AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738440 MtrunA17_Chr5g0436641 95.092 326 0 1 1 326 1 310 0.0 618
Msa0738440 MtrunA17_Chr3g0113191 90.154 325 16 1 1 325 1 309 0.0 588
Msa0738440 MtrunA17_Chr3g0113201 31.707 287 163 8 19 301 25 282 4.43e-31 118
Msa0738440 MtrunA17_Chr5g0436671 29.965 287 168 7 19 301 21 278 1.46e-28 111
Msa0738440 MtrunA17_Chr3g0079641 24.679 312 181 7 19 301 13 299 5.49e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738440 AT5G05780.1 85.494 324 31 1 1 324 1 308 0.0 560
Msa0738440 AT3G11270.1 85.047 321 32 1 1 321 1 305 0.0 552
Msa0738440 AT5G05780.2 84.568 324 31 2 1 324 1 305 0.0 550
Msa0738440 AT3G11270.2 84.112 321 32 2 1 321 1 302 0.0 541
Msa0738440 AT2G39990.1 28.151 238 154 6 19 252 30 254 2.24e-24 100
Msa0738440 AT4G26430.1 24.458 323 189 9 19 311 13 310 1.40e-20 90.9
Msa0738440 AT5G56280.1 23.053 321 192 8 19 311 13 306 6.43e-19 86.3

Find 89 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCGAGGAGCTTTGTTC+TGG 0.206038 5_1:+56213741 Msa0738440:CDS
ATACAGGATCTCATGGTTTA+AGG 0.226556 5_1:-56213191 None:intergenic
CGCGTCGTTGGAGTTCTTCT+TGG 0.238114 5_1:+56210202 Msa0738440:CDS
ATTATAACCAAAACGGGATT+TGG 0.243791 5_1:-56211340 None:intergenic
GTAGGAATTCCCAACTCTTT+AGG 0.247111 5_1:-56211373 None:intergenic
TACCTTGACCTTGTCATTGA+TGG 0.274529 5_1:+56213160 Msa0738440:CDS
TACAGCAGGAAGTTGAGATT+TGG 0.286847 5_1:+56214515 Msa0738440:exon
GACGCGTTTGCGAGTGTCTT+TGG 0.305618 5_1:-56210185 None:intergenic
TTTGGGAGGGTTGTGATACT+TGG 0.311544 5_1:+56214533 Msa0738440:three_prime_UTR
CTCTGTTGCAAGGGTGCTAA+TGG 0.335329 5_1:-56212931 None:intergenic
GCTCATGAAGTTGAGGAAAT+AGG 0.335482 5_1:+56211657 Msa0738440:CDS
TGAGATCCTGTATCATTTGC+AGG 0.345264 5_1:+56213201 Msa0738440:CDS
TTAATGAAATACATGTAATA+TGG 0.350470 5_1:+56214646 Msa0738440:three_prime_UTR
CTATGTTCCAAATCCCGTTT+TGG 0.360839 5_1:+56211333 Msa0738440:CDS
AATTTGTTGCAATAGTTGAT+AGG 0.369207 5_1:-56214811 None:intergenic
CAAATCAGTGACATTAAGAT+TGG 0.377033 5_1:-56213917 None:intergenic
ACAGCAGGAAGTTGAGATTT+GGG 0.387193 5_1:+56214516 Msa0738440:exon
GGAGCCAACTGACAACCTTC+TGG 0.390723 5_1:+56214598 Msa0738440:three_prime_UTR
ACATCAATTATAACCAAAAC+GGG 0.396892 5_1:-56211346 None:intergenic
ACTCACAGCCTTGAAGGGTT+TGG 0.398386 5_1:+56213111 Msa0738440:CDS
TCTCCGAGGAGCTTTGTTCT+GGG 0.404793 5_1:+56213742 Msa0738440:CDS
TCTTGCATCCAAACCCTTCA+AGG 0.405808 5_1:-56213119 None:intergenic
CATGAGCAGCAATTTCTGAT+TGG 0.415675 5_1:-56211641 None:intergenic
ATGACAAGGATCCTAGCATT+TGG 0.417257 5_1:+56210433 Msa0738440:CDS
CTTCTTGGTTCCTCTTTCAA+AGG 0.424962 5_1:+56210217 Msa0738440:CDS
AACATCAATTATAACCAAAA+CGG 0.431934 5_1:-56211347 None:intergenic
TGATAGGTATTTCTGTTAAA+CGG 0.435631 5_1:-56214795 None:intergenic
TAATGTCACTGATTTGATCA+AGG 0.437836 5_1:+56213924 Msa0738440:CDS
TGACATTAAGATTGGGCAGC+AGG 0.443727 5_1:-56213909 None:intergenic
GATGTTGAACCTAAAGAGTT+GGG 0.449227 5_1:+56211364 Msa0738440:CDS
CAAAGCTCCTCGGAGAACTT+TGG 0.454735 5_1:-56213735 None:intergenic
TACAGGATCTCATGGTTTAA+GGG 0.462303 5_1:-56213190 None:intergenic
TGCAAAACTCACAGCCTTGA+AGG 0.463569 5_1:+56213105 Msa0738440:CDS
TGTAGCTAAGGAGCATGTTG+TGG 0.468792 5_1:+56210615 Msa0738440:intron
TGTAATATTGCTTCTGCTCG+TGG 0.472472 5_1:+56214698 Msa0738440:three_prime_UTR
TCCTTGTCATCTTCTTCAAA+CGG 0.478344 5_1:-56210420 None:intergenic
TCTCAACTTCCTGCTGTACT+TGG 0.483401 5_1:-56214510 None:intergenic
TGATGTTGAACCTAAAGAGT+TGG 0.483855 5_1:+56211363 Msa0738440:CDS
TTCGGCTTAGGCTTGGGCAG+AGG 0.485031 5_1:+56213707 Msa0738440:intron
GTAGCTAAGGAGCATGTTGT+GGG 0.499396 5_1:+56210616 Msa0738440:intron
TCTATGTTCAAGAGAATCAA+TGG 0.505078 5_1:+56210489 Msa0738440:CDS
TGCTCAACAAAGAACATGAA+AGG 0.510479 5_1:+56214460 Msa0738440:CDS
TCGGCTTAGGCTTGGGCAGA+GGG 0.512498 5_1:+56213708 Msa0738440:intron
GTTGTGGGGTGGTATAGTAC+TGG 0.515160 5_1:+56210631 Msa0738440:CDS
CTTCCTGCTGTACTTGGTAC+AGG 0.516124 5_1:-56214504 None:intergenic
AACCAACCTGCAAATGATAC+AGG 0.522061 5_1:-56213207 None:intergenic
TGCTGTTGAGGAGGTTAAAG+AGG 0.523785 5_1:+56211408 Msa0738440:CDS
CGAGCAGAAGCAATATTACA+TGG 0.525516 5_1:-56214695 None:intergenic
GACACTCGCAAACGCGTCGT+TGG 0.526211 5_1:+56210190 Msa0738440:CDS
CTCCGAGGAGCTTTGTTCTG+GGG 0.529714 5_1:+56213743 Msa0738440:CDS
GAAAACTAATGATCAAATGC+TGG 0.532471 5_1:+56214050 Msa0738440:CDS
CCTTGTTGTTAATCAAGTTG+TGG 0.533219 5_1:-56214113 None:intergenic
GCTCAACAAAGAACATGAAA+GGG 0.533816 5_1:+56214461 Msa0738440:CDS
AAATCAGTGACATTAAGATT+GGG 0.537245 5_1:-56213916 None:intergenic
CAAAAGGCACCTCTGTTGCA+AGG 0.539561 5_1:-56212941 None:intergenic
CGGTTGTGAGCGAAGCCGCC+AGG 0.540318 5_1:-56214775 None:intergenic
