATTTAATACTTA+GGG - chr4_1:68590144-68590163 Msa0567240:intron 15.0%
!!! TTTTGGAAAATCTATTAATT+TGG - chr4_1:68590355-68590374 Msa0567240:intron 15.0%
!! GAATAAGAAAATTATTTAGT+TGG - chr4_1:68590834-68590853 Msa0567240:five_prime_UTR 15.0%
!!! TTTTTTGTTTACCTTTGTTT+TGG + chr4_1:68587727-68587746 None:intergenic 20.0%
!! GTAAATGATTGTTAATAAAC+GGG - chr4_1:68588425-68588444 Msa0567240:intron 20.0%
!!! CATTAATTTATCATTTGTTG+TGG + chr4_1:68588514-68588533 None:intergenic 20.0%
!! ACAAATGATAAATTAATGTC+AGG - chr4_1:68588516-68588535 Msa0567240:intron 20.0%
!!! TGTTTGTGAAAATTTTAACT+TGG - chr4_1:68589190-68589209 Msa0567240:CDS 20.0%
!! TATAATAGAAATGTACGAAA+AGG - chr4_1:68589273-68589292 Msa0567240:CDS 20.0%
!!! CTTAATCTAGAAACATATTT+TGG + chr4_1:68590017-68590036 None:intergenic 20.0%
!!! CAAGAAATTAATTGTTGTTT+TGG - chr4_1:68590121-68590140 Msa0567240:intron 20.0%
!! GAGAAACAAATTTAATACTT+AGG - chr4_1:68590143-68590162 Msa0567240:intron 20.0%
!! AAGTATTTAAGCATACATTA+TGG - chr4_1:68590210-68590229 Msa0567240:intron 20.0%
!! AGAAACAAAGATAATTGTTT+GGG + chr4_1:68590264-68590283 None:intergenic 20.0%
!! AAGAAACAAAGATAATTGTT+TGG + chr4_1:68590265-68590284 None:intergenic 20.0%
!! AAGAAAATTATTTAGTTGGA+TGG - chr4_1:68590838-68590857 Msa0567240:five_prime_UTR 20.0%
!! AGAAAATTATTTAGTTGGAT+GGG - chr4_1:68590839-68590858 Msa0567240:five_prime_UTR 20.0%
! ACAAAAAATTGTCCAAACTA+CGG - chr4_1:68587739-68587758 Msa0567240:three_prime_UTR 25.0%
! TAGAGATATTAGCAAATAAG+CGG + chr4_1:68587887-68587906 None:intergenic 25.0%
!! GCTAATATCTCTATCAATTT+TGG - chr4_1:68587894-68587913 Msa0567240:three_prime_UTR 25.0%
! ATAGCTGATAAACTAACTTA+AGG - chr4_1:68588183-68588202 Msa0567240:CDS 25.0%
! TATACATATATGAGTCTGTT+TGG + chr4_1:68588483-68588502 None:intergenic 25.0%
! AATAAGCTGAAAATAGCTTA+TGG - chr4_1:68588573-68588592 Msa0567240:intron 25.0%
! CAGTAGTAAGTAACTATTTA+CGG + chr4_1:68588730-68588749 None:intergenic 25.0%
!!! TTTTTTACATTTCATTCACC+AGG - chr4_1:68588796-68588815 Msa0567240:intron 25.0%
!! TCTGACATTTAGATTTTAGA+AGG - chr4_1:68588987-68589006 Msa0567240:intron 25.0%
!!! ACATTTAGATTTTAGAAGGA+GGG - chr4_1:68588991-68589010 Msa0567240:intron 25.0%
!!! GATTCAATGATGCATTTTTT+TGG - chr4_1:68589148-68589167 Msa0567240:CDS 25.0%
! CTTTCCATAAGTAAGTTATT+TGG - chr4_1:68589487-68589506 Msa0567240:intron 25.0%
! GGAAGATAAATATCAAAATC+TGG + chr4_1:68589538-68589557 None:intergenic 25.0%
! ATTCATACTGATATGATTAG+AGG + chr4_1:68589633-68589652 None:intergenic 25.0%
