AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208580 MtrunA17_Chr4g0058091 98.833 514 6 0 1 514 1 514 0.0 1043
Msa1208580 MtrunA17_Chr3g0116561 74.409 508 130 0 7 514 2 509 0.0 785
Msa1208580 MtrunA17_Chr4g0001841 86.296 270 13 1 30 299 20 265 3.72e-161 458
Msa1208580 MtrunA17_Chr4g0001851 84.106 151 8 1 345 495 1 135 7.42e-84 255
Msa1208580 MtrunA17_Chr8g0383711 27.397 292 200 6 226 513 14 297 1.55e-31 123
Msa1208580 MtrunA17_Chr4g0067151 29.804 255 167 6 228 475 76 325 1.23e-29 119
Msa1208580 MtrunA17_Chr4g0067151 26.792 265 175 7 263 513 18 277 3.66e-19 88.6
Msa1208580 MtrunA17_Chr7g0253861 27.206 272 193 2 226 492 51 322 9.16e-28 114
Msa1208580 MtrunA17_Chr7g0253861 27.143 210 138 6 310 513 51 251 4.76e-15 76.6
Msa1208580 MtrunA17_Chr1g0185891 25.962 312 206 8 218 513 281 583 2.85e-24 106
Msa1208580 MtrunA17_Chr1g0185891 33.019 106 65 3 289 392 272 373 4.94e-12 68.6
Msa1208580 MtrunA17_Chr4g0057141 25.962 312 206 8 218 513 342 644 3.08e-24 106
Msa1208580 MtrunA17_Chr4g0057141 33.019 106 65 3 289 392 333 434 6.44e-12 68.2
Msa1208580 MtrunA17_Chr8g0392701 26.948 308 176 9 241 513 27 320 1.88e-22 98.2
Msa1208580 MtrunA17_Chr8g0392701 25.818 275 172 8 225 475 58 324 5.94e-17 82.0
Msa1208580 MtrunA17_Chr8g0392701 27.027 222 140 7 306 513 7 220 1.37e-13 72.0
Msa1208580 MtrunA17_Chr1g0185501 26.073 303 214 6 219 513 12 312 2.98e-22 97.4
Msa1208580 MtrunA17_Chr2g0281451 26.906 223 157 3 245 466 31 248 1.56e-20 95.9
Msa1208580 MtrunA17_Chr2g0281451 26.974 152 109 2 228 378 98 248 2.69e-15 79.3
Msa1208580 MtrunA17_Chr2g0281451 23.684 228 164 4 285 509 29 249 1.42e-14 77.0
Msa1208580 MtrunA17_Chr6g0448921 27.049 244 168 5 224 462 7 245 1.59e-20 95.5
Msa1208580 MtrunA17_Chr6g0448921 24.887 221 156 4 284 501 29 242 3.39e-16 81.6
Msa1208580 MtrunA17_Chr6g0448921 24.103 195 146 2 221 414 50 243 1.05e-12 70.9
Msa1208580 MtrunA17_Chr6g0448921 21.154 208 153 4 310 513 12 212 2.08e-11 66.6
Msa1208580 MtrunA17_Chr4g0059031 26.394 269 175 8 263 514 350 612 1.09e-17 86.7
Msa1208580 MtrunA17_Chr4g0059031 31.351 185 116 5 253 427 41 224 2.15e-16 82.4
Msa1208580 MtrunA17_Chr1g0200901 24.912 285 199 7 225 504 118 392 6.68e-17 82.8
Msa1208580 MtrunA17_Chr1g0200901 24.306 288 155 8 224 498 74 311 4.07e-11 65.1
Msa1208580 MtrunA17_Chr8g0390861 25.322 233 163 4 283 513 880 1103 7.71e-17 84.3
Msa1208580 MtrunA17_Chr8g0390861 26.119 268 163 13 226 471 949 1203 4.98e-13 72.0
Msa1208580 MtrunA17_Chr2g0295791 22.222 261 185 7 224 477 163 412 2.73e-16 81.3
Msa1208580 MtrunA17_Chr8g0352821 22.635 296 181 5 221 514 216 465 1.37e-15 79.7
Msa1208580 MtrunA17_Chr3g0136971 27.815 302 188 11 218 513 337 614 4.00e-15 78.2
Msa1208580 MtrunA17_Chr3g0136971 21.951 205 158 2 226 429 415 618 8.86e-12 67.8
Msa1208580 MtrunA17_Chr1g0176241 27.660 141 101 1 202 342 342 481 1.01e-14 76.6
Msa1208580 MtrunA17_Chr1g0176241 25.630 238 146 7 245 471 264 481 1.21e-11 67.0
Msa1208580 MtrunA17_Chr1g0172501 22.807 285 210 5 232 514 277 553 1.64e-14 76.3
Msa1208580 MtrunA17_Chr4g0053651 23.000 300 172 6 223 512 323 573 1.78e-14 76.3
Msa1208580 MtrunA17_Chr3g0093681 22.807 285 210 5 232 514 277 553 2.13e-14 75.9
Msa1208580 MtrunA17_Chr3g0095501 24.522 314 209 11 215 513 255 555 8.49e-14 73.9
Msa1208580 MtrunA17_Chr5g0401661 23.381 278 195 6 245 512 411 680 4.93e-13 71.6
Msa1208580 MtrunA17_Chr5g0401671 23.022 278 196 7 245 512 321 590 7.37e-13 70.9
Msa1208580 MtrunA17_Chr2g0284241 23.693 287 193 8 245 514 23 300 1.65e-12 68.6
Msa1208580 MtrunA17_Chr1g0162961 23.113 212 141 3 240 429 86 297 1.84e-12 69.3
Msa1208580 MtrunA17_Chr4g0070791 24.812 266 169 8 245 489 33 288 5.35e-12 67.0
Msa1208580 MtrunA17_Chr3g0099061 22.422 223 144 7 280 482 222 435 5.81e-12 68.2
Msa1208580 MtrunA17_Chr3g0099061 27.108 166 107 4 328 483 227 388 8.11e-12 67.4
Msa1208580 MtrunA17_Chr7g0246741 25.243 206 146 4 281 483 378 578 8.42e-12 68.2
Msa1208580 MtrunA17_Chr6g0449701 23.741 278 172 11 274 513 110 385 9.01e-12 67.4
Msa1208580 MtrunA17_Chr2g0294611 24.188 277 161 9 225 471 239 496 1.22e-11 67.8
Msa1208580 MtrunA17_Chr2g0292301 23.377 231 162 5 245 473 225 442 1.26e-11 67.0
Msa1208580 MtrunA17_Chr4g0035611 26.394 269 166 12 225 485 46 290 1.98e-11 67.0
Msa1208580 MtrunA17_Chr1g0168391 25.000 204 147 4 232 431 226 427 3.63e-11 65.5
Msa1208580 MtrunA17_Chr1g0183051 24.127 315 207 14 217 513 203 503 5.29e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208580 AT5G50230.1 71.203 507 146 0 8 514 3 509 0.0 784
Msa1208580 AT5G64730.1 26.490 302 216 4 213 513 1 297 5.03e-30 119
Msa1208580 AT3G49660.1 28.682 258 168 5 226 475 67 316 1.37e-29 119
Msa1208580 AT3G49660.1 25.581 301 205 6 226 514 20 313 1.34e-27 113
Msa1208580 AT2G43770.1 26.838 272 194 2 226 492 49 320 1.81e-28 116
Msa1208580 AT2G43770.1 26.923 208 141 5 310 513 49 249 4.35e-15 77.0
Msa1208580 AT1G48630.1 26.403 303 185 8 241 513 27 321 2.33e-22 98.6
Msa1208580 AT1G48630.1 26.087 276 171 8 225 475 58 325 1.35e-17 84.3
Msa1208580 AT1G48630.1 25.455 220 146 7 306 513 7 220 1.31e-12 69.3
Msa1208580 AT3G18130.1 26.733 303 184 8 241 513 27 321 3.16e-22 98.2
Msa1208580 AT3G18130.1 26.087 276 171 8 225 475 58 325 1.73e-17 84.0