ATCACGAAGAACAAAGAAAG+TGG 0.546423 5_1:+56209972 Msa0738440:five_prime_UTR
TGTTTAAAATGATCAATACA+TGG 0.546710 5_1:+56214573 Msa0738440:three_prime_UTR
TGATCAAGAAACCAAATGCT+AGG 0.549445 5_1:-56210444 None:intergenic
CAGGAAGTTGAGATTTGGGA+GGG 0.550146 5_1:+56214520 Msa0738440:exon
ACATTTGCTTAGAGATGTGA+AGG 0.560287 5_1:+56212902 Msa0738440:CDS
ATCGACGGTGCCTTTGAAAG+AGG 0.562674 5_1:-56210227 None:intergenic
GCAAAACTCACAGCCTTGAA+GGG 0.565234 5_1:+56213106 Msa0738440:CDS
AATTGCTGCTCATGAAGTTG+AGG 0.565331 5_1:+56211650 Msa0738440:CDS
ACTATGCTGAGTAAAACTAA+AGG 0.568083 5_1:-56210142 None:intergenic
GCAAATGATACAGGATCTCA+TGG 0.569112 5_1:-56213198 None:intergenic
TGCCACTCAGAAGAGTCAAA+AGG 0.570358 5_1:+56211605 Msa0738440:CDS
AAAAGCTTACTATGCTGTTG+AGG 0.571528 5_1:+56211396 Msa0738440:CDS
GTGCCTGTACCAAGTACAGC+AGG 0.578421 5_1:+56214501 Msa0738440:CDS
AACCCCAGAACAAAGCTCCT+CGG 0.586689 5_1:-56213745 None:intergenic
AGCTTACTATGCTGTTGAGG+AGG 0.588880 5_1:+56211399 Msa0738440:CDS
CATTAGCACCCTTGCAACAG+AGG 0.592118 5_1:+56212932 Msa0738440:CDS
CCACAACTTGATTAACAACA+AGG 0.604169 5_1:+56214113 Msa0738440:CDS
TTCCATCAATGACAAGGTCA+AGG 0.607781 5_1:-56213162 None:intergenic
TAAAATGATCAATACATGGA+CGG 0.610715 5_1:+56214577 Msa0738440:three_prime_UTR
GATATCACCAACAGCTACGC+CGG 0.611908 5_1:+56210247 Msa0738440:CDS
AAAACTTAAGAGTGACCAGA+AGG 0.617536 5_1:-56214613 None:intergenic
AAAAGGCACCTCTGTTGCAA+GGG 0.618690 5_1:-56212940 None:intergenic
GTGACCAGAAGGTTGTCAGT+TGG 0.622025 5_1:-56214602 None:intergenic
GCAGGAAGTTGAGATTTGGG+AGG 0.642480 5_1:+56214519 Msa0738440:exon
GCCGTTTGAAGAAGATGACA+AGG 0.651393 5_1:+56210419 Msa0738440:CDS
AATTGTACCGGCGTAGCTGT+TGG 0.654663 5_1:-56210254 None:intergenic
GTAGCTGTTGGTGATATCGA+CGG 0.656872 5_1:-56210242 None:intergenic
CTAAGGAGCATGTTGTGGGG+TGG 0.656967 5_1:+56210620 Msa0738440:CDS
CACTTCTAATGAGAGACGAT+AGG 0.662773 5_1:-56214080 None:intergenic
GAAGCTTTCCATCAATGACA+AGG 0.673682 5_1:-56213168 None:intergenic
TAGCTAAGGAGCATGTTGTG+GGG 0.682914 5_1:+56210617 Msa0738440:intron
AATACATGTAATATGGCACA+AGG 0.690752 5_1:+56214653 Msa0738440:three_prime_UTR
GGGAATGCCAAAGTTCTCCG+AGG 0.746895 5_1:+56213728 Msa0738440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGCATATTTTTTTATAT+TGG + chr5_1:56210539-56210558 Msa0738440:intron 10.0%
!!! TTTGCATATTTTTTTATATT+GGG + chr5_1:56210540-56210559 Msa0738440:intron 10.0%
!!! TAATTAAGTGTTATTAATAA+CGG - chr5_1:56212818-56212837 None:intergenic 10.0%
!! AAAGAAGAATATAAATTTAT+AGG - chr5_1:56212864-56212883 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+TGG + chr5_1:56213458-56213477 Msa0738440:intron 10.0%
!!! TATTTCTCATTTATGATTTT+TGG + chr5_1:56212771-56212790 Msa0738440:intron 15.0%
!! AATTGTATTATTTGAAAACA+AGG - chr5_1:56213800-56213819 None:intergenic 15.0%
!!! TGATTTGGTTTTATATTTAT+GGG + chr5_1:56214186-56214205 Msa0738440:intron 15.0%
!! TTAATGAAATACATGTAATA+TGG + chr5_1:56214646-56214665 Msa0738440:three_prime_UTR 15.0%
!! AATCAAAAACAAAACAAAAA+AGG - chr5_1:56214754-56214773 None:intergenic 15.0%
!! ATTGAAATTGAAAATTGTAC+CGG - chr5_1:56210269-56210288 None:intergenic 20.0%
!! TTCAATATAATTACATGTGT+CGG + chr5_1:56210297-56210316 Msa0738440:intron 20.0%
!! AAATTTGATGTGATTAAAGA+TGG + chr5_1:56210563-56210582 Msa0738440:intron 20.0%
!!! TGATTTATTTTTTGTAGCTA+AGG + chr5_1:56210603-56210622 Msa0738440:intron 20.0%
!! TTAAAAAAAAAACTATGCAG+TGG - chr5_1:56210726-56210745 None:intergenic 20.0%
!!! TTTTGTTTATTACTGCAATT+AGG + chr5_1:56210748-56210767 Msa0738440:intron 20.0%
!! TCATAAACATAGCTATAAAA+AGG - chr5_1:56210796-56210815 None:intergenic 20.0%
!! AACATCAATTATAACCAAAA+CGG - chr5_1:56211350-56211369 None:intergenic 20.0%
!! ATATTTGCAAGAAAGATAAA+AGG - chr5_1:56211447-56211466 None:intergenic 20.0%
!!! ATTTGTCTAATTTGATTTCT+GGG - chr5_1:56211748-56211767 None:intergenic 20.0%
!!! TATTTGTCTAATTTGATTTC+TGG - chr5_1:56211749-56211768 None:intergenic 20.0%
!! AAAATAAAATAATGCTGAGT+CGG + chr5_1:56212320-56212339 Msa0738440:intron 20.0%
!! ATCAATAGTTTCATAGATTA+TGG - chr5_1:56213234-56213253 None:intergenic 20.0%
!!! CACATAGTTTAATTTAAAAC+TGG + chr5_1:56213315-56213334 Msa0738440:intron 20.0%
!!! CTGATTTGGTTTTATATTTA+TGG + chr5_1:56214185-56214204 Msa0738440:intron 20.0%
!!! GTATTGATCATTTTAAACAA+CGG - chr5_1:56214572-56214591 None:intergenic 20.0%
!!! TGTTTAAAATGATCAATACA+TGG + chr5_1:56214573-56214592 Msa0738440:three_prime_UTR 20.0%
! ATTCACACATACCAAAAATT+AGG + chr5_1:56210024-56210043 Msa0738440:five_prime_UTR 25.0%
! TTCACACATACCAAAAATTA+GGG + chr5_1:56210025-56210044 Msa0738440:five_prime_UTR 25.0%
! TAAAAACGCAACAAATTTCA+TGG + chr5_1:56210092-56210111 Msa0738440:CDS 25.0%