!! GTAGTTATATTTTCTCTGTT+AGG - chr4_1:68589975-68589994 Msa0567240:intron 25.0%
!! TTTTCTCTGTTAGGAATTTA+AGG - chr4_1:68589984-68590003 Msa0567240:intron 25.0%
! TCTGAGAAAAATTATCTTCA+AGG + chr4_1:68590055-68590074 None:intergenic 25.0%
! TGAAGCACATAAATTACAAT+AGG + chr4_1:68590092-68590111 None:intergenic 25.0%
! ATTTAATACTTAGGGTAAGA+AGG - chr4_1:68590152-68590171 Msa0567240:intron 25.0%
! TTTAATACTTAGGGTAAGAA+GGG - chr4_1:68590153-68590172 Msa0567240:intron 25.0%
! TTTATGCATGTAATCTGTTA+GGG - chr4_1:68590378-68590397 Msa0567240:intron 25.0%
! TAATTGATATCAACTGTTCA+GGG + chr4_1:68590535-68590554 None:intergenic 25.0%
! ATAATTGATATCAACTGTTC+AGG + chr4_1:68590536-68590555 None:intergenic 25.0%
! ATGATAGTAGAATAATCTGT+AGG - chr4_1:68590602-68590621 Msa0567240:CDS 25.0%
! TAATAAATTGGGTAATGCAT+GGG - chr4_1:68590894-68590913 Msa0567240:intron 25.0%
ATTTCGAATTTAGTAGCATG+TGG - chr4_1:68587654-68587673 Msa0567240:three_prime_UTR 30.0%
CATGTGGTAAACCAAAATAA+AGG - chr4_1:68587670-68587689 Msa0567240:three_prime_UTR 30.0%
!!! CTTTGTTTTGGATTTCAAGT+GGG + chr4_1:68587715-68587734 None:intergenic 30.0%
! GAAAACCAGTAACTTTGAAA+GGG + chr4_1:68587776-68587795 None:intergenic 30.0%
AGAAAACCAGTAACTTTGAA+AGG + chr4_1:68587777-68587796 None:intergenic 30.0%
AACCTGATATTCAAGAACAA+GGG + chr4_1:68587826-68587845 None:intergenic 30.0%
ATTAATGGAAGGAAACAAGT+GGG - chr4_1:68587929-68587948 Msa0567240:three_prime_UTR 30.0%
ATTACCCTCTGTCAAATTTA+TGG - chr4_1:68588144-68588163 Msa0567240:CDS 30.0%
ATTTACTCATGAGCTTATAG+TGG + chr4_1:68588411-68588430 None:intergenic 30.0%
! AATTTTCATAAGCTATTCCG+AGG - chr4_1:68588540-68588559 Msa0567240:intron 30.0%
TTCAAATAAGTCAGCCTATA+TGG - chr4_1:68588663-68588682 Msa0567240:intron 30.0%
TTCAAATCAACACTAAAGCA+GGG + chr4_1:68588769-68588788 None:intergenic 30.0%
TTTCAAATCAACACTAAAGC+AGG + chr4_1:68588770-68588789 None:intergenic 30.0%
TTGAGAAGAATGGAAAAATG+TGG - chr4_1:68588871-68588890 Msa0567240:intron 30.0%
TGAGAAGAATGGAAAAATGT+GGG - chr4_1:68588872-68588891 Msa0567240:intron 30.0%
CAAGATTTATACTTCAATCG+AGG - chr4_1:68588920-68588939 Msa0567240:intron 30.0%
!! GACATTTAGATTTTAGAAGG+AGG - chr4_1:68588990-68589009 Msa0567240:intron 30.0%
! TATAGAAAACTATGGCCTTA+AGG + chr4_1:68589031-68589050 None:intergenic 30.0%
AGACGATAAATAAGCCAAAT+AGG - chr4_1:68589126-68589145 Msa0567240:CDS 30.0%
ATGCATCATTGAATCCTATT+TGG + chr4_1:68589143-68589162 None:intergenic 30.0%
!!! AATGATGCATTTTTTTGGCT+AGG - chr4_1:68589153-68589172 Msa0567240:CDS 30.0%