Msa1208580 AT3G18130.1 25.000 220 147 7 306 513 7 220 1.17e-11 66.6
Msa1208580 AT1G10580.1 24.038 312 212 8 218 513 270 572 3.48e-21 97.4
Msa1208580 AT3G16650.1 25.191 262 175 8 224 477 163 411 7.68e-21 95.9
Msa1208580 AT5G23430.3 28.111 217 150 4 224 435 7 222 1.11e-20 96.3
Msa1208580 AT5G23430.3 25.229 218 153 4 285 499 30 240 1.69e-15 80.1
Msa1208580 AT5G23430.3 24.103 195 146 2 221 414 50 243 9.90e-12 68.2
Msa1208580 AT5G23430.2 28.111 217 150 4 224 435 7 222 1.11e-20 96.3
Msa1208580 AT5G23430.2 25.229 218 153 4 285 499 30 240 1.69e-15 80.1
Msa1208580 AT5G23430.2 24.103 195 146 2 221 414 50 243 9.90e-12 68.2
Msa1208580 AT5G23430.1 28.111 217 150 4 224 435 7 222 1.16e-20 96.3
Msa1208580 AT5G23430.1 25.229 218 153 4 285 499 30 240 1.78e-15 80.1
Msa1208580 AT5G23430.1 24.103 195 146 2 221 414 50 243 9.82e-12 68.2
Msa1208580 AT1G11160.2 27.165 254 174 6 224 471 6 254 1.21e-20 96.7
Msa1208580 AT1G11160.2 23.348 227 168 3 284 509 28 249 6.66e-13 72.0
Msa1208580 AT1G11160.1 27.165 254 174 6 224 471 6 254 1.40e-20 96.3
Msa1208580 AT1G11160.1 23.348 227 168 3 284 509 28 249 7.21e-13 72.0
Msa1208580 AT1G11160.4 27.165 254 174 6 224 471 6 254 1.53e-20 96.3
Msa1208580 AT1G11160.4 23.348 227 168 3 284 509 28 249 8.66e-13 71.6
Msa1208580 AT1G18080.1 25.484 310 180 9 241 513 27 322 1.62e-20 93.2
Msa1208580 AT1G18080.1 28.440 218 143 6 306 513 7 221 5.34e-15 76.6
Msa1208580 AT1G18080.1 23.827 277 177 8 225 475 58 326 2.50e-14 74.7
Msa1208580 AT5G08390.1 28.571 217 149 4 224 435 7 222 2.77e-20 95.1
Msa1208580 AT5G08390.1 24.074 216 158 3 285 499 30 240 6.35e-15 78.2
Msa1208580 AT5G08390.1 22.564 195 149 2 221 414 50 243 4.69e-11 65.9
Msa1208580 AT5G08390.1 25.974 154 104 3 226 374 97 245 6.63e-11 65.5
Msa1208580 AT4G02730.1 25.704 284 202 6 214 490 23 304 2.98e-19 89.4
Msa1208580 AT4G02730.1 21.654 254 186 7 267 513 38 285 1.62e-13 72.0
Msa1208580 AT4G02730.1 25.907 193 135 4 219 405 117 307 8.77e-11 63.9
Msa1208580 AT4G15900.1 23.970 267 173 9 224 477 169 418 3.37e-19 90.9
Msa1208580 AT1G04510.2 26.509 381 234 13 58 431 87 428 1.46e-18 89.0
Msa1208580 AT1G04510.1 26.509 381 234 13 58 431 87 428 1.63e-18 89.0
Msa1208580 AT5G13480.2 23.469 294 179 4 221 513 167 415 5.20e-18 87.8
Msa1208580 AT1G61210.3 26.378 254 176 6 224 472 6 253 6.03e-18 88.2
Msa1208580 AT1G61210.3 24.324 222 156 5 284 501 28 241 1.48e-12 70.9
Msa1208580 AT5G13480.3 23.469 294 179 4 221 513 144 392 7.43e-18 87.4
Msa1208580 AT5G13480.4 23.469 294 179 4 221 513 144 392 8.10e-18 87.0
Msa1208580 AT1G61210.2 26.872 227 160 4 224 445 6 231 9.05e-18 87.4
Msa1208580 AT1G61210.2 24.324 222 156 5 284 501 28 241 2.61e-12 70.1
Msa1208580 AT1G61210.2 25.157 159 116 3 226 383 96 252 1.04e-11 68.2
Msa1208580 AT5G13480.1 23.469 294 179 4 221 513 156 404 9.60e-18 87.0
Msa1208580 AT1G61210.1 26.872 227 160 4 224 445 6 231 1.15e-17 87.0
Msa1208580 AT1G61210.1 24.324 222 156 5 284 501 28 241 2.78e-12 70.1
Msa1208580 AT1G61210.1 25.157 159 116 3 226 383 96 252 1.17e-11 68.2
Msa1208580 AT5G52820.1 22.849 337 214 11 219 513 97 429 1.78e-17 85.5
Msa1208580 AT5G52820.1 26.816 179 111 3 164 342 313 471 1.78e-14 76.3
Msa1208580 AT2G33340.2 23.758 463 294 16 58 507 87 503 2.16e-16 82.4
Msa1208580 AT2G33340.1 23.758 463 294 16 58 507 87 503 2.16e-16 82.4
Msa1208580 AT2G33340.3 23.624 436 278 14 58 484 87 476 4.16e-16 81.3
Msa1208580 AT5G16750.1 26.038 265 177 6 264 513 350 610 4.51e-16 82.0
Msa1208580 AT5G16750.1 26.512 215 149 5 254 461 42 254 4.54e-15 79.0
Msa1208580 AT5G16750.1 23.443 273 175 8 221 471 392 652 2.47e-11 67.0
Msa1208580 AT3G27640.1 24.911 281 169 8 274 513 130 409 1.20e-15 80.1
Msa1208580 AT3G27640.2 24.911 281 169 8 274 513 111 390 1.33e-15 79.7
Msa1208580 AT5G43920.1 25.806 310 208 11 218 513 212 513 1.92e-15 79.3
Msa1208580 AT1G49040.1 26.937 271 171 12 241 498 866 1122 2.90e-15 79.7
Msa1208580 AT1G49040.1 23.616 271 179 8 254 513 836 1089 5.65e-14 75.5
Msa1208580 AT1G49040.1 24.862 181 125 6 233 409 944 1117 1.36e-12 71.2
Msa1208580 AT1G11160.3 26.087 207 146 4 267 471 11 212 2.93e-15 79.3
Msa1208580 AT1G11160.3 28.387 155 107 3 226 378 54 206 3.71e-14 75.9
Msa1208580 AT1G11160.3 25.123 203 146 3 308 509 10 207 1.83e-12 70.5
Msa1208580 AT3G18140.1 24.373 279 197 7 245 514 8 281 1.01e-14 75.5
Msa1208580 AT3G18140.1 25.000 184 122 5 235 406 124 303 7.67e-11 63.9
Msa1208580 AT5G67320.1 23.264 288 162 5 226 503 361 599 1.09e-14 77.4
Msa1208580 AT4G03020.1 26.104 249 164 6 275 513 232 470 1.56e-14 76.6
Msa1208580 AT4G03020.2 26.104 249 164 6 275 513 232 470 1.56e-14 76.6
Msa1208580 AT4G03020.3 26.104 249 164 6 275 513 232 470 1.56e-14 76.6
Msa1208580 AT3G49180.1 24.645 211 142 3 243 436 91 301 7.58e-14 73.9
Msa1208580 AT5G08560.1 23.944 284 164 10 278 513 280 559 9.87e-14 74.3
Msa1208580 AT5G08560.2 23.944 284 164 10 278 513 280 559 9.87e-14 74.3
Msa1208580 AT5G08560.3 23.944 284 164 10 278 513 280 559 9.87e-14 74.3
Msa1208580 AT5G25150.1 26.367 311 177 11 218 513 340 613 1.45e-13 73.9
Msa1208580 AT5G25150.1 22.439 205 157 2 226 429 414 617 5.82e-11 65.5
Msa1208580 AT5G25150.2 26.367 311 177 11 218 513 340 613 1.70e-13 73.6