! GCACTGTTAAAAACAAATAA+AGG - chr5_1:56210401-56210420 None:intergenic 25.0%
! TGGTATGAAAGATTATTGTT+TGG + chr5_1:56210509-56210528 Msa0738440:intron 25.0%
!! TATAGCTTTTGCAAAAAATG+CGG + chr5_1:56210910-56210929 Msa0738440:intron 25.0%
! AATAGCAGTTTGTCTAAATT+TGG - chr5_1:56210984-56211003 None:intergenic 25.0%
! ACAACCAATTATTAATCCTT+AGG - chr5_1:56211223-56211242 None:intergenic 25.0%
! GAACATCAATAATCAATAAG+AGG - chr5_1:56211289-56211308 None:intergenic 25.0%
! ACATCAATTATAACCAAAAC+GGG - chr5_1:56211349-56211368 None:intergenic 25.0%
! GAAACTTAATTGTTAGATGT+AGG + chr5_1:56211551-56211570 Msa0738440:intron 25.0%
! TTGCATCATGAACAAAATAA+AGG - chr5_1:56211725-56211744 None:intergenic 25.0%
! AGAGAAACAAAATGAATTAG+TGG - chr5_1:56211967-56211986 None:intergenic 25.0%
! TATTAAGTGAAGAGAGAATA+TGG - chr5_1:56212430-56212449 None:intergenic 25.0%
! TGTCTCACTATTTAAAAATG+AGG + chr5_1:56212503-56212522 Msa0738440:intron 25.0%
! AATGAGGATAATGATTATGT+TGG + chr5_1:56212519-56212538 Msa0738440:intron 25.0%
! ATGAGGATAATGATTATGTT+GGG + chr5_1:56212520-56212539 Msa0738440:intron 25.0%
! TGATTAGAACTATCAGTTAT+TGG + chr5_1:56212574-56212593 Msa0738440:intron 25.0%
! ATTGAAAAATACACCATTAG+AGG - chr5_1:56213016-56213035 None:intergenic 25.0%
!!! GATTATTCTTTTTTGACACA+AGG + chr5_1:56213046-56213065 Msa0738440:intron 25.0%
!! ATCAGATTTTTGCTTTCTTT+AGG + chr5_1:56213390-56213409 Msa0738440:intron 25.0%
!! TCAGATTTTTGCTTTCTTTA+GGG + chr5_1:56213391-56213410 Msa0738440:intron 25.0%
! AAATCAGTGACATTAAGATT+GGG - chr5_1:56213919-56213938 None:intergenic 25.0%
! AATCAATCAATAATCCATAG+AGG - chr5_1:56214011-56214030 None:intergenic 25.0%
!! TGAGCTTTAGTTAAATTGTT+TGG + chr5_1:56214296-56214315 Msa0738440:intron 25.0%
!! GAGCTTTAGTTAAATTGTTT+GGG + chr5_1:56214297-56214316 Msa0738440:intron 25.0%
!! AAGCTTTTCTTATGTAACAA+AGG - chr5_1:56214372-56214391 None:intergenic 25.0%
! TAAAATGATCAATACATGGA+CGG + chr5_1:56214577-56214596 Msa0738440:three_prime_UTR 25.0%
!!! TTGTTTTGTTTTTGATTACC+TGG + chr5_1:56214757-56214776 Msa0738440:three_prime_UTR 25.0%
!! TGATAGGTATTTCTGTTAAA+CGG - chr5_1:56214798-56214817 None:intergenic 25.0%
!!! AATTTGTTGCAATAGTTGAT+AGG - chr5_1:56214814-56214833 None:intergenic 25.0%
! GTGGTTTAAACCCTAATTTT+TGG - chr5_1:56210038-56210057 None:intergenic 30.0%
!! TTGTTGTTGTGAATTTTCAG+TGG - chr5_1:56210057-56210076 None:intergenic 30.0%
ATTCACAACAACAACAACAA+TGG + chr5_1:56210063-56210082 Msa0738440:exon 30.0%
ACTATGCTGAGTAAAACTAA+AGG - chr5_1:56210145-56210164 None:intergenic 30.0%
TCTATGTTCAAGAGAATCAA+TGG + chr5_1:56210489-56210508 Msa0738440:CDS 30.0%
! AAAACTATGCAGTGGATTTA+AGG - chr5_1:56210718-56210737 None:intergenic 30.0%
ATAGCTATGTTTATGACTCT+AGG + chr5_1:56210800-56210819 Msa0738440:intron 30.0%
TGTGGCATAGTAATTTAAAG+AGG + chr5_1:56210879-56210898 Msa0738440:intron 30.0%
TCATACTAAATAGTGTGTTG+CGG - chr5_1:56211010-56211029 None:intergenic 30.0%
TAAAATTCCGCTACACAATA+GGG - chr5_1:56211057-56211076 None:intergenic 30.0%
GCAACCTAAGGATTAATAAT+TGG + chr5_1:56211216-56211235 Msa0738440:intron 30.0%
TTGATGTTCGTCTCAATTTA+TGG + chr5_1:56211300-56211319 Msa0738440:intron 30.0%
ATTATAACCAAAACGGGATT+TGG - chr5_1:56211343-56211362 None:intergenic 30.0%
AATCATTCTGCTTTATGTGA+TGG + chr5_1:56211502-56211521 Msa0738440:intron 30.0%
TAGATGTAGGAACTTAAGAA+TGG + chr5_1:56211564-56211583 Msa0738440:intron 30.0%
AAGAGAAACTGTTATGAAAC+TGG + chr5_1:56211778-56211797 Msa0738440:intron 30.0%
AAAAATATGGAGTGTATGAG+AGG - chr5_1:56212018-56212037 None:intergenic 30.0%
! TCTCATACACTCCATATTTT+TGG + chr5_1:56212017-56212036 Msa0738440:intron 30.0%
TAATGACCACACCAAAAATA+TGG - chr5_1:56212031-56212050 None:intergenic 30.0%
TATTGAACAACACTGTCATA+TGG - chr5_1:56212115-56212134 None:intergenic 30.0%
TGAGGATAATGATTATGTTG+GGG + chr5_1:56212521-56212540 Msa0738440:intron 30.0%
TTGCTTCTAATTTCTGTTTC+TGG + chr5_1:56212630-56212649 Msa0738440:intron 30.0%
GAAATAGCAGATAGTGTAAT+GGG - chr5_1:56212757-56212776 None:intergenic 30.0%
AGAAATAGCAGATAGTGTAA+TGG - chr5_1:56212758-56212777 None:intergenic 30.0%
GTATAACAAAAGTGAGCAAA+AGG - chr5_1:56212960-56212979 None:intergenic 30.0%
!!! CTTTTTTGACACAAGGATAA+AGG + chr5_1:56213053-56213072 Msa0738440:intron 30.0%
CATTTATCAACCTAAATTCC+TGG - chr5_1:56213279-56213298 None:intergenic 30.0%
AGCAAAAATCTGATCATTTC+AGG - chr5_1:56213384-56213403 None:intergenic 30.0%
AAAAAAACTTAGGGTGTGTT+TGG - chr5_1:56213540-56213559 None:intergenic 30.0%
!!! AACACACCCTAAGTTTTTTT+TGG + chr5_1:56213540-56213559 Msa0738440:intron 30.0%
!!! ACACACCCTAAGTTTTTTTT+GGG + chr5_1:56213541-56213560 Msa0738440:intron 30.0%
ACACACCCAAAAAAAACTTA+GGG - chr5_1:56213549-56213568 None:intergenic 30.0%