!!! TGTGAAAATTTTAACTTGGC+AGG - chr4_1:68589194-68589213 Msa0567240:CDS 30.0%
TAGAAGTTCTCAAAAACAAG+TGG - chr4_1:68589408-68589427 Msa0567240:intron 30.0%
AAGCAAACAAATAGTAGACA+TGG - chr4_1:68589450-68589469 Msa0567240:intron 30.0%
AGCAAACAAATAGTAGACAT+GGG - chr4_1:68589451-68589470 Msa0567240:intron 30.0%
CTCACCAAATAACTTACTTA+TGG + chr4_1:68589494-68589513 None:intergenic 30.0%
ATATTTATCTTCCAGACAGT+AGG - chr4_1:68589545-68589564 Msa0567240:intron 30.0%
! ATGTTGTTTATTGTGTTGTG+TGG - chr4_1:68589804-68589823 Msa0567240:intron 30.0%
! CTGTTAGGAATTTAAGGTAA+TGG - chr4_1:68589990-68590009 Msa0567240:intron 30.0%
TAAGTGTAAGAAAAAGGGAA+AGG + chr4_1:68590330-68590349 None:intergenic 30.0%
CCTGTTAAGTGTAAGAAAAA+GGG + chr4_1:68590335-68590354 None:intergenic 30.0%
ACCTGTTAAGTGTAAGAAAA+AGG + chr4_1:68590336-68590355 None:intergenic 30.0%
! TTCTTACACTTAACAGGTTT+TGG - chr4_1:68590338-68590357 Msa0567240:intron 30.0%
GTTTATGCATGTAATCTGTT+AGG - chr4_1:68590377-68590396 Msa0567240:intron 30.0%
TTATGCATGTAATCTGTTAG+GGG - chr4_1:68590379-68590398 Msa0567240:intron 30.0%
ACAGCTTTCTTTCACATTAT+TGG + chr4_1:68590630-68590649 None:intergenic 30.0%
AATAATGTGAAAGAAAGCTG+TGG - chr4_1:68590629-68590648 Msa0567240:CDS 30.0%
GTCTATAACATCATAAACTG+AGG + chr4_1:68590808-68590827 None:intergenic 30.0%
TTTATGATGTTATAGACGAC+AGG - chr4_1:68590811-68590830 Msa0567240:five_prime_UTR 30.0%
TTATGATGTTATAGACGACA+GGG - chr4_1:68590812-68590831 Msa0567240:five_prime_UTR 30.0%
GTAATAAATTGGGTAATGCA+TGG - chr4_1:68590893-68590912 Msa0567240:intron 30.0%
AACCAAAATAAAGGAACCGA+AGG - chr4_1:68587679-68587698 Msa0567240:three_prime_UTR 35.0%
!! ATCCTTCGGTTCCTTTATTT+TGG + chr4_1:68587684-68587703 None:intergenic 35.0%
!!! CCTTTGTTTTGGATTTCAAG+TGG + chr4_1:68587716-68587735 None:intergenic 35.0%
CCACTTGAAATCCAAAACAA+AGG - chr4_1:68587713-68587732 Msa0567240:three_prime_UTR 35.0%
AAAAATTGTCCAAACTACGG+CGG - chr4_1:68587742-68587761 Msa0567240:three_prime_UTR 35.0%
TAGAACCCTTTCAAAGTTAC+TGG - chr4_1:68587768-68587787 Msa0567240:three_prime_UTR 35.0%
AACCCTTGTTCTTGAATATC+AGG - chr4_1:68587821-68587840 Msa0567240:three_prime_UTR 35.0%
GAACCTGATATTCAAGAACA+AGG + chr4_1:68587827-68587846 None:intergenic 35.0%
GATATTAGCAAATAAGCGGA+TGG + chr4_1:68587883-68587902 None:intergenic 35.0%
!! TGGTTGCAGCTTTTGATTAA+TGG - chr4_1:68587914-68587933 Msa0567240:three_prime_UTR 35.0%
!! TGCAGCTTTTGATTAATGGA+AGG - chr4_1:68587918-68587937 Msa0567240:three_prime_UTR 35.0%