Msa1208580 AT5G25150.2 22.439 205 157 2 226 429 414 617 6.90e-11 65.5
Msa1208580 AT2G47410.4 28.249 177 109 3 225 383 49 225 1.87e-13 73.9
Msa1208580 AT2G47410.1 28.249 177 109 3 225 383 231 407 2.28e-13 73.6
Msa1208580 AT2G47410.2 28.249 177 109 3 225 383 230 406 2.30e-13 73.6
Msa1208580 AT2G21390.1 24.000 275 172 7 225 468 46 314 8.62e-13 71.6
Msa1208580 AT2G47410.6 26.768 198 127 3 225 420 49 230 1.10e-12 71.6
Msa1208580 AT2G47410.3 26.768 198 127 3 225 420 49 230 1.10e-12 71.6
Msa1208580 AT2G16405.1 23.308 266 182 7 268 513 212 475 1.20e-12 70.5
Msa1208580 AT2G41500.1 23.140 242 174 6 277 514 303 536 1.25e-12 70.5
Msa1208580 AT2G41500.1 23.320 253 182 6 226 474 294 538 1.65e-12 70.1
Msa1208580 AT2G41500.2 23.140 242 174 6 277 514 303 536 1.25e-12 70.5
Msa1208580 AT2G41500.2 23.320 253 182 6 226 474 294 538 1.65e-12 70.1
Msa1208580 AT2G47410.5 26.768 198 127 3 225 420 231 412 1.30e-12 71.2
Msa1208580 AT4G29830.1 23.810 294 195 7 227 498 11 297 1.38e-12 69.3
Msa1208580 AT2G22040.1 23.693 287 191 9 245 514 13 288 1.89e-12 68.6
Msa1208580 AT2G22040.1 25.134 187 125 4 235 409 130 313 1.98e-12 68.6
Msa1208580 AT1G71840.1 23.841 302 208 10 224 513 64 355 2.53e-12 69.3
Msa1208580 AT3G15610.1 23.810 273 195 7 245 513 34 297 3.40e-12 68.2
Msa1208580 AT1G73720.1 24.848 165 111 3 328 483 226 386 7.51e-12 68.2
Msa1208580 AT1G73720.1 22.791 215 152 6 280 482 221 433 1.52e-11 67.0
Msa1208580 AT5G49430.2 26.570 207 128 4 225 429 240 424 3.76e-11 66.6
Msa1208580 AT5G49430.1 26.570 207 128 4 225 429 240 424 3.76e-11 66.6
Msa1208580 AT1G62020.1 22.909 275 175 7 225 468 46 314 5.22e-11 65.9
Msa1208580 AT2G26490.1 26.820 261 157 13 244 491 146 385 6.45e-11 65.1
Msa1208580 AT5G14530.1 22.727 308 206 10 200 495 8 295 8.14e-11 63.9
Msa1208580 AT1G52730.1 22.993 274 196 8 245 513 34 297 8.45e-11 63.9
Msa1208580 AT1G52730.2 22.993 274 196 8 245 513 34 297 8.45e-11 63.9

Find 132 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTAACTTGATTGAATT+AGG 0.175844 8_1:+66767175 None:intergenic
TTAACAGAGTGGCTTCTAAT+TGG 0.280252 8_1:-66764176 Msa1208580:CDS
TTGTACGTGGGACCTATTTC+CGG 0.282993 8_1:-66767244 Msa1208580:five_prime_UTR
TCCTTAAGTTCAAGTCTTAC+TGG 0.289367 8_1:-66764708 Msa1208580:CDS
ACCATTGTTGTTGTTGTGTT+TGG 0.308418 8_1:+66767141 None:intergenic
GATTGTATTATACCTCATTT+AGG 0.316444 8_1:+66765817 None:intergenic
ACGACCGTACTATAAAAGTT+TGG 0.316749 8_1:-66764491 Msa1208580:CDS
TCACTAACTTGATTGAATTA+GGG 0.332695 8_1:+66767176 None:intergenic
CGAGTCCGTCATACCCTTAC+TGG 0.338442 8_1:-66764582 Msa1208580:CDS
CTCTCAATTAAAGACAGATT+TGG 0.339284 8_1:-66765994 Msa1208580:CDS
TCAATCGCAACTTGTTCTTT+CGG 0.343457 8_1:+66767105 None:intergenic
TTGTTTCAATCTGGTCATAA+TGG 0.359886 8_1:-66763969 Msa1208580:exon
CTTCTGTTCTCTGTTGTAGC+TGG 0.366870 8_1:-66764035 Msa1208580:CDS
GCAAAGAGCATTGCAGTTGC+TGG 0.371762 8_1:+66764428 None:intergenic
TCAATATCCCTTTCTCGAAA+TGG 0.373411 8_1:-66764288 Msa1208580:CDS
TCGATGGTAATCTTCGGTTA+TGG 0.380769 8_1:-66764368 Msa1208580:CDS
TTCAGAACTAAAAGCACAAC+TGG 0.383721 8_1:-66765931 Msa1208580:CDS
ATCGACATGTCCAGAAAATA+TGG 0.387589 8_1:+66764386 None:intergenic
CGACCGTACTATAAAAGTTT+GGG 0.390463 8_1:-66764490 Msa1208580:CDS
TGGCTGCCTTGGCTCAGTAT+TGG 0.392787 8_1:-66764688 Msa1208580:CDS
GGTATGGGATTGTTTCTATC+TGG 0.393142 8_1:-66763902 Msa1208580:three_prime_UTR
AATTCTAGTAGATTGATTAC+TGG 0.396540 8_1:-66764774 Msa1208580:CDS
GAAAGAGAAAGCAGAGAACT+TGG 0.396574 8_1:-66766474 Msa1208580:CDS
TCAAGTCTTACTGGCTGCCT+TGG 0.397402 8_1:-66764699 Msa1208580:CDS
TTCTAGACCCATCGTTTCTC+AGG 0.404660 8_1:-66767001 Msa1208580:intron
AGAATTGTACTCGAACAATA+AGG 0.407571 8_1:+66764791 None:intergenic
ACAACAACAATGGTGAATAC+TGG 0.408316 8_1:-66767132 Msa1208580:exon
CAATATTTCCATTTCGAGAA+AGG 0.408563 8_1:+66764280 None:intergenic
CTGATGGATCTGTGCATATA+TGG 0.411583 8_1:-66764104 Msa1208580:CDS
GGAATGGAATTGTTTCAATC+TGG 0.416661 8_1:-66763978 Msa1208580:CDS
CGATGGTAATCTTCGGTTAT+GGG 0.416788 8_1:-66764367 Msa1208580:CDS
TTAAGAAAATCTAACAGGTA+TGG 0.435974 8_1:-66763918 Msa1208580:three_prime_UTR
CTTTATCTGTGTGTCCAGTA+AGG 0.436242 8_1:+66764568 None:intergenic
AAGACATGGTTCAGCGGCTA+AGG 0.439770 8_1:-66764956 Msa1208580:CDS
ATTCCTGTCAGCTGAAGCTA+GGG 0.443091 8_1:+66763996 None:intergenic
AATATTTCCATTTCGAGAAA+GGG 0.445723 8_1:+66764281 None:intergenic
CAGTCTTACTTAATATCTAA+AGG 0.445934 8_1:-66763724 Msa1208580:three_prime_UTR
TAAGAAAATCTAACAGGTAT+GGG 0.449668 8_1:-66763917 Msa1208580:three_prime_UTR
TTTGTTTGATGTGCGATCTC+TGG 0.451133 8_1:-66764226 Msa1208580:CDS
GCCAGTAAGACTTGAACTTA+AGG 0.454568 8_1:+66764707 None:intergenic
TTAGTTTGGCCGCTGTTCCT+AGG 0.455437 8_1:+66763602 None:intergenic
TCCCTTCCAATTGCAAATAC+AGG 0.460830 8_1:-66764842 Msa1208580:CDS
AGACTAGAGAGACCGGAAAT+AGG 0.462990 8_1:+66767232 None:intergenic
TATCTAACCATGCCATTGGC+AGG 0.464224 8_1:-66763635 Msa1208580:three_prime_UTR
AGTCTTACTTAATATCTAAA+GGG 0.465889 8_1:-66763723 Msa1208580:three_prime_UTR
CATTCCTGTCAGCTGAAGCT+AGG 0.467857 8_1:+66763995 None:intergenic
AATAACAGATCGATTATCAT+TGG 0.473031 8_1:+66764653 None:intergenic
GCTCTTTGCTTCAGCACAGA+TGG 0.474209 8_1:-66764414 Msa1208580:CDS