AACACACCCAAAAAAAACTT+AGG - chr5_1:56213550-56213569 None:intergenic 30.0%
!!! GTTTTTTTTGGGTGTGTTTA+TGG + chr5_1:56213552-56213571 Msa0738440:intron 30.0%
! GTTAGTCTGTTTGTTAGTTT+CGG + chr5_1:56213689-56213708 Msa0738440:intron 30.0%
TTCTCCATGTTATCTTGATT+TGG + chr5_1:56213819-56213838 Msa0738440:intron 30.0%
TCTCCATGTTATCTTGATTT+GGG + chr5_1:56213820-56213839 Msa0738440:intron 30.0%
GACATGGTAAAACACAATAT+TGG - chr5_1:56213861-56213880 None:intergenic 30.0%
TAGCAAAATAAAACAGGACA+TGG - chr5_1:56213877-56213896 None:intergenic 30.0%
!!! ATGTCCTGTTTTATTTTGCT+AGG + chr5_1:56213876-56213895 Msa0738440:intron 30.0%
CAAATCAGTGACATTAAGAT+TGG - chr5_1:56213920-56213939 None:intergenic 30.0%
!! TAATGTCACTGATTTGATCA+AGG + chr5_1:56213924-56213943 Msa0738440:CDS 30.0%
GAAAACTAATGATCAAATGC+TGG + chr5_1:56214050-56214069 Msa0738440:CDS 30.0%
AAATCAATTTAGTCCTCCTT+AGG + chr5_1:56214252-56214271 Msa0738440:intron 30.0%
AATCAATTTAGTCCTCCTTA+GGG + chr5_1:56214253-56214272 Msa0738440:intron 30.0%
AAAGCTCAAGAAACAAAACA+TGG - chr5_1:56214284-56214303 None:intergenic 30.0%
TGAATCAAAGTTTAGTATCC+AGG + chr5_1:56214346-56214365 Msa0738440:intron 30.0%
! TTGTGATACTTGGATTTTGA+AGG + chr5_1:56214543-56214562 Msa0738440:three_prime_UTR 30.0%
! TGTGATACTTGGATTTTGAA+GGG + chr5_1:56214544-56214563 Msa0738440:three_prime_UTR 30.0%
AATACATGTAATATGGCACA+AGG + chr5_1:56214653-56214672 Msa0738440:three_prime_UTR 30.0%
!!! TTTTGTTTTTGATTACCTGG+CGG + chr5_1:56214760-56214779 Msa0738440:three_prime_UTR 30.0%
ATCACGAAGAACAAAGAAAG+TGG + chr5_1:56209972-56209991 Msa0738440:five_prime_UTR 35.0%
TCCTTGTCATCTTCTTCAAA+CGG - chr5_1:56210423-56210442 None:intergenic 35.0%
TGATCAAGAAACCAAATGCT+AGG - chr5_1:56210447-56210466 None:intergenic 35.0%
! AGATCATTTTCTCGCAGTTT+CGG - chr5_1:56210658-56210677 None:intergenic 35.0%
TAATTATACCGAGTGTAGCT+TGG + chr5_1:56210830-56210849 Msa0738440:intron 35.0%
TCTAAATTTGGCTATGCTAG+AGG - chr5_1:56210972-56210991 None:intergenic 35.0%
CTAAAATTCCGCTACACAAT+AGG - chr5_1:56211058-56211077 None:intergenic 35.0%
TGATGTTGAACCTAAAGAGT+TGG + chr5_1:56211363-56211382 Msa0738440:CDS 35.0%
GATGTTGAACCTAAAGAGTT+GGG + chr5_1:56211364-56211383 Msa0738440:CDS 35.0%
! ACAGCATAGTAAGCTTTTGT+AGG - chr5_1:56211394-56211413 None:intergenic 35.0%
AAAAGCTTACTATGCTGTTG+AGG + chr5_1:56211396-56211415 Msa0738440:CDS 35.0%
! ATTCTGCTTTATGTGATGGA+AGG + chr5_1:56211506-56211525 Msa0738440:intron 35.0%
TTGAGGAAATAGGTATGTCA+TGG + chr5_1:56211667-56211686 Msa0738440:intron 35.0%
GAAATAGGTATGTCATGGAA+TGG + chr5_1:56211672-56211691 Msa0738440:intron 35.0%
GTATGTCATGGAATGGAATA+CGG + chr5_1:56211679-56211698 Msa0738440:intron 35.0%
CTTTGCTCTGTAGATAGTTT+GGG - chr5_1:56211849-56211868 None:intergenic 35.0%
ATACATATAGGAAAGGAGTG+GGG - chr5_1:56211936-56211955 None:intergenic 35.0%
CATACATATAGGAAAGGAGT+GGG - chr5_1:56211937-56211956 None:intergenic 35.0%
TCATACATATAGGAAAGGAG+TGG - chr5_1:56211938-56211957 None:intergenic 35.0%
GTGTGTCATACATATAGGAA+AGG - chr5_1:56211943-56211962 None:intergenic 35.0%
!!! TACACTCCATATTTTTGGTG+TGG + chr5_1:56212022-56212041 Msa0738440:intron 35.0%
! TGACAGTGTTGTTCAATAAC+CGG + chr5_1:56212117-56212136 Msa0738440:intron 35.0%
CTGCTATGCTATTACATATC+AGG + chr5_1:56212147-56212166 Msa0738440:intron 35.0%
AGCGGTTATTGCTTACATAT+CGG + chr5_1:56212255-56212274 Msa0738440:intron 35.0%
! TTACCTAGGTCATAGGTTTT+AGG - chr5_1:56212371-56212390 None:intergenic 35.0%
TTAGTGATGAGAGTTTACCT+AGG - chr5_1:56212385-56212404 None:intergenic 35.0%
TGAAGAGAGAATATGGAGAT+TGG - chr5_1:56212423-56212442 None:intergenic 35.0%
TGAGGATTCATTGAAGTTGA+AGG + chr5_1:56212477-56212496 Msa0738440:intron 35.0%
TAATGATTATGTTGGGGAAG+AGG + chr5_1:56212527-56212546 Msa0738440:intron 35.0%
!! ATAGTGTAATGGGCAAATAG+TGG - chr5_1:56212747-56212766 None:intergenic 35.0%
ACATTTGCTTAGAGATGTGA+AGG + chr5_1:56212902-56212921 Msa0738440:CDS 35.0%
!! TACATTGATTCCTTTCGAGT+TGG + chr5_1:56212977-56212996 Msa0738440:intron 35.0%
AAAAATACACCATTAGAGGC+AGG - chr5_1:56213012-56213031 None:intergenic 35.0%
GACAATCTCGTTTGTCATAT+AGG + chr5_1:56213078-56213097 Msa0738440:intron 35.0%
TACAGGATCTCATGGTTTAA+GGG - chr5_1:56213193-56213212 None:intergenic 35.0%
ATACAGGATCTCATGGTTTA+AGG - chr5_1:56213194-56213213 None:intergenic 35.0%
CTATGAAACTATTGATGCTC+TGG + chr5_1:56213238-56213257 Msa0738440:intron 35.0%
TTTGGTTGTAGGGTTTAGAA+GGG + chr5_1:56213418-56213437 Msa0738440:intron 35.0%
GTTTATGGTAAAAAGCTCTG+TGG + chr5_1:56213567-56213586 Msa0738440:intron 35.0%
GAACCCAAATCAAGATAACA+TGG - chr5_1:56213826-56213845 None:intergenic 35.0%
ACGTCCTAGCAAAATAAAAC+AGG - chr5_1:56213883-56213902 None:intergenic 35.0%