GATTAATGGAAGGAAACAAG+TGG - chr4_1:68587928-68587947 Msa0567240:three_prime_UTR 35.0%
TTAATGGAAGGAAACAAGTG+GGG - chr4_1:68587930-68587949 Msa0567240:three_prime_UTR 35.0%
TTTGACCTGAATTGCGATTT+GGG + chr4_1:68588068-68588087 None:intergenic 35.0%
! TTTTGACCTGAATTGCGATT+TGG + chr4_1:68588069-68588088 None:intergenic 35.0%
AGAGCCATAAATTTGACAGA+GGG + chr4_1:68588151-68588170 None:intergenic 35.0%
! GTCAAATTTATGGCTCTGTT+TGG - chr4_1:68588154-68588173 Msa0567240:CDS 35.0%
GCTGATAAACTAACTTAAGG+TGG - chr4_1:68588186-68588205 Msa0567240:CDS 35.0%
TCACTAGTAAGTCACCATAT+AGG + chr4_1:68588680-68588699 None:intergenic 35.0%
TCAAATCAACACTAAAGCAG+GGG + chr4_1:68588768-68588787 None:intergenic 35.0%
! TTAACTTGGCAGGTATCTTA+TGG - chr4_1:68589204-68589223 Msa0567240:CDS 35.0%
GAAATGTACGAAAAGGTTTC+TGG - chr4_1:68589280-68589299 Msa0567240:CDS 35.0%
ATTCCTATGAGTCATGTTCT+CGG + chr4_1:68589716-68589735 None:intergenic 35.0%
GCATAAAGGTTTCTGTTTGT+GGG + chr4_1:68589772-68589791 None:intergenic 35.0%
TGCATAAAGGTTTCTGTTTG+TGG + chr4_1:68589773-68589792 None:intergenic 35.0%
AAACAGAAACCTTTATGCAC+TGG - chr4_1:68589774-68589793 Msa0567240:CDS 35.0%
AGAAAAAGGGAAAGGAAACT+TGG + chr4_1:68590322-68590341 None:intergenic 35.0%
! CCCTTTTTCTTACACTTAAC+AGG - chr4_1:68590332-68590351 Msa0567240:intron 35.0%
GCTTCAATTTCTTCTCTAGA+AGG + chr4_1:68590412-68590431 None:intergenic 35.0%
! CACAAACTGGATTGTGATTT+TGG - chr4_1:68590696-68590715 Msa0567240:intron 35.0%
TGAACATAGCAAGAAACTGA+AGG - chr4_1:68590758-68590777 Msa0567240:intron 35.0%
AGTGGGTAGTATGAATCCTT+CGG + chr4_1:68587698-68587717 None:intergenic 40.0%
AAGAATGAGATGTGAAGCGA+AGG + chr4_1:68588043-68588062 None:intergenic 40.0%
CAGAGCCATAAATTTGACAG+AGG + chr4_1:68588152-68588171 None:intergenic 40.0%
GCTTATTTCCATACACACCT+CGG + chr4_1:68588560-68588579 None:intergenic 40.0%
TACGTAGTTGTGAGATGGTT+CGG + chr4_1:68588629-68588648 None:intergenic 40.0%
ATGGAATGAAGAGATGGGAA+TGG - chr4_1:68588839-68588858 Msa0567240:intron 40.0%
GCAGAGGTTATTGAGAAGAA+TGG - chr4_1:68588861-68588880 Msa0567240:intron 40.0%
GGAAAAATGTGGGTATCTAC+TGG - chr4_1:68588882-68588901 Msa0567240:intron 40.0%
TCTACTGGAATAGTTCGTAG+TGG - chr4_1:68588897-68588916 Msa0567240:intron 40.0%
TTCAATCGAGGAGACATTGT+AGG - chr4_1:68588932-68588951 Msa0567240:intron 40.0%
GAAGAGTCTCACAATCCTTA+AGG - chr4_1:68589013-68589032 Msa0567240:CDS 40.0%
AAGTCTCTCGGCTACATAAT+TGG - chr4_1:68589352-68589371 Msa0567240:CDS 40.0%
AGTCTCTCGGCTACATAATT+GGG - chr4_1:68589353-68589372 Msa0567240:CDS 40.0%