CTAGAAAGTGCGAGAAAAGC+AGG 0.474966 8_1:+66767018 None:intergenic
CTTTAGATATTAAGTAAGAC+TGG 0.475563 8_1:+66763725 None:intergenic
GACAACAATCATGTTGCCGC+TGG 0.477287 8_1:-66764132 Msa1208580:CDS
ATTTAGCCTGTATTTGCAAT+TGG 0.481713 8_1:+66764836 None:intergenic
AAGTTGTTCCTTGTTTAGAC+AGG 0.483019 8_1:-66763811 Msa1208580:three_prime_UTR
GAAAGCAGAGAACTTGGAAG+TGG 0.488324 8_1:-66766468 Msa1208580:CDS
AACCCCTAGCTTCAGCTGAC+AGG 0.489230 8_1:-66763999 Msa1208580:CDS
ATTCTAGTAGATTGATTACT+GGG 0.491572 8_1:-66764773 Msa1208580:CDS
GCGGCAACATGATTGTTGTC+TGG 0.492362 8_1:+66764135 None:intergenic
TGTTGTAGCTGGAGTGGAAT+GGG 0.499332 8_1:-66764024 Msa1208580:CDS
AGCCTGTATTTGCAATTGGA+AGG 0.502314 8_1:+66764840 None:intergenic
AAACGCCATCTTCTCGAAGA+AGG 0.507490 8_1:-66767051 Msa1208580:CDS
GCCTGTATTTGCAATTGGAA+GGG 0.520159 8_1:+66764841 None:intergenic
CATATATGGTCAATATCTAA+AGG 0.520412 8_1:-66764090 Msa1208580:CDS
GAGCGCCTTCTTCGAGAAGA+TGG 0.521377 8_1:+66767046 None:intergenic
GACATGTCGATGGTAATCTT+CGG 0.525301 8_1:-66764374 Msa1208580:CDS
AAAGTTTGGGACTTGATGAA+AGG 0.527945 8_1:-66764477 Msa1208580:CDS
TACTTCCACAACAAGTTGCT+CGG 0.529307 8_1:+66766409 None:intergenic
CAAAGAGCATTGCAGTTGCT+GGG 0.531625 8_1:+66764429 None:intergenic
AATTTATCTAACCATGCCAT+TGG 0.532907 8_1:-66763639 Msa1208580:three_prime_UTR
GTTGCCGCTGGGTCTACTGA+TGG 0.534764 8_1:-66764120 Msa1208580:CDS
GTGCAAATTATCCCTTCCAC+TGG 0.536187 8_1:+66764251 None:intergenic
GTTCTCTGTTGTAGCTGGAG+TGG 0.537003 8_1:-66764030 Msa1208580:CDS
AAAGTGTGGGATACAAATAC+AGG 0.539323 8_1:-66764732 Msa1208580:CDS
ATTGTTCGTCGAAGTGAAGA+AGG 0.542555 8_1:-66764891 Msa1208580:CDS
TATGTGTGGGATCTTAGCTC+AGG 0.543218 8_1:-66764606 Msa1208580:CDS
CTAGCTTCAGCTGACAGGAA+TGG 0.547140 8_1:-66763994 Msa1208580:CDS
AGAAGGAGTTGACAGAATTG+AGG 0.554456 8_1:-66766325 Msa1208580:intron
TTTCTATCTGGTCATAGTGA+CGG 0.558867 8_1:-66763890 Msa1208580:three_prime_UTR
GTGCGATCTCTGGAAGTTTG+TGG 0.559305 8_1:-66764216 Msa1208580:CDS
TGCAATTTCTGATATGCAGA+AGG 0.560064 8_1:-66766342 Msa1208580:CDS
CTTGATGTTAGAAAAGATGA+AGG 0.562481 8_1:-66765850 Msa1208580:CDS
TGAAATAATCAGTACTCTGA+AGG 0.562507 8_1:-66764067 Msa1208580:CDS
GTTATCCGAGCAACTTGTTG+TGG 0.566280 8_1:-66766414 Msa1208580:CDS
CTCAAACAACTTGTATGTGT+GGG 0.569983 8_1:-66764619 Msa1208580:CDS
CAGGTGGAGACTAGAGAGAC+CGG 0.577073 8_1:+66767225 None:intergenic
GCTCAAACAACTTGTATGTG+TGG 0.578898 8_1:-66764620 Msa1208580:CDS
CTGTTGTAGCTGGAGTGGAA+TGG 0.580319 8_1:-66764025 Msa1208580:CDS
TTTATCTGTGTGTCCAGTAA+GGG 0.581132 8_1:+66764569 None:intergenic
ATTACCACCTGCCAATGGCA+TGG 0.581760 8_1:+66763628 None:intergenic
AGACATGGTTCAGCGGCTAA+GGG 0.586487 8_1:-66764955 Msa1208580:CDS
ACAACTTGCAAGGGAACAAG+TGG 0.587447 8_1:-66764919 Msa1208580:CDS
GTTCAGCGGCTAAGGGCTAG+TGG 0.589500 8_1:-66764948 Msa1208580:CDS
ATATTGCATTGACCAGTGGA+AGG 0.590280 8_1:-66764263 Msa1208580:CDS
GGATGCTGAACGCCTAAATG+AGG 0.592570 8_1:-66765829 Msa1208580:intron
AATGCTATAAAGCTCAATCT+CGG 0.592904 8_1:-66766436 Msa1208580:CDS
TACAGGCTAAATGCACATGA+AGG 0.593778 8_1:-66764825 Msa1208580:CDS
ACAACAATCATGTTGCCGCT+GGG 0.594947 8_1:-66764131 Msa1208580:CDS
GTGGTCTAGAACAACTTGCA+AGG 0.596866 8_1:-66764929 Msa1208580:CDS
TATGGGACATTCAGAGTGGA+AGG 0.603476 8_1:-66764350 Msa1208580:CDS
TTGTGCGGTTGATGTTAGCA+AGG 0.604078 8_1:-66764544 Msa1208580:CDS
ATGATCTACTTATTTGTACG+TGG 0.604095 8_1:-66767257 Msa1208580:five_prime_UTR
GGTTAATTACCACCTGCCAA+TGG 0.605064 8_1:+66763623 None:intergenic
AGGATCGTTCAGTTAAAGTG+TGG 0.609417 8_1:-66764746 Msa1208580:CDS
GGATCGTTCAGTTAAAGTGT+GGG 0.613938 8_1:-66764745 Msa1208580:CDS
GGAAATATTGCATTGACCAG+TGG 0.615284 8_1:-66764267 Msa1208580:CDS
CTTGCAAGGGAACAAGTGGA+TGG 0.615284 8_1:-66764915 Msa1208580:CDS
TGGTCTAGAACAACTTGCAA+GGG 0.618737 8_1:-66764928 Msa1208580:CDS
TGATCTACTTATTTGTACGT+GGG 0.620905 8_1:-66767256 Msa1208580:five_prime_UTR
TTCCTGTCAGCTGAAGCTAG+GGG 0.627368 8_1:+66763997 None:intergenic
TATTGCATTGACCAGTGGAA+GGG 0.632302 8_1:-66764262 Msa1208580:CDS
ACCAAACACAACAACAACAA+TGG 0.632413 8_1:-66767142 Msa1208580:exon
TCTAGTAGATTGATTACTGG+GGG 0.632682 8_1:-66764771 Msa1208580:CDS
TGTGTCCAGTAAGGGTATGA+CGG 0.636119 8_1:+66764577 None:intergenic
GGTACGTACCTGAGAAACGA+TGG 0.636424 8_1:+66766993 None:intergenic
TGGCAGGTGGTAATTAACCT+AGG 0.643923 8_1:-66763619 Msa1208580:three_prime_UTR
GAGTGGAAGGCTGCTAAGTG+AGG 0.644822 8_1:-66764337 Msa1208580:CDS
TGAGATCCAATACTGAGCCA+AGG 0.644864 8_1:+66764682 None:intergenic
AGAAAGGGATATTGACGTGA+CGG 0.645528 8_1:+66764296 None:intergenic
AATGGTGTCCTGTCTAAACA+AGG 0.646342 8_1:+66763803 None:intergenic
ATCTGGTCATAGTGACGGTG+TGG 0.646777 8_1:-66763885 Msa1208580:three_prime_UTR
AGGCTAAATGCACATGAAGG+AGG 0.648402 8_1:-66764822 Msa1208580:CDS
TATATGAAGACATGGTTCAG+CGG 0.657419 8_1:-66764962 Msa1208580:CDS
GTACGTACCTGAGAAACGAT+GGG 0.661026 8_1:+66766994 None:intergenic
AAATGCGCTATATGAAGACA+TGG 0.661275 8_1:-66764970 Msa1208580:CDS
ACACACAGATAAAGTTTGTG+CGG 0.667943 8_1:-66764559 Msa1208580:CDS
TTCTAGTAGATTGATTACTG+GGG 0.672008 8_1:-66764772 Msa1208580:CDS
CGGTTATGGGACATTCAGAG+TGG 0.682375 8_1:-66764354 Msa1208580:CDS
GGTAATTAACCTAGGAACAG+CGG 0.683386 8_1:-66763611 Msa1208580:three_prime_UTR
