Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606470 | XP_007152621.1 | 42.955 | 291 | 111 | 7 | 1 | 277 | 1 | 250 | 1.18e-53 | 189 |
| Msa0606470 | XP_007152621.1 | 66.176 | 68 | 23 | 0 | 75 | 142 | 190 | 257 | 1.56e-18 | 96.3 |
| Msa0606470 | XP_007152621.1 | 70.000 | 60 | 18 | 0 | 283 | 342 | 47 | 106 | 2.21e-15 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606470 | sp|Q9SQ67|COR14_PAPSO | 31.228 | 285 | 151 | 8 | 1 | 277 | 1 | 248 | 5.64e-26 | 108 |
| Msa0606470 | sp|Q9SQ67|COR14_PAPSO | 50.000 | 78 | 38 | 1 | 266 | 342 | 29 | 106 | 1.19e-16 | 82.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014590 | Msa0606470 | 0.834209 | 3.421660e-56 | -8.615850e-47 |
| Msa0030090 | Msa0606470 | 0.812332 | 4.470679e-51 | -8.615850e-47 |
| Msa0063540 | Msa0606470 | 0.817178 | 3.773541e-52 | -8.615850e-47 |
| Msa0081120 | Msa0606470 | -0.801270 | 9.747719e-49 | -8.615850e-47 |
| Msa0606470 | Msa0608780 | -0.812253 | 4.652726e-51 | -8.615850e-47 |
| Msa0606470 | Msa0645060 | 0.837826 | 4.133894e-57 | -8.615850e-47 |
| Msa0606470 | Msa0649250 | -0.812604 | 3.899329e-51 | -8.615850e-47 |
| Msa0606470 | Msa0684560 | 0.835740 | 1.406889e-56 | -8.615850e-47 |
| Msa0606470 | Msa0739720 | 0.815533 | 8.806918e-52 | -8.615850e-47 |
| Msa0606470 | Msa0774660 | 0.806443 | 8.204268e-50 | -8.615850e-47 |
| Msa0606470 | Msa0932140 | 0.800775 | 1.230077e-48 | -8.615850e-47 |
| Msa0606470 | Msa1002820 | 0.816808 | 4.569901e-52 | -8.615850e-47 |
| Msa0606470 | Msa1006030 | 0.803509 | 3.369852e-49 | -8.615850e-47 |
| Msa0606470 | Msa1029860 | 0.805420 | 1.346837e-49 | -8.615850e-47 |
| Msa0606470 | Msa1066150 | 0.815993 | 6.953753e-52 | -8.615850e-47 |
| Msa0606470 | Msa1068780 | 0.806734 | 7.123378e-50 | -8.615850e-47 |
| Msa0606470 | Msa1106680 | 0.802725 | 4.896306e-49 | -8.615850e-47 |
| Msa0606470 | Msa1108560 | 0.819148 | 1.352335e-52 | -8.615850e-47 |
| Msa0606470 | Msa1127840 | 0.809108 | 2.227319e-50 | -8.615850e-47 |
| Msa0606470 | Msa1156740 | 0.805473 | 1.312243e-49 | -8.615850e-47 |
| Msa0606470 | Msa1181090 | 0.825693 | 4.078241e-54 | -8.615850e-47 |
| Msa0606470 | Msa1191350 | 0.801366 | 9.316579e-49 | -8.615850e-47 |
| Msa0606470 | Msa1191640 | 0.837687 | 4.486701e-57 | -8.615850e-47 |
| Msa0606470 | Msa1225890 | 0.826074 | 3.311211e-54 | -8.615850e-47 |
| Msa0606470 | Msa1228460 | -0.805300 | 1.426554e-49 | -8.615850e-47 |
| Msa0606470 | Msa1236860 | -0.816133 | 6.470490e-52 | -8.615850e-47 |
| Msa0606470 | Msa1238250 | 0.801546 | 8.558522e-49 | -8.615850e-47 |
| Msa0606470 | Msa1317240 | -0.803213 | 3.881056e-49 | -8.615850e-47 |
| Msa0606470 | Msa1319030 | 0.804621 | 1.978669e-49 | -8.615850e-47 |
| Msa0606470 | Msa1319190 | 0.800578 | 1.349618e-48 | -8.615850e-47 |
| Msa0606470 | Msa1322500 | 0.802743 | 4.853529e-49 | -8.615850e-47 |
| Msa0606470 | Msa1355340 | 0.803265 | 3.786530e-49 | -8.615850e-47 |
| Msa0606470 | Msa1387480 | 0.825633 | 4.214956e-54 | -8.615850e-47 |
| Msa0606470 | Msa1406840 | 0.820180 | 7.860322e-53 | -8.615850e-47 |
| Msa0606470 | Msa1441450 | 0.833070 | 6.587301e-56 | -8.615850e-47 |
| Msa0606470 | Msa1461660 | 0.811822 | 5.776930e-51 | -8.615850e-47 |
| Msa0125600 | Msa0606470 | 0.831368 | 1.737250e-55 | -8.615850e-47 |
| Msa0170080 | Msa0606470 | 0.815269 | 1.008076e-51 | -8.615850e-47 |
| Msa0190670 | Msa0606470 | 0.800551 | 1.366871e-48 | -8.615850e-47 |
| Msa0190890 | Msa0606470 | 0.804277 | 2.333674e-49 | -8.615850e-47 |
| Msa0220090 | Msa0606470 | 0.853014 | 3.160057e-61 | -8.615850e-47 |
| Msa0238110 | Msa0606470 | 0.813750 | 2.185204e-51 | -8.615850e-47 |
| Msa0370620 | Msa0606470 | 0.803004 | 4.287270e-49 | -8.615850e-47 |
| Msa0396860 | Msa0606470 | 0.874845 | 4.910410e-68 | -8.615850e-47 |
| Msa0423200 | Msa0606470 | 0.806758 | 7.039809e-50 | -8.615850e-47 |
| Msa0423220 | Msa0606470 | 0.806470 | 8.098164e-50 | -8.615850e-47 |
| Msa0471390 | Msa0606470 | 0.808373 | 3.197274e-50 | -8.615850e-47 |
| Msa0261400 | Msa0606470 | 0.862632 | 4.416332e-64 | -8.615850e-47 |
| Msa0269240 | Msa0606470 | 0.820892 | 5.393940e-53 | -8.615850e-47 |
| Msa0274250 | Msa0606470 | 0.803388 | 3.569557e-49 | -8.615850e-47 |
| Msa0278950 | Msa0606470 | 0.816040 | 6.787268e-52 | -8.615850e-47 |
| Msa0299030 | Msa0606470 | 0.849224 | 3.708998e-60 | -8.615850e-47 |
| Msa0342660 | Msa0606470 | 0.801859 | 7.380339e-49 | -8.615850e-47 |
| Msa0348370 | Msa0606470 | 0.807820 | 4.192593e-50 | -8.615850e-47 |
| Msa0523720 | Msa0606470 | 0.803992 | 2.675584e-49 | -8.615850e-47 |
| Msa0583390 | Msa0606470 | 0.831720 | 1.422498e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606470 | MtrunA17_Chr4g0036311 | 91.566 | 83 | 7 | 0 | 135 | 217 | 1 | 83 | 3.85e-49 | 160 |
| Msa0606470 | MtrunA17_Chr4g0036311 | 90.789 | 76 | 7 | 0 | 1 | 76 | 1 | 76 | 6.77e-43 | 144 |
| Msa0606470 | MtrunA17_Chr4g0036311 | 85.000 | 60 | 9 | 0 | 283 | 342 | 47 | 106 | 5.35e-29 | 108 |
| Msa0606470 | MtrunA17_Chr4g0036291 | 87.952 | 83 | 10 | 0 | 135 | 217 | 1 | 83 | 1.29e-46 | 154 |
| Msa0606470 | MtrunA17_Chr4g0036291 | 94.737 | 76 | 4 | 0 | 1 | 76 | 1 | 76 | 7.87e-45 | 149 |
| Msa0606470 | MtrunA17_Chr4g0036291 | 88.333 | 60 | 7 | 0 | 283 | 342 | 47 | 106 | 1.41e-29 | 109 |
| Msa0606470 | MtrunA17_Chr4g0036251 | 74.699 | 83 | 15 | 2 | 135 | 217 | 1 | 77 | 3.96e-37 | 129 |
| Msa0606470 | MtrunA17_Chr4g0036251 | 73.684 | 76 | 14 | 2 | 1 | 76 | 1 | 70 | 1.01e-31 | 115 |
| Msa0606470 | MtrunA17_Chr4g0036251 | 83.607 | 61 | 10 | 0 | 282 | 342 | 40 | 100 | 5.36e-29 | 107 |
| Msa0606470 | MtrunA17_Chr6g0480021 | 74.699 | 83 | 21 | 0 | 135 | 217 | 1 | 83 | 4.03e-35 | 130 |
| Msa0606470 | MtrunA17_Chr6g0480021 | 78.947 | 76 | 16 | 0 | 1 | 76 | 1 | 76 | 1.97e-33 | 125 |
| Msa0606470 | MtrunA17_Chr6g0480021 | 70.588 | 68 | 20 | 0 | 75 | 142 | 170 | 237 | 2.06e-26 | 106 |
| Msa0606470 | MtrunA17_Chr6g0480021 | 72.131 | 61 | 17 | 0 | 217 | 277 | 170 | 230 | 5.88e-23 | 97.1 |
| Msa0606470 | MtrunA17_Chr6g0480021 | 66.038 | 53 | 17 | 1 | 283 | 334 | 47 | 99 | 3.43e-13 | 69.3 |
| Msa0606470 | MtrunA17_Chr4g0036301 | 91.803 | 61 | 5 | 0 | 75 | 135 | 39 | 99 | 2.99e-33 | 121 |
| Msa0606470 | MtrunA17_Chr4g0036301 | 88.525 | 61 | 7 | 0 | 217 | 277 | 39 | 99 | 3.40e-32 | 118 |
| Msa0606470 | MtrunA17_Chr4g0036321 | 90.164 | 61 | 6 | 0 | 217 | 277 | 39 | 99 | 9.52e-33 | 120 |
| Msa0606470 | MtrunA17_Chr4g0036321 | 90.164 | 61 | 6 | 0 | 75 | 135 | 39 | 99 | 2.07e-32 | 119 |
| Msa0606470 | MtrunA17_Chr4g0036261 | 88.525 | 61 | 7 | 0 | 75 | 135 | 51 | 111 | 4.31e-32 | 118 |
| Msa0606470 | MtrunA17_Chr4g0036261 | 85.246 | 61 | 9 | 0 | 217 | 277 | 51 | 111 | 3.01e-30 | 114 |
| Msa0606470 | MtrunA17_Chr6g0480011 | 65.060 | 83 | 29 | 0 | 135 | 217 | 1 | 83 | 9.30e-31 | 119 |
| Msa0606470 | MtrunA17_Chr6g0480011 | 61.842 | 76 | 29 | 0 | 1 | 76 | 1 | 76 | 1.08e-25 | 105 |
| Msa0606470 | MtrunA17_Chr6g0480011 | 65.217 | 69 | 24 | 0 | 75 | 143 | 189 | 257 | 4.90e-24 | 100 |
| Msa0606470 | MtrunA17_Chr6g0480011 | 65.574 | 61 | 21 | 0 | 217 | 277 | 189 | 249 | 2.28e-20 | 90.1 |
| Msa0606470 | MtrunA17_Chr6g0480011 | 63.333 | 60 | 22 | 0 | 283 | 342 | 47 | 106 | 2.38e-17 | 81.6 |
| Msa0606470 | MtrunA17_Chr6g0479981 | 61.446 | 83 | 32 | 0 | 135 | 217 | 1 | 83 | 1.73e-30 | 117 |
| Msa0606470 | MtrunA17_Chr6g0479981 | 59.211 | 76 | 31 | 0 | 1 | 76 | 1 | 76 | 1.11e-25 | 104 |
| Msa0606470 | MtrunA17_Chr6g0479981 | 62.295 | 61 | 23 | 0 | 75 | 135 | 187 | 247 | 2.21e-17 | 81.6 |
| Msa0606470 | MtrunA17_Chr6g0479981 | 57.377 | 61 | 26 | 0 | 217 | 277 | 187 | 247 | 4.46e-16 | 77.8 |
| Msa0606470 | MtrunA17_Chr6g0479981 | 58.333 | 60 | 25 | 0 | 283 | 342 | 47 | 106 | 1.85e-15 | 76.3 |
| Msa0606470 | MtrunA17_Chr6g0479811 | 59.701 | 67 | 27 | 0 | 77 | 143 | 1 | 67 | 1.47e-21 | 88.2 |
| Msa0606470 | MtrunA17_Chr6g0479811 | 61.017 | 59 | 23 | 0 | 219 | 277 | 1 | 59 | 4.39e-18 | 79.0 |
| Msa0606470 | MtrunA17_Chr1g0173621 | 48.837 | 86 | 41 | 1 | 135 | 217 | 1 | 86 | 2.05e-20 | 90.1 |
| Msa0606470 | MtrunA17_Chr1g0173621 | 48.936 | 94 | 40 | 2 | 250 | 342 | 23 | 109 | 7.73e-17 | 80.1 |
| Msa0606470 | MtrunA17_Chr1g0173621 | 47.436 | 78 | 38 | 1 | 1 | 75 | 1 | 78 | 1.20e-16 | 79.7 |
| Msa0606470 | MtrunA17_Chr1g0173621 | 57.377 | 61 | 26 | 0 | 75 | 135 | 191 | 251 | 2.32e-15 | 75.9 |
| Msa0606470 | MtrunA17_Chr1g0173621 | 43.210 | 81 | 44 | 1 | 217 | 295 | 191 | 271 | 5.78e-12 | 65.9 |
| Msa0606470 | MtrunA17_Chr4g0018921 | 27.365 | 296 | 136 | 9 | 5 | 277 | 2 | 241 | 8.32e-20 | 88.6 |
| Msa0606470 | MtrunA17_Chr3g0121001 | 50.000 | 82 | 35 | 3 | 140 | 217 | 7 | 86 | 1.31e-15 | 76.6 |