GTGTTATGCAATTTCCTCTA+TGG + chr5_1:56213994-56214013 Msa0738440:intron 35.0%
!! CCTTGTTGTTAATCAAGTTG+TGG - chr5_1:56214116-56214135 None:intergenic 35.0%
CCACAACTTGATTAACAACA+AGG + chr5_1:56214113-56214132 Msa0738440:CDS 35.0%
! GTTATTGTTGTCTGCTGATT+TGG + chr5_1:56214171-56214190 Msa0738440:intron 35.0%
! TGGGTTGAATCGTTTGAAAT+TGG + chr5_1:56214316-56214335 Msa0738440:intron 35.0%
TTTCTTATGTAACAAAGGCC+TGG - chr5_1:56214367-56214386 None:intergenic 35.0%
TGCTCAACAAAGAACATGAA+AGG + chr5_1:56214460-56214479 Msa0738440:CDS 35.0%
GCTCAACAAAGAACATGAAA+GGG + chr5_1:56214461-56214480 Msa0738440:CDS 35.0%
AAAACTTAAGAGTGACCAGA+AGG - chr5_1:56214616-56214635 None:intergenic 35.0%
! CACTCTTAAGTTTTTCTGCA+CGG + chr5_1:56214622-56214641 Msa0738440:three_prime_UTR 35.0%
! ACTCTTAAGTTTTTCTGCAC+GGG + chr5_1:56214623-56214642 Msa0738440:three_prime_UTR 35.0%
CTTCTTGGTTCCTCTTTCAA+AGG + chr5_1:56210217-56210236 Msa0738440:CDS 40.0%
! GCACTGACACTACTGATTAA+AGG - chr5_1:56210340-56210359 None:intergenic 40.0%
ATGACAAGGATCCTAGCATT+TGG + chr5_1:56210433-56210452 Msa0738440:CDS 40.0%
GCAATTAGGAGCTTATGCTA+CGG + chr5_1:56210762-56210781 Msa0738440:intron 40.0%
TGGGTTTGGCAAAATTACTG+TGG + chr5_1:56210861-56210880 Msa0738440:intron 40.0%
! GGTCAGTGTTGTTAAATAGC+AGG + chr5_1:56210931-56210950 Msa0738440:intron 40.0%
TTTGTAGCCCTATTGTGTAG+CGG + chr5_1:56211047-56211066 Msa0738440:intron 40.0%
!! ACTTTGGATTGGCCGAATTA+CGG - chr5_1:56211133-56211152 None:intergenic 40.0%
ATATGACTATGCCACATCAG+AGG - chr5_1:56211157-56211176 None:intergenic 40.0%
AGGTTGCGAGAAAATGTCAT+GGG - chr5_1:56211203-56211222 None:intergenic 40.0%
TAGGTTGCGAGAAAATGTCA+TGG - chr5_1:56211204-56211223 None:intergenic 40.0%
! TGACATTTTCTCGCAACCTA+AGG + chr5_1:56211204-56211223 Msa0738440:intron 40.0%
! CTATGTTCCAAATCCCGTTT+TGG + chr5_1:56211333-56211352 Msa0738440:CDS 40.0%
GTAGGAATTCCCAACTCTTT+AGG - chr5_1:56211376-56211395 None:intergenic 40.0%
CATGAGCAGCAATTTCTGAT+TGG - chr5_1:56211644-56211663 None:intergenic 40.0%
AATTGCTGCTCATGAAGTTG+AGG + chr5_1:56211650-56211669 Msa0738440:CDS 40.0%
GCTCATGAAGTTGAGGAAAT+AGG + chr5_1:56211657-56211676 Msa0738440:CDS 40.0%
GCTTTGCTCTGTAGATAGTT+TGG - chr5_1:56211850-56211869 None:intergenic 40.0%
TACATATAGGAAAGGAGTGG+GGG - chr5_1:56211935-56211954 None:intergenic 40.0%
GTGGTGTGTGTCATACATAT+AGG - chr5_1:56211948-56211967 None:intergenic 40.0%
AACAACACTGTCATATGGAC+AGG - chr5_1:56212110-56212129 None:intergenic 40.0%
!! ATCGACTTTCGTTTTCGTTG+CGG - chr5_1:56212184-56212203 None:intergenic 40.0%
ACTCCTAAAACCTATGACCT+AGG + chr5_1:56212365-56212384 Msa0738440:intron 40.0%
TGAGAGTTTACCTAGGTCAT+AGG - chr5_1:56212378-56212397 None:intergenic 40.0%
TCTCATCACTAAACTGCCTT+GGG + chr5_1:56212393-56212412 Msa0738440:intron 40.0%
CAGAATCAATGACGTGTAAG+AGG - chr5_1:56212459-56212478 None:intergenic 40.0%
!! CTTACACGTCATTGATTCTG+AGG + chr5_1:56212459-56212478 Msa0738440:intron 40.0%
TGGGGAAGAGGAGAATAATT+TGG + chr5_1:56212539-56212558 Msa0738440:intron 40.0%
GGGGAAGAGGAGAATAATTT+GGG + chr5_1:56212540-56212559 Msa0738440:intron 40.0%
TTTGGCGATCAGCTAATTTC+TGG + chr5_1:56212789-56212808 Msa0738440:intron 40.0%
TTGGCGATCAGCTAATTTCT+GGG + chr5_1:56212790-56212809 Msa0738440:intron 40.0%
TATTCTTCTTTCCCTTGTGC+AGG + chr5_1:56212873-56212892 Msa0738440:intron 40.0%
GACAACAAAACCAACTCGAA+AGG - chr5_1:56212990-56213009 None:intergenic 40.0%
!! TTTTGTTGTCCTGCCTCTAA+TGG + chr5_1:56213000-56213019 Msa0738440:intron 40.0%
TACCTTGACCTTGTCATTGA+TGG + chr5_1:56213160-56213179 Msa0738440:CDS 40.0%
TTCCATCAATGACAAGGTCA+AGG - chr5_1:56213165-56213184 None:intergenic 40.0%
GAAGCTTTCCATCAATGACA+AGG - chr5_1:56213171-56213190 None:intergenic 40.0%
GCAAATGATACAGGATCTCA+TGG - chr5_1:56213201-56213220 None:intergenic 40.0%
TGAGATCCTGTATCATTTGC+AGG + chr5_1:56213201-56213220 Msa0738440:CDS 40.0%
ATCCTGTATCATTTGCAGGT+TGG + chr5_1:56213205-56213224 Msa0738440:intron 40.0%
AACCAACCTGCAAATGATAC+AGG - chr5_1:56213210-56213229 None:intergenic 40.0%
TGAAACTATTGATGCTCTGG+CGG + chr5_1:56213241-56213260 Msa0738440:intron 40.0%
ACCAAATGGTCCAGGAATTT+AGG + chr5_1:56213266-56213285 Msa0738440:intron 40.0%
ACCTAAATTCCTGGACCATT+TGG - chr5_1:56213270-56213289 None:intergenic 40.0%
!! TGCTTTCTTTAGGGTGTGTT+TGG + chr5_1:56213400-56213419 Msa0738440:intron 40.0%
! TTTAGGGTGTGTTTGGTTGT+AGG + chr5_1:56213407-56213426 Msa0738440:intron 40.0%
TTAGGGTGTGTTTGGTTGTA+GGG + chr5_1:56213408-56213427 Msa0738440:intron 40.0%
GTTTGGTTGTAGGGTTTAGA+AGG + chr5_1:56213417-56213436 Msa0738440:intron 40.0%
TTGGTTGTAGGGTTTAGAAG+GGG + chr5_1:56213419-56213438 Msa0738440:intron 40.0%