CTAACCATGCCATTGGCAGG+TGG 0.683421 8_1:-66763632 Msa1208580:three_prime_UTR
AGAAGCCACTCTGTTAACTG+TGG 0.703135 8_1:+66764182 None:intergenic
ATCTGGTCATAATGGCTGTG+TGG 0.714659 8_1:-66763961 Msa1208580:exon
ACGAGCCACAGTTAACAGAG+TGG 0.730751 8_1:-66764187 Msa1208580:CDS
AGATCCATCAGTAGACCCAG+CGG 0.753123 8_1:+66764116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACAATTTTCATTTTTTTT+AGG - chr8_1:66763910-66763929 Msa1208580:three_prime_UTR 10.0%
!!! AACAATTTTCATTTTTTTTA+GGG - chr8_1:66763911-66763930 Msa1208580:three_prime_UTR 10.0%
!! AATGAAAATTGTTAATGAAA+GGG + chr8_1:66763904-66763923 None:intergenic 15.0%
!! AAATGAAAATTGTTAATGAA+AGG + chr8_1:66763905-66763924 None:intergenic 15.0%
!! AAAGGAAACAATAAAAAAAA+TGG + chr8_1:66763971-66763990 None:intergenic 15.0%
!! TAAGTAAAAAAACTCATTTA+TGG + chr8_1:66764829-66764848 None:intergenic 15.0%
!! AAAAACTCTTATAAGTTTAT+AGG + chr8_1:66765365-66765384 None:intergenic 15.0%
!! AAATGTATTATTAGTTGAAT+CGG + chr8_1:66765868-66765887 None:intergenic 15.0%
!!! CTATTTTACAGTTTTTAAAT+TGG - chr8_1:66767021-66767040 Msa1208580:CDS 15.0%
!!! TTTTATTGTTTCCTTTATTG+TGG - chr8_1:66763975-66763994 Msa1208580:CDS 20.0%
!! TTTATTGTTTCCTTTATTGT+GGG - chr8_1:66763976-66763995 Msa1208580:CDS 20.0%
!!! AATTTACCTATTTTTAACTG+TGG - chr8_1:66764219-66764238 Msa1208580:CDS 20.0%
!! ATAAAAAAGTTCGATTAAAC+GGG + chr8_1:66765199-66765218 None:intergenic 20.0%
!! GATAAAAAAGTTCGATTAAA+CGG + chr8_1:66765200-66765219 None:intergenic 20.0%
!! CATCATTCAAAAAAATTCAA+TGG + chr8_1:66767091-66767110 None:intergenic 20.0%
!! AGTCTTACTTAATATCTAAA+GGG - chr8_1:66767150-66767169 Msa1208580:five_prime_UTR 20.0%
! TCACTAACTTGATTGAATTA+GGG + chr8_1:66763700-66763719 None:intergenic 25.0%
! ATCACTAACTTGATTGAATT+AGG + chr8_1:66763701-66763720 None:intergenic 25.0%
! ATGACTGAACTAATTTCTTA+CGG + chr8_1:66764003-66764022 None:intergenic 25.0%
! TAATTCAATGTGATCACATA+TGG + chr8_1:66764134-66764153 None:intergenic 25.0%
! AACTTTCCACAGTTAAAAAT+AGG + chr8_1:66764228-66764247 None:intergenic 25.0%
!!! TTTTAACTGTGGAAAGTTAT+TGG - chr8_1:66764230-66764249 Msa1208580:CDS 25.0%
! TGATGTATTTATGTTGTTGA+AGG - chr8_1:66764366-66764385 Msa1208580:CDS 25.0%
! GATGTATTTATGTTGTTGAA+GGG - chr8_1:66764367-66764386 Msa1208580:CDS 25.0%
! AAATTAATGTTGCAAAATGC+AGG - chr8_1:66764848-66764867 Msa1208580:CDS 25.0%
! AATTAATGTTGCAAAATGCA+GGG - chr8_1:66764849-66764868 Msa1208580:CDS 25.0%
! GATTGTATTATACCTCATTT+AGG + chr8_1:66765059-66765078 None:intergenic 25.0%
! AAGTTGAAATGAATTTGCAA+TGG - chr8_1:66765238-66765257 Msa1208580:intron 25.0%
! AACTCATAGTGCATAATATT+TGG - chr8_1:66765581-66765600 Msa1208580:intron 25.0%
!!! TGAAAAGAAAAAGTACTAAC+TGG + chr8_1:66765700-66765719 None:intergenic 25.0%
! AATTCTAGTAGATTGATTAC+TGG - chr8_1:66766099-66766118 Msa1208580:intron 25.0%
! ATTCTAGTAGATTGATTACT+GGG - chr8_1:66766100-66766119 Msa1208580:intron 25.0%
! AATAACAGATCGATTATCAT+TGG + chr8_1:66766223-66766242 None:intergenic 25.0%
! AATATTTCCATTTCGAGAAA+GGG + chr8_1:66766595-66766614 None:intergenic 25.0%
! CATATATGGTCAATATCTAA+AGG - chr8_1:66766783-66766802 Msa1208580:intron 25.0%
!!! CAGTTTTAAGAAAATCTAAC+AGG - chr8_1:66766950-66766969 Msa1208580:intron 25.0%
! TTAAGAAAATCTAACAGGTA+TGG - chr8_1:66766955-66766974 Msa1208580:intron 25.0%
! TAAGAAAATCTAACAGGTAT+GGG - chr8_1:66766956-66766975 Msa1208580:intron 25.0%
!! TTTACAGTTTTTAAATTGGC+TGG - chr8_1:66767025-66767044 Msa1208580:CDS 25.0%
! CTTTAGATATTAAGTAAGAC+TGG + chr8_1:66767151-66767170 None:intergenic 25.0%
! CAGTCTTACTTAATATCTAA+AGG - chr8_1:66767149-66767168 Msa1208580:five_prime_UTR 25.0%
ATGATCTACTTATTTGTACG+TGG - chr8_1:66763616-66763635 Msa1208580:three_prime_UTR 30.0%
TGATCTACTTATTTGTACGT+GGG - chr8_1:66763617-66763636 Msa1208580:three_prime_UTR 30.0%
!! TTCTGATTCGAATGATTTTC+AGG + chr8_1:66763670-66763689 None:intergenic 30.0%
! ACTACTAAGCACTATTCTTT+TGG + chr8_1:66764031-66764050 None:intergenic 30.0%
AATGCTATAAAGCTCAATCT+CGG - chr8_1:66764437-66764456 Msa1208580:CDS 30.0%
! TGCATTTTCTTTCTCTTGAA+GGG + chr8_1:66764515-66764534 None:intergenic 30.0%
! TTGCATTTTCTTTCTCTTGA+AGG + chr8_1:66764516-66764535 None:intergenic 30.0%
! TAGCTGCTATTTAACAACAT+TGG + chr8_1:66764601-66764620 None:intergenic 30.0%
CAAATTCTGCTATGGTATAA+CGG + chr8_1:66764629-66764648 None:intergenic 30.0%
AGTGTATCTTGAAACTATAG+CGG + chr8_1:66764658-66764677 None:intergenic 30.0%
TACAAAATGTTGTCCAATAG+CGG - chr8_1:66764684-66764703 Msa1208580:CDS 30.0%
ACTAAAAAAAATGTTGGTCG+CGG + chr8_1:66764803-66764822 None:intergenic 30.0%
TGGCAGACTAAAAAAAATGT+TGG + chr8_1:66764809-66764828 None:intergenic 30.0%
CTCTCAATTAAAGACAGATT+TGG - chr8_1:66764879-66764898 Msa1208580:CDS 30.0%
! TCATCTTTTCTAACATCAAG+CGG + chr8_1:66765023-66765042 None:intergenic 30.0%
CTTGATGTTAGAAAAGATGA+AGG - chr8_1:66765023-66765042 Msa1208580:intron 30.0%
TAGTTCCAAAAGTTGTATAC+TGG + chr8_1:66765094-66765113 None:intergenic 30.0%
!!! ACTTTTTTATCAGCACTTGA+AGG - chr8_1:66765209-66765228 Msa1208580:intron 30.0%
TCAAACAACTATCTTTGACA+AGG + chr8_1:66765271-66765290 None:intergenic 30.0%
AAAGATAGTTGTTTGACTGT+AGG - chr8_1:66765275-66765294 Msa1208580:intron 30.0%