| Msa0606470 | MtrunA17_Chr3g0121001 | 48.387 | 62 | 32 | 0 | 281 | 342 | 48 | 109 | 3.17e-12 | 66.6 |
| Msa0606470 | MtrunA17_Chr4g0036051 | 37.634 | 93 | 51 | 4 | 143 | 233 | 3 | 90 | 4.88e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606470 | AT1G59960.1 | 43.678 | 87 | 45 | 1 | 135 | 217 | 1 | 87 | 3.48e-18 | 84.3 |
| Msa0606470 | AT1G59960.1 | 45.570 | 79 | 39 | 1 | 1 | 75 | 1 | 79 | 5.34e-16 | 78.2 |
| Msa0606470 | AT1G59960.1 | 53.333 | 60 | 28 | 0 | 283 | 342 | 51 | 110 | 6.52e-14 | 72.0 |
| Msa0606470 | AT1G59960.1 | 46.875 | 64 | 34 | 0 | 75 | 138 | 192 | 255 | 8.21e-13 | 68.9 |
| Msa0606470 | AT1G59950.1 | 52.239 | 67 | 32 | 0 | 151 | 217 | 15 | 81 | 9.63e-17 | 80.1 |
| Msa0606470 | AT1G59950.1 | 52.459 | 61 | 29 | 0 | 282 | 342 | 44 | 104 | 6.39e-14 | 72.0 |
| Msa0606470 | AT1G59950.1 | 50.000 | 60 | 30 | 0 | 17 | 76 | 15 | 74 | 1.19e-13 | 71.2 |
| Msa0606470 | AT1G59950.1 | 50.000 | 64 | 32 | 0 | 75 | 138 | 186 | 249 | 5.78e-13 | 69.3 |
| Msa0606470 | AT2G21260.1 | 42.553 | 94 | 47 | 4 | 142 | 233 | 2 | 90 | 2.70e-13 | 70.1 |
| Msa0606470 | AT2G21250.2 | 37.895 | 95 | 52 | 4 | 142 | 234 | 2 | 91 | 3.02e-12 | 66.2 |
| Msa0606470 | AT2G21250.1 | 37.895 | 95 | 52 | 4 | 142 | 234 | 2 | 91 | 4.82e-12 | 66.2 |
| Msa0606470 | AT5G62420.1 | 45.205 | 73 | 38 | 2 | 145 | 217 | 8 | 78 | 6.63e-12 | 65.9 |
| Msa0606470 | AT5G62420.1 | 39.560 | 91 | 51 | 1 | 45 | 135 | 156 | 242 | 4.10e-11 | 63.5 |
| Msa0606470 | AT2G37770.2 | 52.459 | 61 | 29 | 0 | 75 | 135 | 181 | 241 | 8.86e-12 | 65.5 |
| Msa0606470 | AT2G37790.1 | 39.785 | 93 | 43 | 2 | 75 | 167 | 181 | 260 | 3.53e-11 | 63.9 |
Find 77 sgRNAs with CRISPR-Local
Find 550 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 4_2:+52835982 | Msa0606470:CDS |
| TGATGTCCTCACCTCAATTT+TGG | 0.191008 | 4_2:+52840168 | Msa0606470:CDS |
| TTGGTTGATGCCATTGAAAT+AGG | 0.299974 | 4_2:+52836001 | Msa0606470:CDS |
| TTGGTTGATGCCATTGAAAT+AGG | 0.299974 | 4_2:+52840187 | Msa0606470:CDS |
| AATATGCCAATGATAGGTTT+TGG | 0.303449 | 4_2:+52835932 | Msa0606470:CDS |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 4_2:+52840118 | Msa0606470:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 4_2:+52841134 | Msa0606470:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 4_2:+52840091 | Msa0606470:CDS |
| CCAGAGGTGATACTAAATTC+AGG | 0.400690 | 4_2:+52835905 | Msa0606470:CDS |
| TGCATGCTTGTAAGAACTAC+AGG | 0.412849 | 4_2:+52844372 | Msa0606470:CDS |
| AGGAGGGTACAAACTAAGTT+GGG | 0.414798 | 4_2:+52836908 | Msa0606470:CDS |
| AATGAACTCATCATGGCATC+AGG | 0.418023 | 4_2:+52841052 | Msa0606470:CDS |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4_2:-52835938 | None:intergenic |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4_2:-52840124 | None:intergenic |
| AATGAACCCATCATGGCATC+AGG | 0.424956 | 4_2:+52836827 | Msa0606470:CDS |
| CAGTAATCTTTACTTGAGAA+TGG | 0.432904 | 4_2:-52844558 | None:intergenic |
| CCTGAATTTAGTATCACCTC+TGG | 0.467537 | 4_2:-52835905 | None:intergenic |
| AGTTTCCCCTGATGCCATGA+TGG | 0.469908 | 4_2:-52836834 | None:intergenic |
| CCTGAATTTAGCATCACCTC+TGG | 0.475460 | 4_2:-52840091 | None:intergenic |
| GTTTCCCCTGATGCCATGAT+GGG | 0.491620 | 4_2:-52836833 | None:intergenic |
| AACATCAGTACACGATAACT+TGG | 0.492306 | 4_2:-52844504 | None:intergenic |
| AATGGCATCAACCAAAATTG+AGG | 0.495834 | 4_2:-52835993 | None:intergenic |
| AATGGCATCAACCAAAATTG+AGG | 0.495834 | 4_2:-52840179 | None:intergenic |
| TTGGGGTTCGCCTGCAGTGA+TGG | 0.500062 | 4_2:+52836926 | Msa0606470:CDS |
| ATTAAATTCTCCATCACTGC+AGG | 0.505336 | 4_2:-52841161 | None:intergenic |
| TAGGAGGGTACAAACTAAGT+TGG | 0.507601 | 4_2:+52836907 | Msa0606470:CDS |
| ATCGAATTCTCCATCACTGC+AGG | 0.507726 | 4_2:-52836936 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 4_2:+52840268 | Msa0606470:CDS |
| GTGTCAAAAGATTTAGAGCT+AGG | 0.520940 | 4_2:+52844446 | Msa0606470:CDS |
| CAGAGGTGATACTAAATTCA+GGG | 0.521393 | 4_2:+52835906 | Msa0606470:CDS |
| GTGTCAAAAGCTTTAGAGCT+AGG | 0.527948 | 4_2:+52836082 | Msa0606470:CDS |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 4_2:+52840092 | Msa0606470:CDS |
| TAGAAAGAAGAGTATAGCCC+AGG | 0.534817 | 4_2:+52836980 | Msa0606470:CDS |
| ATGCCTGTAGCCTATTTCAA+TGG | 0.544065 | 4_2:-52836011 | None:intergenic |
| ATGCCTGTAGCCTATTTCAA+TGG | 0.544065 | 4_2:-52840197 | None:intergenic |
| ATGCCATTGAAATAGGCTAC+AGG | 0.548301 | 4_2:+52836008 | Msa0606470:CDS |
| ATGCCATTGAAATAGGCTAC+AGG | 0.548301 | 4_2:+52840194 | Msa0606470:CDS |
| AGGACATCATGTGGTGGAGA+GGG | 0.552325 | 4_2:-52840154 | None:intergenic |
| AGGACTTCATGTGGTGGAGA+GGG | 0.561027 | 4_2:-52835968 | None:intergenic |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.561027 | 4_2:+52836858 | Msa0606470:CDS |
| AGGTGGAAATGAACTCATCA+TGG | 0.565825 | 4_2:+52841045 | Msa0606470:intron |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 4_2:+52841083 | Msa0606470:CDS |
| AGGTGGAAATGAACCCATCA+TGG | 0.580827 | 4_2:+52836820 | Msa0606470:intron |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4_2:+52836888 | Msa0606470:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4_2:+52841113 | Msa0606470:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 4_2:+52841102 | Msa0606470:CDS |
| TGAACCCATCATGGCATCAG+GGG | 0.585439 | 4_2:+52836829 | Msa0606470:CDS |
| AAGGAATCCATGTGAGTGCA+TGG | 0.586898 | 4_2:+52836877 | Msa0606470:CDS |
| GAGGACATCATGTGGTGGAG+AGG | 0.593214 | 4_2:-52840155 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4_2:+52836052 | Msa0606470:CDS |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4_2:+52840238 | Msa0606470:CDS |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4_2:+52844416 | Msa0606470:CDS |
| GAGGACTTCATGTGGTGGAG+AGG | 0.594677 | 4_2:-52835969 | None:intergenic |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4_2:-52836067 | None:intergenic |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4_2:-52840253 | None:intergenic |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4_2:-52844431 | None:intergenic |
| ATGAACTCATCATGGCATCA+GGG | 0.596474 | 4_2:+52841053 | Msa0606470:CDS |
| TAGAAAGAAAAGTGTAGCCA+AGG | 0.600315 | 4_2:+52841205 | Msa0606470:CDS |
| ATGAACCCATCATGGCATCA+GGG | 0.601111 | 4_2:+52836828 | Msa0606470:CDS |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.612070 | 4_2:+52840075 | Msa0606470:CDS |
| GTGGTGACCATGCACTCACA+TGG | 0.614668 | 4_2:-52836884 | None:intergenic |
| TGAACTCATCATGGCATCAG+GGG | 0.614858 | 4_2:+52841054 | Msa0606470:CDS |
| CTTAGTTTGTACCCTCCTAG+TGG | 0.627177 | 4_2:-52836903 | None:intergenic |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 4_2:-52841128 | None:intergenic |
| GATTCTGCTCAAAATTGCTG+AGG | 0.639021 | 4_2:+52836956 | Msa0606470:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.651978 | 4_2:+52836891 | Msa0606470:CDS |
| GGAAACAAACAAAGTTCCAG+AGG | 0.669203 | 4_2:+52835889 | Msa0606470:CDS |
| GGAGGGTACAAACTAAGTTG+GGG | 0.682661 | 4_2:+52836909 | Msa0606470:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.683706 | 4_2:-52835988 | None:intergenic |
| CATCAACCAAAATTGAGGTG+AGG | 0.683706 | 4_2:-52840174 | None:intergenic |
| GTGCATGGTCACCACTAGGA+GGG | 0.685225 | 4_2:+52836892 | Msa0606470:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4_2:+52841116 | Msa0606470:CDS |
| GCATGCTTGTAAGAACTACA+GGG | 0.696465 | 4_2:+52844373 | Msa0606470:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 4_2:-52835974 | None:intergenic |
| GAGGTGAGGACATCATGTGG+TGG | 0.741328 | 4_2:-52840160 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 4_2:-52835977 | None:intergenic |
| ATTGAGGTGAGGACATCATG+TGG | 0.753402 | 4_2:-52840163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTGAATTATAAAAT+AGG | - | chr4_2:52837100-52837119 | None:intergenic | 10.0% |
| !! | TTTACAATTTATAAATTGAA+TGG | - | chr4_2:52837749-52837768 | None:intergenic | 10.0% |
| !! | ATATATATAACATAATGAAA+AGG | - | chr4_2:52839836-52839855 | None:intergenic | 10.0% |
| !! | TGTTTAATTATATATATTTC+TGG | - | chr4_2:52843020-52843039 | None:intergenic | 10.0% |
| !!! | TTAATTTTTCTTTTCAATTT+TGG | - | chr4_2:52843234-52843253 | None:intergenic | 10.0% |
| !!! | TATTATTGTTTTGGTTTTTT+TGG | + | chr4_2:52836270-52836289 | Msa0606470:intron | 15.0% |
| !!! | ATTTTTTAGTAATCTTGAAT+TGG | + | chr4_2:52836299-52836318 | Msa0606470:intron | 15.0% |
| !! | AACTTCATTAAAATCTTAAT+TGG | - | chr4_2:52837063-52837082 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | chr4_2:52837375-52837394 | Msa0606470:intron | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | chr4_2:52837376-52837395 | Msa0606470:intron | 15.0% |