CAAAAACAAGTGGCTCTTGA+AGG - chr4_1:68589418-68589437 Msa0567240:intron 40.0%
ACTTATGGAAAGCTCGACTT+TGG + chr4_1:68589479-68589498 None:intergenic 40.0%
! GATTTTCTGAACCTACTGTC+TGG + chr4_1:68589559-68589578 None:intergenic 40.0%
AGGTTCAGAAAATCTTCTCC+AGG - chr4_1:68589565-68589584 Msa0567240:intron 40.0%
AGCAGAAAATTTGGATCACC+TGG + chr4_1:68589586-68589605 None:intergenic 40.0%
GACAAGCACAGCAGAAAATT+TGG + chr4_1:68589595-68589614 None:intergenic 40.0%
! ATTTTCTGCTGTGCTTGTCT+AGG - chr4_1:68589596-68589615 Msa0567240:intron 40.0%
TGAGTGCAAGAATGTAAGTC+GGG + chr4_1:68589749-68589768 None:intergenic 40.0%
GTGAGTGCAAGAATGTAAGT+CGG + chr4_1:68589750-68589769 None:intergenic 40.0%
! AGAAACCTTTATGCACTGGT+AGG - chr4_1:68589778-68589797 Msa0567240:CDS 40.0%
! GAAACCTTTATGCACTGGTA+GGG - chr4_1:68589779-68589798 Msa0567240:CDS 40.0%
AATACTTAGGGTAAGAAGGG+TGG - chr4_1:68590156-68590175 Msa0567240:intron 40.0%
ATACTTAGGGTAAGAAGGGT+GGG - chr4_1:68590157-68590176 Msa0567240:intron 40.0%
GAGTTGAGGACAAATTTGCA+TGG + chr4_1:68590300-68590319 None:intergenic 40.0%
AGCTCTTGAGAAACAATGTG+TGG - chr4_1:68590429-68590448 Msa0567240:intron 40.0%
GCTCTTGAGAAACAATGTGT+GGG - chr4_1:68590430-68590449 Msa0567240:intron 40.0%
CTCTTGAGAAACAATGTGTG+GGG - chr4_1:68590431-68590450 Msa0567240:intron 40.0%
CAGTTTCTTTCCCTTTGACA+AGG - chr4_1:68590492-68590511 Msa0567240:intron 40.0%
GGAAGTTCAACCTTGTCAAA+GGG + chr4_1:68590505-68590524 None:intergenic 40.0%
AGGAAGTTCAACCTTGTCAA+AGG + chr4_1:68590506-68590525 None:intergenic 40.0%
ATTTCCACTCTGAGCTAAAG+AGG - chr4_1:68590558-68590577 Msa0567240:CDS 40.0%
TTTCCACTCTGAGCTAAAGA+GGG - chr4_1:68590559-68590578 Msa0567240:CDS 40.0%
AAAGAAAGCTGTGGAAGTTG+TGG - chr4_1:68590638-68590657 Msa0567240:CDS 40.0%
ATGATAACCTGCGCTACAAA+TGG - chr4_1:68590663-68590682 Msa0567240:CDS 40.0%
TGATAACCTGCGCTACAAAT+GGG - chr4_1:68590664-68590683 Msa0567240:CDS 40.0%
TAGCAAGAAACTGAAGGCAA+TGG - chr4_1:68590764-68590783 Msa0567240:intron 40.0%
CTTTGCCCAAATCGCAATTC+AGG - chr4_1:68588060-68588079 Msa0567240:three_prime_UTR 45.0%
AAGCTATTCCGAGGTGTGTA+TGG - chr4_1:68588549-68588568 Msa0567240:intron 45.0%
! AGATGGTTCGGGAGAGTTTA+TGG + chr4_1:68588617-68588636 None:intergenic 45.0%
ACGTAGTTGTGAGATGGTTC+GGG + chr4_1:68588628-68588647 None:intergenic 45.0%
TGACGTACGTAGTTGTGAGA+TGG + chr4_1:68588634-68588653 None:intergenic 45.0%
ACGTCAAATCCAAAGCCAGA+TGG - chr4_1:68588820-68588839 Msa0567240:intron 45.0%