!!! TGTACCTCAATTTTTTCAGA+AGG - chr8_1:66765312-66765331 Msa1208580:intron 30.0%
! AGAACCTTCTGAAAAAATTG+AGG + chr8_1:66765319-66765338 None:intergenic 30.0%
AAGTACATCAAATCCAATGT+TGG + chr8_1:66765503-66765522 None:intergenic 30.0%
AATACATTTCCCATCTCTTT+AGG - chr8_1:66765879-66765898 Msa1208580:CDS 30.0%
ATTTAGCCTGTATTTGCAAT+TGG + chr8_1:66766040-66766059 None:intergenic 30.0%
AGAATTGTACTCGAACAATA+AGG + chr8_1:66766085-66766104 None:intergenic 30.0%
TTCTAGTAGATTGATTACTG+GGG - chr8_1:66766101-66766120 Msa1208580:intron 30.0%
! AGTCCCAAACTTTTATAGTA+CGG + chr8_1:66766389-66766408 None:intergenic 30.0%
CAATATTTCCATTTCGAGAA+AGG + chr8_1:66766596-66766615 None:intergenic 30.0%
TGAAATAATCAGTACTCTGA+AGG - chr8_1:66766806-66766825 Msa1208580:intron 30.0%
TTGTTTCAATCTGGTCATAA+TGG - chr8_1:66766904-66766923 Msa1208580:intron 30.0%
AATTTATCTAACCATGCCAT+TGG - chr8_1:66767234-66767253 Msa1208580:five_prime_UTR 30.0%
!! TGATTCGAATGATTTTCAGG+TGG + chr8_1:66763667-66763686 None:intergenic 35.0%
ACCAAACACAACAACAACAA+TGG - chr8_1:66763731-66763750 Msa1208580:three_prime_UTR 35.0%
! ACCATTGTTGTTGTTGTGTT+TGG + chr8_1:66763735-66763754 None:intergenic 35.0%
ACAACAACAATGGTGAATAC+TGG - chr8_1:66763741-66763760 Msa1208580:three_prime_UTR 35.0%
! TCAATCGCAACTTGTTCTTT+CGG + chr8_1:66763771-66763790 None:intergenic 35.0%
TTCAGAATGTTGCTCGATAT+TGG - chr8_1:66764271-66764290 Msa1208580:CDS 35.0%
!!! AGCTTTTGAAACTCTAGACT+CGG + chr8_1:66764491-66764510 None:intergenic 35.0%
TGCAATTTCTGATATGCAGA+AGG - chr8_1:66764531-66764550 Msa1208580:CDS 35.0%
CGTTATACCATAGCAGAATT+TGG - chr8_1:66764627-66764646 Msa1208580:CDS 35.0%
TCGAGAATAGCAGAAAATAG+TGG + chr8_1:66764761-66764780 None:intergenic 35.0%
CTATTCTCGATTGACAACAT+TGG - chr8_1:66764771-66764790 Msa1208580:CDS 35.0%
! TTCAGAACTAAAAGCACAAC+TGG - chr8_1:66764942-66764961 Msa1208580:CDS 35.0%
! CTATACATTTTCCGTGTGAA+TGG - chr8_1:66765126-66765145 Msa1208580:intron 35.0%
!! ATTTTCCGTGTGAATGGATT+TGG - chr8_1:66765132-66765151 Msa1208580:intron 35.0%
AAACTAAGCTTCAAGCTTGT+AGG + chr8_1:66765436-66765455 None:intergenic 35.0%
AAATGCGCTATATGAAGACA+TGG - chr8_1:66765903-66765922 Msa1208580:CDS 35.0%
TATATGAAGACATGGTTCAG+CGG - chr8_1:66765911-66765930 Msa1208580:CDS 35.0%
TCTAGTAGATTGATTACTGG+GGG - chr8_1:66766102-66766121 Msa1208580:intron 35.0%
AAAGTGTGGGATACAAATAC+AGG - chr8_1:66766141-66766160 Msa1208580:intron 35.0%
TCCTTAAGTTCAAGTCTTAC+TGG - chr8_1:66766165-66766184 Msa1208580:intron 35.0%
CTCAAACAACTTGTATGTGT+GGG - chr8_1:66766254-66766273 Msa1208580:intron 35.0%
TTTATCTGTGTGTCCAGTAA+GGG + chr8_1:66766307-66766326 None:intergenic 35.0%
ACACACAGATAAAGTTTGTG+CGG - chr8_1:66766314-66766333 Msa1208580:intron 35.0%
ACGACCGTACTATAAAAGTT+TGG - chr8_1:66766382-66766401 Msa1208580:CDS 35.0%
CGACCGTACTATAAAAGTTT+GGG - chr8_1:66766383-66766402 Msa1208580:CDS 35.0%
! AAAGTTTGGGACTTGATGAA+AGG - chr8_1:66766396-66766415 Msa1208580:CDS 35.0%
ATCGACATGTCCAGAAAATA+TGG + chr8_1:66766490-66766509 None:intergenic 35.0%
! ATATTTTCTGGACATGTCGA+TGG - chr8_1:66766489-66766508 Msa1208580:intron 35.0%
TCAATATCCCTTTCTCGAAA+TGG - chr8_1:66766585-66766604 Msa1208580:intron 35.0%
TTAACAGAGTGGCTTCTAAT+TGG - chr8_1:66766697-66766716 Msa1208580:intron 35.0%
GGAATGGAATTGTTTCAATC+TGG - chr8_1:66766895-66766914 Msa1208580:intron 35.0%
TTTCTATCTGGTCATAGTGA+CGG - chr8_1:66766983-66767002 Msa1208580:intron 35.0%
! AAGTTGTTCCTTGTTTAGAC+AGG - chr8_1:66767062-66767081 Msa1208580:CDS 35.0%
TTCTTACGGACCCACAATAA+AGG + chr8_1:66763989-66764008 None:intergenic 40.0%
GTTATTAACTCTTGTAGCGC+CGG - chr8_1:66764056-66764075 Msa1208580:CDS 40.0%
! ACACATTCAATCAGAAGTGC+CGG + chr8_1:66764078-66764097 None:intergenic 40.0%
!! GCTCGATATTGGTGTTAAGT+TGG - chr8_1:66764282-66764301 Msa1208580:CDS 40.0%
!! TTGGTGTTAAGTTGGTTGCT+TGG - chr8_1:66764290-66764309 Msa1208580:CDS 40.0%
TTGGTTGCTTGGATAGTTGA+TGG - chr8_1:66764301-66764320 Msa1208580:CDS 40.0%
!!! TGTTGTTGAAGGGTTTTGAG+TGG - chr8_1:66764377-66764396 Msa1208580:CDS 40.0%
GAAAGAGAAAGCAGAGAACT+TGG - chr8_1:66764399-66764418 Msa1208580:CDS 40.0%
TACTTCCACAACAAGTTGCT+CGG + chr8_1:66764467-66764486 None:intergenic 40.0%
AGAAGGAGTTGACAGAATTG+AGG - chr8_1:66764548-66764567 Msa1208580:CDS 40.0%
GGTTTGTCCAAATTCTGCTA+TGG + chr8_1:66764637-66764656 None:intergenic 40.0%
GCTATAGCACTATTGTGTAG+CGG - chr8_1:66764723-66764742 Msa1208580:CDS 40.0%
! CTCGTCCAGTATACAACTTT+TGG - chr8_1:66765086-66765105 Msa1208580:intron 40.0%
CAAAGCCAAATCCATTCACA+CGG + chr8_1:66765140-66765159 None:intergenic 40.0%
CAGCAATTTCACACCAACAT+TGG - chr8_1:66765487-66765506 Msa1208580:intron 40.0%
TTGTTCACAACAGTCTCGTT+AGG + chr8_1:66765655-66765674 None:intergenic 40.0%
!! GTTCACATCATAGTCTTGTG+AGG + chr8_1:66765797-66765816 None:intergenic 40.0%
! TGGTCTAGAACAACTTGCAA+GGG - chr8_1:66765945-66765964 Msa1208580:CDS 40.0%
ATTGTTCGTCGAAGTGAAGA+AGG - chr8_1:66765982-66766001 Msa1208580:CDS 40.0%
TCCCTTCCAATTGCAAATAC+AGG - chr8_1:66766031-66766050 Msa1208580:intron 40.0%
GCCTGTATTTGCAATTGGAA+GGG + chr8_1:66766035-66766054 None:intergenic 40.0%
AGCCTGTATTTGCAATTGGA+AGG + chr8_1:66766036-66766055 None:intergenic 40.0%
TACAGGCTAAATGCACATGA+AGG - chr8_1:66766048-66766067 Msa1208580:intron 40.0%
AGGATCGTTCAGTTAAAGTG+TGG - chr8_1:66766127-66766146 Msa1208580:intron 40.0%
GGATCGTTCAGTTAAAGTGT+GGG - chr8_1:66766128-66766147 Msa1208580:intron 40.0%
GCCAGTAAGACTTGAACTTA+AGG + chr8_1:66766169-66766188 None:intergenic 40.0%
GCTCAAACAACTTGTATGTG+TGG - chr8_1:66766253-66766272 Msa1208580:intron 40.0%
CTTTATCTGTGTGTCCAGTA+AGG + chr8_1:66766308-66766327 None:intergenic 40.0%
! GATGGACAGACCATATTTTC+TGG - chr8_1:66766477-66766496 Msa1208580:CDS 40.0%
GACATGTCGATGGTAATCTT+CGG - chr8_1:66766499-66766518 Msa1208580:intron 40.0%
TCGATGGTAATCTTCGGTTA+TGG - chr8_1:66766505-66766524 Msa1208580:intron 40.0%
CGATGGTAATCTTCGGTTAT+GGG - chr8_1:66766506-66766525 Msa1208580:intron 40.0%
AGAAAGGGATATTGACGTGA+CGG + chr8_1:66766580-66766599 None:intergenic 40.0%
! GGAAATATTGCATTGACCAG+TGG - chr8_1:66766606-66766625 Msa1208580:intron 40.0%
! ATATTGCATTGACCAGTGGA+AGG - chr8_1:66766610-66766629 Msa1208580:intron 40.0%
! TATTGCATTGACCAGTGGAA+GGG - chr8_1:66766611-66766630 Msa1208580:intron 40.0%
TTTGTTTGATGTGCGATCTC+TGG - chr8_1:66766647-66766666 Msa1208580:intron 40.0%
! CTGATGGATCTGTGCATATA+TGG - chr8_1:66766769-66766788 Msa1208580:intron 40.0%
!! GGTATGGGATTGTTTCTATC+TGG - chr8_1:66766971-66766990 Msa1208580:intron 40.0%
AATGGTGTCCTGTCTAAACA+AGG + chr8_1:66767073-66767092 None:intergenic 40.0%
GGTAATTAACCTAGGAACAG+CGG - chr8_1:66767262-66767281 Msa1208580:five_prime_UTR 40.0%
TTGTACGTGGGACCTATTTC+CGG - chr8_1:66763629-66763648 Msa1208580:three_prime_UTR 45.0%
AGACTAGAGAGACCGGAAAT+AGG + chr8_1:66763644-66763663 None:intergenic 45.0%
AAACGCCATCTTCTCGAAGA+AGG - chr8_1:66763822-66763841 Msa1208580:three_prime_UTR 45.0%
! CTAGAAAGTGCGAGAAAAGC+AGG + chr8_1:66763858-66763877 None:intergenic 45.0%
TTCTAGACCCATCGTTTCTC+AGG - chr8_1:66763872-66763891 Msa1208580:three_prime_UTR 45.0%
GTACGTACCTGAGAAACGAT+GGG + chr8_1:66763882-66763901 None:intergenic 45.0%
TGTCAGTGTCTGACATGTGT+CGG - chr8_1:66764097-66764116 Msa1208580:CDS 45.0%
GAAAGCAGAGAACTTGGAAG+TGG - chr8_1:66764405-66764424 Msa1208580:CDS 45.0%
!! GTTATCCGAGCAACTTGTTG+TGG - chr8_1:66764459-66764478 Msa1208580:CDS 45.0%
TTGTCCAATAGCGGCTATAG+TGG - chr8_1:66764693-66764712 Msa1208580:CDS 45.0%
! CGTGTGAATGGATTTGGCTT+TGG - chr8_1:66765138-66765157 Msa1208580:intron 45.0%
GGCAAGTTGTGCAATCTTGA+CGG - chr8_1:66765159-66765178 Msa1208580:intron 45.0%
AGGTAAATGACACTTGCCAG+TGG + chr8_1:66765464-66765483 None:intergenic 45.0%
TTGGTGTGAAATTGCTGAGC+AGG + chr8_1:66765484-66765503 None:intergenic 45.0%
GCGCATTTGCCTAAAGAGAT+GGG + chr8_1:66765891-66765910 None:intergenic 45.0%
AGCGCATTTGCCTAAAGAGA+TGG + chr8_1:66765892-66765911 None:intergenic 45.0%
! GTGGTCTAGAACAACTTGCA+AGG - chr8_1:66765944-66765963 Msa1208580:CDS 45.0%
ACAACTTGCAAGGGAACAAG+TGG - chr8_1:66765954-66765973 Msa1208580:CDS 45.0%
AGGCTAAATGCACATGAAGG+AGG - chr8_1:66766051-66766070 Msa1208580:intron 45.0%
TAGATTGATTACTGGGGGAC+AGG - chr8_1:66766107-66766126 Msa1208580:intron 45.0%
TGAGATCCAATACTGAGCCA+AGG + chr8_1:66766194-66766213 None:intergenic 45.0%
TATGTGTGGGATCTTAGCTC+AGG - chr8_1:66766267-66766286 Msa1208580:intron 45.0%
! TGTGTCCAGTAAGGGTATGA+CGG + chr8_1:66766299-66766318 None:intergenic 45.0%
! TTGTGCGGTTGATGTTAGCA+AGG - chr8_1:66766329-66766348 Msa1208580:CDS 45.0%
!! CAAAGAGCATTGCAGTTGCT+GGG + chr8_1:66766447-66766466 None:intergenic 45.0%
TATGGGACATTCAGAGTGGA+AGG - chr8_1:66766523-66766542 Msa1208580:intron 45.0%
GTGCAAATTATCCCTTCCAC+TGG + chr8_1:66766625-66766644 None:intergenic 45.0%
AGAAGCCACTCTGTTAACTG+TGG + chr8_1:66766694-66766713 None:intergenic 45.0%
ACAACAATCATGTTGCCGCT+GGG - chr8_1:66766742-66766761 Msa1208580:intron 45.0%
CTTCTGTTCTCTGTTGTAGC+TGG - chr8_1:66766838-66766857 Msa1208580:intron 45.0%
TGTTGTAGCTGGAGTGGAAT+GGG - chr8_1:66766849-66766868 Msa1208580:intron 45.0%
ATTCCTGTCAGCTGAAGCTA+GGG + chr8_1:66766880-66766899 None:intergenic 45.0%
ATCTGGTCATAATGGCTGTG+TGG - chr8_1:66766912-66766931 Msa1208580:intron 45.0%
TATCTAACCATGCCATTGGC+AGG - chr8_1:66767238-66767257 Msa1208580:five_prime_UTR 45.0%
GGTTAATTACCACCTGCCAA+TGG + chr8_1:66767253-66767272 None:intergenic 45.0%
TGGCAGGTGGTAATTAACCT+AGG - chr8_1:66767254-66767273 Msa1208580:five_prime_UTR 45.0%
GGTACGTACCTGAGAAACGA+TGG + chr8_1:66763883-66763902 None:intergenic 50.0%
AGCACCACTATAGCCGCTAT+TGG + chr8_1:66764700-66764719 None:intergenic 50.0%
GGATGCTGAACGCCTAAATG+AGG - chr8_1:66765044-66765063 Msa1208580:intron 50.0%
!! AAGCTTAGTTTGCCTGCCAC+TGG - chr8_1:66765445-66765464 Msa1208580:intron 50.0%
AAATGACACTTGCCAGTGGC+AGG + chr8_1:66765460-66765479 None:intergenic 50.0%
AAGACATGGTTCAGCGGCTA+AGG - chr8_1:66765917-66765936 Msa1208580:CDS 50.0%
AGACATGGTTCAGCGGCTAA+GGG - chr8_1:66765918-66765937 Msa1208580:CDS 50.0%
CTTGCAAGGGAACAAGTGGA+TGG - chr8_1:66765958-66765977 Msa1208580:CDS 50.0%
! TCAAGTCTTACTGGCTGCCT+TGG - chr8_1:66766174-66766193 Msa1208580:intron 50.0%
!! GCAAAGAGCATTGCAGTTGC+TGG + chr8_1:66766448-66766467 None:intergenic 50.0%
GCTCTTTGCTTCAGCACAGA+TGG - chr8_1:66766459-66766478 Msa1208580:CDS 50.0%
CGGTTATGGGACATTCAGAG+TGG - chr8_1:66766519-66766538 Msa1208580:intron 50.0%