| !! | AATATATATAGATGAATGAA+AGG | + | chr4_2:52838857-52838876 | Msa0606470:intron | 15.0% |
| !!! | TACTTGTCTAATTTTATTTT+TGG | + | chr4_2:52840450-52840469 | Msa0606470:intron | 15.0% |
| !!! | AACTTCACTAAATTTTTAAT+GGG | - | chr4_2:52841477-52841496 | None:intergenic | 15.0% |
| !!! | AAACTTCACTAAATTTTTAA+TGG | - | chr4_2:52841478-52841497 | None:intergenic | 15.0% |
| !! | AAAAAAAGAATTAGAAAAAC+AGG | - | chr4_2:52841514-52841533 | None:intergenic | 15.0% |
| !!! | TAATTCTTTTTTTTTCTCAA+TGG | + | chr4_2:52841521-52841540 | Msa0606470:intron | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | - | chr4_2:52841594-52841613 | None:intergenic | 15.0% |
| !! | CATTAATATATATAGATGAA+AGG | + | chr4_2:52842792-52842811 | Msa0606470:intron | 15.0% |
| !! | ATAAAACAAACAAAAAACAT+AGG | - | chr4_2:52843666-52843685 | None:intergenic | 15.0% |
| !!! | ATTCTATTTTCTAATTAGTT+CGG | + | chr4_2:52844140-52844159 | Msa0606470:intron | 15.0% |
| !! | ACTTAAAAGAAGTAGAAAAA+AGG | - | chr4_2:52836226-52836245 | None:intergenic | 20.0% |
| !!! | CTTGTCTAATATTATTGTTT+TGG | + | chr4_2:52836261-52836280 | Msa0606470:intron | 20.0% |
| !!! | ACAATTCCTTTTGATATAAA+AGG | + | chr4_2:52836402-52836421 | Msa0606470:intron | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | chr4_2:52836410-52836429 | Msa0606470:intron | 20.0% |
| !!! | TATTGGATACTATAAGTTTT+GGG | - | chr4_2:52836644-52836663 | None:intergenic | 20.0% |
| !!! | TTATTGGATACTATAAGTTT+TGG | - | chr4_2:52836645-52836664 | None:intergenic | 20.0% |
| !!! | CATCATACAAATTCTTATTT+GGG | + | chr4_2:52836794-52836813 | Msa0606470:intron | 20.0% |
| !!! | ATAATTCAAGTTTTTTTCCA+TGG | + | chr4_2:52837105-52837124 | Msa0606470:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTCT+TGG | - | chr4_2:52837409-52837428 | None:intergenic | 20.0% |
| !!! | TTCTTTGTTTAAATATTCGA+TGG | + | chr4_2:52837532-52837551 | Msa0606470:intron | 20.0% |
| !!! | TCTTTGTTTAAATATTCGAT+GGG | + | chr4_2:52837533-52837552 | Msa0606470:intron | 20.0% |
| !! | ATATATAAGCTTATTCTTGA+GGG | + | chr4_2:52837847-52837866 | Msa0606470:intron | 20.0% |
| !!! | AAACATATTTTCTTCTTTCA+TGG | + | chr4_2:52838192-52838211 | Msa0606470:intron | 20.0% |
| !!! | AAAGATATTTTGACTTGTTT+AGG | - | chr4_2:52838342-52838361 | None:intergenic | 20.0% |
| !! | CATTCATCTATATATATTCA+TGG | - | chr4_2:52838855-52838874 | None:intergenic | 20.0% |
| !!! | GTTATAATTTTACATATTGC+TGG | - | chr4_2:52839084-52839103 | None:intergenic | 20.0% |
| !!! | TGTTTGTTTTGTTTATAGAA+GGG | - | chr4_2:52839695-52839714 | None:intergenic | 20.0% |
| !!! | ATGTTTGTTTTGTTTATAGA+AGG | - | chr4_2:52839696-52839715 | None:intergenic | 20.0% |
| !! | TTATGATACATCATAATTAC+AGG | + | chr4_2:52839937-52839956 | Msa0606470:intron | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | + | chr4_2:52840582-52840601 | Msa0606470:intron | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | chr4_2:52836410-52836429 | Msa0606470:intron | 20.0% |
| !! | TATGGAAAAATGTTATAGAT+TGG | + | chr4_2:52840617-52840636 | Msa0606470:intron | 20.0% |
| !! | ATGGAAAAATGTTATAGATT+GGG | + | chr4_2:52840618-52840637 | Msa0606470:intron | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | - | chr4_2:52840865-52840884 | None:intergenic | 20.0% |
| !! | ATATTAGATACCATATGTAA+AGG | - | chr4_2:52840866-52840885 | None:intergenic | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | + | chr4_2:52841018-52841037 | Msa0606470:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | - | chr4_2:52841270-52841289 | None:intergenic | 20.0% |
| !! | TATGTTTAGCCAATTAAAAA+TGG | + | chr4_2:52841269-52841288 | Msa0606470:intron | 20.0% |
| !! | ATGTTTAGCCAATTAAAAAT+GGG | + | chr4_2:52841270-52841289 | Msa0606470:intron | 20.0% |
| !!! | TCAAAAACAGTTTTCTTTTA+TGG | + | chr4_2:52841393-52841412 | Msa0606470:intron | 20.0% |
| !! | AAAACACTGAAATATTTGAT+TGG | + | chr4_2:52841772-52841791 | Msa0606470:intron | 20.0% |
| !! | AAACACTGAAATATTTGATT+GGG | + | chr4_2:52841773-52841792 | Msa0606470:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTCT+TGG | - | chr4_2:52837409-52837428 | None:intergenic | 20.0% |
| !! | AGTTAAATTTCAATTGCATA+AGG | - | chr4_2:52841997-52842016 | None:intergenic | 20.0% |
| !! | AAATTGTTCTTCATGAATTA+TGG | + | chr4_2:52842119-52842138 | Msa0606470:intron | 20.0% |
| !! | TATGTGTTATGAAAAGATAT+TGG | + | chr4_2:52842673-52842692 | Msa0606470:intron | 20.0% |
| !! | GTAGGATTATTATAACATAT+TGG | + | chr4_2:52843409-52843428 | Msa0606470:intron | 20.0% |
| !! | GATTATTATAACATATTGGA+TGG | + | chr4_2:52843413-52843432 | Msa0606470:intron | 20.0% |
| !!! | TAGACAAGAAATTTAAGATT+TGG | + | chr4_2:52843901-52843920 | Msa0606470:intron | 20.0% |
| !! | ATAACAATGACTTAGAATTA+AGG | + | chr4_2:52843979-52843998 | Msa0606470:intron | 20.0% |
| !!! | TAAGTCTAAATGATGTTTTA+CGG | + | chr4_2:52844343-52844362 | Msa0606470:intron | 20.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | chr4_2:52836411-52836430 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | chr4_2:52836409-52836428 | Msa0606470:intron | 25.0% |
| ! | TATGGAAGATTGTTATAGAT+TGG | + | chr4_2:52836437-52836456 | Msa0606470:intron | 25.0% |
| ! | ATGGAAGATTGTTATAGATT+GGG | + | chr4_2:52836438-52836457 | Msa0606470:intron | 25.0% |
| ! | GCATCATACAAATTCTTATT+TGG | + | chr4_2:52836793-52836812 | Msa0606470:intron | 25.0% |
| !! | ACAAATTCTTATTTGGGTTT+AGG | + | chr4_2:52836800-52836819 | Msa0606470:intron | 25.0% |
| ! | AATCTTAATTGGCTAAACAT+AGG | - | chr4_2:52837052-52837071 | None:intergenic | 25.0% |
| ! | TTGTTTCACATAACAATCTA+AGG | - | chr4_2:52837177-52837196 | None:intergenic | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr4_2:52837461-52837480 | Msa0606470:intron | 25.0% |
| ! | TAAACAAAGAATTCGCTTAA+GGG | - | chr4_2:52837523-52837542 | None:intergenic | 25.0% |
| ! | TTAAACAAAGAATTCGCTTA+AGG | - | chr4_2:52837524-52837543 | None:intergenic | 25.0% |
| ! | GTTAAAATTTCACTTGCATA+AGG | - | chr4_2:52837601-52837620 | None:intergenic | 25.0% |
| ! | AATAAGAGAAAACACTAAGA+AGG | + | chr4_2:52837655-52837674 | Msa0606470:intron | 25.0% |
| ! | TAAATTGTAAATTATGCCGA+AGG | + | chr4_2:52837758-52837777 | Msa0606470:intron | 25.0% |
| ! | AAATTGTAAATTATGCCGAA+GGG | + | chr4_2:52837759-52837778 | Msa0606470:intron | 25.0% |
| ! | CATATATAAGCTTATTCTTG+AGG | + | chr4_2:52837846-52837865 | Msa0606470:intron | 25.0% |
| ! | ACAAAAATGGTAATATCTAC+TGG | - | chr4_2:52837988-52838007 | None:intergenic | 25.0% |
| !!! | AGTAGATATTACCATTTTTG+TGG | + | chr4_2:52837987-52838006 | Msa0606470:intron | 25.0% |
| !!! | TTGTTCAGTATATTTTGGAA+TGG | - | chr4_2:52838062-52838081 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTCAGTATATTT+TGG | - | chr4_2:52838067-52838086 | None:intergenic | 25.0% |
| !! | AAATTTGTTCCTTGTGAATA+TGG | + | chr4_2:52838222-52838241 | Msa0606470:intron | 25.0% |
| ! | AGAAAAATTAAGCATATGCA+AGG | + | chr4_2:52838251-52838270 | Msa0606470:intron | 25.0% |
| ! | ACAATTCTTGAAATGATGAT+TGG | + | chr4_2:52838574-52838593 | Msa0606470:intron | 25.0% |
| ! | TTAACAACACATACAAGAAT+GGG | - | chr4_2:52838735-52838754 | None:intergenic | 25.0% |
| ! | TTTAACAACACATACAAGAA+TGG | - | chr4_2:52838736-52838755 | None:intergenic | 25.0% |
| ! | TCTCTGAATTTCAAATACTT+AGG | + | chr4_2:52838793-52838812 | Msa0606470:intron | 25.0% |
| ! | CTCTGAATTTCAAATACTTA+GGG | + | chr4_2:52838794-52838813 | Msa0606470:intron | 25.0% |
| !!! | AATGATTTTGTGTTGGTTAA+AGG | + | chr4_2:52838822-52838841 | Msa0606470:intron | 25.0% |
| ! | GTATGTATTAGCCAAAAAAT+TGG | + | chr4_2:52839253-52839272 | Msa0606470:intron | 25.0% |
| ! | ACAGATAACAATTATGTCAA+GGG | + | chr4_2:52839514-52839533 | Msa0606470:intron | 25.0% |
| !!! | GTTTGTTTTGTTTATAGAAG+GGG | - | chr4_2:52839694-52839713 | None:intergenic | 25.0% |
| !!! | TTCTCTTTTTGTTGATTTCA+AGG | - | chr4_2:52840049-52840068 | None:intergenic | 25.0% |
| ! | TCAACAAAAAGAGAAAAAGA+TGG | + | chr4_2:52840054-52840073 | Msa0606470:intron | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | chr4_2:52836411-52836430 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | chr4_2:52836409-52836428 | Msa0606470:intron | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | + | chr4_2:52840770-52840789 | Msa0606470:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | - | chr4_2:52840799-52840818 | None:intergenic | 25.0% |
| !! | AGATTCTTTCTAGAAATTTC+TGG | + | chr4_2:52840893-52840912 | Msa0606470:intron | 25.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | + | chr4_2:52841025-52841044 | Msa0606470:intron | 25.0% |
