AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081120 MtrunA17_Chr1g0193491 97.069 580 10 3 1 579 27 600 0.0 1127
Msa0081120 MtrunA17_Chr7g0271121 79.328 387 80 0 98 484 112 498 0.0 625
Msa0081120 MtrunA17_Chr5g0442191 61.622 370 140 1 91 460 80 447 7.66e-163 479
Msa0081120 MtrunA17_Chr3g0095031 60.377 371 145 1 91 461 89 457 1.70e-158 467
Msa0081120 MtrunA17_Chr1g0204391 42.543 409 208 7 93 478 45 449 4.52e-95 303
Msa0081120 MtrunA17_Chr6g0475251 44.837 368 192 6 106 466 117 480 1.76e-93 302
Msa0081120 MtrunA17_Chr6g0449911 37.594 399 232 8 47 441 127 512 1.92e-77 261
Msa0081120 MtrunA17_Chr2g0330401 37.037 378 228 5 86 457 90 463 1.25e-74 248
Msa0081120 MtrunA17_Chr2g0293631 39.143 350 203 3 97 442 501 844 2.91e-74 258
Msa0081120 MtrunA17_Chr1g0176041 34.924 461 258 12 69 507 130 570 6.44e-71 240
Msa0081120 MtrunA17_Chr3g0121351 36.195 431 227 12 59 456 111 526 1.26e-68 234
Msa0081120 MtrunA17_Chr3g0107851 40.950 337 184 6 117 442 142 474 2.88e-68 232
Msa0081120 MtrunA17_Chr7g0236841 36.885 366 218 6 96 457 14 370 1.61e-67 227
Msa0081120 MtrunA17_Chr4g0063551 38.950 362 197 8 102 443 150 507 3.57e-67 232
Msa0081120 MtrunA17_Chr6g0483491 36.339 366 220 6 96 457 14 370 1.44e-66 224
Msa0081120 MtrunA17_Chr4g0076491 38.082 365 199 5 100 442 295 654 2.51e-66 230
Msa0081120 MtrunA17_Chr6g0449741 37.912 364 199 5 100 442 257 614 3.20e-66 229
Msa0081120 MtrunA17_Chr5g0409981 37.079 356 215 6 97 446 109 461 7.22e-66 225
Msa0081120 MtrunA17_Chr7g0270131 38.547 358 208 7 96 447 236 587 7.75e-63 222
Msa0081120 MtrunA17_Chr2g0299681 35.501 369 211 8 96 454 45 396 2.43e-62 212
Msa0081120 MtrunA17_Chr1g0200181 34.890 364 220 5 98 450 151 508 1.83e-61 214
Msa0081120 MtrunA17_Chr1g0157691 34.341 364 222 5 98 450 153 510 8.64e-60 210
Msa0081120 MtrunA17_Chr2g0297261 33.714 350 215 6 94 438 36 373 1.70e-59 204
Msa0081120 MtrunA17_Chr2g0277821 33.407 455 284 11 94 538 506 951 2.33e-59 215
Msa0081120 MtrunA17_Chr4g0070981 35.411 353 201 8 96 438 45 380 2.59e-59 204
Msa0081120 MtrunA17_Chr2g0329931 34.426 366 219 9 96 454 45 396 4.43e-59 203
Msa0081120 MtrunA17_Chr8g0342861 34.026 385 228 10 96 471 45 412 1.11e-58 202
Msa0081120 MtrunA17_Chr3g0098121 35.580 371 222 8 95 457 155 516 1.44e-56 204
Msa0081120 MtrunA17_Chr7g0247191 33.243 370 228 7 101 465 159 514 2.79e-55 196
Msa0081120 MtrunA17_Chr2g0300291 35.849 371 222 9 95 457 144 506 4.55e-55 200
Msa0081120 MtrunA17_Chr7g0247181 33.514 370 227 8 101 465 149 504 4.98e-55 195
Msa0081120 MtrunA17_Chr7g0247221 33.514 370 227 8 101 465 152 507 6.41e-55 195
Msa0081120 MtrunA17_Chr4g0058591 36.808 307 187 4 98 401 208 510 3.13e-54 193
Msa0081120 MtrunA17_Chr4g0003441 30.874 366 224 10 117 473 133 478 5.36e-52 186
Msa0081120 MtrunA17_Chr4g0040761 33.333 354 221 7 96 443 23 367 7.39e-52 191
Msa0081120 MtrunA17_Chr1g0149251 31.402 328 209 8 130 451 2 319 2.72e-50 177
Msa0081120 MtrunA17_Chr7g0236831 31.742 419 213 11 94 442 165 580 1.68e-48 181
Msa0081120 MtrunA17_Chr8g0386451 33.515 367 198 10 103 440 299 648 3.01e-48 180
Msa0081120 MtrunA17_Chr4g0062301 33.533 334 207 8 110 435 115 441 1.63e-47 176
Msa0081120 MtrunA17_Chr2g0307471 33.053 357 223 8 93 440 92 441 5.70e-47 174
Msa0081120 MtrunA17_Chr2g0310581 32.105 380 240 6 93 464 54 423 1.86e-46 171
Msa0081120 MtrunA17_Chr8g0347161 32.070 343 221 6 110 440 120 462 1.91e-46 172
Msa0081120 MtrunA17_Chr8g0347151 33.043 345 215 8 110 440 219 561 3.46e-46 173
Msa0081120 MtrunA17_Chr6g0461751 29.839 372 250 8 81 446 129 495 5.54e-46 171
Msa0081120 MtrunA17_Chr3g0114081 32.514 366 211 11 116 454 40 396 4.82e-45 169
Msa0081120 MtrunA17_Chr1g0192021 29.529 403 228 8 95 448 29 424 9.09e-45 168
Msa0081120 MtrunA17_Chr7g0263771 31.268 355 215 9 99 442 140 476 3.05e-44 167
Msa0081120 MtrunA17_Chr8g0347171 31.897 348 215 7 110 440 178 520 4.70e-43 164
Msa0081120 MtrunA17_Chr6g0466611 27.593 511 307 14 96 550 146 649 2.35e-42 163
Msa0081120 MtrunA17_Chr5g0443991 33.043 345 213 8 111 445 95 431 2.45e-41 160
Msa0081120 MtrunA17_Chr4g0029191 28.505 428 228 11 93 445 45 469 6.90e-39 152
Msa0081120 MtrunA17_Chr2g0309551 26.450 431 246 10 94 460 111 534 9.81e-39 150
Msa0081120 MtrunA17_Chr5g0429221 30.130 385 251 11 93 471 4 376 2.50e-38 147
Msa0081120 MtrunA17_Chr2g0301281 28.604 437 236 12 93 455 42 476 9.17e-38 148
Msa0081120 MtrunA17_Chr4g0034411 31.186 388 228 13 84 453 72 438 1.49e-37 149
Msa0081120 MtrunA17_Chr4g0004301 29.032 434 213 14 101 457 38 453 2.03e-36 142
Msa0081120 MtrunA17_Chr5g0434301 29.032 434 213 14 101 457 38 453 8.05e-36 141
Msa0081120 MtrunA17_Chr1g0179761 29.067 375 218 14 129 470 120 479 1.49e-33 134
Msa0081120 MtrunA17_Chr1g0169331 30.789 380 198 17 117 450 16 376 1.21e-31 127
Msa0081120 MtrunA17_Chr3g0145781 28.571 399 231 15 96 456 136 518 6.86e-31 127
Msa0081120 MtrunA17_Chr8g0342851 27.193 342 200 10 121 454 2 302 1.06e-26 111
Msa0081120 MtrunA17_Chr4g0039471 36.098 205 118 3 89 288 220 416 9.55e-26 110
Msa0081120 MtrunA17_Chr4g0062321 30.085 236 154 6 176 406 4 233 1.63e-25 105
Msa0081120 MtrunA17_Chr3g0137891 32.370 173 104 5 130 297 2 166 2.13e-22 96.3
Msa0081120 MtrunA17_Chr1g0155201 27.815 302 190 9 206 503 2 279 8.77e-22 97.4
Msa0081120 MtrunA17_Chr8g0354761 25.337 371 232 12 110 454 20 371 1.63e-21 97.8
Msa0081120 MtrunA17_Chr3g0137901 30.899 178 113 5 298 473 1 170 3.85e-20 88.6
Msa0081120 MtrunA17_Chr4g0025141 28.638 213 138 5 272 470 15 227 5.82e-18 83.6
Msa0081120 MtrunA17_Chr3g0108851 25.215 349 224 11 110 444 13 338 2.93e-17 86.3
Msa0081120 MtrunA17_Chr8g0349951 33.553 152 91 4 96 244 14 158 3.09e-17 79.3
Msa0081120 MtrunA17_Chr4g0025131 32.090 134 67 4 129 253 96 214 1.34e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081120 AT5G26742.1 67.665 501 141 6 1 484 1 497 0.0 648
Msa0081120 AT5G26742.2 67.665 501 141 6 1 484 1 497 0.0 648
Msa0081120 AT5G26742.3 78.191 376 80 1 111 484 29 404 0.0 600
Msa0081120 AT3G22330.1 58.163 392 162 1 69 460 82 471 1.35e-157 467
Msa0081120 AT3G22310.2 58.649 370 151 1 91 460 116 483 9.34e-155 459
Msa0081120 AT5G62190.1 45.932 381 195 6 93 466 98 474 9.16e-98 314
Msa0081120 AT3G01540.4 40.000 355 203 5 91 441 158 506 2.37e-79 264
Msa0081120 AT3G01540.2 40.000 355 203 5 91 441 158 506 2.37e-79 264
Msa0081120 AT3G01540.3 40.000 355 203 5 91 441 158 506 2.37e-79 264
Msa0081120 AT3G01540.1 40.000 355 203 5 91 441 158 506 2.71e-79 263
Msa0081120 AT1G55150.1 38.873 355 210 4 96 447 104 454 3.97e-76 252
Msa0081120 AT1G55150.2 38.873 355 210 4 96 447 129 479 1.72e-75 251
Msa0081120 AT5G14610.2 38.418 354 210 5 91 441 161 509 3.81e-75 253
Msa0081120 AT5G14610.6 38.701 354 209 5 91 441 161 509 4.68e-75 253
Msa0081120 AT5G14610.5 38.701 354 209 5 91 441 169 517 5.95e-75 253
Msa0081120 AT5G14610.7 39.601 351 197 7 96 441 38 378 1.27e-73 246
Msa0081120 AT5G14610.3 39.601 351 197 7 96 441 38 378 1.27e-73 246
Msa0081120 AT5G14610.1 36.301 438 249 8 18 441 156 577 5.82e-73 249
Msa0081120 AT3G06480.1 36.294 394 235 4 53 442 403 784 3.68e-72 252
Msa0081120 AT5G63120.2 35.128 390 228 6 84 456 144 525 1.59e-69 237
Msa0081120 AT2G42520.2 37.958 382 202 10 116 477 184 550 2.93e-67 231