! GTGCGATCTCTGGAAGTTTG+TGG - chr8_1:66766657-66766676 Msa1208580:intron 50.0%
ACGAGCCACAGTTAACAGAG+TGG - chr8_1:66766686-66766705 Msa1208580:intron 50.0%
GCGGCAACATGATTGTTGTC+TGG + chr8_1:66766741-66766760 None:intergenic 50.0%
GACAACAATCATGTTGCCGC+TGG - chr8_1:66766741-66766760 Msa1208580:intron 50.0%
AGATCCATCAGTAGACCCAG+CGG + chr8_1:66766760-66766779 None:intergenic 50.0%
GTTCTCTGTTGTAGCTGGAG+TGG - chr8_1:66766843-66766862 Msa1208580:intron 50.0%
CTGTTGTAGCTGGAGTGGAA+TGG - chr8_1:66766848-66766867 Msa1208580:intron 50.0%
TTCCTGTCAGCTGAAGCTAG+GGG + chr8_1:66766879-66766898 None:intergenic 50.0%
CATTCCTGTCAGCTGAAGCT+AGG + chr8_1:66766881-66766900 None:intergenic 50.0%
CTAGCTTCAGCTGACAGGAA+TGG - chr8_1:66766879-66766898 Msa1208580:intron 50.0%
ATCTGGTCATAGTGACGGTG+TGG - chr8_1:66766988-66767007 Msa1208580:intron 50.0%
ATTACCACCTGCCAATGGCA+TGG + chr8_1:66767248-66767267 None:intergenic 50.0%
CAGGTGGAGACTAGAGAGAC+CGG + chr8_1:66763651-66763670 None:intergenic 55.0%
GAGCGCCTTCTTCGAGAAGA+TGG + chr8_1:66763830-66763849 None:intergenic 55.0%
TGGCTGCCTTGGCTCAGTAT+TGG - chr8_1:66766185-66766204 Msa1208580:intron 55.0%
CGAGTCCGTCATACCCTTAC+TGG - chr8_1:66766291-66766310 Msa1208580:intron 55.0%
GAGTGGAAGGCTGCTAAGTG+AGG - chr8_1:66766536-66766555 Msa1208580:intron 55.0%
AACCCCTAGCTTCAGCTGAC+AGG - chr8_1:66766874-66766893 Msa1208580:intron 55.0%
CTAACCATGCCATTGGCAGG+TGG - chr8_1:66767241-66767260 Msa1208580:five_prime_UTR 55.0%
GTTCAGCGGCTAAGGGCTAG+TGG - chr8_1:66765925-66765944 Msa1208580:CDS 60.0%
GTTGCCGCTGGGTCTACTGA+TGG - chr8_1:66766753-66766772 Msa1208580:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66763609 66767286 66763609 ID=Msa1208580;Name=Msa1208580
chr8_1 mRNA 66763609 66767286 66763609 ID=Msa1208580-mRNA-1;Parent=Msa1208580;Name=Msa1208580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=141|1|1|1|1|1|4|363|514
chr8_1 exon 66763609 66764994 66763609 ID=Msa1208580-mRNA-1:exon:21988;Parent=Msa1208580-mRNA-1
chr8_1 exon 66765830 66766025 66765830 ID=Msa1208580-mRNA-1:exon:21987;Parent=Msa1208580-mRNA-1
chr8_1 exon 66766326 66766507 66766326 ID=Msa1208580-mRNA-1:exon:21986;Parent=Msa1208580-mRNA-1
chr8_1 exon 66767002 66767286 66767002 ID=Msa1208580-mRNA-1:exon:21985;Parent=Msa1208580-mRNA-1
chr8_1 five_prime_UTR 66767146 66767286 66767146 ID=Msa1208580-mRNA-1:five_prime_utr;Parent=Msa1208580-mRNA-1
chr8_1 CDS 66767002 66767145 66767002 ID=Msa1208580-mRNA-1:cds;Parent=Msa1208580-mRNA-1
chr8_1 CDS 66766326 66766507 66766326 ID=Msa1208580-mRNA-1:cds;Parent=Msa1208580-mRNA-1
chr8_1 CDS 66765830 66766025 66765830 ID=Msa1208580-mRNA-1:cds;Parent=Msa1208580-mRNA-1
chr8_1 CDS 66763972 66764994 66763972 ID=Msa1208580-mRNA-1:cds;Parent=Msa1208580-mRNA-1
chr8_1 three_prime_UTR 66763609 66763971 66763609 ID=Msa1208580-mRNA-1:three_prime_utr;Parent=Msa1208580-mRNA-1
Gene Sequence

>Msa1208580

ATGGTGAATACTGGAAGACCGAAAGAACAAGTTGCGATTGATGCAATCAATTATGCTATGAAAGCTCTCAAGAAACGCCATCTTCTCGAAGAAGGCGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATCGTTTCTCAGGGTTTTGAGTGGAAAGAGAAAGCAGAGAACTTGGAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTATCCGAGCAACTTGTTGTGGAAGTAGCCGAGTCTAGAGTTTCAAAAGCTTCCCTTCAAGAGAAAGAAAATGCAATTTCTGATATGCAGAAGGAGTTGACAGAATTGAGGGATGAGTGCTCTCAATTAAAGACAGATTTGGAGCAAAAGACTAAAGAAGTAGAATTAGTTCTGAGCGAGAATTCAGAACTAAAAGCACAACTGGAGCAGATGACTACTAAAGCTAATGAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTTGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCGCTATATGAAGACATGGTTCAGCGGCTAAGGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAAGTGGATGGAATTGTTCGTCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCAATTGCAAATACAGGCTAAATGCACATGAAGGAGGTTGTGCTTCCTTATTGTTCGAGTACAATTCTAGTAGATTGATTACTGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCCTTAAGTTCAAGTCTTACTGGCTGCCTTGGCTCAGTATTGGATCTCACTATCACCAATGATAATCGATCTGTTATTGCTGCGAGCAGCTCAAACAACTTGTATGTGTGGGATCTTAGCTCAGGTCGAGTCCGTCATACCCTTACTGGACACACAGATAAAGTTTGTGCGGTTGATGTTAGCAAGGTTTCGAGTCGTCTTGTTGTCAGTGCAGCTTACGACCGTACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAACACAATCATGTTTCCCAGCAACTGCAATGCTCTTTGCTTCAGCACAGATGGACAGACCATATTTTCTGGACATGTCGATGGTAATCTTCGGTTATGGGACATTCAGAGTGGAAGGCTGCTAAGTGAGGTTGCTGCACATTCACACGCCGTCACGTCAATATCCCTTTCTCGAAATGGAAATATTGCATTGACCAGTGGAAGGGATAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGTACATTACGAGCCACAGTTAACAGAGTGGCTTCTAATTGGAGTCGCTCATGTATCAGTCCAGACAACAATCATGTTGCCGCTGGGTCTACTGATGGATCTGTGCATATATGGTCAATATCTAAAGGTGAAATAATCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTCTGTTGTAGCTGGAGTGGAATGGGAAAACCCCTAGCTTCAGCTGACAGGAATGGAATTGTTTCAATCTGGTCATAA

Protein sequence

>Msa1208580

MVNTGRPKEQVAIDAINYAMKALKKRHLLEEGAHAPAFLALSRPIVSQGFEWKEKAENLEVELQQCYKAQSRLSEQLVVEVAESRVSKASLQEKENAISDMQKELTELRDECSQLKTDLEQKTKEVELVLSENSELKAQLEQMTTKANEAEAENKMLIDRLMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSNCKYRLNAHEGGCASLLFEYNSSRLITGGQDRSVKVWDTNTGSLSSSLTGCLGSVLDLTITNDNRSVIAASSSNNLYVWDLSSGRVRHTLTGHTDKVCAVDVSKVSSRLVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSTDGQTIFSGHVDGNLRLWDIQSGRLLSEVAAHSHAVTSISLSRNGNIALTSGRDNLHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNNHVAAGSTDGSVHIWSISKGEIISTLKEHTSSVLCCSWSGMGKPLASADRNGIVSIWS*