| !!! | TAGCATTTCCCATTTTTAAT+TGG | - | chr4_2:52841281-52841300 | None:intergenic | 25.0% |
| !! | ATGGTAATAATTCCCTTTTA+TGG | + | chr4_2:52841412-52841431 | Msa0606470:intron | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | + | chr4_2:52841661-52841680 | Msa0606470:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | chr4_2:52837461-52837480 | Msa0606470:intron | 25.0% |
| ! | TTATATATTCGATGTGATCA+TGG | + | chr4_2:52841936-52841955 | Msa0606470:intron | 25.0% |
| ! | AAAACACTAAGAAGAATACT+TGG | + | chr4_2:52842046-52842065 | Msa0606470:intron | 25.0% |
| ! | TTGGATTTATTTACTATTCC+TGG | + | chr4_2:52842065-52842084 | Msa0606470:intron | 25.0% |
| ! | ATTTATCTTTCACTGTCAAA+AGG | + | chr4_2:52842290-52842309 | Msa0606470:intron | 25.0% |
| ! | ACAATTCTTGAAATGATGAT+TGG | + | chr4_2:52838574-52838593 | Msa0606470:intron | 25.0% |
| !! | ATTGGTTCAAGTATGATATT+GGG | + | chr4_2:52842523-52842542 | Msa0606470:intron | 25.0% |
| ! | TTCATAACACATACAAGAAT+GGG | - | chr4_2:52842666-52842685 | None:intergenic | 25.0% |
| ! | TTTCATAACACATACAAGAA+TGG | - | chr4_2:52842667-52842686 | None:intergenic | 25.0% |
| !! | AACTGTGAATAATTTAGAGT+TGG | + | chr4_2:52842752-52842771 | Msa0606470:intron | 25.0% |
| ! | ATGACATATAATAGATCACA+TGG | + | chr4_2:52842906-52842925 | Msa0606470:intron | 25.0% |
| !! | CTAAATTTTGTAAGATCACA+TGG | + | chr4_2:52843068-52843087 | Msa0606470:intron | 25.0% |
| ! | TAATCCAAATATTACTGAAG+TGG | + | chr4_2:52843266-52843285 | Msa0606470:intron | 25.0% |
| ! | TGTTTAAAGATAATTTGACG+TGG | + | chr4_2:52843351-52843370 | Msa0606470:intron | 25.0% |
| !!! | ATGATTGTCTTATTTTATCC+AGG | - | chr4_2:52843464-52843483 | None:intergenic | 25.0% |
| !!! | AACCTTAGTATTTTTTGTGT+GGG | + | chr4_2:52843821-52843840 | Msa0606470:intron | 25.0% |
| ! | TGTAATTGTAGACAAAACTA+GGG | - | chr4_2:52844111-52844130 | None:intergenic | 25.0% |
| ! | TTGTAATTGTAGACAAAACT+AGG | - | chr4_2:52844112-52844131 | None:intergenic | 25.0% |
| ! | AATATGCCAATGATAGGTTT+TGG | + | chr4_2:52835932-52835951 | Msa0606470:CDS | 30.0% |
| TATAATACTGAAGAACCTCT+AGG | + | chr4_2:52836052-52836071 | Msa0606470:CDS | 30.0% | |
| TGTTCATTACTTCCAAGTTA+TGG | + | chr4_2:52836128-52836147 | Msa0606470:intron | 30.0% | |
| TAATCTTGAATTGGAGTATG+TGG | + | chr4_2:52836308-52836327 | Msa0606470:intron | 30.0% | |
| !! | TATCCTCACCTTTAAAGTTA+TGG | - | chr4_2:52836383-52836402 | None:intergenic | 30.0% |
| ! | ATGTATTTGTGAAGTATCAC+TGG | - | chr4_2:52836696-52836715 | None:intergenic | 30.0% |
| ! | AATTCTTATTTGGGTTTAGG+TGG | + | chr4_2:52836803-52836822 | Msa0606470:intron | 30.0% |
| TAAAATAATCAACTGCACCT+GGG | - | chr4_2:52837000-52837019 | None:intergenic | 30.0% | |
| ATAAAATAATCAACTGCACC+TGG | - | chr4_2:52837001-52837020 | None:intergenic | 30.0% | |
| TAACAGTAATCTCAATACAG+TGG | - | chr4_2:52837242-52837261 | None:intergenic | 30.0% | |
| TATATTATGCAGATAGCACT+AGG | + | chr4_2:52837290-52837309 | Msa0606470:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr4_2:52837341-52837360 | None:intergenic | 30.0% |
| ! | CTCTTATTTAATGTCAGCTA+AGG | - | chr4_2:52837643-52837662 | None:intergenic | 30.0% |
| AATTGTAAATTATGCCGAAG+GGG | + | chr4_2:52837760-52837779 | Msa0606470:intron | 30.0% | |
| !!! | TCAGTATATTTTGGAATGGA+AGG | - | chr4_2:52838058-52838077 | None:intergenic | 30.0% |
| TTAAAAGAACTCTGATGCTT+TGG | - | chr4_2:52838086-52838105 | None:intergenic | 30.0% | |
| TTAAGACAGCTACTGAATAA+AGG | + | chr4_2:52838102-52838121 | Msa0606470:intron | 30.0% | |
| !!! | TGTTTTATTTCAAAACCAGC+CGG | - | chr4_2:52838177-52838196 | None:intergenic | 30.0% |
| ! | ATTGGCTCAAGTATGATATT+GGG | + | chr4_2:52838592-52838611 | Msa0606470:intron | 30.0% |
| ! | TATACTGCAAGATATCCTTT+TGG | + | chr4_2:52838645-52838664 | Msa0606470:intron | 30.0% |
| !! | AGAATGGGTTTTCATTTAAC+CGG | - | chr4_2:52838720-52838739 | None:intergenic | 30.0% |
| ! | GTGTTGTTAAAAGAAGATAG+TGG | + | chr4_2:52838745-52838764 | Msa0606470:intron | 30.0% |
| TATATGTCCTTGTCTACATT+AGG | - | chr4_2:52838960-52838979 | None:intergenic | 30.0% | |
| AGGACATATAATAGATCACT+TGG | + | chr4_2:52838970-52838989 | Msa0606470:intron | 30.0% | |
| TTCTTCCACTACAAGAAATA+AGG | + | chr4_2:52839120-52839139 | Msa0606470:intron | 30.0% | |
| TCTTCCACTACAAGAAATAA+GGG | + | chr4_2:52839121-52839140 | Msa0606470:intron | 30.0% | |
| ! | AAATCCCTTATTTCTTGTAG+TGG | - | chr4_2:52839128-52839147 | None:intergenic | 30.0% |
| CTATTCTACATTTGACTGAT+GGG | - | chr4_2:52839214-52839233 | None:intergenic | 30.0% | |
| ACATACCACATATTTGTAGT+AGG | - | chr4_2:52839239-52839258 | None:intergenic | 30.0% | |
| ! | CACATAGGAAACATTTGTTT+TGG | - | chr4_2:52839286-52839305 | None:intergenic | 30.0% |
| CAAAACAAATGTTTCCTATG+TGG | + | chr4_2:52839284-52839303 | Msa0606470:intron | 30.0% | |
| ! | TTAATAGACGAATGGATTTC+AGG | - | chr4_2:52839368-52839387 | None:intergenic | 30.0% |
| TGTTCCTTCAAAGATGAAAA+AGG | + | chr4_2:52839389-52839408 | Msa0606470:intron | 30.0% | |
| !! | CATACCTTTTTCATCTTTGA+AGG | - | chr4_2:52839396-52839415 | None:intergenic | 30.0% |
| CACAGATAACAATTATGTCA+AGG | + | chr4_2:52839513-52839532 | Msa0606470:intron | 30.0% | |
| TTCATCCATTAGAACATTTC+TGG | + | chr4_2:52839616-52839635 | Msa0606470:intron | 30.0% | |
| TAGAAAGCAACATTGTTTGT+TGG | - | chr4_2:52839648-52839667 | None:intergenic | 30.0% | |
| GTCTTGAACTTGTAAGATAA+TGG | + | chr4_2:52839801-52839820 | Msa0606470:intron | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | + | chr4_2:52836052-52836071 | Msa0606470:CDS | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | + | chr4_2:52840479-52840498 | Msa0606470:intron | 30.0% | |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | + | chr4_2:52840793-52840812 | Msa0606470:intron | 30.0% |
| CAGATATTTCCCTTTACATA+TGG | + | chr4_2:52840853-52840872 | Msa0606470:intron | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | + | chr4_2:52840937-52840956 | Msa0606470:intron | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | + | chr4_2:52841028-52841047 | Msa0606470:intron | 30.0% | |
| TAAAAATGGGAAATGCTAAC+CGG | + | chr4_2:52841283-52841302 | Msa0606470:intron | 30.0% | |
| ACTGGTTAAGGATATGAAAA+AGG | + | chr4_2:52841318-52841337 | Msa0606470:intron | 30.0% | |
| TGGTTAAGCATACCATAAAA+GGG | - | chr4_2:52841427-52841446 | None:intergenic | 30.0% | |
| CTTTCAATGTAACAGTAGTA+AGG | - | chr4_2:52841648-52841667 | None:intergenic | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | chr4_2:52837341-52837360 | None:intergenic | 30.0% |
| ! | CTCTTATTTAATGTCAGCTA+GGG | - | chr4_2:52837643-52837662 | None:intergenic | 30.0% |
| ! | TCTCTTATTTAATGTCAGCT+AGG | - | chr4_2:52837644-52837663 | None:intergenic | 30.0% |
| AATATATGATTCTCTAGTCC+AGG | - | chr4_2:52842086-52842105 | None:intergenic | 30.0% | |
| TACAAAGAGACATATTTGTC+TGG | - | chr4_2:52842169-52842188 | None:intergenic | 30.0% | |
| GAACTGACATAGATTATTTG+AGG | - | chr4_2:52838430-52838449 | None:intergenic | 30.0% | |
| ! | GATTGGTTCAAGTATGATAT+TGG | + | chr4_2:52842522-52842541 | Msa0606470:intron | 30.0% |
| TTGGTCTAAAAATAGTAGAC+TGG | + | chr4_2:52842692-52842711 | Msa0606470:intron | 30.0% | |
| !! | ATATTTCTGGCCTCTATTTA+AGG | - | chr4_2:52843007-52843026 | None:intergenic | 30.0% |
| ATATCTTCAAATTACCTCAG+TGG | + | chr4_2:52843208-52843227 | Msa0606470:intron | 30.0% | |
| ATTCCATTGATAAGAGACAA+AGG | - | chr4_2:52843522-52843541 | None:intergenic | 30.0% | |
| !!! | GAACCTTAGTATTTTTTGTG+TGG | + | chr4_2:52843820-52843839 | Msa0606470:intron | 30.0% |
| ! | CTATTTTCTAATTAGTTCGG+TGG | + | chr4_2:52844143-52844162 | Msa0606470:intron | 30.0% |
| TATAATACTGAAGAACCTCT+AGG | + | chr4_2:52836052-52836071 | Msa0606470:CDS | 30.0% | |
| CAGAGGTGATACTAAATTCA+GGG | + | chr4_2:52835906-52835925 | Msa0606470:CDS | 35.0% | |
| GGGAAAAATATGCCAATGAT+AGG | + | chr4_2:52835926-52835945 | Msa0606470:CDS | 35.0% | |
| GATGTTCCAAAACCTATCAT+TGG | - | chr4_2:52835941-52835960 | None:intergenic | 35.0% | |
| AATGGCATCAACCAAAATTG+AGG | - | chr4_2:52835996-52836015 | None:intergenic | 35.0% | |
| ! | TTGGTTGATGCCATTGAAAT+AGG | + | chr4_2:52836001-52836020 | Msa0606470:CDS | 35.0% |
| ! | GTTCATCACGATTTTTAACG+AGG | - | chr4_2:52836108-52836127 | None:intergenic | 35.0% |
| AAATTATGCTTGCTTGAGAG+TGG | - | chr4_2:52836197-52836216 | None:intergenic | 35.0% | |
| TGGATCTCTATTTGATTCAC+TGG | + | chr4_2:52836328-52836347 | Msa0606470:intron | 35.0% | |
| GTTGAAGGCCATAACTTTAA+AGG | + | chr4_2:52836372-52836391 | Msa0606470:intron | 35.0% | |
| TGACACCAATAGACTTTGAT+AGG | - | chr4_2:52836464-52836483 | None:intergenic | 35.0% | |
| !! | TCTATTGGTGTCAGTAACTT+TGG | + | chr4_2:52836471-52836490 | Msa0606470:intron | 35.0% |
| ! | TTTGGCACTTTCTAAGAGTA+TGG | - | chr4_2:52836511-52836530 | None:intergenic | 35.0% |
| ! | ATTAACAGCAGGAGAGATTT+TGG | - | chr4_2:52836529-52836548 | None:intergenic | 35.0% |
| TCATATACCTGATTAACAGC+AGG | - | chr4_2:52836540-52836559 | None:intergenic | 35.0% | |
| CTGCATCAGTTACTTCAAAA+TGG | + | chr4_2:52836587-52836606 | Msa0606470:intron | 35.0% | |
| ! | ACAATCTAAGGTTCATGATG+TGG | - | chr4_2:52837165-52837184 | None:intergenic | 35.0% |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr4_2:52837342-52837361 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr4_2:52837340-52837359 | Msa0606470:intron | 35.0% | |
| ! | TAATGGACCTTACAAGTCAT+TGG | + | chr4_2:52837478-52837497 | Msa0606470:intron | 35.0% |
| !! | CTTGTTTTCTGCCACAAAAA+TGG | - | chr4_2:52838001-52838020 | None:intergenic | 35.0% |
| ! | CATTTTTGTGGCAGAAAACA+AGG | + | chr4_2:52837999-52838018 | Msa0606470:intron | 35.0% |
| GTAATTGATCAATGAACCAG+TGG | - | chr4_2:52838036-52838055 | None:intergenic | 35.0% | |
| !!! | TGGATCAGTAGTAGTTTTGT+TGG | - | chr4_2:52838139-52838158 | None:intergenic | 35.0% |
| ACTACTACTGATCCAAAAAC+AGG | + | chr4_2:52838144-52838163 | Msa0606470:intron | 35.0% | |
| TTGAGACAAATTTGTACAGC+AGG | - | chr4_2:52838413-52838432 | None:intergenic | 35.0% | |
| ! | AAGAAAACGTTTTCTCTGCA+AGG | + | chr4_2:52838496-52838515 | Msa0606470:intron | 35.0% |
| ATTCAGATATGACATCCAAC+TGG | - | chr4_2:52838535-52838554 | None:intergenic | 35.0% | |
| GTCATATCTGAATTGTTCCT+CGG | + | chr4_2:52838542-52838561 | Msa0606470:intron | 35.0% | |
| AGAATTGTTGAATTAAGCCG+AGG | - | chr4_2:52838562-52838581 | None:intergenic | 35.0% | |
| ! | GATTGGCTCAAGTATGATAT+TGG | + | chr4_2:52838591-52838610 | Msa0606470:intron | 35.0% |
| GGATATCTTGCAGTATATGT+TGG | - | chr4_2:52838642-52838661 | None:intergenic | 35.0% | |
| TTTAACCGGTATCATCAGAA+GGG | - | chr4_2:52838706-52838725 | None:intergenic | 35.0% | |
| ATTTAACCGGTATCATCAGA+AGG | - | chr4_2:52838707-52838726 | None:intergenic | 35.0% | |
| GTGGTCTAAAAATGCTATAC+TGG | + | chr4_2:52838764-52838783 | Msa0606470:intron | 35.0% | |
| ! | GGTTGTGAATGATTTTGTGT+TGG | + | chr4_2:52838815-52838834 | Msa0606470:intron | 35.0% |
| AAGGATATGTACCAAGCATT+CGG | + | chr4_2:52838876-52838895 | Msa0606470:intron | 35.0% | |
| ACCATGAGATTTGAGTCATT+GGG | + | chr4_2:52838924-52838943 | Msa0606470:intron | 35.0% | |
| ! | CTTGTCTACATTAGGTTGTA+TGG | - | chr4_2:52838952-52838971 | None:intergenic | 35.0% |
| CATACAACCTAATGTAGACA+AGG | + | chr4_2:52838950-52838969 | Msa0606470:intron | 35.0% | |
| AGTGGAAGAAAAAGATGATG+AGG | - | chr4_2:52839110-52839129 | None:intergenic | 35.0% | |
| GATTTAGCGTCAGTCATTTA+GGG | + | chr4_2:52839143-52839162 | Msa0606470:intron | 35.0% | |
| !! | ATAGCGCATAATTTGTTGCT+TGG | - | chr4_2:52839189-52839208 | None:intergenic | 35.0% |
| GCTATTCTACATTTGACTGA+TGG | - | chr4_2:52839215-52839234 | None:intergenic | 35.0% | |
| !!! | TTGGCTCGAAACCAATTTTT+TGG | - | chr4_2:52839267-52839286 | None:intergenic | 35.0% |
| GGTTAAAAACTTCACCACAT+AGG | - | chr4_2:52839301-52839320 | None:intergenic | 35.0% | |
| AGGAACAGTTAATAGACGAA+TGG | - | chr4_2:52839376-52839395 | None:intergenic | 35.0% | |
| TGTTGCCAGAAATGTTCTAA+TGG | - | chr4_2:52839624-52839643 | None:intergenic | 35.0% | |
| TCACTATCTTGCTTTGTCAT+AGG | + | chr4_2:52839716-52839735 | Msa0606470:intron | 35.0% | |
| CACTATCTTGCTTTGTCATA+GGG | + | chr4_2:52839717-52839736 | Msa0606470:intron | 35.0% | |
| ACTATCTTGCTTTGTCATAG+GGG | + | chr4_2:52839718-52839737 | Msa0606470:intron | 35.0% | |
| ! | AAGATGCCAATGATAGGTTT+TGG | + | chr4_2:52840118-52840137 | Msa0606470:CDS | 35.0% |
| GATGTTCCAAAACCTATCAT+TGG | - | chr4_2:52835941-52835960 | None:intergenic | 35.0% | |
| AATGGCATCAACCAAAATTG+AGG | - | chr4_2:52835996-52836015 | None:intergenic | 35.0% | |
| ! | TTGGTTGATGCCATTGAAAT+AGG | + | chr4_2:52836001-52836020 | Msa0606470:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | - | chr4_2:52840264-52840283 | None:intergenic | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | + | chr4_2:52840268-52840287 | Msa0606470:CDS | 35.0% |
| ! | GTTCATCGCGATTTTTAATG+AGG | - | chr4_2:52840294-52840313 | None:intergenic | 35.0% |
| TGTTCGTTACTTCCAAGTTA+TGG | + | chr4_2:52840314-52840333 | Msa0606470:intron | 35.0% | |
| AGAGAAATATGCTTGCTTGA+GGG | - | chr4_2:52840386-52840405 | None:intergenic | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | - | chr4_2:52840387-52840406 | None:intergenic | 35.0% | |
| AAAACTGAAGTTGGACTATG+TGG | + | chr4_2:52840488-52840507 | Msa0606470:intron | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | + | chr4_2:52840517-52840536 | Msa0606470:intron | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | + | chr4_2:52840537-52840556 | Msa0606470:intron | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | + | chr4_2:52840557-52840576 | Msa0606470:intron | 35.0% | |
| TAACACCAATAGACTTTGCT+AGG | - | chr4_2:52840644-52840663 | None:intergenic | 35.0% | |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | chr4_2:52840651-52840670 | Msa0606470:intron | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | - | chr4_2:52840709-52840728 | None:intergenic | 35.0% |
| TATCTGACGTCTATGAGTAT+CGG | - | chr4_2:52840839-52840858 | None:intergenic | 35.0% | |
| ! | GGAGGATACAAACTAAGTTT+TGG | + | chr4_2:52841134-52841153 | Msa0606470:CDS | 35.0% |
| ATTAAATTCTCCATCACTGC+AGG | - | chr4_2:52841164-52841183 | None:intergenic | 35.0% | |
| ! | TAGAAAGAAAAGTGTAGCCA+AGG | + | chr4_2:52841205-52841224 | Msa0606470:CDS | 35.0% |
| CTGGTTAAGCATACCATAAA+AGG | - | chr4_2:52841428-52841447 | None:intergenic | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | chr4_2:52841538-52841557 | Msa0606470:intron | 35.0% | |
| ! | TTTAGACTTGGTCATAGAAG+TGG | + | chr4_2:52837134-52837153 | Msa0606470:intron | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | - | chr4_2:52841582-52841601 | None:intergenic | 35.0% |
| TAAGATGGATATACCAGCAA+GGG | + | chr4_2:52841706-52841725 | Msa0606470:intron | 35.0% | |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | chr4_2:52837342-52837361 | None:intergenic | 35.0% |
| CATTGTGAAAAGCTTCAACA+AGG | + | chr4_2:52837340-52837359 | Msa0606470:intron | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | + | chr4_2:52841742-52841761 | Msa0606470:intron | 35.0% | |
| ! | TAATGGACCTTACAAAACCT+TGG | + | chr4_2:52841875-52841894 | Msa0606470:intron | 35.0% |
| ACAACTGAGTGAGATGATTA+TGG | - | chr4_2:52842264-52842283 | None:intergenic | 35.0% | |
| TTGAGGCAAAATTACACATG+AGG | - | chr4_2:52842343-52842362 | None:intergenic | 35.0% | |
| GTCATATCCAAATTGTTCCT+CGG | + | chr4_2:52842473-52842492 | Msa0606470:intron | 35.0% | |
| GGATATCTTGCAGTATATGT+TGG | - | chr4_2:52838642-52838661 | None:intergenic | 35.0% | |
| TATACTGCAAGATATCCCTT+TGG | + | chr4_2:52842576-52842595 | Msa0606470:intron | 35.0% | |
| GCAAACCAAACATCTTCAAA+AGG | - | chr4_2:52842612-52842631 | None:intergenic | 35.0% | |
| TTTAACCGGTATCATCAGAA+GGG | - | chr4_2:52838706-52838725 | None:intergenic | 35.0% | |
| !! | AGAATGGGTTTTCGTTTAAC+CGG | - | chr4_2:52842651-52842670 | None:intergenic | 35.0% |
| GCAACTTGAATGATCAATGA+AGG | + | chr4_2:52842833-52842852 | Msa0606470:intron | 35.0% | |
| ACTTGAATGATCAATGAAGG+AGG | + | chr4_2:52842836-52842855 | Msa0606470:intron | 35.0% | |
| ATTGTCTCCCTTAAGTTCTA+TGG | - | chr4_2:52842888-52842907 | None:intergenic | 35.0% | |
| CCAACCACTTCAGTAATATT+TGG | - | chr4_2:52843273-52843292 | None:intergenic | 35.0% | |
| CCAAATATTACTGAAGTGGT+TGG | + | chr4_2:52843270-52843289 | Msa0606470:intron | 35.0% | |
| AATTCCAAGAGCTAATGTTC+TGG | + | chr4_2:52843327-52843346 | Msa0606470:intron | 35.0% | |
| TACTTCAGACTTGAAAACTC+AGG | - | chr4_2:52843439-52843458 | None:intergenic | 35.0% | |
| AATACCATGTGACATCTCAT+TGG | + | chr4_2:52843496-52843515 | Msa0606470:intron | 35.0% | |
| GACCCACACAAAAAATACTA+AGG | - | chr4_2:52843826-52843845 | None:intergenic | 35.0% | |
| ! | AAGGTACCTCATGTATGATT+GGG | - | chr4_2:52843938-52843957 | None:intergenic | 35.0% |
| ATAGATAAACCATGCAGCAA+AGG | - | chr4_2:52844063-52844082 | None:intergenic | 35.0% | |
| ACTAGGGAGTAGAAAAGATA+CGG | - | chr4_2:52844095-52844114 | None:intergenic | 35.0% | |
| TATCTGCTGTACAATGAATG+TGG | - | chr4_2:52844223-52844242 | None:intergenic | 35.0% | |
| ! | GTCTAAATGATGTTTTACGG+TGG | + | chr4_2:52844346-52844365 | Msa0606470:intron | 35.0% |
| ! | CTAAATCTTTTGACACAGCT+TGG | - | chr4_2:52844442-52844461 | None:intergenic | 35.0% |
| ! | GTGTCAAAAGATTTAGAGCT+AGG | + | chr4_2:52844446-52844465 | Msa0606470:CDS | 35.0% |
| AACATCAGTACACGATAACT+TGG | - | chr4_2:52844507-52844526 | None:intergenic | 35.0% | |
| GGAAACAAACAAAGTTCCAG+AGG | + | chr4_2:52835889-52835908 | Msa0606470:CDS | 40.0% | |
| CCTGAATTTAGTATCACCTC+TGG | - | chr4_2:52835908-52835927 | None:intergenic | 40.0% | |
| CCAGAGGTGATACTAAATTC+AGG | + | chr4_2:52835905-52835924 | Msa0606470:CDS | 40.0% | |
| ! | TGAAGTCCTCACCTCAATTT+TGG | + | chr4_2:52835982-52836001 | Msa0606470:CDS | 40.0% |
| CATCAACCAAAATTGAGGTG+AGG | - | chr4_2:52835991-52836010 | None:intergenic | 40.0% | |
| ATGCCATTGAAATAGGCTAC+AGG | + | chr4_2:52836008-52836027 | Msa0606470:CDS | 40.0% | |
| ATGCCTGTAGCCTATTTCAA+TGG | - | chr4_2:52836014-52836033 | None:intergenic | 40.0% | |
| ! | CTAAAGCTTTTGACACAGCT+TGG | - | chr4_2:52836078-52836097 | None:intergenic | 40.0% |
| !! | GTGTCAAAAGCTTTAGAGCT+AGG | + | chr4_2:52836082-52836101 | Msa0606470:CDS | 40.0% |
| AGCATCAGTACACCATAACT+TGG | - | chr4_2:52836143-52836162 | None:intergenic | 40.0% | |
| ATTTGATTCACTGGCCAGTA+AGG | + | chr4_2:52836337-52836356 | Msa0606470:intron | 40.0% | |
| !! | ACGTCTTGTTTCAACCTTAC+TGG | - | chr4_2:52836354-52836373 | None:intergenic | 40.0% |
| AGGTTGAAACAAGACGTTGA+AGG | + | chr4_2:52836357-52836376 | Msa0606470:intron | 40.0% | |
| ! | AGGCCATAACTTTAAAGGTG+AGG | + | chr4_2:52836377-52836396 | Msa0606470:intron | 40.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr4_2:52836419-52836438 | Msa0606470:intron | 40.0% | |
| TTGGGCCTATCAAAGTCTAT+TGG | + | chr4_2:52836456-52836475 | Msa0606470:intron | 40.0% | |
| AATCTCTCCTGCTGTTAATC+AGG | + | chr4_2:52836530-52836549 | Msa0606470:intron | 40.0% | |
| ATGACAACTGCATGCTTAGT+TGG | - | chr4_2:52836735-52836754 | None:intergenic | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | chr4_2:52836858-52836877 | Msa0606470:CDS | 40.0% | |
| ! | TAGGAGGGTACAAACTAAGT+TGG | + | chr4_2:52836907-52836926 | Msa0606470:CDS | 40.0% |
| ! | AGGAGGGTACAAACTAAGTT+GGG | + | chr4_2:52836908-52836927 | Msa0606470:CDS | 40.0% |
| GATTCTGCTCAAAATTGCTG+AGG | + | chr4_2:52836956-52836975 | Msa0606470:CDS | 40.0% | |
| ! | TAGAAAGAAGAGTATAGCCC+AGG | + | chr4_2:52836980-52836999 | Msa0606470:CDS | 40.0% |
| ! | CCAAGTCTAAAGTTTGACCA+TGG | - | chr4_2:52837125-52837144 | None:intergenic | 40.0% |
| CCATGGTCAAACTTTAGACT+TGG | + | chr4_2:52837122-52837141 | Msa0606470:intron | 40.0% | |
| TTATGCAGATAGCACTAGGA+TGG | + | chr4_2:52837294-52837313 | Msa0606470:intron | 40.0% | |
| TAGGATGGATATACCAGCAA+GGG | + | chr4_2:52837309-52837328 | Msa0606470:intron | 40.0% | |
| TGAAAAGCTTCAACAAGGAG+AGG | + | chr4_2:52837345-52837364 | Msa0606470:intron | 40.0% | |
| ! | AGCTCTTCCAATGACTTGTA+AGG | - | chr4_2:52837488-52837507 | None:intergenic | 40.0% |
| TCCTGAACTAGAGAATCACA+TGG | + | chr4_2:52837691-52837710 | Msa0606470:intron | 40.0% | |
| ! | TTTTGTGGCAGAAAACAAGG+TGG | + | chr4_2:52838002-52838021 | Msa0606470:intron | 40.0% |
| TCCAAAAACAGGATAGACTC+CGG | + | chr4_2:52838155-52838174 | Msa0606470:intron | 40.0% | |
| GTTCCTTGTGAATATGGAAC+AGG | + | chr4_2:52838228-52838247 | Msa0606470:intron | 40.0% | |
| TCTCCTGTTCCATATTCACA+AGG | - | chr4_2:52838234-52838253 | None:intergenic | 40.0% | |
| ATGTCAGTTCCTTCTTCTGA+AGG | + | chr4_2:52838440-52838459 | Msa0606470:intron | 40.0% | |
| TGTCAGTTCCTTCTTCTGAA+GGG | + | chr4_2:52838441-52838460 | Msa0606470:intron | 40.0% | |
| ATGTTGGAGAGGAAATGAAG+AGG | - | chr4_2:52838626-52838645 | None:intergenic | 40.0% | |
| TCTTGCAGTATATGTTGGAG+AGG | - | chr4_2:52838637-52838656 | None:intergenic | 40.0% | |
| ! | AAAAGTGTGGATGTGCCAAA+AGG | - | chr4_2:52838663-52838682 | None:intergenic | 40.0% |
| ! | TTTGGCACATCCACACTTTT+TGG | + | chr4_2:52838663-52838682 | Msa0606470:intron | 40.0% |
| CCAAACATCTCCAAAAAGTG+TGG | - | chr4_2:52838676-52838695 | None:intergenic | 40.0% | |
| !! | CCACACTTTTTGGAGATGTT+TGG | + | chr4_2:52838673-52838692 | Msa0606470:intron | 40.0% |
| GCAACTTGAATGATCAGTGA+AGG | + | chr4_2:52838898-52838917 | Msa0606470:intron | 40.0% | |
| ACTTGAATGATCAGTGAAGG+AGG | + | chr4_2:52838901-52838920 | Msa0606470:intron | 40.0% | |
| GACCATGAGATTTGAGTCAT+TGG | + | chr4_2:52838923-52838942 | Msa0606470:intron | 40.0% | |
| TCCCAATGACTCAAATCTCA+TGG | - | chr4_2:52838928-52838947 | None:intergenic | 40.0% | |
| ! | ATATTGCTGGCCTCTACTTA+AGG | - | chr4_2:52839071-52839090 | None:intergenic | 40.0% |
| GGATTTAGCGTCAGTCATTT+AGG | + | chr4_2:52839142-52839161 | Msa0606470:intron | 40.0% | |
| TAGCGCCTACTACAAATATG+TGG | + | chr4_2:52839231-52839250 | Msa0606470:intron | 40.0% | |
| ! | AATGGATAGCTAGGGCTTTT+CGG | - | chr4_2:52839342-52839361 | None:intergenic | 40.0% |
| TCAGGTGAAATGGATAGCTA+GGG | - | chr4_2:52839350-52839369 | None:intergenic | 40.0% | |
| TTCAGGTGAAATGGATAGCT+AGG | - | chr4_2:52839351-52839370 | None:intergenic | 40.0% | |
| ! | CGAATGGATTTCAGGTGAAA+TGG | - | chr4_2:52839360-52839379 | None:intergenic | 40.0% |
| CTGGTCAAAGGATGAGATAA+AGG | + | chr4_2:52839443-52839462 | Msa0606470:intron | 40.0% | |
| ! | GATCTTCCTCTTTTCAGTCT+CGG | - | chr4_2:52839473-52839492 | None:intergenic | 40.0% |
| CAGAGGTGATGCTAAATTCA+GGG | + | chr4_2:52840092-52840111 | Msa0606470:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | chr4_2:52840112-52840131 | Msa0606470:CDS | 40.0% | |
| ! | TGATGTCCTCACCTCAATTT+TGG | + | chr4_2:52840168-52840187 | Msa0606470:CDS | 40.0% |
| CATCAACCAAAATTGAGGTG+AGG | - | chr4_2:52835991-52836010 | None:intergenic | 40.0% | |
| ATGCCATTGAAATAGGCTAC+AGG | + | chr4_2:52836008-52836027 | Msa0606470:CDS | 40.0% | |
| ATGCCTGTAGCCTATTTCAA+TGG | - | chr4_2:52836014-52836033 | None:intergenic | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | chr4_2:52836143-52836162 | None:intergenic | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | - | chr4_2:52840534-52840553 | None:intergenic | 40.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | chr4_2:52836419-52836438 | Msa0606470:intron | 40.0% | |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | - | chr4_2:52840691-52840710 | None:intergenic | 40.0% |
| AATCTCTCCTGCAGTTAATC+AGG | + | chr4_2:52840710-52840729 | Msa0606470:intron | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | - | chr4_2:52840720-52840739 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | + | chr4_2:52841045-52841064 | Msa0606470:intron | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | + | chr4_2:52841052-52841071 | Msa0606470:CDS | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | + | chr4_2:52841053-52841072 | Msa0606470:CDS | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | chr4_2:52836858-52836877 | Msa0606470:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | + | chr4_2:52841102-52841121 | Msa0606470:CDS | 40.0% | |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | chr4_2:52841131-52841150 | None:intergenic | 40.0% |
| TAAGATAATGAGCTGCACCT+TGG | - | chr4_2:52841225-52841244 | None:intergenic | 40.0% | |
| !! | TTTTAATGGGTCCTGCTAAC+CGG | - | chr4_2:52841464-52841483 | None:intergenic | 40.0% |
| TCATGCAGATAGCACTAAGA+TGG | + | chr4_2:52841691-52841710 | Msa0606470:intron | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | + | chr4_2:52841705-52841724 | Msa0606470:intron | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | chr4_2:52841707-52841726 | Msa0606470:intron | 40.0% | |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | chr4_2:52841885-52841904 | None:intergenic | 40.0% |
| GTGCTAACATCTTCAGAAGA+AGG | - | chr4_2:52842382-52842401 | None:intergenic | 40.0% | |
| AAGAAAACGTCTTCTCTGCA+AGG | + | chr4_2:52842426-52842445 | Msa0606470:intron | 40.0% | |
| AATCAAGCCGAGGAACAATT+TGG | - | chr4_2:52842483-52842502 | None:intergenic | 40.0% | |
| AGAATTGTTGAATCAAGCCG+AGG | - | chr4_2:52842493-52842512 | None:intergenic | 40.0% | |
| CTTGCAGTATATGTTGGAGA+GGG | - | chr4_2:52838636-52838655 | None:intergenic | 40.0% | |
| TCTTGCAGTATATGTTGGAG+AGG | - | chr4_2:52838637-52838656 | None:intergenic | 40.0% | |
| GTTTAACCGGTATCATCAGA+AGG | - | chr4_2:52842638-52842657 | None:intergenic | 40.0% | |
| ! | AGTTGGTTCTTAATGCTTGC+AGG | + | chr4_2:52842769-52842788 | Msa0606470:intron | 40.0% |
| ACCATGAGATTGGAAGTCAT+TGG | + | chr4_2:52842859-52842878 | Msa0606470:intron | 40.0% | |
| CCATGAGATTGGAAGTCATT+GGG | + | chr4_2:52842860-52842879 | Msa0606470:intron | 40.0% | |
| ATTGGGAGCCATAGAACTTA+AGG | + | chr4_2:52842877-52842896 | Msa0606470:intron | 40.0% | |
| TTGGGAGCCATAGAACTTAA+GGG | + | chr4_2:52842878-52842897 | Msa0606470:intron | 40.0% | |
| ! | TTTCTGGCCTCTATTTAAGG+TGG | - | chr4_2:52843004-52843023 | None:intergenic | 40.0% |
| !! | CTTTTCAATTTTGGCCACTG+AGG | - | chr4_2:52843225-52843244 | None:intergenic | 40.0% |
| ! | ACAACCAGAACATTAGCTCT+TGG | - | chr4_2:52843334-52843353 | None:intergenic | 40.0% |
| ! | TTTCAAGTCTGAAGTACTCC+TGG | + | chr4_2:52843443-52843462 | Msa0606470:intron | 40.0% |
| TGGCCTTTGTCTCTTATCAA+TGG | + | chr4_2:52843516-52843535 | Msa0606470:intron | 40.0% | |
| AGACCTTCCAAAATATGAGC+AGG | + | chr4_2:52843714-52843733 | Msa0606470:intron | 40.0% | |
| GACCTTCCAAAATATGAGCA+GGG | + | chr4_2:52843715-52843734 | Msa0606470:intron | 40.0% | |
| !! | AACCCTGCTCATATTTTGGA+AGG | - | chr4_2:52843720-52843739 | None:intergenic | 40.0% |
| ! | AAGCAACCCTGCTCATATTT+TGG | - | chr4_2:52843724-52843743 | None:intergenic | 40.0% |
| AAAATATGAGCAGGGTTGCT+TGG | + | chr4_2:52843723-52843742 | Msa0606470:intron | 40.0% | |
| CTCATGTATGATTGGGACTT+CGG | - | chr4_2:52843931-52843950 | None:intergenic | 40.0% | |
| !! | GAAGGTACCTCATGTATGAT+TGG | - | chr4_2:52843939-52843958 | None:intergenic | 40.0% |
| ATAAACCATGCAGCAAAGGT+AGG | - | chr4_2:52844059-52844078 | None:intergenic | 40.0% | |
| GAGTAGAAAAGATACGGTCA+TGG | - | chr4_2:52844089-52844108 | None:intergenic | 40.0% | |
| CTAGTCAGAGGATGAGATAA+AGG | + | chr4_2:52844281-52844300 | Msa0606470:intron | 40.0% | |
| GATCTTCCTCTTATCAGTCT+CGG | - | chr4_2:52844311-52844330 | None:intergenic | 40.0% | |
| TGCATGCTTGTAAGAACTAC+AGG | + | chr4_2:52844372-52844391 | Msa0606470:CDS | 40.0% | |
| GCATGCTTGTAAGAACTACA+GGG | + | chr4_2:52844373-52844392 | Msa0606470:CDS | 40.0% | |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | chr4_2:52844472-52844491 | None:intergenic | 40.0% |
| !!! | TGAGAATGGTTTTGAGAGCT+GGG | - | chr4_2:52844547-52844566 | None:intergenic | 40.0% |
| !!! | TTGAGAATGGTTTTGAGAGC+TGG | - | chr4_2:52844548-52844567 | None:intergenic | 40.0% |
| ATTGAGGTGAGGACTTCATG+TGG | - | chr4_2:52835980-52835999 | None:intergenic | 45.0% | |
| !! | TTTTGAGAGCTGGGAGAACA+AGG | - | chr4_2:52836174-52836193 | None:intergenic | 45.0% |
| !!! | TGAGAGTGGTTTTGAGAGCT+GGG | - | chr4_2:52836183-52836202 | None:intergenic | 45.0% |
| !!! | TTGAGAGTGGTTTTGAGAGC+TGG | - | chr4_2:52836184-52836203 | None:intergenic | 45.0% |
| AGGTGGAAATGAACCCATCA+TGG | + | chr4_2:52836820-52836839 | Msa0606470:intron | 45.0% | |
| AATGAACCCATCATGGCATC+AGG | + | chr4_2:52836827-52836846 | Msa0606470:CDS | 45.0% | |
| ATGAACCCATCATGGCATCA+GGG | + | chr4_2:52836828-52836847 | Msa0606470:CDS | 45.0% | |
| AAGGAATCCATGTGAGTGCA+TGG | + | chr4_2:52836877-52836896 | Msa0606470:CDS | 45.0% | |
| !! | CTTAGTTTGTACCCTCCTAG+TGG | - | chr4_2:52836906-52836925 | None:intergenic | 45.0% |
| ! | GGAGGGTACAAACTAAGTTG+GGG | + | chr4_2:52836909-52836928 | Msa0606470:CDS | 45.0% |
| ATCGAATTCTCCATCACTGC+AGG | - | chr4_2:52836939-52836958 | None:intergenic | 45.0% | |
| CTAGGATGGATATACCAGCA+AGG | + | chr4_2:52837308-52837327 | Msa0606470:intron | 45.0% | |
| AGGATGGATATACCAGCAAG+GGG | + | chr4_2:52837310-52837329 | Msa0606470:intron | 45.0% | |
| TCCTCAATGCAGACTGCTAA+AGG | + | chr4_2:52837436-52837455 | Msa0606470:intron | 45.0% | |
| ACAAGTCATTGGAAGAGCTG+TGG | + | chr4_2:52837489-52837508 | Msa0606470:intron | 45.0% | |
| CAAGTCATTGGAAGAGCTGT+GGG | + | chr4_2:52837490-52837509 | Msa0606470:intron | 45.0% | |
| ! | GCCATGTGATTCTCTAGTTC+AGG | - | chr4_2:52837695-52837714 | None:intergenic | 45.0% |
| TCGTAGAGATTGATCCCCTT+CGG | - | chr4_2:52837777-52837796 | None:intergenic | 45.0% | |
| GATCAATGAACCAGTGGAGT+AGG | - | chr4_2:52838030-52838049 | None:intergenic | 45.0% | |
| ! | GTCAGTTCCTTCTTCTGAAG+GGG | + | chr4_2:52838442-52838461 | Msa0606470:intron | 45.0% |
| CAGATATGACATCCAACTGG+TGG | - | chr4_2:52838532-52838551 | None:intergenic | 45.0% | |
| !! | CATTCAAGTTGCCGAATGCT+TGG | - | chr4_2:52838890-52838909 | None:intergenic | 45.0% |
| ! | TAGCGTCAGTCATTTAGGGT+CGG | + | chr4_2:52839147-52839166 | Msa0606470:intron | 45.0% |
| ! | TTTGTTGCTTGGCGTTAGTC+AGG | - | chr4_2:52839178-52839197 | None:intergenic | 45.0% |
| GTACCATCTATTGTCTGTGC+TGG | + | chr4_2:52839424-52839443 | Msa0606470:intron | 45.0% | |
| TGACCAGCACAGACAATAGA+TGG | - | chr4_2:52839430-52839449 | None:intergenic | 45.0% | |
| ! | CTATTGTCTGTGCTGGTCAA+AGG | + | chr4_2:52839431-52839450 | Msa0606470:intron | 45.0% |
| AGACACACACACACATGTGT+AGG | + | chr4_2:52839902-52839921 | Msa0606470:intron | 45.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | chr4_2:52840075-52840094 | Msa0606470:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | - | chr4_2:52840094-52840113 | None:intergenic | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | + | chr4_2:52840091-52840110 | Msa0606470:CDS | 45.0% | |
| ATTGAGGTGAGGACATCATG+TGG | - | chr4_2:52840166-52840185 | None:intergenic | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | - | chr4_2:52840360-52840379 | None:intergenic | 45.0% |
| GAAATATGCTTGCTTGAGGG+TGG | - | chr4_2:52840383-52840402 | None:intergenic | 45.0% | |
| TTGGGCCTAGCAAAGTCTAT+TGG | + | chr4_2:52840636-52840655 | Msa0606470:intron | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | + | chr4_2:52841054-52841073 | Msa0606470:CDS | 45.0% | |
| !!! | TTTTGGTTCACCTGCAGTGA+TGG | + | chr4_2:52841151-52841170 | Msa0606470:CDS | 45.0% |
| TCCTCAATGCAGACTGCTAA+AGG | + | chr4_2:52837436-52837455 | Msa0606470:intron | 45.0% | |
| ACCTTTAGCAGTCTGCATTG+AGG | - | chr4_2:52841837-52841856 | None:intergenic | 45.0% | |
| ACAAAACCTTGGAAGAGCTG+TGG | + | chr4_2:52841886-52841905 | Msa0606470:intron | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | chr4_2:52841887-52841906 | Msa0606470:intron | 45.0% | |
| TTTGGATATGACCATCCAGC+AGG | - | chr4_2:52842465-52842484 | None:intergenic | 45.0% | |
| ATGTTGGAGAGGGAATGAAG+AGG | - | chr4_2:52842557-52842576 | None:intergenic | 45.0% | |
| CCAAACATCTTCAAAAGGCG+TGG | - | chr4_2:52842607-52842626 | None:intergenic | 45.0% | |
| !! | CCACGCCTTTTGAAGATGTT+TGG | + | chr4_2:52842604-52842623 | Msa0606470:intron | 45.0% |
| ATGAAGGAGGACCATGAGAT+TGG | + | chr4_2:52842849-52842868 | Msa0606470:intron | 45.0% | |
| CCCAATGACTTCCAATCTCA+TGG | - | chr4_2:52842863-52842882 | None:intergenic | 45.0% | |
| !! | CTCTATTTAAGGTGGTGGGT+GGG | - | chr4_2:52842996-52843015 | None:intergenic | 45.0% |
| ! | TGGCCTCTATTTAAGGTGGT+GGG | - | chr4_2:52843000-52843019 | None:intergenic | 45.0% |
| TTCAGTGCTAGTTGTGCTGA+AGG | + | chr4_2:52843147-52843166 | Msa0606470:intron | 45.0% | |
| ! | TTGGCAACCGACTTAACTCT+AGG | + | chr4_2:52843289-52843308 | Msa0606470:intron | 45.0% |
| CTTGGAATTCGTAGACATGG+CGG | - | chr4_2:52843316-52843335 | None:intergenic | 45.0% | |
| GCTCTTGGAATTCGTAGACA+TGG | - | chr4_2:52843319-52843338 | None:intergenic | 45.0% | |
| AGCTTGTCTGCTAGAAGAGT+AGG | + | chr4_2:52843391-52843410 | Msa0606470:intron | 45.0% | |
| AAGGCCAATGAGATGTCACA+TGG | - | chr4_2:52843503-52843522 | None:intergenic | 45.0% | |
| !! | TTTTGGAAGGTCTGACTGCA+AGG | - | chr4_2:52843707-52843726 | None:intergenic | 45.0% |
| AGTACACATGAATCCCAGCA+AGG | + | chr4_2:52843794-52843813 | Msa0606470:intron | 45.0% | |
| GTACACATGAATCCCAGCAA+GGG | + | chr4_2:52843795-52843814 | Msa0606470:intron | 45.0% | |
| CGAAGTCCCAATCATACATG+AGG | + | chr4_2:52843929-52843948 | Msa0606470:intron | 45.0% | |
| ! | ATGAGGTACCTTCCCTTCAT+AGG | + | chr4_2:52843946-52843965 | Msa0606470:intron | 45.0% |
| ATTGTGCACCTGCCTATGAA+GGG | - | chr4_2:52843961-52843980 | None:intergenic | 45.0% | |
| TATTGTGCACCTGCCTATGA+AGG | - | chr4_2:52843962-52843981 | None:intergenic | 45.0% | |
| ! | GTTTTCCTACCTTTGCTGCA+TGG | + | chr4_2:52844051-52844070 | Msa0606470:intron | 45.0% |
| !! | TTTTGAGAGCTGGGAGAACA+AGG | - | chr4_2:52836174-52836193 | None:intergenic | 45.0% |
| !! | AAAGAATTAAAATAAATTAT+TGG | - | chr4_2:52836661-52836680 | None:intergenic | 5.0% |
| !!! | ATAATTTATTTTAATTCTTT+TGG | + | chr4_2:52836661-52836680 | Msa0606470:intron | 5.0% |
| !! | AATATAAATTCATTAAAAAT+TGG | + | chr4_2:52838316-52838335 | Msa0606470:intron | 5.0% |
| !!! | ATTAAAATAATTAGTTTTTT+CGG | - | chr4_2:52843869-52843888 | None:intergenic | 5.0% |
| ! | AGGACTTCATGTGGTGGAGA+GGG | - | chr4_2:52835971-52835990 | None:intergenic | 50.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_2:52836070-52836089 | None:intergenic | 50.0% | |
| TGAACCCATCATGGCATCAG+GGG | + | chr4_2:52836829-52836848 | Msa0606470:CDS | 50.0% | |
| GTTTCCCCTGATGCCATGAT+GGG | - | chr4_2:52836836-52836855 | None:intergenic | 50.0% | |