TTGAGGGTTTAGGAGAAGAA+GGG - chr5_1:56213516-56213535 None:intergenic 40.0%
ATTGAGGGTTTAGGAGAAGA+AGG - chr5_1:56213517-56213536 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr5_1:56213526-56213545 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr5_1:56213532-56213551 None:intergenic 40.0%
! CTGTTTGTTAGTTTCGGCTT+AGG + chr5_1:56213695-56213714 Msa0738440:intron 40.0%
! GATTTGATCAAGGCTTTTGC+AGG + chr5_1:56213934-56213953 Msa0738440:CDS 40.0%
CACTTCTAATGAGAGACGAT+AGG - chr5_1:56214083-56214102 None:intergenic 40.0%
CAAAACATGGTAAAGCCCTA+AGG - chr5_1:56214271-56214290 None:intergenic 40.0%
TACAGCAGGAAGTTGAGATT+TGG + chr5_1:56214515-56214534 Msa0738440:exon 40.0%
ACAGCAGGAAGTTGAGATTT+GGG + chr5_1:56214516-56214535 Msa0738440:exon 40.0%
CGAGCAGAAGCAATATTACA+TGG - chr5_1:56214698-56214717 None:intergenic 40.0%
TGTAATATTGCTTCTGCTCG+TGG + chr5_1:56214698-56214717 Msa0738440:three_prime_UTR 40.0%
!! GTAGCTGTTGGTGATATCGA+CGG - chr5_1:56210245-56210264 None:intergenic 45.0%
GCCGTTTGAAGAAGATGACA+AGG + chr5_1:56210419-56210438 Msa0738440:CDS 45.0%
! TGTAGCTAAGGAGCATGTTG+TGG + chr5_1:56210615-56210634 Msa0738440:intron 45.0%
! GTAGCTAAGGAGCATGTTGT+GGG + chr5_1:56210616-56210635 Msa0738440:intron 45.0%
! TAGCTAAGGAGCATGTTGTG+GGG + chr5_1:56210617-56210636 Msa0738440:intron 45.0%
TATACCGAGTGTAGCTTGGT+TGG + chr5_1:56210834-56210853 Msa0738440:intron 45.0%
ATACCGAGTGTAGCTTGGTT+GGG + chr5_1:56210835-56210854 Msa0738440:intron 45.0%
TGCCATTGCTCACCGTAATT+CGG + chr5_1:56211118-56211137 Msa0738440:intron 45.0%
!! ACATCAGAGGCACTTTGGAT+TGG - chr5_1:56211144-56211163 None:intergenic 45.0%
! AATCCAAAGTGCCTCTGATG+TGG + chr5_1:56211143-56211162 Msa0738440:intron 45.0%
AGCTTACTATGCTGTTGAGG+AGG + chr5_1:56211399-56211418 Msa0738440:CDS 45.0%
TGCTGTTGAGGAGGTTAAAG+AGG + chr5_1:56211408-56211427 Msa0738440:CDS 45.0%
TGTTGAGGAGGTTAAAGAGG+TGG + chr5_1:56211411-56211430 Msa0738440:intron 45.0%
GTTGAGGAGGTTAAAGAGGT+GGG + chr5_1:56211412-56211431 Msa0738440:intron 45.0%
TGCCACTCAGAAGAGTCAAA+AGG + chr5_1:56211605-56211624 Msa0738440:CDS 45.0%
!! GACCTTTTGACTCTTCTGAG+TGG - chr5_1:56211610-56211629 None:intergenic 45.0%
TCACAGAGAATATGCTTCCC+TGG + chr5_1:56211871-56211890 Msa0738440:intron 45.0%
AGGGAACGCAATTGTCTGTT+AGG - chr5_1:56211897-56211916 None:intergenic 45.0%
AGACAATTGCGTTCCCTTTC+TGG + chr5_1:56211900-56211919 Msa0738440:intron 45.0%
ATAGCATAGCAGCGCTATAC+CGG - chr5_1:56212139-56212158 None:intergenic 45.0%
TTCCACTACCACTGCAATAG+CGG + chr5_1:56212216-56212235 Msa0738440:intron 45.0%
ATGCTGAGTCGGTGATTAGA+TGG + chr5_1:56212331-56212350 Msa0738440:intron 45.0%
TGCTGAGTCGGTGATTAGAT+GGG + chr5_1:56212332-56212351 Msa0738440:intron 45.0%
CTCTCATCACTAAACTGCCT+TGG + chr5_1:56212392-56212411 Msa0738440:intron 45.0%
!! GTGTAATGGGCAAATAGTGG+AGG - chr5_1:56212744-56212763 None:intergenic 45.0%
AATGTTCCACTCCTGCACAA+GGG - chr5_1:56212887-56212906 None:intergenic 45.0%
AAATGTTCCACTCCTGCACA+AGG - chr5_1:56212888-56212907 None:intergenic 45.0%
!! AAAAGGCACCTCTGTTGCAA+GGG - chr5_1:56212943-56212962 None:intergenic 45.0%
TGCAAAACTCACAGCCTTGA+AGG + chr5_1:56213105-56213124 Msa0738440:CDS 45.0%
GCAAAACTCACAGCCTTGAA+GGG + chr5_1:56213106-56213125 Msa0738440:CDS 45.0%
TCTTGCATCCAAACCCTTCA+AGG - chr5_1:56213122-56213141 None:intergenic 45.0%
TTGTAGGGTTTAGAAGGGGA+AGG + chr5_1:56213423-56213442 Msa0738440:intron 45.0%
TGTAGGGTTTAGAAGGGGAA+GGG + chr5_1:56213424-56213443 Msa0738440:intron 45.0%
CTTAGGGTGTGTTTGGATTG+AGG - chr5_1:56213533-56213552 None:intergenic 45.0%
AAAGCTCTGTGGATAGTCAG+AGG + chr5_1:56213578-56213597 Msa0738440:intron 45.0%
!! TGAGCTAGCAAGTTGGTTAG+AGG + chr5_1:56213601-56213620 Msa0738440:intron 45.0%
!! GAGCTAGCAAGTTGGTTAGA+GGG + chr5_1:56213602-56213621 Msa0738440:intron 45.0%
!! AGCTAGCAAGTTGGTTAGAG+GGG + chr5_1:56213603-56213622 Msa0738440:intron 45.0%
GTAAACGAGGTGTGTGAGAA+GGG + chr5_1:56213656-56213675 Msa0738440:intron 45.0%
GTGTGAGAAGGGAAATGAGA+TGG + chr5_1:56213667-56213686 Msa0738440:intron 45.0%
! TGTTAGTTTCGGCTTAGGCT+TGG + chr5_1:56213700-56213719 Msa0738440:intron 45.0%
! GTTAGTTTCGGCTTAGGCTT+GGG + chr5_1:56213701-56213720 Msa0738440:intron 45.0%
!! GAGCTTTGTTCTGGGGTTAT+TGG + chr5_1:56213750-56213769 Msa0738440:intron 45.0%
TGACATTAAGATTGGGCAGC+AGG - chr5_1:56213912-56213931 None:intergenic 45.0%
AACATGGTAAAGCCCTAAGG+AGG - chr5_1:56214268-56214287 None:intergenic 45.0%
TCTCAACTTCCTGCTGTACT+TGG - chr5_1:56214513-56214532 None:intergenic 45.0%
CAGGAAGTTGAGATTTGGGA+GGG + chr5_1:56214520-56214539 Msa0738440:exon 45.0%
TTTGGGAGGGTTGTGATACT+TGG + chr5_1:56214533-56214552 Msa0738440:three_prime_UTR 45.0%