Msa0081120 AT2G42520.1 37.958 382 202 10 116 477 184 550 2.93e-67 231
Msa0081120 AT2G42520.3 37.958 382 202 10 116 477 184 550 2.93e-67 231
Msa0081120 AT1G31970.1 40.828 338 192 7 116 446 139 475 3.38e-67 229
Msa0081120 AT3G58510.1 35.589 399 236 9 59 441 119 512 2.12e-65 226
Msa0081120 AT3G58510.3 35.589 399 236 9 59 441 119 512 2.12e-65 226
Msa0081120 AT3G58510.2 35.589 399 236 9 59 441 119 512 2.12e-65 226
Msa0081120 AT3G58570.1 38.418 354 197 8 105 441 160 509 3.65e-65 226
Msa0081120 AT2G33730.1 38.251 366 197 6 100 442 322 681 5.49e-65 228
Msa0081120 AT2G47330.1 39.944 358 203 8 96 447 233 584 1.71e-64 226
Msa0081120 AT5G51280.1 35.246 366 220 5 96 450 151 510 5.99e-64 222
Msa0081120 AT5G14610.4 38.209 335 194 7 97 428 175 499 3.10e-63 218
Msa0081120 AT1G20920.2 37.644 348 206 7 97 438 197 539 5.51e-63 223
Msa0081120 AT5G60990.1 35.925 373 228 6 93 457 11 380 7.25e-63 215
Msa0081120 AT1G72730.1 36.494 348 194 9 117 454 67 397 1.00e-61 211
Msa0081120 AT1G20920.4 37.216 352 210 7 97 442 535 881 1.14e-61 223
Msa0081120 AT1G20920.6 37.216 352 210 7 97 442 535 881 1.14e-61 223
Msa0081120 AT1G20920.3 37.216 352 210 7 97 442 535 881 1.14e-61 223
Msa0081120 AT1G20920.7 37.216 352 210 7 97 442 535 881 1.14e-61 223
Msa0081120 AT1G20920.5 37.216 352 210 7 97 442 535 881 1.14e-61 223
Msa0081120 AT1G20920.1 37.216 352 210 7 97 442 535 881 1.14e-61 223
Msa0081120 AT4G33370.1 35.501 369 218 6 88 445 97 456 2.87e-61 213
Msa0081120 AT3G06480.2 35.083 362 219 5 53 410 403 752 2.72e-60 215
Msa0081120 AT3G19760.1 33.621 348 214 6 96 438 40 375 7.35e-60 206
Msa0081120 AT3G13920.4 35.112 356 204 9 109 454 52 390 1.27e-59 205
Msa0081120 AT1G51380.1 35.043 351 201 9 117 457 48 381 1.52e-59 204
Msa0081120 AT3G13920.3 34.146 369 216 9 96 454 34 385 1.68e-59 204
Msa0081120 AT3G13920.1 34.511 368 216 9 96 454 44 395 1.94e-59 205
Msa0081120 AT3G13920.5 34.048 373 219 9 96 458 48 403 4.75e-59 204
Msa0081120 AT3G13920.2 34.048 373 219 9 96 458 44 399 6.17e-59 204
Msa0081120 AT1G54270.2 34.551 356 206 9 109 454 52 390 3.89e-58 201
Msa0081120 AT1G54270.1 33.604 369 218 9 96 454 44 395 7.38e-58 201
Msa0081120 AT1G28180.1 36.923 325 196 4 126 446 8 327 1.30e-57 199
Msa0081120 AT4G16630.1 36.119 371 220 7 95 457 171 532 5.71e-57 206
Msa0081120 AT3G09620.1 35.897 351 187 7 97 442 402 719 6.48e-57 208
Msa0081120 AT3G09620.2 35.897 351 187 7 97 442 403 720 6.83e-57 207
Msa0081120 AT4G00660.1 33.784 370 226 8 101 465 141 496 1.41e-55 197
Msa0081120 AT4G00660.2 33.784 370 226 8 101 465 141 496 1.41e-55 197
Msa0081120 AT5G63120.3 35.191 341 200 5 84 407 144 480 1.44e-55 196
Msa0081120 AT5G63120.4 35.191 341 200 5 84 407 144 480 1.44e-55 196
Msa0081120 AT5G63120.5 35.191 341 200 5 84 407 144 480 1.44e-55 196
Msa0081120 AT3G61240.2 33.241 361 222 7 102 457 135 481 1.46e-55 197
Msa0081120 AT3G61240.1 33.241 361 222 7 102 457 135 481 1.46e-55 197
Msa0081120 AT5G63120.1 35.224 335 196 5 84 401 144 474 4.42e-55 195
Msa0081120 AT1G77030.1 31.726 394 229 9 102 486 39 401 4.65e-54 198
Msa0081120 AT1G16280.1 33.422 374 231 6 96 461 63 426 6.57e-54 192
Msa0081120 AT2G45810.1 33.241 361 222 8 102 457 165 511 8.62e-53 190
Msa0081120 AT3G18600.1 33.524 349 224 4 96 440 94 438 3.34e-52 189
Msa0081120 AT5G11170.1 31.000 400 248 12 85 473 35 417 6.26e-50 179
Msa0081120 AT5G11200.1 31.000 400 248 12 85 473 35 417 6.26e-50 179
Msa0081120 AT5G65900.1 34.188 351 220 6 105 449 168 513 2.54e-49 182
Msa0081120 AT5G08620.1 34.384 349 205 10 110 440 99 441 9.43e-49 179
Msa0081120 AT5G11170.2 31.143 350 218 10 130 473 2 334 1.46e-48 173
Msa0081120 AT1G71370.1 31.915 376 229 9 83 440 6 372 1.56e-48 179
Msa0081120 AT5G05450.1 31.481 378 224 10 102 454 27 394 5.67e-48 177
Msa0081120 AT5G08610.1 33.811 349 207 10 110 440 401 743 2.39e-47 179
Msa0081120 AT3G02065.3 32.044 362 236 7 85 440 104 461 2.55e-46 171
Msa0081120 AT3G02065.2 32.044 362 236 7 85 440 104 461 2.55e-46 171
Msa0081120 AT5G63630.1 32.303 356 217 8 103 440 66 415 2.37e-45 169
Msa0081120 AT5G63630.2 32.402 358 214 10 103 440 260 609 6.88e-45 171
Msa0081120 AT1G63250.1 31.339 351 228 7 103 440 340 690 3.42e-44 169
Msa0081120 AT1G12770.2 27.804 428 245 10 95 463 114 536 7.15e-44 165
Msa0081120 AT1G12770.1 27.804 428 245 10 95 463 114 536 7.15e-44 165
Msa0081120 AT2G07750.1 31.624 351 227 7 103 440 387 737 7.70e-44 169
Msa0081120 AT5G11200.3 28.636 440 247 13 85 473 35 458 8.62e-44 163
Msa0081120 AT3G02065.1 31.776 321 209 7 125 439 7 323 6.29e-43 159
Msa0081120 AT3G09720.2 30.532 357 225 9 94 442 144 485 7.66e-43 162
Msa0081120 AT3G09720.1 30.532 357 225 9 94 442 144 485 7.66e-43 162
Msa0081120 AT4G15850.1 28.713 505 274 15 83 513 21 513 7.01e-42 159
Msa0081120 AT4G34910.1 30.026 383 220 7 95 431 50 430 1.79e-40 157
Msa0081120 AT3G16840.2 29.657 408 215 10 102 440 202 606 4.76e-40 157
Msa0081120 AT5G11200.2 27.352 457 249 14 85 473 35 476 5.33e-40 153
Msa0081120 AT3G16840.1 29.657 408 215 10 102 440 201 605 5.44e-40 157
Msa0081120 AT4G09730.1 31.335 367 219 13 92 435 113 469 2.68e-39 153
Msa0081120 AT5G54910.1 31.161 353 204 10 117 449 97 430 3.56e-37 148
Msa0081120 AT2G40700.1 27.336 428 225 10 93 440 32 453 4.46e-37 147
Msa0081120 AT3G53110.1 29.769 346 195 11 119 435 119 445 1.85e-33 134
Msa0081120 AT1G51380.2 37.681 207 113 6 117 319 48 242 2.65e-32 126
Msa0081120 AT3G06980.1 27.297 381 246 10 93 445 376 753 5.05e-32 132
Msa0081120 AT1G71280.2 29.538 325 166 9 102 405 28 310 4.17e-31 124
Msa0081120 AT1G51380.4 37.097 186 103 4 117 298 48 223 1.63e-30 122
Msa0081120 AT1G51380.3 37.097 186 103 4 117 298 48 223 2.55e-30 121
Msa0081120 AT1G71280.1 30.530 321 176 11 102 409 28 314 5.00e-30 124
Msa0081120 AT1G28180.2 37.719 114 69 1 125 236 7 120 2.83e-16 75.9

Find 201 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAATTTCACTAAGTTTA+AGG 0.070746 1_2:-59651986 None:intergenic
TTAAACACAGTTTGTGTTTA+TGG 0.100094 1_2:+59651864 Msa0081120:CDS
AGTTGGAACACATTCAATTT+TGG 0.182549 1_2:+59654950 Msa0081120:CDS
ACTTAGTGAAATTCAGTATT+TGG 0.201862 1_2:+59651992 Msa0081120:CDS
CTAAGAGAAGTACCGTTAAT+TGG 0.227037 1_2:-59654929 None:intergenic
CTTTGATGTGTAGTTCTTTC+GGG 0.236568 1_2:-59655043 None:intergenic
AGACTAATTGACCTCATAAA+TGG 0.244644 1_2:+59651957 Msa0081120:CDS
TCAGTGAGACCCTTGATAAT+TGG 0.264507 1_2:-59651611 None:intergenic
CTCTGCAACCATGCCGGGTT+GGG 0.279011 1_2:+59652112 Msa0081120:CDS
CAATCCATTGACTATTGATT+TGG 0.284192 1_2:+59652163 Msa0081120:CDS
CTTCGTCGTCATCAGGTTCT+AGG 0.291225 1_2:+59654639 Msa0081120:CDS
TCAAAGCGGAGAATTCTTTA+TGG 0.300787 1_2:+59652829 Msa0081120:CDS
AGATATTCCCAATGTTGATT+TGG 0.306096 1_2:+59653471 Msa0081120:CDS
CTGAATTTCACTAAGTTTAA+GGG 0.312808 1_2:-59651985 None:intergenic
GAACTCTAAATTGTGACTTT+TGG 0.313236 1_2:+59655370 Msa0081120:three_prime_UTR
CTCTATGGAGATTACTAAAT+AGG 0.315945 1_2:-59655084 None:intergenic
ACACAAACTGTGTTTAAATA+AGG 0.318840 1_2:-59651858 None:intergenic
GCTTTGATGTGTAGTTCTTT+CGG 0.334131 1_2:-59655044 None:intergenic
ATCAAATGCGGGAACCTCTA+TGG 0.338170 1_2:-59655099 None:intergenic
AGTGGTGATGACTGGTTAAT+TGG 0.352807 1_2:+59654680 Msa0081120:CDS