| AGTTTCCCCTGATGCCATGA+TGG | - | chr4_2:52836837-52836856 | None:intergenic | 50.0% | |
| GCCTTTAGCAGTCTGCATTG+AGG | - | chr4_2:52837440-52837459 | None:intergenic | 50.0% | |
| TCATTGGAAGAGCTGTGGGA+TGG | + | chr4_2:52837494-52837513 | Msa0606470:intron | 50.0% | |
| ! | GCCGGAGTCTATCCTGTTTT+TGG | - | chr4_2:52838159-52838178 | None:intergenic | 50.0% |
| AAAACAGGATAGACTCCGGC+TGG | + | chr4_2:52838159-52838178 | Msa0606470:intron | 50.0% | |
| GTGCTAACCCCTTCAGAAGA+AGG | - | chr4_2:52838452-52838471 | None:intergenic | 50.0% | |
| GGAATTGTGAGACCACCAGT+TGG | + | chr4_2:52838517-52838536 | Msa0606470:intron | 50.0% | |
| TGCAGCCCTTCTGATGATAC+CGG | + | chr4_2:52838698-52838717 | Msa0606470:intron | 50.0% | |
| CTCTACTTAAGGAGGTGGGT+GGG | - | chr4_2:52839060-52839079 | None:intergenic | 50.0% | |
| TGGCCTCTACTTAAGGAGGT+GGG | - | chr4_2:52839064-52839083 | None:intergenic | 50.0% | |
| ! | TTGCTGGCCTCTACTTAAGG+AGG | - | chr4_2:52839068-52839087 | None:intergenic | 50.0% |
| !! | GCTTTTCGGTCTGAGACTAG+GGG | - | chr4_2:52839328-52839347 | None:intergenic | 50.0% |
| !! | GGCTTTTCGGTCTGAGACTA+GGG | - | chr4_2:52839329-52839348 | None:intergenic | 50.0% |
| GGACAGCTCTTCAGTCTAGT+TGG | + | chr4_2:52839535-52839554 | Msa0606470:intron | 50.0% | |
| ! | AGGACATCATGTGGTGGAGA+GGG | - | chr4_2:52840157-52840176 | None:intergenic | 50.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_2:52836070-52836089 | None:intergenic | 50.0% | |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | - | chr4_2:52840369-52840388 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | - | chr4_2:52840370-52840389 | None:intergenic | 50.0% |
| ATATCCTTAACCAGTGCCCC+GGG | - | chr4_2:52841313-52841332 | None:intergenic | 50.0% | |
| CATATCCTTAACCAGTGCCC+CGG | - | chr4_2:52841314-52841333 | None:intergenic | 50.0% | |
| ! | AAAGGCGTGGATGTGCCAAA+GGG | - | chr4_2:52842594-52842613 | None:intergenic | 50.0% |
| ! | AAAAGGCGTGGATGTGCCAA+AGG | - | chr4_2:52842595-52842614 | None:intergenic | 50.0% |
| TGCAGCCCTTCTGATGATAC+CGG | + | chr4_2:52838698-52838717 | Msa0606470:intron | 50.0% | |
| !! | CCTCTATTTAAGGTGGTGGG+TGG | - | chr4_2:52842997-52843016 | None:intergenic | 50.0% |
| CCACCCACCACCTTAAATAG+AGG | + | chr4_2:52842994-52843013 | Msa0606470:intron | 50.0% | |
| ! | CTGGCCTCTATTTAAGGTGG+TGG | - | chr4_2:52843001-52843020 | None:intergenic | 50.0% |
| TGGCGGTCCTAGAGTTAAGT+CGG | - | chr4_2:52843299-52843318 | None:intergenic | 50.0% | |
| TGAGCAGGGTTGCTTGGTAT+CGG | + | chr4_2:52843729-52843748 | Msa0606470:intron | 50.0% | |
| ACTAAGGTTCTGCCCTTGCT+GGG | - | chr4_2:52843810-52843829 | None:intergenic | 50.0% | |
| TACTAAGGTTCTGCCCTTGC+TGG | - | chr4_2:52843811-52843830 | None:intergenic | 50.0% | |
| TTTGACACAGCTTGGCCTAG+AGG | - | chr4_2:52836070-52836089 | None:intergenic | 50.0% | |
| ! | GAGGACTTCATGTGGTGGAG+AGG | - | chr4_2:52835972-52835991 | None:intergenic | 55.0% |
| GAGGTGAGGACTTCATGTGG+TGG | - | chr4_2:52835977-52835996 | None:intergenic | 55.0% | |
| GTGGTGACCATGCACTCACA+TGG | - | chr4_2:52836887-52836906 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | chr4_2:52836888-52836907 | Msa0606470:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr4_2:52836891-52836910 | Msa0606470:CDS | 55.0% | |
| GTGCATGGTCACCACTAGGA+GGG | + | chr4_2:52836892-52836911 | Msa0606470:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | - | chr4_2:52837325-52837344 | None:intergenic | 55.0% | |
| CAAGGTGGATCCTACTCCAC+TGG | + | chr4_2:52838017-52838036 | Msa0606470:intron | 55.0% | |
| CCTCTACTTAAGGAGGTGGG+TGG | - | chr4_2:52839061-52839080 | None:intergenic | 55.0% | |
| CCACCCACCTCCTTAAGTAG+AGG | + | chr4_2:52839058-52839077 | Msa0606470:intron | 55.0% | |
| CTGGCCTCTACTTAAGGAGG+TGG | - | chr4_2:52839065-52839084 | None:intergenic | 55.0% | |
| !! | CGGTCTGAGACTAGGGGTTT+TGG | - | chr4_2:52839322-52839341 | None:intergenic | 55.0% |
| !! | GGGCTTTTCGGTCTGAGACT+AGG | - | chr4_2:52839330-52839349 | None:intergenic | 55.0% |
| GGCTCACCGAGACTGAAAAG+AGG | + | chr4_2:52839464-52839483 | Msa0606470:intron | 55.0% | |
| ! | GAGGACATCATGTGGTGGAG+AGG | - | chr4_2:52840158-52840177 | None:intergenic | 55.0% |
| GAGGTGAGGACATCATGTGG+TGG | - | chr4_2:52840163-52840182 | None:intergenic | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | - | chr4_2:52840354-52840373 | None:intergenic | 55.0% |
| GTGAGTGCATGGTCACCACT+AGG | + | chr4_2:52836888-52836907 | Msa0606470:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | chr4_2:52836891-52836910 | Msa0606470:CDS | 55.0% | |
| TATCCTTAACCAGTGCCCCG+GGG | - | chr4_2:52841312-52841331 | None:intergenic | 55.0% | |
| TATGCTTAACCAGTGCCCCG+AGG | + | chr4_2:52841435-52841454 | Msa0606470:intron | 55.0% | |
| ATGCTTAACCAGTGCCCCGA+GGG | + | chr4_2:52841436-52841455 | Msa0606470:intron | 55.0% | |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | chr4_2:52841891-52841910 | Msa0606470:intron | 55.0% | |
| GGAATTGTGAGACCACCTGC+TGG | + | chr4_2:52842447-52842466 | Msa0606470:intron | 55.0% | |
| TTGTGAGACCACCTGCTGGA+TGG | + | chr4_2:52842451-52842470 | Msa0606470:intron | 55.0% | |
| GGATATGACCATCCAGCAGG+TGG | - | chr4_2:52842462-52842481 | None:intergenic | 55.0% | |
| GGTACCTTCCCTTCATAGGC+AGG | + | chr4_2:52843950-52843969 | Msa0606470:intron | 55.0% | |
| TGCACCTGCCTATGAAGGGA+AGG | - | chr4_2:52843957-52843976 | None:intergenic | 55.0% | |
| CTGCTGTCTGTGCTAGTCAG+AGG | + | chr4_2:52844269-52844288 | Msa0606470:intron | 55.0% | |
| ! | GGCTAGCCGAGACTGATAAG+AGG | + | chr4_2:52844302-52844321 | Msa0606470:intron | 55.0% |
| TTGGGGTTCGCCTGCAGTGA+TGG | + | chr4_2:52836926-52836945 | Msa0606470:CDS | 60.0% | |
| GAAATGCTAACCGGTGCCCC+CGG | + | chr4_2:52841292-52841311 | Msa0606470:intron | 60.0% | |
| AAATGCTAACCGGTGCCCCC+GGG | + | chr4_2:52841293-52841312 | Msa0606470:intron | 60.0% | |
| ATCCTTAACCAGTGCCCCGG+GGG | - | chr4_2:52841311-52841330 | None:intergenic | 60.0% | |
| CAATGGGAATCGCCCCTTGC+TGG | - | chr4_2:52841722-52841741 | None:intergenic | 60.0% | |
| ACCGTCCCACAGCTCTTCCA+AGG | - | chr4_2:52841895-52841914 | None:intergenic | 60.0% | |
| AATGCTAACCGGTGCCCCCG+GGG | + | chr4_2:52841294-52841313 | Msa0606470:intron | 65.0% | |
| TCCTGCTAACCGGTGCCCTC+GGG | - | chr4_2:52841454-52841473 | None:intergenic | 65.0% | |
| GTCCTGCTAACCGGTGCCCT+CGG | - | chr4_2:52841455-52841474 | None:intergenic | 65.0% | |
| GGAAGAGCTGTGGGACGGTG+AGG | + | chr4_2:52841896-52841915 | Msa0606470:intron | 65.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | chr4_2:52841306-52841325 | Msa0606470:intron | 70.0% |
| ! | AACCAGTGCCCCGAGGGCAC+CGG | + | chr4_2:52841442-52841461 | Msa0606470:intron | 70.0% |
| CCTGCTAACCGGTGCCCTCG+GGG | - | chr4_2:52841453-52841472 | None:intergenic | 70.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | - | chr4_2:52841305-52841324 | None:intergenic | 75.0% |
| AACCGGTGCCCTCGGGGCAC+TGG | - | chr4_2:52841447-52841466 | None:intergenic | 75.0% | |
| !! | CCCCGAGGGCACCGGTTAGC+AGG | + | chr4_2:52841450-52841469 | Msa0606470:intron | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | + | chr4_2:52841300-52841319 | Msa0606470:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 52835887 | 52844571 | 52835887 | ID=Msa0606470;Name=Msa0606470 |
| chr4_2 | mRNA | 52835887 | 52844571 | 52835887 | ID=Msa0606470-mRNA-1;Parent=Msa0606470;Name=Msa0606470-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|0|0.4|5|0|342 |
| chr4_2 | exon | 52835887 | 52836108 | 52835887 | ID=Msa0606470-mRNA-1:exon:12985;Parent=Msa0606470-mRNA-1 |
| chr4_2 | exon | 52836822 | 52837001 | 52836822 | ID=Msa0606470-mRNA-1:exon:12986;Parent=Msa0606470-mRNA-1 |
| chr4_2 | exon | 52840073 | 52840318 | 52840073 | ID=Msa0606470-mRNA-1:exon:12987;Parent=Msa0606470-mRNA-1 |
| chr4_2 | exon | 52841047 | 52841226 | 52841047 | ID=Msa0606470-mRNA-1:exon:12988;Parent=Msa0606470-mRNA-1 |
| chr4_2 | exon | 52844371 | 52844571 | 52844371 | ID=Msa0606470-mRNA-1:exon:12989;Parent=Msa0606470-mRNA-1 |
| chr4_2 | CDS | 52835887 | 52836108 | 52835887 | ID=Msa0606470-mRNA-1:cds;Parent=Msa0606470-mRNA-1 |
| chr4_2 | CDS | 52836822 | 52837001 | 52836822 | ID=Msa0606470-mRNA-1:cds;Parent=Msa0606470-mRNA-1 |
| chr4_2 | CDS | 52840073 | 52840318 | 52840073 | ID=Msa0606470-mRNA-1:cds;Parent=Msa0606470-mRNA-1 |
| chr4_2 | CDS | 52841047 | 52841226 | 52841047 | ID=Msa0606470-mRNA-1:cds;Parent=Msa0606470-mRNA-1 |
| chr4_2 | CDS | 52844371 | 52844571 | 52844371 | ID=Msa0606470-mRNA-1:cds;Parent=Msa0606470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