! ATCGACGGTGCCTTTGAAAG+AGG - chr5_1:56210230-56210249 None:intergenic 50.0%
GATATCACCAACAGCTACGC+CGG + chr5_1:56210247-56210266 Msa0738440:CDS 50.0%
! AATTGTACCGGCGTAGCTGT+TGG - chr5_1:56210257-56210276 None:intergenic 50.0%
GTTGTGGGGTGGTATAGTAC+TGG + chr5_1:56210631-56210650 Msa0738440:CDS 50.0%
ACTGTGTCAATCGCGGAAAG+TGG - chr5_1:56211095-56211114 None:intergenic 50.0%
!! ATGCCACATCAGAGGCACTT+TGG - chr5_1:56211149-56211168 None:intergenic 50.0%
CGCAATTGTCTGTTAGGCCA+GGG - chr5_1:56211891-56211910 None:intergenic 50.0%
ACGCAATTGTCTGTTAGGCC+AGG - chr5_1:56211892-56211911 None:intergenic 50.0%
TGCCACCTCACCATTCTTTC+TGG + chr5_1:56211988-56212007 Msa0738440:intron 50.0%
CTCCAGAAAGAATGGTGAGG+TGG - chr5_1:56211993-56212012 None:intergenic 50.0%
GAGCTCCAGAAAGAATGGTG+AGG - chr5_1:56211996-56212015 None:intergenic 50.0%
GAGAGGAGCTCCAGAAAGAA+TGG - chr5_1:56212001-56212020 None:intergenic 50.0%
ACTACCACTGCAATAGCGGT+GGG + chr5_1:56212220-56212239 Msa0738440:intron 50.0%
TGCAATAGCGGTGGGCATAT+TGG + chr5_1:56212228-56212247 Msa0738440:intron 50.0%
GCTGAGTCGGTGATTAGATG+GGG + chr5_1:56212333-56212352 Msa0738440:intron 50.0%
! TATGGAGATTGGAGTGCCCA+AGG - chr5_1:56212412-56212431 None:intergenic 50.0%
TTCTTTCCCTTGTGCAGGAG+TGG + chr5_1:56212878-56212897 Msa0738440:intron 50.0%
!! CTCTGTTGCAAGGGTGCTAA+TGG - chr5_1:56212934-56212953 None:intergenic 50.0%
CATTAGCACCCTTGCAACAG+AGG + chr5_1:56212932-56212951 Msa0738440:CDS 50.0%
!! CAAAAGGCACCTCTGTTGCA+AGG - chr5_1:56212944-56212963 None:intergenic 50.0%
ACTCACAGCCTTGAAGGGTT+TGG + chr5_1:56213111-56213130 Msa0738440:CDS 50.0%
ATGCTCTGGCGGTTACCAAA+TGG + chr5_1:56213252-56213271 Msa0738440:intron 50.0%
GTAGGGTTTAGAAGGGGAAG+GGG + chr5_1:56213425-56213444 Msa0738440:intron 50.0%
TAGGGTTTAGAAGGGGAAGG+GGG + chr5_1:56213426-56213445 Msa0738440:intron 50.0%
GGTTTAGGAGAAGAAGGGAG+GGG - chr5_1:56213511-56213530 None:intergenic 50.0%
GGGTTTAGGAGAAGAAGGGA+GGG - chr5_1:56213512-56213531 None:intergenic 50.0%
AGGGTTTAGGAGAAGAAGGG+AGG - chr5_1:56213513-56213532 None:intergenic 50.0%
TCAGAGGTGAGCTAGCAAGT+TGG + chr5_1:56213594-56213613 Msa0738440:intron 50.0%
!! GCTAGCAAGTTGGTTAGAGG+GGG + chr5_1:56213604-56213623 Msa0738440:intron 50.0%
AGAGAGGGAACACGTGGAAT+CGG + chr5_1:56213629-56213648 Msa0738440:intron 50.0%
TGGAATCGGAAGGGTAAACG+AGG + chr5_1:56213643-56213662 Msa0738440:intron 50.0%
GGTAAACGAGGTGTGTGAGA+AGG + chr5_1:56213655-56213674 Msa0738440:intron 50.0%
CAAAGCTCCTCGGAGAACTT+TGG - chr5_1:56213738-56213757 None:intergenic 50.0%
!! TTCTCCGAGGAGCTTTGTTC+TGG + chr5_1:56213741-56213760 Msa0738440:CDS 50.0%
!! TCTCCGAGGAGCTTTGTTCT+GGG + chr5_1:56213742-56213761 Msa0738440:CDS 50.0%
AACCCCAGAACAAAGCTCCT+CGG - chr5_1:56213748-56213767 None:intergenic 50.0%
CTTCCTGCTGTACTTGGTAC+AGG - chr5_1:56214507-56214526 None:intergenic 50.0%
GCAGGAAGTTGAGATTTGGG+AGG + chr5_1:56214519-56214538 Msa0738440:exon 50.0%
GTGACCAGAAGGTTGTCAGT+TGG - chr5_1:56214605-56214624 None:intergenic 50.0%
GACGCGTTTGCGAGTGTCTT+TGG - chr5_1:56210188-56210207 None:intergenic 55.0%
CGCGTCGTTGGAGTTCTTCT+TGG + chr5_1:56210202-56210221 Msa0738440:CDS 55.0%
! CTAAGGAGCATGTTGTGGGG+TGG + chr5_1:56210620-56210639 Msa0738440:CDS 55.0%
CCACCCAACCAAGCTACACT+CGG - chr5_1:56210841-56210860 None:intergenic 55.0%
AGTGTAGCTTGGTTGGGTGG+TGG + chr5_1:56210841-56210860 Msa0738440:intron 55.0%
GTGTAGCTTGGTTGGGTGGT+GGG + chr5_1:56210842-56210861 Msa0738440:intron 55.0%
GGCACTCACTGTGTCAATCG+CGG - chr5_1:56211102-56211121 None:intergenic 55.0%
GGCCGAATTACGGTGAGCAA+TGG - chr5_1:56211123-56211142 None:intergenic 55.0%
GGGGAGTTAGTGGCCAGAAA+GGG - chr5_1:56211916-56211935 None:intergenic 55.0%
GAAAGGAGTGGGGGAGTTAG+TGG - chr5_1:56211926-56211945 None:intergenic 55.0%
CACCGCTATTGCAGTGGTAG+TGG - chr5_1:56212221-56212240 None:intergenic 55.0%
CACTACCACTGCAATAGCGG+TGG + chr5_1:56212219-56212238 Msa0738440:intron 55.0%
TATGCCCACCGCTATTGCAG+TGG - chr5_1:56212227-56212246 None:intergenic 55.0%
GGTGGGCATATTGGCGATAG+CGG + chr5_1:56212237-56212256 Msa0738440:intron 55.0%
TGGCGGTTACCAAATGGTCC+AGG + chr5_1:56213258-56213277 Msa0738440:intron 55.0%
AGGGTTTAGAAGGGGAAGGG+GGG + chr5_1:56213427-56213446 Msa0738440:intron 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG - chr5_1:56213507-56213526 None:intergenic 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG - chr5_1:56213508-56213527 None:intergenic 55.0%
TTGGTTAGAGGGGGAGAGAG+AGG + chr5_1:56213613-56213632 Msa0738440:intron 55.0%
TGGTTAGAGGGGGAGAGAGA+GGG + chr5_1:56213614-56213633 Msa0738440:intron 55.0%
AGGGAACACGTGGAATCGGA+AGG + chr5_1:56213633-56213652 Msa0738440:intron 55.0%
GGGAACACGTGGAATCGGAA+GGG + chr5_1:56213634-56213653 Msa0738440:intron 55.0%