! CTCTTCATTCCATCTGGCTT+TGG + chr4_1:68588832-68588851 None:intergenic 45.0%
AGCCAGATGGAATGAAGAGA+TGG - chr4_1:68588833-68588852 Msa0567240:intron 45.0%
GCCAGATGGAATGAAGAGAT+GGG - chr4_1:68588834-68588853 Msa0567240:intron 45.0%
TCCCATCTCTTCATTCCATC+TGG + chr4_1:68588838-68588857 None:intergenic 45.0%
GGCAGGTATCTTATGGAACT+AGG - chr4_1:68589211-68589230 Msa0567240:CDS 45.0%
TTCGCTGTCTACGAGATGTA+AGG + chr4_1:68589239-68589258 None:intergenic 45.0%
!! TGTACGAAAAGGTTTCTGGC+AGG - chr4_1:68589284-68589303 Msa0567240:CDS 45.0%
TTATGTAGCCGAGAGACTTG+AGG + chr4_1:68589351-68589370 None:intergenic 45.0%
CAACCGAGAACATGACTCAT+AGG - chr4_1:68589710-68589729 Msa0567240:CDS 45.0%
GAGTGCAAGAATGTAAGTCG+GGG + chr4_1:68589748-68589767 None:intergenic 45.0%
ATGTCCCTACCAGTGCATAA+AGG + chr4_1:68589786-68589805 None:intergenic 45.0%
TGGATGTTTATGTCGCTACC+TGG - chr4_1:68589824-68589843 Msa0567240:intron 45.0%
GGATGTTTATGTCGCTACCT+GGG - chr4_1:68589825-68589844 Msa0567240:intron 45.0%
!! AATTTGCAGCCGTGTCGTTT+GGG - chr4_1:68589898-68589917 Msa0567240:intron 45.0%
TACTTAGGGTAAGAAGGGTG+GGG - chr4_1:68590158-68590177 Msa0567240:intron 45.0%
GGAAAGGAAACTTGGAGTTG+AGG + chr4_1:68590314-68590333 None:intergenic 45.0%
GATTCCGTTGAAAATCTGCC+TGG - chr4_1:68590453-68590472 Msa0567240:intron 45.0%
! GTGACCAGGCAGATTTTCAA+CGG + chr4_1:68590460-68590479 None:intergenic 45.0%
AAAATCTGCCTGGTCACAGA+AGG - chr4_1:68590463-68590482 Msa0567240:intron 45.0%
! TTTCCCTCTTTAGCTCAGAG+TGG + chr4_1:68590565-68590584 None:intergenic 45.0%
CAAAGTGATCACAAACCTGC+AGG - chr4_1:68590720-68590739 Msa0567240:intron 45.0%
ACAACATCACAATCACCTGC+AGG + chr4_1:68590738-68590757 None:intergenic 45.0%
ACACTAAAGCAGGGGAAGCA+GGG + chr4_1:68588760-68588779 None:intergenic 50.0%
AACACTAAAGCAGGGGAAGC+AGG + chr4_1:68588761-68588780 None:intergenic 50.0%
!! GGCTTTGGATTTGACGTTCC+TGG + chr4_1:68588817-68588836 None:intergenic 50.0%
TGAAGAGATGGGAATGGCAG+AGG - chr4_1:68588845-68588864 Msa0567240:intron 50.0%
!! AAGGTTTCTGGCAGGAAGAC+CGG - chr4_1:68589292-68589311 Msa0567240:CDS 50.0%
CAGGAAGACCGGATGTTGTT+GGG - chr4_1:68589303-68589322 Msa0567240:CDS 50.0%
GAACAGCTCCCAACAACATC+CGG + chr4_1:68589314-68589333 None:intergenic 50.0%
ATGTTGTTGGGAGCTGTTCG+AGG - chr4_1:68589315-68589334 Msa0567240:CDS 50.0%
TACAGGCACCTCAAGTCTCT+CGG - chr4_1:68589340-68589359 Msa0567240:CDS 50.0%
CTCTCGGCTACATAATTGGG+CGG - chr4_1:68589356-68589375 Msa0567240:CDS 50.0%
TTGGGCGGCATAATGTTGCT+TGG - chr4_1:68589371-68589390 Msa0567240:CDS 50.0%
TGTTTATGTCGCTACCTGGG+TGG - chr4_1:68589828-68589847 Msa0567240:intron 50.0%
GTTTATGTCGCTACCTGGGT+GGG - chr4_1:68589829-68589848 Msa0567240:intron 50.0%
TTTATGTCGCTACCTGGGTG+GGG - chr4_1:68589830-68589849 Msa0567240:intron 50.0%
GGTTGCAACTTGCAAGGTGT+AGG - chr4_1:68589859-68589878 Msa0567240:intron 50.0%
TGCAACTTGCAAGGTGTAGG+CGG - chr4_1:68589862-68589881 Msa0567240:intron 50.0%
! GAATTTGCAGCCGTGTCGTT+TGG - chr4_1:68589897-68589916 Msa0567240:intron 50.0%
TCAACTGTTCAGGGTAGAGC+AGG + chr4_1:68590526-68590545 None:intergenic 50.0%
TGGGCTCAGTGATCACAAAC+TGG - chr4_1:68590683-68590702 Msa0567240:intron 50.0%
GGATGGGTGATGATCACTTG+AGG - chr4_1:68590855-68590874 Msa0567240:five_prime_UTR 50.0%
GTTCTATCGCCGCCGTAGTT+TGG + chr4_1:68587754-68587773 None:intergenic 55.0%
GCAGGAAGACCGGATGTTGT+TGG - chr4_1:68589302-68589321 Msa0567240:CDS 55.0%
! GAGAGACTTGAGGTGCCTGT+AGG + chr4_1:68589341-68589360 None:intergenic 55.0%
TTATGTCGCTACCTGGGTGG+GGG - chr4_1:68589831-68589850 Msa0567240:intron 55.0%
GGAGGAGGTTGCAACTTGCA+AGG - chr4_1:68589853-68589872 Msa0567240:intron 55.0%
GCAACTTGCAAGGTGTAGGC+GGG - chr4_1:68589863-68589882 Msa0567240:intron 55.0%
GCATTCCCTCCCAAACGACA+CGG + chr4_1:68589910-68589929 None:intergenic 55.0%
!! GTGTCGTTTGGGAGGGAATG+CGG - chr4_1:68589909-68589928 Msa0567240:intron 55.0%
TCTGCCTGGTCACAGAAGGA+AGG - chr4_1:68590467-68590486 Msa0567240:intron 55.0%
CTGCCTGGTCACAGAAGGAA+GGG - chr4_1:68590468-68590487 Msa0567240:intron 55.0%
TGACCCTTCCTTCTGTGACC+AGG + chr4_1:68590474-68590493 None:intergenic 55.0%
ACTGAGCCCATTTGTAGCGC+AGG + chr4_1:68590673-68590692 None:intergenic 55.0%
TATGTCGCTACCTGGGTGGG+GGG - chr4_1:68589832-68589851 Msa0567240:intron 60.0%
!! TTGCAGCCGTGTCGTTTGGG+AGG - chr4_1:68589901-68589920 Msa0567240:intron 60.0%
!! TGCAGCCGTGTCGTTTGGGA+GGG - chr4_1:68589902-68589921 Msa0567240:intron 60.0%
GGGAGCTGTTCGAGGCCTAC+AGG - chr4_1:68589323-68589342 Msa0567240:CDS 65.0%
GTCGCTACCTGGGTGGGGGG+AGG - chr4_1:68589835-68589854 Msa0567240:intron 75.0%
GCTACCTGGGTGGGGGGAGG+AGG - chr4_1:68589838-68589857 Msa0567240:intron 75.0%
GCAACCTCCTCCCCCCACCC+AGG + chr4_1:68589845-68589864 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68587645 68590972 68587645 ID=Msa0567240;Name=Msa0567240
chr4_1 mRNA 68587645 68590972 68587645 ID=Msa0567240-mRNA-1;Parent=Msa0567240;Name=Msa0567240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|0.6|0.5|6|435|273
chr4_1 exon 68587645 68588218 68587645 ID=Msa0567240-mRNA-1:exon:22685;Parent=Msa0567240-mRNA-1
chr4_1 exon 68589000 68589401 68589000 ID=Msa0567240-mRNA-1:exon:22684;Parent=Msa0567240-mRNA-1
chr4_1 exon 68589668 68589799 68589668 ID=Msa0567240-mRNA-1:exon:22683;Parent=Msa0567240-mRNA-1
chr4_1 exon 68590536 68590694 68590536 ID=Msa0567240-mRNA-1:exon:22682;Parent=Msa0567240-mRNA-1
chr4_1 exon 68590775 68590882 68590775 ID=Msa0567240-mRNA-1:exon:22681;Parent=Msa0567240-mRNA-1
chr4_1 exon 68590917 68590972 68590917 ID=Msa0567240-mRNA-1:exon:22680;Parent=Msa0567240-mRNA-1
chr4_1 five_prime_UTR 68590917 68590972 68590917 ID=Msa0567240-mRNA-1:five_prime_utr;Parent=Msa0567240-mRNA-1
chr4_1 five_prime_UTR 68590775 68590882 68590775 ID=Msa0567240-mRNA-1:five_prime_utr;Parent=Msa0567240-mRNA-1
chr4_1 five_prime_UTR 68590685 68590694 68590685 ID=Msa0567240-mRNA-1:five_prime_utr;Parent=Msa0567240-mRNA-1
chr4_1 CDS 68590536 68590684 68590536 ID=Msa0567240-mRNA-1:cds;Parent=Msa0567240-mRNA-1
chr4_1 CDS 68589668 68589799 68589668 ID=Msa0567240-mRNA-1:cds;Parent=Msa0567240-mRNA-1
chr4_1 CDS 68589000 68589401 68589000 ID=Msa0567240-mRNA-1:cds;Parent=Msa0567240-mRNA-1
chr4_1 CDS 68588080 68588218 68588080 ID=Msa0567240-mRNA-1:cds;Parent=Msa0567240-mRNA-1
chr4_1 three_prime_UTR 68587645 68588079 68587645 ID=Msa0567240-mRNA-1:three_prime_utr;Parent=Msa0567240-mRNA-1
Gene Sequence

>Msa0567240

ATGGAAGGAAACAAGTGGGGATATTCTTCAAATGAAGATATCAGTAACGATGATCATGATCATGATGATGACGTCAATCTTCTAAATGCAAGTGATGAAGAAGACGACCTTCGCTTCACATCTCATTCTTTGCCCAAATCGCAATTCAGGAACGTCAAATCCAAAGCCAGATGGAATGAAGAGATGGGAATGGCAGAGGTTATTGAGAAGAATGGAAAAATGTGGGTATCTACTGGAATAGTTCGTAGTGGCAAGATTTATACTTCAATCGAGGAGACATTGTATCTTATGGAACTAGGAGCCTTACATCTCGTAGACAGCGAAAATAGAAGTATATCTATAATAGAAATGTACGAAAAGGTTTCTGGCAGGAAGACCGGATGTTGTTGGGAGCTGTTCGAGGCCTACAGGCACCTCAAGTCTCTCGGCTACATAATTGGGCGGCATAATGTTGCTTGGAGTTTGAAGAGTATTAGAAGTTCTCAAAAACAAGTGGCTCTTGAAGGCACAGAAGAAAGCAAACAAATAGTAGACATGGGTTCCAAAGTCGAGCTTTCCATAAGTAAGTTATTTGGTGAGTTGAAGATTAATGATTTGAAGCCAGATTTTGATATTTATCTTCCAGACAGTAGGTTCAGAAAATCTTCTCCAGGTGATCCAAATTTTCTGCTGTGCTTGTCTAGGGGTCATCTGCCTTCTAGAGAAGAAATTGAAGCTCTTGAGAAACAATGTGTGGGGATTCCGTTGAAAATCTGCCTGGTCACAGAAGGAAGGGTCAGTTTCTTTCCCTTTGACAAGGTTGAACTTCCTGCTCTACCCTGA

Protein sequence

>Msa0567240

MEGNKWGYSSNEDISNDDHDHDDDVNLLNASDEEDDLRFTSHSLPKSQFRNVKSKARWNEEMGMAEVIEKNGKMWVSTGIVRSGKIYTSIEETLYLMELGALHLVDSENRSISIIEMYEKVSGRKTGCCWELFEAYRHLKSLGYIIGRHNVAWSLKSIRSSQKQVALEGTEESKQIVDMGSKVELSISKLFGELKINDLKPDFDIYLPDSRFRKSSPGDPNFLLCLSRGHLPSREEIEALEKQCVGIPLKICLVTEGRVSFFPFDKVELPALP*