TGCTTTGCTAACTCCCTAGT+TGG 0.358455 1_2:-59651807 None:intergenic
TTAACGGTACTTCTCTTAGT+TGG 0.363400 1_2:+59654933 Msa0081120:CDS
GCCCGTGCAAAGACCGGCAC+TGG 0.365374 1_2:+59651566 Msa0081120:CDS
AACTTGCCTGGTAGATGATT+CGG 0.368381 1_2:-59654381 None:intergenic
TTCCGATGGAAGAAGCCATT+TGG 0.369204 1_2:-59651075 None:intergenic
TCAAACAGATCTTCGTCTTC+AGG 0.370048 1_2:+59654521 Msa0081120:CDS
GGTGGGGATGACTGGCTAAC+TGG 0.370356 1_2:+59654572 Msa0081120:CDS
GATGACTGGCTAACTGGAAC+TGG 0.372565 1_2:+59654578 Msa0081120:CDS
GAAGTAATTATAGAGGATCT+AGG 0.374885 1_2:+59654426 Msa0081120:CDS
GGTGCAAGGACCAGTACTTT+AGG 0.378658 1_2:-59651786 None:intergenic
CACCCCTCAAGAAGCCTTCA+AGG 0.382918 1_2:+59651261 Msa0081120:CDS
CTGACCAGATGCTTGCTGTT+GGG 0.386736 1_2:+59652027 Msa0081120:CDS
TCCGATGGAAGAAGCCATTT+GGG 0.396483 1_2:-59651074 None:intergenic
GAACTTACCAAATCAACATT+GGG 0.398223 1_2:-59653478 None:intergenic
TGGAAGAAGCCATTTGGGTT+TGG 0.399406 1_2:-59651069 None:intergenic
TTTACCAAATCAATAGTCAA+TGG 0.399544 1_2:-59652167 None:intergenic
ATCGAAAGCAAAACCCTTGA+AGG 0.402035 1_2:-59651275 None:intergenic
GGGTGAGGATAGGAGCGTTG+GGG 0.402877 1_2:-59651243 None:intergenic
GGTGGGGATGACTGGCGAAC+TGG 0.411571 1_2:+59654470 Msa0081120:CDS
GATGTTGTGGTTGGAACACC+TGG 0.411964 1_2:+59651933 Msa0081120:CDS
GGGGTGAGGATAGGAGCGTT+GGG 0.413137 1_2:-59651244 None:intergenic
GTACATCGCTCTGGCCGTAC+TGG 0.416882 1_2:+59654230 Msa0081120:CDS
TTAAAACCGGTGGGGATGAC+TGG 0.418638 1_2:+59654564 Msa0081120:CDS
TCCCAGTGCCGGTCTTTGCA+CGG 0.418847 1_2:-59651568 None:intergenic
TTAGAACCGGTGGGGATGAC+TGG 0.422719 1_2:+59654462 Msa0081120:CDS
TCACCTACCTCATATTGCTT+TGG 0.423300 1_2:-59651640 None:intergenic
GTTCATTGCAGAGGTAGTTA+TGG 0.424073 1_2:+59654856 Msa0081120:intron
TAAGGGTTCTCCCATTTATG+AGG 0.428492 1_2:-59651968 None:intergenic
AAATTGATTTAGTGTTTGTT+GGG 0.430422 1_2:+59655157 Msa0081120:three_prime_UTR
TGGTTGTCCACAACTAAAAC+AGG 0.430808 1_2:-59654884 None:intergenic
GATGCTTGCTGTTGGGTTTG+AGG 0.432183 1_2:+59652034 Msa0081120:CDS
GATCTTCGTCTTCAGGCTCT+AGG 0.434585 1_2:+59654528 Msa0081120:CDS
TCTCTGCAACCATGCCGGGT+TGG 0.436565 1_2:+59652111 Msa0081120:CDS
ATTTGGAATTCCAATTATCA+AGG 0.441819 1_2:+59651601 Msa0081120:CDS
TAAGAGAAGTACCGTTAATT+GGG 0.442189 1_2:-59654928 None:intergenic
AAAATTGATTTAGTGTTTGT+TGG 0.443100 1_2:+59655156 Msa0081120:three_prime_UTR
GAACTTGATATTTCCAAGCT+TGG 0.446617 1_2:+59651346 Msa0081120:CDS
GTGTTGCTCCCTGCATTAGA+AGG 0.447865 1_2:+59651530 Msa0081120:CDS
TGAACTTACCAAATCAACAT+TGG 0.449440 1_2:-59653479 None:intergenic
GATGACTGGCGAACTGGAGG+TGG 0.451351 1_2:+59654476 Msa0081120:CDS
TTTCTGAAAGACAGCTGAGC+AGG 0.451510 1_2:-59655226 None:intergenic
AACAGATCTTCGTCGTCATC+AGG 0.453544 1_2:+59654632 Msa0081120:CDS
TGTTTGAAAGAAAATTATAC+AGG 0.453994 1_2:-59655325 None:intergenic
CCCAGTGCCGGTCTTTGCAC+GGG 0.455185 1_2:-59651567 None:intergenic
CAAACCCAACAGCAAGCATC+TGG 0.456638 1_2:-59652031 None:intergenic
AGAGATAGAAGTAATTATAG+AGG 0.457285 1_2:+59654419 Msa0081120:CDS
CAATCTGACGCCCGATGCCC+TGG 0.458234 1_2:-59654904 None:intergenic
ACTTGCCTGGTAGATGATTC+GGG 0.461760 1_2:-59654380 None:intergenic
TTGTGGACAACCAGGGCATC+GGG 0.462191 1_2:+59654894 Msa0081120:CDS
GGTGAGGATAGGAGCGTTGG+GGG 0.469357 1_2:-59651242 None:intergenic
AACCCTTGAAGGCTTCTTGA+GGG 0.471597 1_2:-59651264 None:intergenic
CTCTCGAAACCAAACCCAAA+TGG 0.472675 1_2:+59651060 Msa0081120:exon
AAGTTGGTGTATTGAGAAGT+TGG 0.474560 1_2:-59651117 None:intergenic
CAGAGAGAGAAAACATTGAA+TGG 0.475305 1_2:+59653391 Msa0081120:CDS
AGCATAATCTGGCGCTGAGA+TGG 0.477648 1_2:-59652086 None:intergenic
GCTGACCAGATGCTTGCTGT+TGG 0.478095 1_2:+59652026 Msa0081120:CDS
AAGGGTGTTTAGACGGGAAG+TGG 0.479860 1_2:-59651158 None:intergenic
AGGAGCGGCAAGGAAGGATA+AGG 0.480165 1_2:-59651033 None:intergenic
ATCATTGCCCGTGCAAAGAC+CGG 0.483333 1_2:+59651560 Msa0081120:CDS
ATATCTCTACCTTCTAATGC+AGG 0.483587 1_2:-59651539 None:intergenic
TGAACCACTTAGGCCATCAC+TGG 0.484550 1_2:-59655002 None:intergenic
TTGCAGAGAAAAGCATAATC+TGG 0.485007 1_2:-59652097 None:intergenic
CGTGGTGTTGATGTTGTGGT+TGG 0.486388 1_2:+59651924 Msa0081120:CDS
CGTCAGATTGTCCCAATTAA+CGG 0.488304 1_2:+59654917 Msa0081120:CDS
GACTAATTGACCTCATAAAT+GGG 0.493948 1_2:+59651958 Msa0081120:CDS
TGGCTAACTGGAACTGGAGG+TGG 0.494049 1_2:+59654584 Msa0081120:CDS
TGGTCGGCTTCCTAAAGTAC+TGG 0.494432 1_2:+59651776 Msa0081120:CDS
AGGAGAAGGAGCGGCAAGGA+AGG 0.498115 1_2:-59651039 None:intergenic
ACCCAAATGGCTTCTTCCAT+CGG 0.499197 1_2:+59651073 Msa0081120:exon
CTGAGAAGGAAAACCAAGCT+TGG 0.501773 1_2:-59651359 None:intergenic
ACTGGGAAGACATTAGCATT+TGG 0.502302 1_2:+59651584 Msa0081120:CDS
GTTGTGGACAACCAGGGCAT+CGG 0.502872 1_2:+59654893 Msa0081120:CDS
TAATATTTCTGTGGAGTGAA+TGG 0.504401 1_2:-59655284 None:intergenic
AGGGGTGAGGATAGGAGCGT+TGG 0.505779 1_2:-59651245 None:intergenic
GACAACTTCTTGACCCAACC+CGG 0.511795 1_2:-59652125 None:intergenic
ATATCCTTTGAGCGCGAAGT+AGG 0.513620 1_2:+59654314 Msa0081120:CDS
GTTAGCAAAGCAAGTAGAGA+AGG 0.514220 1_2:+59651818 Msa0081120:CDS
TCTCCGCTTTGATGTTGAAG+TGG 0.515468 1_2:-59652818 None:intergenic
TGCTAATGTCTTCCCAGTGC+CGG 0.517376 1_2:-59651579 None:intergenic
TTAAAACCAGTGGTGATGAC+TGG 0.517463 1_2:+59654672 Msa0081120:CDS
TTGAAGTTGGATACCTGAAT+GGG 0.518186 1_2:-59651424 None:intergenic
ACAAAAGTCTCAGGACCATC+GGG 0.518681 1_2:-59654209 None:intergenic
ATGAGGTCAATTAGTCTCCC+AGG 0.519366 1_2:-59651951 None:intergenic
GAGCGATGTACAAAAGTCTC+AGG 0.519453 1_2:-59654218 None:intergenic
ACGGAGAAGGGTGTTTAGAC+GGG 0.520049 1_2:-59651164 None:intergenic
GACGGAGAAGGGTGTTTAGA+CGG 0.520500 1_2:-59651165 None:intergenic
CTATTTAGTAATCTCCATAG+AGG 0.522599 1_2:+59655085 Msa0081120:three_prime_UTR
GTTGAAGTTGGATACCTGAA+TGG 0.525180 1_2:-59651425 None:intergenic
GGTTTGGTTTCGAGAGGAGA+AGG 0.525936 1_2:-59651053 None:intergenic
TTTATCTCAGGCGGTCTGGT+CGG 0.527861 1_2:+59651760 Msa0081120:intron
TTTGTTGGGGCAATGTTACT+CGG 0.528217 1_2:+59655171 Msa0081120:three_prime_UTR
GCATAATCTGGCGCTGAGAT+GGG 0.533531 1_2:-59652085 None:intergenic
TTCAATTTCTTGAACCACTT+AGG 0.535382 1_2:-59655012 None:intergenic
TACAAAAGTCTCAGGACCAT+CGG 0.536572 1_2:-59654210 None:intergenic
ATCTTCGTCTTCAGGCTCTA+GGG 0.536603 1_2:+59654529 Msa0081120:CDS
AGTTGGTGTATTGAGAAGTT+GGG 0.537093 1_2:-59651116 None:intergenic
TTCACGTGGTGTTGATGTTG+TGG 0.537970 1_2:+59651920 Msa0081120:CDS
GCAGCCTACTTCGCGCTCAA+AGG 0.538313 1_2:-59654318 None:intergenic
CTTCTATCTCTATCAAGTGT+AGG 0.539095 1_2:-59654407 None:intergenic
CTTCTTGACCCAACCCGGCA+TGG 0.547157 1_2:-59652120 None:intergenic
TGAAGGCTTCTTGAGGGGTG+AGG 0.547252 1_2:-59651258 None:intergenic
AAACCCTTGAAGGCTTCTTG+AGG 0.547935 1_2:-59651265 None:intergenic
TTCGTCGTCATCAGGTTCTA+GGG 0.548645 1_2:+59654640 Msa0081120:CDS
AAGTAATTATAGAGGATCTA+GGG 0.551599 1_2:+59654427 Msa0081120:CDS
AGAGAAGAAAAGCTTGCTGA+AGG 0.552690 1_2:+59652772 Msa0081120:CDS
GGGGATGACTGGCGAACTGG+AGG 0.555224 1_2:+59654473 Msa0081120:CDS
GGTAAATCTTGCATAGGTGG+TGG 0.555366 1_2:-59654359 None:intergenic
CATTGCAGAGGTAGTTATGG+AGG 0.556291 1_2:+59654859 Msa0081120:intron
AAGTGTAGGAACAACTTGCC+TGG 0.557140 1_2:-59654393 None:intergenic
GAGAAGAAAAGCTTGCTGAA+GGG 0.558256 1_2:+59652773 Msa0081120:CDS
ACCCCTCAAGAAGCCTTCAA+GGG 0.559086 1_2:+59651262 Msa0081120:CDS
TTTGGAATTCCAATTATCAA+GGG 0.559273 1_2:+59651602 Msa0081120:CDS
CAACGGGAACATGACTAAGT+TGG 0.559293 1_2:-59651309 None:intergenic
ACTGGTCCTTGCACCAACTA+GGG 0.559610 1_2:+59651794 Msa0081120:CDS
GCTTCTTGAGGGGTGAGGAT+AGG 0.560942 1_2:-59651253 None:intergenic
TATGATAGCTAATATTTCTG+TGG 0.562030 1_2:-59655293 None:intergenic
TCTGGCCGTACTGGACGTGC+AGG 0.562067 1_2:+59654239 Msa0081120:CDS
AATTGATTTAGTGTTTGTTG+GGG 0.565006 1_2:+59655158 Msa0081120:three_prime_UTR
TTGTAGAGTGAAAATGAAGT+TGG 0.566352 1_2:-59651133 None:intergenic
TACTGGTCCTTGCACCAACT+AGG 0.566760 1_2:+59651793 Msa0081120:CDS
CATTTGGGTTTGGTTTCGAG+AGG 0.566819 1_2:-59651059 None:intergenic
CCCGTGCAAAGACCGGCACT+GGG 0.569064 1_2:+59651567 Msa0081120:CDS
GGTCCATGTGCATAGTGAGC+AGG 0.569388 1_2:-59655401 None:intergenic
AGAATGACCAAAGCAATATG+AGG 0.569951 1_2:+59651633 Msa0081120:CDS
GGTCTTCCCACCATTTGCAT+AGG 0.572519 1_2:-59653269 None:intergenic
GTTAGGACGGAGACGGAGAA+GGG 0.573864 1_2:-59651176 None:intergenic
AATTAACCAGTCATCACCAC+TGG 0.576337 1_2:-59654678 None:intergenic
AGTGAGTCAACAAGCTGAGA+AGG 0.576992 1_2:-59651373 None:intergenic
AAAAGTCTGATATCAAATGC+GGG 0.579088 1_2:-59655110 None:intergenic
AATTCAGCTGCATCCAGTGA+TGG 0.579381 1_2:+59654989 Msa0081120:CDS
AGTTAGCCAGTCATCCCCAC+CGG 0.580437 1_2:-59654570 None:intergenic
GCTACCGACGTTGCTTCTCG+TGG 0.581057 1_2:+59653445 Msa0081120:CDS
TCGGGTAAATCTTGCATAGG+TGG 0.581209 1_2:-59654362 None:intergenic
ACTGGACGTGCAGGAAAAGA+AGG 0.582768 1_2:+59654248 Msa0081120:CDS
GGTTAGGACGGAGACGGAGA+AGG 0.582894 1_2:-59651177 None:intergenic
GCATCCAGTGATGGCCTAAG+TGG 0.582998 1_2:+59654998 Msa0081120:CDS
ACTGGAGGTGGACGATCAAG+TGG 0.584590 1_2:+59654488 Msa0081120:CDS
ACTGGAGGTGGACGATCAAG+TGG 0.584590 1_2:+59654596 Msa0081120:CDS
TTGCTTCATTAGAGAGTGTG+CGG 0.585375 1_2:+59651010 Msa0081120:five_prime_UTR
ACCCTTGAAGGCTTCTTGAG+GGG 0.585790 1_2:-59651263 None:intergenic
AATCTGGCGCTGAGATGGGA+TGG 0.590472 1_2:-59652081 None:intergenic
CTAACTCCCTAGTTGGTGCA+AGG 0.591840 1_2:-59651800 None:intergenic
GAAATAACGAAGGAAACTGT+GGG 0.591997 1_2:-59651208 None:intergenic
ATTGCAGAGGTAGTTATGGA+GGG 0.595367 1_2:+59654860 Msa0081120:intron
AGAAATAACGAAGGAAACTG+TGG 0.597293 1_2:-59651209 None:intergenic
TTTAGGCCTATGCAAATGGT+GGG 0.598035 1_2:+59653263 Msa0081120:intron
CGAGAGGAGAAGGAGCGGCA+AGG 0.599390 1_2:-59651043 None:intergenic
AGTTCGCCAGTCATCCCCAC+CGG 0.600061 1_2:-59654468 None:intergenic
ATACCTGCTCACTATGCACA+TGG 0.601321 1_2:+59655398 Msa0081120:three_prime_UTR
AAGTGGTTCAAGAAATTGAA+AGG 0.601500 1_2:+59655015 Msa0081120:exon
CAGAGAAATGCACTTTCACG+TGG 0.608613 1_2:+59651906 Msa0081120:CDS
GTTTATGGAAGAAGTTCCGA+TGG 0.609496 1_2:-59651089 None:intergenic
AAGCAACGTCGGTAGCAACA+AGG 0.611860 1_2:-59653438 None:intergenic
TATCTCTACCTTCTAATGCA+GGG 0.614987 1_2:-59651538 None:intergenic
TCATCAGGTTCTAGGGAGAG+AGG 0.616285 1_2:+59654647 Msa0081120:CDS
ATAGCTTCTAAACCACTACA+TGG 0.622535 1_2:+59653352 Msa0081120:CDS
GATTCGGGTAAATCTTGCAT+AGG 0.625880 1_2:-59654365 None:intergenic
CATACTTTGAAACAAACACA+TGG 0.626477 1_2:-59655422 None:intergenic
AGACGAAGATCTGTTTGATG+AGG 0.635097 1_2:-59654516 None:intergenic
AACACAGTTTGTGTTTATGG+TGG 0.639402 1_2:+59651867 Msa0081120:CDS
GACTGGCTAACTGGAACTGG+AGG 0.640148 1_2:+59654581 Msa0081120:CDS
GGTGATGACTGGTTAATTGG+AGG 0.643911 1_2:+59654683 Msa0081120:CDS
TTGCAGAGGTAGTTATGGAG+GGG 0.644021 1_2:+59654861 Msa0081120:intron
ATACATTATGAACTTCCCGA+TGG 0.645169 1_2:+59654194 Msa0081120:CDS
CTTTCAAACAAGCTTTCCCG+TGG 0.646855 1_2:+59655338 Msa0081120:three_prime_UTR
GTTGACTCACTTCAGAGACG+TGG 0.653738 1_2:+59651385 Msa0081120:CDS
TGAGAGATATCACCATGTAG+TGG 0.665455 1_2:-59653364 None:intergenic
TGCAGCTGAATTCTTGAACA+AGG 0.665556 1_2:-59654978 None:intergenic
ATTTACCCGAATCATCTACC+AGG 0.667284 1_2:+59654375 Msa0081120:CDS
GGTTTCGAGAGGAGAAGGAG+CGG 0.685868 1_2:-59651048 None:intergenic
GGCAATAGCAGAAATAACGA+AGG 0.690915 1_2:-59651218 None:intergenic
CTGGAGGTGGACGATCAAGT+GGG 0.691338 1_2:+59654489 Msa0081120:CDS
CTGGAGGTGGACGATCAAGT+GGG 0.691338 1_2:+59654597 Msa0081120:CDS
ATGTTGTGGTTGGAACACCT+GGG 0.694661 1_2:+59651934 Msa0081120:CDS
AGAGGATCTAGGGATCAAAG+TGG 0.704990 1_2:+59654437 Msa0081120:CDS
AATAACGAAGGAAACTGTGG+GGG 0.709480 1_2:-59651206 None:intergenic
CAGCCACTTCAACATCAAAG+CGG 0.718579 1_2:+59652815 Msa0081120:CDS
AAATAACGAAGGAAACTGTG+GGG 0.742350 1_2:-59651207 None:intergenic
TGAAGTTGGATACCTGAATG+GGG 0.754768 1_2:-59651423 None:intergenic
TAGTCCACGAGAAGCAACGT+CGG 0.755822 1_2:-59653449 None:intergenic
TCAGGCTCTAGGGATCAGAG+AGG 0.774336 1_2:+59654539 Msa0081120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAAATTAACAAAC+AGG - chr1_2:59651690-59651709 None:intergenic 10.0%
!! ATTATTATAATGATGCATTT+CGG + chr1_2:59651731-59651750 Msa0081120:intron 15.0%
!!! TAAAATACCTAATCATTTTA+TGG + chr1_2:59652441-59652460 Msa0081120:intron 15.0%
!!! AAGATTTTGGTTTTAAAATT+TGG + chr1_2:59653718-59653737 Msa0081120:intron 15.0%
!! ATAAAATAAAAACATTGGAA+TGG - chr1_2:59654154-59654173 None:intergenic 15.0%
!! AATAAAGTAAATGTTGAAGT+TGG - chr1_2:59651440-59651459 None:intergenic 20.0%
!!! CTAAATTTTACTACAAGATA+AGG - chr1_2:59651471-59651490 None:intergenic 20.0%
!! AATAAATGAGACATGTAATT+TGG - chr1_2:59652219-59652238 None:intergenic 20.0%
!! AATAGAAAAGTCATAGATTA+TGG - chr1_2:59652392-59652411 None:intergenic 20.0%
!! AACTAGATTATTCATGAAAT+GGG - chr1_2:59652477-59652496 None:intergenic 20.0%
!! AAACTAGATTATTCATGAAA+TGG - chr1_2:59652478-59652497 None:intergenic 20.0%
!!! TAATCACATTTTCATCTTTT+TGG + chr1_2:59652512-59652531 Msa0081120:intron 20.0%
!!! TTTCACTTTTCTTTTTAACA+AGG + chr1_2:59652741-59652760 Msa0081120:intron 20.0%
!!! TGTATATTATCATGTCTTTT+AGG + chr1_2:59653246-59653265 Msa0081120:intron 20.0%
!!! ATTACTGTTATTTGGTATTT+AGG + chr1_2:59653649-59653668 Msa0081120:intron 20.0%
!! TAAGTTTGATTACTGTTATT+TGG + chr1_2:59653676-59653695 Msa0081120:intron 20.0%
!!! ATTACTGTTATTTGGTATTT+AGG + chr1_2:59653649-59653668 Msa0081120:intron 20.0%
!!! GGATTTCTCAATTTTTAATT+TGG + chr1_2:59653813-59653832 Msa0081120:intron 20.0%
!! ATCCAAAATTTACATATAAC+AGG - chr1_2:59653843-59653862 None:intergenic 20.0%
!!! ATTTCAATTTTGTTTACCAT+CGG + chr1_2:59654020-59654039 Msa0081120:intron 20.0%
!!! AAAAAGATGTTTTTATGCTT+TGG + chr1_2:59654080-59654099 Msa0081120:intron 20.0%
!!! ACTAAATCAATTTTACATCA+CGG - chr1_2:59655150-59655169 None:intergenic 20.0%
!!! AAAATTGATTTAGTGTTTGT+TGG + chr1_2:59655156-59655175 Msa0081120:three_prime_UTR 20.0%
!!! AAATTGATTTAGTGTTTGTT+GGG + chr1_2:59655157-59655176 Msa0081120:three_prime_UTR 20.0%
!! TGTTTGAAAGAAAATTATAC+AGG - chr1_2:59655328-59655347 None:intergenic 20.0%
!! ATTTGGAATTCCAATTATCA+AGG + chr1_2:59651601-59651620 Msa0081120:CDS 25.0%
!! TTTGGAATTCCAATTATCAA+GGG + chr1_2:59651602-59651621 Msa0081120:CDS 25.0%
! ACACAAACTGTGTTTAAATA+AGG - chr1_2:59651861-59651880 None:intergenic 25.0%
! TTAAACACAGTTTGTGTTTA+TGG + chr1_2:59651864-59651883 Msa0081120:CDS 25.0%
! CTGAATTTCACTAAGTTTAA+GGG - chr1_2:59651988-59652007 None:intergenic 25.0%
! ACTGAATTTCACTAAGTTTA+AGG - chr1_2:59651989-59652008 None:intergenic 25.0%
! ACTTAGTGAAATTCAGTATT+TGG + chr1_2:59651992-59652011 Msa0081120:CDS 25.0%
! TTTACCAAATCAATAGTCAA+TGG - chr1_2:59652170-59652189 None:intergenic 25.0%
! TCAACAAGACTCAAATAATT+GGG - chr1_2:59652307-59652326 None:intergenic 25.0%
! ACAAAGACCATAAAATGATT+AGG - chr1_2:59652451-59652470 None:intergenic 25.0%
! ACTAGATTATTCATGAAATG+GGG - chr1_2:59652476-59652495 None:intergenic 25.0%
! GATATGCATGTATAATCAAT+TGG + chr1_2:59652557-59652576 Msa0081120:intron 25.0%
! TTATAGTCCAAATCTATGAA+TGG - chr1_2:59652600-59652619 None:intergenic 25.0%
!!! AATTTTTTATGTCAAACTGC+TGG + chr1_2:59652645-59652664 Msa0081120:intron 25.0%
! AATTACAATGACGTAAAGAT+CGG - chr1_2:59652682-59652701 None:intergenic 25.0%
!! ACTTTTCTTTTTAACAAGGT+CGG + chr1_2:59652745-59652764 Msa0081120:intron 25.0%
!! AGAAAACATTGAATGGTTTT+CGG + chr1_2:59653398-59653417 Msa0081120:CDS 25.0%
!!! AAGTTCAAAGTGATGTTTTT+TGG + chr1_2:59653495-59653514 Msa0081120:intron 25.0%
! ATAACAGTAATCAACATGAA+GGG - chr1_2:59653640-59653659 None:intergenic 25.0%
! AATAACAGTAATCAACATGA+AGG - chr1_2:59653641-59653660 None:intergenic 25.0%
!! TCATGTTGATTACTGTTATT+TGG + chr1_2:59653641-59653660 Msa0081120:intron 25.0%
!!! GGCATTTAAGTTTAAGATTT+TGG + chr1_2:59653705-59653724 Msa0081120:intron 25.0%
!!! AAATTTGGTGTCTACAAATT+TGG + chr1_2:59653733-59653752 Msa0081120:intron 25.0%
!!! AATTTGGTGTCTACAAATTT+GGG + chr1_2:59653734-59653753 Msa0081120:intron 25.0%
! TTAACAAAGCATGTTTATTC+TGG + chr1_2:59653786-59653805 Msa0081120:intron 25.0%
!! TGCCTGTTATATGTAAATTT+TGG + chr1_2:59653838-59653857 Msa0081120:intron 25.0%
! TGAATATCCTTATATCAAAC+AGG - chr1_2:59653868-59653887 None:intergenic 25.0%
! GTACGTTATTTAATCTGATT+TGG + chr1_2:59653931-59653950 Msa0081120:intron 25.0%
! TGTTTGTTTAAACAATGCAT+TGG + chr1_2:59653980-59653999 Msa0081120:intron 25.0%
! AGAGATAGAAGTAATTATAG+AGG + chr1_2:59654419-59654438 Msa0081120:CDS 25.0%
! AAGTAATTATAGAGGATCTA+GGG + chr1_2:59654427-59654446 Msa0081120:CDS 25.0%
! AGATTCGTTTGCTTTATATT+TGG + chr1_2:59654805-59654824 Msa0081120:intron 25.0%
! GATTCGTTTGCTTTATATTT+GGG + chr1_2:59654806-59654825 Msa0081120:intron 25.0%
! AAAAAGTCTGATATCAAATG+CGG - chr1_2:59655114-59655133 None:intergenic 25.0%
!! AATTGATTTAGTGTTTGTTG+GGG + chr1_2:59655158-59655177 Msa0081120:three_prime_UTR 25.0%
!! TATGATAGCTAATATTTCTG+TGG - chr1_2:59655296-59655315 None:intergenic 25.0%
TTGTAGAGTGAAAATGAAGT+TGG - chr1_2:59651136-59651155 None:intergenic 30.0%
AGACTAATTGACCTCATAAA+TGG + chr1_2:59651957-59651976 Msa0081120:CDS 30.0%
GACTAATTGACCTCATAAAT+GGG + chr1_2:59651958-59651977 Msa0081120:CDS 30.0%
! CAATCCATTGACTATTGATT+TGG + chr1_2:59652163-59652182 Msa0081120:CDS 30.0%
AACAAGACTCAAATAATTGG+GGG - chr1_2:59652305-59652324 None:intergenic 30.0%
CAACAAGACTCAAATAATTG+GGG - chr1_2:59652306-59652325 None:intergenic 30.0%
GTCAACAAGACTCAAATAAT+TGG - chr1_2:59652308-59652327 None:intergenic 30.0%
ATTACTAAGCAATGTTTGTG+TGG + chr1_2:59652417-59652436 Msa0081120:intron 30.0%
TTACTAAGCAATGTTTGTGT+GGG + chr1_2:59652418-59652437 Msa0081120:intron 30.0%
! AATAATCTAGTTTACAGCAG+CGG + chr1_2:59652485-59652504 Msa0081120:intron 30.0%
TATACATGCATATCATGTGA+TGG - chr1_2:59652551-59652570 None:intergenic 30.0%
AATCAATTGGAGAGAAATGA+AGG + chr1_2:59652570-59652589 Msa0081120:intron 30.0%
ATCAATTGGAGAGAAATGAA+GGG + chr1_2:59652571-59652590 Msa0081120:intron 30.0%
!!! TTGTTTTAATCGCCACAAAA+CGG + chr1_2:59652707-59652726 Msa0081120:intron 30.0%
!!! GAGGTTTTGTTTAGTAGTTA+TGG + chr1_2:59652926-59652945 Msa0081120:intron 30.0%
! TATCATTTTAAACAGTGAGC+AGG - chr1_2:59652961-59652980 None:intergenic 30.0%
TGTATTCAAGAGTAACTTGA+AGG - chr1_2:59653202-59653221 None:intergenic 30.0%
GTTACTCTTGAATACAAGAA+AGG + chr1_2:59653206-59653225 Msa0081120:intron 30.0%
! TTTTGTCCGTGTAAAAACAA+TGG - chr1_2:59653293-59653312 None:intergenic 30.0%
!!! TTGTTTTTACACGGACAAAA+AGG + chr1_2:59653293-59653312 Msa0081120:CDS 30.0%
!! TGTTTTTACACGGACAAAAA+GGG + chr1_2:59653294-59653313 Msa0081120:CDS 30.0%
! AGATATTCCCAATGTTGATT+TGG + chr1_2:59653471-59653490 Msa0081120:CDS 30.0%
GAACTTACCAAATCAACATT+GGG - chr1_2:59653481-59653500 None:intergenic 30.0%
TGAACTTACCAAATCAACAT+TGG - chr1_2:59653482-59653501 None:intergenic 30.0%
AAACATCTTATCTTCAGTCT+CGG + chr1_2:59653527-59653546 Msa0081120:intron 30.0%
CGTGATATATTATCTTCTCT+AGG + chr1_2:59653758-59653777 Msa0081120:intron 30.0%
AAGCATGTTTATTCTGGATA+AGG + chr1_2:59653792-59653811 Msa0081120:intron 30.0%
! GGATATAACAGTTCTTTTCT+GGG - chr1_2:59654300-59654319 None:intergenic 30.0%
! AGGATATAACAGTTCTTTTC+TGG - chr1_2:59654301-59654320 None:intergenic 30.0%
GAAGTAATTATAGAGGATCT+AGG + chr1_2:59654426-59654445 Msa0081120:CDS 30.0%
!! TAAGAGAAGTACCGTTAATT+GGG - chr1_2:59654931-59654950 None:intergenic 30.0%
! AGTTGGAACACATTCAATTT+TGG + chr1_2:59654950-59654969 Msa0081120:CDS 30.0%
TTCAATTTCTTGAACCACTT+AGG - chr1_2:59655015-59655034 None:intergenic 30.0%
AAGTGGTTCAAGAAATTGAA+AGG + chr1_2:59655015-59655034 Msa0081120:exon 30.0%
CTCTATGGAGATTACTAAAT+AGG - chr1_2:59655087-59655106 None:intergenic 30.0%
CTATTTAGTAATCTCCATAG+AGG + chr1_2:59655085-59655104 Msa0081120:three_prime_UTR 30.0%
AAAAGTCTGATATCAAATGC+GGG - chr1_2:59655113-59655132 None:intergenic 30.0%
! TAATATTTCTGTGGAGTGAA+TGG - chr1_2:59655287-59655306 None:intergenic 30.0%
! GAACTCTAAATTGTGACTTT+TGG + chr1_2:59655370-59655389 Msa0081120:three_prime_UTR 30.0%
!! CATACTTTGAAACAAACACA+TGG - chr1_2:59655425-59655444 None:intergenic 30.0%
!!! GAGAAGTTGGGTTTTGTTTA+TGG - chr1_2:59651107-59651126 None:intergenic 35.0%
! AGTTGGTGTATTGAGAAGTT+GGG - chr1_2:59651119-59651138 None:intergenic 35.0%
!! AAGTTGGTGTATTGAGAAGT+TGG - chr1_2:59651120-59651139 None:intergenic 35.0%
AAATAACGAAGGAAACTGTG+GGG - chr1_2:59651210-59651229 None:intergenic 35.0%
GAAATAACGAAGGAAACTGT+GGG - chr1_2:59651211-59651230 None:intergenic 35.0%
AGAAATAACGAAGGAAACTG+TGG - chr1_2:59651212-59651231 None:intergenic 35.0%
!! ATCAAGTTCGTTTTTGCTGA+CGG - chr1_2:59651335-59651354 None:intergenic 35.0%
GAACTTGATATTTCCAAGCT+TGG + chr1_2:59651346-59651365 Msa0081120:CDS 35.0%
TTGAAGTTGGATACCTGAAT+GGG - chr1_2:59651427-59651446 None:intergenic 35.0%
TATCTCTACCTTCTAATGCA+GGG - chr1_2:59651541-59651560 None:intergenic 35.0%
ATATCTCTACCTTCTAATGC+AGG - chr1_2:59651542-59651561 None:intergenic 35.0%
AGAATGACCAAAGCAATATG+AGG + chr1_2:59651633-59651652 Msa0081120:CDS 35.0%
!!! TTTCGGTGTTCTTTTATCTC+AGG + chr1_2:59651748-59651767 Msa0081120:intron 35.0%
AACACAGTTTGTGTTTATGG+TGG + chr1_2:59651867-59651886 Msa0081120:CDS 35.0%
! TTGCAGAGAAAAGCATAATC+TGG - chr1_2:59652100-59652119 None:intergenic 35.0%
CTCTATAGTCAACACACATT+GGG - chr1_2:59652262-59652281 None:intergenic 35.0%
ACTCTATAGTCAACACACAT+TGG - chr1_2:59652263-59652282 None:intergenic 35.0%
! TGTTGACTATAGAGTCAAAG+AGG + chr1_2:59652268-59652287 Msa0081120:intron 35.0%
ACAAGACTCAAATAATTGGG+GGG - chr1_2:59652304-59652323 None:intergenic 35.0%
TGACGTAAAACTCACCTAAA+TGG + chr1_2:59652324-59652343 Msa0081120:intron 35.0%
! TAAGCAAATTCCTGCCATTT+AGG - chr1_2:59652341-59652360 None:intergenic 35.0%
AGGGAAACCATTCATAGATT+TGG + chr1_2:59652590-59652609 Msa0081120:intron 35.0%
TCAAAGCGGAGAATTCTTTA+TGG + chr1_2:59652829-59652848 Msa0081120:CDS 35.0%
! ATCTACATTTTGCTTCTCTG+AGG + chr1_2:59652907-59652926 Msa0081120:intron 35.0%
AAAACTTCTTGTTCAGAAGC+AGG + chr1_2:59652989-59653008 Msa0081120:intron 35.0%
ATGGAGTTCGTTTAAACAGT+TGG - chr1_2:59653018-59653037 None:intergenic 35.0%
AACTGTTTAAACGAACTCCA+TGG + chr1_2:59653017-59653036 Msa0081120:intron 35.0%
TTTAAACGAACTCCATGGTT+TGG + chr1_2:59653022-59653041 Msa0081120:intron 35.0%
AATACCCTGACACAAACTTA+AGG + chr1_2:59653106-59653125 Msa0081120:intron 35.0%
!! AAGAGTAACTTGAAGGCATT+TGG - chr1_2:59653195-59653214 None:intergenic 35.0%
!!! GGAAGACCATTGTTTTTACA+CGG + chr1_2:59653284-59653303 Msa0081120:CDS 35.0%
ATAGCTTCTAAACCACTACA+TGG + chr1_2:59653352-59653371 Msa0081120:CDS 35.0%
CAGAGAGAGAAAACATTGAA+TGG + chr1_2:59653391-59653410 Msa0081120:CDS 35.0%
GAAGATAAGATGTTTGGACA+TGG - chr1_2:59653522-59653541 None:intergenic 35.0%
GAGACTGAAGATAAGATGTT+TGG - chr1_2:59653528-59653547 None:intergenic 35.0%
TTAATATGCAATGCCAACTG+AGG + chr1_2:59653603-59653622 Msa0081120:intron 35.0%
GTGACAGAGATTGAGTAATA+AGG - chr1_2:59653910-59653929 None:intergenic 35.0%
TTACCATCGGATGAGTTTAA+AGG + chr1_2:59654033-59654052 Msa0081120:intron 35.0%
AAACCTTTAAACTCATCCGA+TGG - chr1_2:59654039-59654058 None:intergenic 35.0%
AAAACATTGGAATGGCAACA+AGG - chr1_2:59654146-59654165 None:intergenic 35.0%
ATACATTATGAACTTCCCGA+TGG + chr1_2:59654194-59654213 Msa0081120:CDS 35.0%
CTTCTATCTCTATCAAGTGT+AGG - chr1_2:59654410-59654429 None:intergenic 35.0%
!!! GATCAAAGTGGTTTTAGAAC+CGG + chr1_2:59654449-59654468 Msa0081120:CDS 35.0%
!!! GATCAGAGAGGTTTTAAAAC+CGG + chr1_2:59654551-59654570 Msa0081120:CDS 35.0%
ATTTCTTGTTACCTCCTGTT+TGG - chr1_2:59654752-59654771 None:intergenic 35.0%
!! CTAAGAGAAGTACCGTTAAT+TGG - chr1_2:59654932-59654951 None:intergenic 35.0%
TTAACGGTACTTCTCTTAGT+TGG + chr1_2:59654933-59654952 Msa0081120:CDS 35.0%
CTTTGATGTGTAGTTCTTTC+GGG - chr1_2:59655046-59655065 None:intergenic 35.0%
GCTTTGATGTGTAGTTCTTT+CGG - chr1_2:59655047-59655066 None:intergenic 35.0%
! TAGAGTTCATTTTCGTACCA+CGG - chr1_2:59655358-59655377 None:intergenic 35.0%
! TTGCTTCATTAGAGAGTGTG+CGG + chr1_2:59651010-59651029 Msa0081120:five_prime_UTR 40.0%
GTTTATGGAAGAAGTTCCGA+TGG - chr1_2:59651092-59651111 None:intergenic 40.0%
AATAACGAAGGAAACTGTGG+GGG - chr1_2:59651209-59651228 None:intergenic 40.0%
GGCAATAGCAGAAATAACGA+AGG - chr1_2:59651221-59651240 None:intergenic 40.0%
ATCGAAAGCAAAACCCTTGA+AGG - chr1_2:59651278-59651297 None:intergenic 40.0%
!!! TACTAGTCTTTTCCCCATTC+AGG + chr1_2:59651411-59651430 Msa0081120:CDS 40.0%
TGAAGTTGGATACCTGAATG+GGG - chr1_2:59651426-59651445 None:intergenic 40.0%
GTTGAAGTTGGATACCTGAA+TGG - chr1_2:59651428-59651447 None:intergenic 40.0%
ACTGGGAAGACATTAGCATT+TGG + chr1_2:59651584-59651603 Msa0081120:CDS 40.0%
! TCAGTGAGACCCTTGATAAT+TGG - chr1_2:59651614-59651633 None:intergenic 40.0%
TGACCAAAGCAATATGAGGT+AGG + chr1_2:59651637-59651656 Msa0081120:intron 40.0%
TCACCTACCTCATATTGCTT+TGG - chr1_2:59651643-59651662 None:intergenic 40.0%
GTTAGCAAAGCAAGTAGAGA+AGG + chr1_2:59651818-59651837 Msa0081120:CDS 40.0%
TAAGGGTTCTCCCATTTATG+AGG - chr1_2:59651971-59651990 None:intergenic 40.0%
CAAGACTCAAATAATTGGGG+GGG - chr1_2:59652303-59652322 None:intergenic 40.0%
GTAAAACTCACCTAAATGGC+AGG + chr1_2:59652328-59652347 Msa0081120:intron 40.0%
!! AGAGAAGAAAAGCTTGCTGA+AGG + chr1_2:59652772-59652791 Msa0081120:CDS 40.0%
!! GAGAAGAAAAGCTTGCTGAA+GGG + chr1_2:59652773-59652792 Msa0081120:CDS 40.0%
!! CACAGTCTTAGCTTGTTGTT+TGG + chr1_2:59652881-59652900 Msa0081120:intron 40.0%
TATGCATGAATGCCAAACCA+TGG - chr1_2:59653037-59653056 None:intergenic 40.0%
ACAGCCTTAAGTTTGTGTCA+GGG - chr1_2:59653113-59653132 None:intergenic 40.0%
! GTCTTTTAGGCCTATGCAAA+TGG + chr1_2:59653259-59653278 Msa0081120:intron 40.0%
! TTTTAGGCCTATGCAAATGG+TGG + chr1_2:59653262-59653281 Msa0081120:intron 40.0%
TTTAGGCCTATGCAAATGGT+GGG + chr1_2:59653263-59653282 Msa0081120:intron 40.0%
TGAGAGATATCACCATGTAG+TGG - chr1_2:59653367-59653386 None:intergenic 40.0%
! ACATTGAATGGTTTTCGGCA+AGG + chr1_2:59653403-59653422 Msa0081120:CDS 40.0%
!! GGTTTTATCAAAGCCTCAGT+TGG - chr1_2:59653619-59653638 None:intergenic 40.0%
TGGATCGCCTGTTTGATATA+AGG + chr1_2:59653858-59653877 Msa0081120:intron 40.0%
TACAAAAGTCTCAGGACCAT+CGG - chr1_2:59654213-59654232 None:intergenic 40.0%
!! AACAGTTCTTTTCTGGGAAG+TGG - chr1_2:59654294-59654313 None:intergenic 40.0%
GATTCGGGTAAATCTTGCAT+AGG - chr1_2:59654368-59654387 None:intergenic 40.0%
ATTTACCCGAATCATCTACC+AGG + chr1_2:59654375-59654394 Msa0081120:CDS 40.0%
AACTTGCCTGGTAGATGATT+CGG - chr1_2:59654384-59654403 None:intergenic 40.0%
!!! AAAGTGGTTTTAGAACCGGT+GGG + chr1_2:59654453-59654472 Msa0081120:CDS 40.0%
AGACGAAGATCTGTTTGATG+AGG - chr1_2:59654519-59654538 None:intergenic 40.0%
TCAAACAGATCTTCGTCTTC+AGG + chr1_2:59654521-59654540 Msa0081120:CDS 40.0%
!!! AGAGAGGTTTTAAAACCGGT+GGG + chr1_2:59654555-59654574 Msa0081120:CDS 40.0%
!!! GAGAGAGGTTTTAAAACCAG+TGG + chr1_2:59654662-59654681 Msa0081120:CDS 40.0%
! TTAAAACCAGTGGTGATGAC+TGG + chr1_2:59654672-59654691 Msa0081120:CDS 40.0%
AATTAACCAGTCATCACCAC+TGG - chr1_2:59654681-59654700 None:intergenic 40.0%
! AGTGGTGATGACTGGTTAAT+TGG + chr1_2:59654680-59654699 Msa0081120:CDS 40.0%
ACAGATCTTCATCACCAAAC+AGG + chr1_2:59654735-59654754 Msa0081120:intron 40.0%
CATCTGAATGTTCATTGCAG+AGG + chr1_2:59654847-59654866 Msa0081120:intron 40.0%
GTTCATTGCAGAGGTAGTTA+TGG + chr1_2:59654856-59654875 Msa0081120:intron 40.0%
ATTGCAGAGGTAGTTATGGA+GGG + chr1_2:59654860-59654879 Msa0081120:intron 40.0%
TGGTTGTCCACAACTAAAAC+AGG - chr1_2:59654887-59654906 None:intergenic 40.0%
!!! TGTTTTAGTTGTGGACAACC+AGG + chr1_2:59654886-59654905 Msa0081120:CDS 40.0%
!!! GTTTTAGTTGTGGACAACCA+GGG + chr1_2:59654887-59654906 Msa0081120:CDS 40.0%
CGTCAGATTGTCCCAATTAA+CGG + chr1_2:59654917-59654936 Msa0081120:CDS 40.0%
TGCAGCTGAATTCTTGAACA+AGG - chr1_2:59654981-59655000 None:intergenic 40.0%
TTTGTTGGGGCAATGTTACT+CGG + chr1_2:59655171-59655190 Msa0081120:three_prime_UTR 40.0%
GCTGTCTTTCAGAAAAAGAC+AGG + chr1_2:59655234-59655253 Msa0081120:three_prime_UTR 40.0%
! AGAGTTCATTTTCGTACCAC+GGG - chr1_2:59655357-59655376 None:intergenic 40.0%
! CATTTGGGTTTGGTTTCGAG+AGG - chr1_2:59651062-59651081 None:intergenic 45.0%
CTCTCGAAACCAAACCCAAA+TGG + chr1_2:59651060-59651079 Msa0081120:exon 45.0%
! TGGAAGAAGCCATTTGGGTT+TGG - chr1_2:59651072-59651091 None:intergenic 45.0%
ACCCAAATGGCTTCTTCCAT+CGG + chr1_2:59651073-59651092 Msa0081120:exon 45.0%
TCCGATGGAAGAAGCCATTT+GGG - chr1_2:59651077-59651096 None:intergenic 45.0%
TTCCGATGGAAGAAGCCATT+TGG - chr1_2:59651078-59651097 None:intergenic 45.0%
! TTTTGTGGTTAGGACGGAGA+CGG - chr1_2:59651186-59651205 None:intergenic 45.0%
AACCCTTGAAGGCTTCTTGA+GGG - chr1_2:59651267-59651286 None:intergenic 45.0%
AAACCCTTGAAGGCTTCTTG+AGG - chr1_2:59651268-59651287 None:intergenic 45.0%
CAACGGGAACATGACTAAGT+TGG - chr1_2:59651312-59651331 None:intergenic 45.0%
!! TTCGTTTTTGCTGACGGCAA+CGG - chr1_2:59651329-59651348 None:intergenic 45.0%
CTGAGAAGGAAAACCAAGCT+TGG - chr1_2:59651362-59651381 None:intergenic 45.0%
AGTGAGTCAACAAGCTGAGA+AGG - chr1_2:59651376-59651395 None:intergenic 45.0%
! CGGTGTTCTTTTATCTCAGG+CGG + chr1_2:59651751-59651770 Msa0081120:intron 45.0%
! TTCTTTTATCTCAGGCGGTC+TGG + chr1_2:59651756-59651775 Msa0081120:intron 45.0%
TGCTTTGCTAACTCCCTAGT+TGG - chr1_2:59651810-59651829 None:intergenic 45.0%
CAGAGAAATGCACTTTCACG+TGG + chr1_2:59651906-59651925 Msa0081120:CDS 45.0%
!! TTCACGTGGTGTTGATGTTG+TGG + chr1_2:59651920-59651939 Msa0081120:CDS 45.0%
ATGTTGTGGTTGGAACACCT+GGG + chr1_2:59651934-59651953 Msa0081120:CDS 45.0%
! ATGAGGTCAATTAGTCTCCC+AGG - chr1_2:59651954-59651973 None:intergenic 45.0%
ACTCAAATAATTGGGGGGGT+AGG - chr1_2:59652299-59652318 None:intergenic 45.0%
! AGCACATCAACACCGTTTTG+TGG - chr1_2:59652722-59652741 None:intergenic 45.0%
CAGCCACTTCAACATCAAAG+CGG + chr1_2:59652815-59652834 Msa0081120:CDS 45.0%
TCTCCGCTTTGATGTTGAAG+TGG - chr1_2:59652821-59652840 None:intergenic 45.0%
GACAGCCTTAAGTTTGTGTC+AGG - chr1_2:59653114-59653133 None:intergenic 45.0%
TACACGGACAAAAAGGGATG+CGG + chr1_2:59653300-59653319 Msa0081120:CDS 45.0%
ACAAAAGTCTCAGGACCATC+GGG - chr1_2:59654212-59654231 None:intergenic 45.0%
GAGCGATGTACAAAAGTCTC+AGG - chr1_2:59654221-59654240 None:intergenic 45.0%
! GAGACTTTTGTACATCGCTC+TGG + chr1_2:59654221-59654240 Msa0081120:CDS 45.0%
ATATCCTTTGAGCGCGAAGT+AGG + chr1_2:59654314-59654333 Msa0081120:CDS 45.0%
GGTAAATCTTGCATAGGTGG+TGG - chr1_2:59654362-59654381 None:intergenic 45.0%
TCGGGTAAATCTTGCATAGG+TGG - chr1_2:59654365-59654384 None:intergenic 45.0%
ACTTGCCTGGTAGATGATTC+GGG - chr1_2:59654383-59654402 None:intergenic 45.0%
AAGTGTAGGAACAACTTGCC+TGG - chr1_2:59654396-59654415 None:intergenic 45.0%
AGAGGATCTAGGGATCAAAG+TGG + chr1_2:59654437-59654456 Msa0081120:CDS 45.0%
!!! CAAAGTGGTTTTAGAACCGG+TGG + chr1_2:59654452-59654471 Msa0081120:CDS 45.0%
!!! AAGTGGTTTTAGAACCGGTG+GGG + chr1_2:59654454-59654473 Msa0081120:CDS 45.0%
ATCTTCGTCTTCAGGCTCTA+GGG + chr1_2:59654529-59654548 Msa0081120:CDS 45.0%
!!! CAGAGAGGTTTTAAAACCGG+TGG + chr1_2:59654554-59654573 Msa0081120:CDS 45.0%
!!! GAGAGGTTTTAAAACCGGTG+GGG + chr1_2:59654556-59654575 Msa0081120:CDS 45.0%
AACAGATCTTCGTCGTCATC+AGG + chr1_2:59654632-59654651 Msa0081120:CDS 45.0%
TTCGTCGTCATCAGGTTCTA+GGG + chr1_2:59654640-59654659 Msa0081120:CDS 45.0%
! GGTGATGACTGGTTAATTGG+AGG + chr1_2:59654683-59654702 Msa0081120:CDS 45.0%
ATTGGAGGTAGACGATCAAG+CGG + chr1_2:59654698-59654717 Msa0081120:intron 45.0%
GATCTTCATCACCAAACAGG+AGG + chr1_2:59654738-59654757 Msa0081120:intron 45.0%
TTGGGTGTGCGTATAACTCA+TGG + chr1_2:59654824-59654843 Msa0081120:intron 45.0%
CATTGCAGAGGTAGTTATGG+AGG + chr1_2:59654859-59654878 Msa0081120:intron 45.0%
TTGCAGAGGTAGTTATGGAG+GGG + chr1_2:59654861-59654880 Msa0081120:intron 45.0%
AATTCAGCTGCATCCAGTGA+TGG + chr1_2:59654989-59655008 Msa0081120:CDS 45.0%
ATCAAATGCGGGAACCTCTA+TGG - chr1_2:59655102-59655121 None:intergenic 45.0%
! TTTCTGAAAGACAGCTGAGC+AGG - chr1_2:59655229-59655248 None:intergenic 45.0%
CTTTCAAACAAGCTTTCCCG+TGG + chr1_2:59655338-59655357 Msa0081120:three_prime_UTR 45.0%
ATACCTGCTCACTATGCACA+TGG + chr1_2:59655398-59655417 Msa0081120:three_prime_UTR 45.0%
!! AAAAAATAAAATAAAAACAT+TGG - chr1_2:59654159-59654178 None:intergenic 5.0%
! GGTTTGGTTTCGAGAGGAGA+AGG - chr1_2:59651056-59651075 None:intergenic 50.0%
!! AAGGGTGTTTAGACGGGAAG+TGG - chr1_2:59651161-59651180 None:intergenic 50.0%
!! ACGGAGAAGGGTGTTTAGAC+GGG - chr1_2:59651167-59651186 None:intergenic 50.0%
!! GACGGAGAAGGGTGTTTAGA+CGG - chr1_2:59651168-59651187 None:intergenic 50.0%
!! TGGGGGTTTTGTGGTTAGGA+CGG - chr1_2:59651192-59651211 None:intergenic 50.0%
!! ACTGTGGGGGTTTTGTGGTT+AGG - chr1_2:59651196-59651215 None:intergenic 50.0%
! AGGAAACTGTGGGGGTTTTG+TGG - chr1_2:59651201-59651220 None:intergenic 50.0%
ACCCCTCAAGAAGCCTTCAA+GGG + chr1_2:59651262-59651281 Msa0081120:CDS 50.0%
ACCCTTGAAGGCTTCTTGAG+GGG - chr1_2:59651266-59651285 None:intergenic 50.0%
!! TCGTTTTTGCTGACGGCAAC+GGG - chr1_2:59651328-59651347 None:intergenic 50.0%
! GTTGACTCACTTCAGAGACG+TGG + chr1_2:59651385-59651404 Msa0081120:CDS 50.0%
! GTGTTGCTCCCTGCATTAGA+AGG + chr1_2:59651530-59651549 Msa0081120:CDS 50.0%
ATCATTGCCCGTGCAAAGAC+CGG + chr1_2:59651560-59651579 Msa0081120:CDS 50.0%
TGCTAATGTCTTCCCAGTGC+CGG - chr1_2:59651582-59651601 None:intergenic 50.0%
TTTATCTCAGGCGGTCTGGT+CGG + chr1_2:59651760-59651779 Msa0081120:intron 50.0%
! TGGTCGGCTTCCTAAAGTAC+TGG + chr1_2:59651776-59651795 Msa0081120:CDS 50.0%
GGTGCAAGGACCAGTACTTT+AGG - chr1_2:59651789-59651808 None:intergenic 50.0%
TACTGGTCCTTGCACCAACT+AGG + chr1_2:59651793-59651812 Msa0081120:CDS 50.0%
ACTGGTCCTTGCACCAACTA+GGG + chr1_2:59651794-59651813 Msa0081120:CDS 50.0%
! CTAACTCCCTAGTTGGTGCA+AGG - chr1_2:59651803-59651822 None:intergenic 50.0%
!! CGTGGTGTTGATGTTGTGGT+TGG + chr1_2:59651924-59651943 Msa0081120:CDS 50.0%
GATGTTGTGGTTGGAACACC+TGG + chr1_2:59651933-59651952 Msa0081120:CDS 50.0%
!! CTGACCAGATGCTTGCTGTT+GGG + chr1_2:59652027-59652046 Msa0081120:CDS 50.0%
CAAACCCAACAGCAAGCATC+TGG - chr1_2:59652034-59652053 None:intergenic 50.0%
!! GATGCTTGCTGTTGGGTTTG+AGG + chr1_2:59652034-59652053 Msa0081120:CDS 50.0%
! GCATAATCTGGCGCTGAGAT+GGG - chr1_2:59652088-59652107 None:intergenic 50.0%
! AGCATAATCTGGCGCTGAGA+TGG - chr1_2:59652089-59652108 None:intergenic 50.0%
! GCTTTTCTCTGCAACCATGC+CGG + chr1_2:59652106-59652125 Msa0081120:CDS 50.0%
! CTTTTCTCTGCAACCATGCC+GGG + chr1_2:59652107-59652126 Msa0081120:CDS 50.0%
GACAACTTCTTGACCCAACC+CGG - chr1_2:59652128-59652147 None:intergenic 50.0%
GGTCTTCCCACCATTTGCAT+AGG - chr1_2:59653272-59653291 None:intergenic 50.0%
AAGCAACGTCGGTAGCAACA+AGG - chr1_2:59653441-59653460 None:intergenic 50.0%
TAGTCCACGAGAAGCAACGT+CGG - chr1_2:59653452-59653471 None:intergenic 50.0%
! CTTTTCCTGCACGTCCAGTA+CGG - chr1_2:59654247-59654266 None:intergenic 50.0%
ACTGGACGTGCAGGAAAAGA+AGG + chr1_2:59654248-59654267 Msa0081120:CDS 50.0%
GATCTTCGTCTTCAGGCTCT+AGG + chr1_2:59654528-59654547 Msa0081120:CDS 50.0%
TTAAAACCGGTGGGGATGAC+TGG + chr1_2:59654564-59654583 Msa0081120:CDS 50.0%
! GATGACTGGCTAACTGGAAC+TGG + chr1_2:59654578-59654597 Msa0081120:CDS 50.0%
CTTCGTCGTCATCAGGTTCT+AGG + chr1_2:59654639-59654658 Msa0081120:CDS 50.0%
!! TCATCAGGTTCTAGGGAGAG+AGG + chr1_2:59654647-59654666 Msa0081120:CDS 50.0%
TTGGAGGTAGACGATCAAGC+GGG + chr1_2:59654699-59654718 Msa0081120:intron 50.0%
TGAACCACTTAGGCCATCAC+TGG - chr1_2:59655005-59655024 None:intergenic 50.0%
AGGAGCGGCAAGGAAGGATA+AGG - chr1_2:59651036-59651055 None:intergenic 55.0%
GGTTTCGAGAGGAGAAGGAG+CGG - chr1_2:59651051-59651070 None:intergenic 55.0%
GTTAGGACGGAGACGGAGAA+GGG - chr1_2:59651179-59651198 None:intergenic 55.0%
GCTTCTTGAGGGGTGAGGAT+AGG - chr1_2:59651256-59651275 None:intergenic 55.0%
TGAAGGCTTCTTGAGGGGTG+AGG - chr1_2:59651261-59651280 None:intergenic 55.0%
CACCCCTCAAGAAGCCTTCA+AGG + chr1_2:59651261-59651280 Msa0081120:CDS 55.0%
!! GCTGACCAGATGCTTGCTGT+TGG + chr1_2:59652026-59652045 Msa0081120:CDS 55.0%
! AATCTGGCGCTGAGATGGGA+TGG - chr1_2:59652084-59652103 None:intergenic 55.0%
TTAGAACCGGTGGGGATGAC+TGG + chr1_2:59654462-59654481 Msa0081120:CDS 55.0%
ACTGGAGGTGGACGATCAAG+TGG + chr1_2:59654488-59654507 Msa0081120:CDS 55.0%
CTGGAGGTGGACGATCAAGT+GGG + chr1_2:59654489-59654508 Msa0081120:CDS 55.0%
!! TCAGGCTCTAGGGATCAGAG+AGG + chr1_2:59654539-59654558 Msa0081120:CDS 55.0%
AGTTAGCCAGTCATCCCCAC+CGG - chr1_2:59654573-59654592 None:intergenic 55.0%
! GACTGGCTAACTGGAACTGG+AGG + chr1_2:59654581-59654600 Msa0081120:CDS 55.0%
TGGCTAACTGGAACTGGAGG+TGG + chr1_2:59654584-59654603 Msa0081120:CDS 55.0%
ACTGGAGGTGGACGATCAAG+TGG + chr1_2:59654488-59654507 Msa0081120:CDS 55.0%
CTGGAGGTGGACGATCAAGT+GGG + chr1_2:59654489-59654508 Msa0081120:CDS 55.0%
!!! GGAGGGGCCTGTTTTAGTTG+TGG + chr1_2:59654877-59654896 Msa0081120:CDS 55.0%
GTTGTGGACAACCAGGGCAT+CGG + chr1_2:59654893-59654912 Msa0081120:CDS 55.0%
! TTGTGGACAACCAGGGCATC+GGG + chr1_2:59654894-59654913 Msa0081120:CDS 55.0%
GCATCCAGTGATGGCCTAAG+TGG + chr1_2:59654998-59655017 Msa0081120:CDS 55.0%
GGTCCATGTGCATAGTGAGC+AGG - chr1_2:59655404-59655423 None:intergenic 55.0%
AGGAGAAGGAGCGGCAAGGA+AGG - chr1_2:59651042-59651061 None:intergenic 60.0%
GGTTAGGACGGAGACGGAGA+AGG - chr1_2:59651180-59651199 None:intergenic 60.0%
!! GGTGAGGATAGGAGCGTTGG+GGG - chr1_2:59651245-59651264 None:intergenic 60.0%
!! GGGTGAGGATAGGAGCGTTG+GGG - chr1_2:59651246-59651265 None:intergenic 60.0%
!! GGGGTGAGGATAGGAGCGTT+GGG - chr1_2:59651247-59651266 None:intergenic 60.0%
! AGGGGTGAGGATAGGAGCGT+TGG - chr1_2:59651248-59651267 None:intergenic 60.0%
!! TCCCAGTGCCGGTCTTTGCA+CGG - chr1_2:59651571-59651590 None:intergenic 60.0%
TCTCTGCAACCATGCCGGGT+TGG + chr1_2:59652111-59652130 Msa0081120:CDS 60.0%
CTCTGCAACCATGCCGGGTT+GGG + chr1_2:59652112-59652131 Msa0081120:CDS 60.0%
CTTCTTGACCCAACCCGGCA+TGG - chr1_2:59652123-59652142 None:intergenic 60.0%
GCTACCGACGTTGCTTCTCG+TGG + chr1_2:59653445-59653464 Msa0081120:CDS 60.0%
GTACATCGCTCTGGCCGTAC+TGG + chr1_2:59654230-59654249 Msa0081120:CDS 60.0%
GCAGCCTACTTCGCGCTCAA+AGG - chr1_2:59654321-59654340 None:intergenic 60.0%
AGTTCGCCAGTCATCCCCAC+CGG - chr1_2:59654471-59654490 None:intergenic 60.0%
GATGACTGGCGAACTGGAGG+TGG + chr1_2:59654476-59654495 Msa0081120:CDS 60.0%
! GGTGGGGATGACTGGCTAAC+TGG + chr1_2:59654572-59654591 Msa0081120:CDS 60.0%
CGAGAGGAGAAGGAGCGGCA+AGG - chr1_2:59651046-59651065 None:intergenic 65.0%
!! GAGGATAGGAGCGTTGGGGG+TGG - chr1_2:59651242-59651261 None:intergenic 65.0%
!! CCCAGTGCCGGTCTTTGCAC+GGG - chr1_2:59651570-59651589 None:intergenic 65.0%
CCCGTGCAAAGACCGGCACT+GGG + chr1_2:59651567-59651586 Msa0081120:CDS 65.0%
TCTGGCCGTACTGGACGTGC+AGG + chr1_2:59654239-59654258 Msa0081120:CDS 65.0%
GGTGGGGATGACTGGCGAAC+TGG + chr1_2:59654470-59654489 Msa0081120:CDS 65.0%
GGGGATGACTGGCGAACTGG+AGG + chr1_2:59654473-59654492 Msa0081120:CDS 65.0%
CAATCTGACGCCCGATGCCC+TGG - chr1_2:59654907-59654926 None:intergenic 65.0%
GCCCGTGCAAAGACCGGCAC+TGG + chr1_2:59651566-59651585 Msa0081120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59650994 59655459 59650994 ID=Msa0081120;Name=Msa0081120
chr1_2 mRNA 59650994 59655459 59650994 ID=Msa0081120-mRNA-1;Parent=Msa0081120;Name=Msa0081120-mRNA-1;_AED=0.02;_eAED=0.07;_QI=85|0.83|0.85|1|1|1|7|426|634
chr1_2 exon 59650994 59651432 59650994 ID=Msa0081120-mRNA-1:exon:19285;Parent=Msa0081120-mRNA-1
chr1_2 exon 59651524 59651654 59651524 ID=Msa0081120-mRNA-1:exon:19286;Parent=Msa0081120-mRNA-1
chr1_2 exon 59651770 59652184 59651770 ID=Msa0081120-mRNA-1:exon:19287;Parent=Msa0081120-mRNA-1
chr1_2 exon 59652763 59652861 59652763 ID=Msa0081120-mRNA-1:exon:19288;Parent=Msa0081120-mRNA-1
chr1_2 exon 59653268 59653492 59653268 ID=Msa0081120-mRNA-1:exon:19289;Parent=Msa0081120-mRNA-1
chr1_2 exon 59654191 59654704 59654191 ID=Msa0081120-mRNA-1:exon:19290;Parent=Msa0081120-mRNA-1
chr1_2 exon 59654867 59655459 59654867 ID=Msa0081120-mRNA-1:exon:19291;Parent=Msa0081120-mRNA-1
chr1_2 five_prime_UTR 59650994 59651078 59650994 ID=Msa0081120-mRNA-1:five_prime_utr;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59651079 59651432 59651079 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59651524 59651654 59651524 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59651770 59652184 59651770 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59652763 59652861 59652763 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59653268 59653492 59653268 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59654191 59654704 59654191 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 CDS 59654867 59655033 59654867 ID=Msa0081120-mRNA-1:cds;Parent=Msa0081120-mRNA-1
chr1_2 three_prime_UTR 59655034 59655459 59655034 ID=Msa0081120-mRNA-1:three_prime_utr;Parent=Msa0081120-mRNA-1
Gene Sequence

>Msa0081120

ATGGCTTCTTCCATCGGAACTTCTTCCATAAACAAAACCCAACTTCTCAATACACCAACTTCATTTTCACTCTACAACACCACTTCCCGTCTAAACACCCTTCTCCGTCTCCGTCCTAACCACAAAACCCCCACAGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACGCTCCTATCCTCACCCCTCAAGAAGCCTTCAAGGGTTTTGCTTTCGATGACACTAATGACCAACTTAGTCATGTTCCCGTTGCCGTCAGCAAAAACGAACTTGATATTTCCAAGCTTGGTTTTCCTTCTCAGCTTGTTGACTCACTTCAGAGACGTGGAATTACTAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTCCCTGCATTAGAAGGTAGAGATATCATTGCCCGTGCAAAGACCGGCACTGGGAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCACTGAGAATGACCAAAGCAATATGAGGCGGTCTGGTCGGCTTCCTAAAGTACTGGTCCTTGCACCAACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGAAATGCACTTTCACGTGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACCTCATAAATGGGAGAACCCTTAAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGACCAGATGCTTGCTGTTGGGTTTGAGGAGAATGTCGAAGAAATTTTAGAAACCATCCCATCTCAGCGCCAGATTATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCATTGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTTCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGCAAATGGTGGGAAGACCATTGTTTTTACACGGACAAAAAGGGATGCGGATGAAATATCATTGTCACTAACAAATAGCATAGCTTCTAAACCACTACATGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTCCTTGTTGCTACCGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGACGTGCAGGAAAAGAAGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTGTTATATCCTTTGAGCGCGAAGTAGGCTGCACGTTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCAGGCAAGTTGTTCCTACACTTGATAGAGATAGAAGTAATTATAGAGGATCTAGGGATCAAAGTGGTTTTAGAACCGGTGGGGATGACTGGCGAACTGGAGGTGGACGATCAAGTGGGTATTCCTCATCAAACAGATCTTCGTCTTCAGGCTCTAGGGATCAGAGAGGTTTTAAAACCGGTGGGGATGACTGGCTAACTGGAACTGGAGGTGGACGATCAAGTGGGTATTCATCATCAAACAGATCTTCGTCGTCATCAGGTTCTAGGGAGAGAGGTTTTAAAACCAGTGGTGATGACTGGTTAATTGGAGAGGTAGTTATGGAGGGGCCTGTTTTAGTTGTGGACAACCAGGGCATCGGGCGTCAGATTGTCCCAATTAACGGTACTTCTCTTAGTTGGAACACATTCAATTTTGGCGTCACCTTGTTCAAGAATTCAGCTGCATCCAGTGATGGCCTAAGTGGTTCAAGAAATTGA
Protein sequence

>Msa0081120

MASSIGTSSINKTQLLNTPTSFSLYNTTSRLNTLLRLRPNHKTPTVSFVISAIATPNAPILTPQEAFKGFAFDDTNDQLSHVPVAVSKNELDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKGLTENDQSNMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGRTLKLSEIQYLVLDEADQMLAVGFEENVEEILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVISFEREVGCTFEFISPPPMQDLPESSTRQVVPTLDRDRSNYRGSRDQSGFRTGGDDWRTGGGRSSGYSSSNRSSSSGSRDQRGFKTGGDDWLTGTGGGRSSGYSSSNRSSSSSGSRERGFKTSGDDWLIGEVVMEGPVLVVDNQGIGRQIVPINGTSLSWNTFNFGVTLFKNSAASSDGLSGSRN*