GGGAATGCCAAAGTTCTCCG+AGG + chr5_1:56213728-56213747 Msa0738440:CDS 55.0%
!! CTCCGAGGAGCTTTGTTCTG+GGG + chr5_1:56213743-56213762 Msa0738440:CDS 55.0%
GTGCCTGTACCAAGTACAGC+AGG + chr5_1:56214501-56214520 Msa0738440:CDS 55.0%
GGAGCCAACTGACAACCTTC+TGG + chr5_1:56214598-56214617 Msa0738440:three_prime_UTR 55.0%
GACACTCGCAAACGCGTCGT+TGG + chr5_1:56210190-56210209 Msa0738440:CDS 60.0%
CCGAGTGTAGCTTGGTTGGG+TGG + chr5_1:56210838-56210857 Msa0738440:intron 60.0%
!! GCTTGGTTGGGTGGTGGGTT+TGG + chr5_1:56210847-56210866 Msa0738440:intron 60.0%
GGGGGAGTTAGTGGCCAGAA+AGG - chr5_1:56211917-56211936 None:intergenic 60.0%
GGGTTTAGAAGGGGAAGGGG+GGG + chr5_1:56213428-56213447 Msa0738440:intron 60.0%
TTCGGCTTAGGCTTGGGCAG+AGG + chr5_1:56213707-56213726 Msa0738440:intron 60.0%
TCGGCTTAGGCTTGGGCAGA+GGG + chr5_1:56213708-56213727 Msa0738440:intron 60.0%
GGGGAGAGAGAGGGAACACG+TGG + chr5_1:56213623-56213642 Msa0738440:intron 65.0%
CGGTTGTGAGCGAAGCCGCC+AGG - chr5_1:56214778-56214797 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56209961 56214864 56209961 ID=Msa0738440;Name=Msa0738440
chr5_1 mRNA 56209961 56214864 56209961 ID=Msa0738440-mRNA-1;Parent=Msa0738440;Name=Msa0738440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=121|0.8|0.90|0.90|1|1|11|334|326
chr5_1 exon 56209961 56210268 56209961 ID=Msa0738440-mRNA-1:exon:15924;Parent=Msa0738440-mRNA-1
chr5_1 exon 56210418 56210510 56210418 ID=Msa0738440-mRNA-1:exon:15925;Parent=Msa0738440-mRNA-1
chr5_1 exon 56210620 56210701 56210620 ID=Msa0738440-mRNA-1:exon:15926;Parent=Msa0738440-mRNA-1
chr5_1 exon 56211333 56211429 56211333 ID=Msa0738440-mRNA-1:exon:15927;Parent=Msa0738440-mRNA-1
chr5_1 exon 56211603 56211678 56211603 ID=Msa0738440-mRNA-1:exon:15928;Parent=Msa0738440-mRNA-1
chr5_1 exon 56212895 56212953 56212895 ID=Msa0738440-mRNA-1:exon:15929;Parent=Msa0738440-mRNA-1
chr5_1 exon 56213100 56213222 56213100 ID=Msa0738440-mRNA-1:exon:15930;Parent=Msa0738440-mRNA-1
chr5_1 exon 56213717 56213764 56213717 ID=Msa0738440-mRNA-1:exon:15931;Parent=Msa0738440-mRNA-1
chr5_1 exon 56213898 56213955 56213898 ID=Msa0738440-mRNA-1:exon:15932;Parent=Msa0738440-mRNA-1
chr5_1 exon 56214049 56214134 56214049 ID=Msa0738440-mRNA-1:exon:15933;Parent=Msa0738440-mRNA-1
chr5_1 exon 56214459 56214864 56214459 ID=Msa0738440-mRNA-1:exon:15934;Parent=Msa0738440-mRNA-1
chr5_1 five_prime_UTR 56209961 56210081 56209961 ID=Msa0738440-mRNA-1:five_prime_utr;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56210082 56210268 56210082 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56210418 56210510 56210418 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56210620 56210701 56210620 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56211333 56211429 56211333 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56211603 56211678 56211603 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56212895 56212953 56212895 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56213100 56213222 56213100 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56213717 56213764 56213717 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56213898 56213955 56213898 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56214049 56214134 56214049 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 CDS 56214459 56214530 56214459 ID=Msa0738440-mRNA-1:cds;Parent=Msa0738440-mRNA-1
chr5_1 three_prime_UTR 56214531 56214864 56214531 ID=Msa0738440-mRNA-1:three_prime_utr;Parent=Msa0738440-mRNA-1
Gene Sequence

>Msa0738440

ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCAATTGAAAAAGTTGTAGTTCATCCTTTAGTTTTACTCAGCATAGTTGATAACTACAATAGAGTCGCCAAAGACACTCGCAAACGCGTCGTTGGAGTTCTTCTTGGTTCCTCTTTCAAAGGCACCGTCGATATCACCAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCTAGCATTTGGTTTCTTGATCATAATTATCATGAATCAATGTTCTCTATGTTCAAGAGAATCAATGCTAAGGAGCATGTTGTGGGGTGGTATAGTACTGGACCGAAACTGCGAGAAAATGATCTTGATATTCATGCTTTATTCAATGACTATGTTCCAAATCCCGTTTTGGTTATAATTGATGTTGAACCTAAAGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAGGAGGTTAAAGAGAATGCCACTCAGAAGAGTCAAAAGGTCTTTGTGCATGTCCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACATTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATTTGCAGGCTTGGGCAGAGGGAATGCCAAAGTTCTCCGAGGAGCTTTGTTCTGGGGACGTATTCAACCTGCTGCCCAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGTGAAAACTAATGATCAAATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCAAAATCAGTGCCTGTACCAAGTACAGCAGGAAGTTGA

Protein sequence

>Msa0738440

MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQAWAEGMPKFSEELCSGDVFNLLPNLNVTDLIKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKSVPVPSTAGS*