Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170080 | sp|Q8S403|PHO1_ARATH | 54.167 | 312 | 119 | 7 | 1 | 295 | 1 | 305 | 5.63e-87 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170080 | A0A396JVW9 | 96.949 | 295 | 9 | 0 | 1 | 295 | 54 | 348 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0170080 | 0.812057 | 5.134526e-51 | -8.615850e-47 |
| Msa0017710 | Msa0170080 | 0.803658 | 3.137901e-49 | -8.615850e-47 |
| Msa0024650 | Msa0170080 | 0.803061 | 4.172904e-49 | -8.615850e-47 |
| Msa0030090 | Msa0170080 | 0.997166 | 6.066330e-238 | -8.615850e-47 |
| Msa0065520 | Msa0170080 | -0.804819 | 1.799071e-49 | -8.615850e-47 |
| Msa0072180 | Msa0170080 | 0.802502 | 5.442952e-49 | -8.615850e-47 |
| Msa0081120 | Msa0170080 | -0.826953 | 2.044100e-54 | -8.615850e-47 |
| Msa0106540 | Msa0170080 | 0.801884 | 7.294459e-49 | -8.615850e-47 |
| Msa0120450 | Msa0170080 | 0.827753 | 1.314279e-54 | -8.615850e-47 |
| Msa0125600 | Msa0170080 | 0.887620 | 1.215579e-72 | -8.615850e-47 |
| Msa0170080 | Msa0220090 | 0.812047 | 5.159476e-51 | -8.615850e-47 |
| Msa0170080 | Msa0269240 | 0.894098 | 3.393528e-75 | -8.615850e-47 |
| Msa0170080 | Msa0279810 | 0.838700 | 2.461488e-57 | -8.615850e-47 |
| Msa0170080 | Msa0299030 | 0.805797 | 1.122020e-49 | -8.615850e-47 |
| Msa0170080 | Msa0319220 | 0.834433 | 3.005865e-56 | -8.615850e-47 |
| Msa0170080 | Msa0354600 | 0.810863 | 9.328178e-51 | -8.615850e-47 |
| Msa0170080 | Msa0371510 | 0.801852 | 7.404930e-49 | -8.615850e-47 |
| Msa0170080 | Msa0382460 | 0.807380 | 5.200625e-50 | -8.615850e-47 |
| Msa0170080 | Msa0396860 | 0.802890 | 4.526893e-49 | -8.615850e-47 |
| Msa0170080 | Msa0423220 | 0.809527 | 1.810687e-50 | -8.615850e-47 |
| Msa0170080 | Msa0454160 | 0.802470 | 5.525637e-49 | -8.615850e-47 |
| Msa0170080 | Msa0471390 | 0.800777 | 1.229272e-48 | -8.615850e-47 |
| Msa0170080 | Msa0502970 | 0.810416 | 1.165298e-50 | -8.615850e-47 |
| Msa0170080 | Msa0553090 | 0.820320 | 7.298412e-53 | -8.615850e-47 |
| Msa0170080 | Msa0575380 | 0.809277 | 2.049108e-50 | -8.615850e-47 |
| Msa0170080 | Msa0606470 | 0.815269 | 1.008076e-51 | -8.615850e-47 |
| Msa0170080 | Msa0608780 | -0.820230 | 7.654317e-53 | -8.615850e-47 |
| Msa0170080 | Msa0629160 | 0.806185 | 9.301746e-50 | -8.615850e-47 |
| Msa0170080 | Msa0649250 | -0.811021 | 8.624139e-51 | -8.615850e-47 |
| Msa0170080 | Msa0690190 | 0.802445 | 5.590336e-49 | -8.615850e-47 |
| Msa0170080 | Msa0732970 | 0.805218 | 1.484283e-49 | -8.615850e-47 |
| Msa0170080 | Msa0733560 | 0.808623 | 2.827273e-50 | -8.615850e-47 |
| Msa0170080 | Msa0773960 | 0.808654 | 2.784413e-50 | -8.615850e-47 |
| Msa0170080 | Msa0774660 | 0.803556 | 3.295319e-49 | -8.615850e-47 |
| Msa0170080 | Msa0823310 | -0.811818 | 5.788651e-51 | -8.615850e-47 |
| Msa0170080 | Msa0838210 | 0.817628 | 2.988280e-52 | -8.615850e-47 |
| Msa0170080 | Msa0839040 | 0.810400 | 1.174474e-50 | -8.615850e-47 |
| Msa0170080 | Msa0852490 | 0.810666 | 1.028967e-50 | -8.615850e-47 |
| Msa0170080 | Msa0973010 | -0.807721 | 4.400551e-50 | -8.615850e-47 |
| Msa0170080 | Msa1002820 | 0.802836 | 4.644559e-49 | -8.615850e-47 |
| Msa0170080 | Msa1029780 | 0.802007 | 6.879733e-49 | -8.615850e-47 |
| Msa0170080 | Msa1029860 | 0.811978 | 5.341349e-51 | -8.615850e-47 |
| Msa0170080 | Msa1068780 | 0.814313 | 1.642045e-51 | -8.615850e-47 |
| Msa0170080 | Msa1069350 | 0.806714 | 7.192976e-50 | -8.615850e-47 |
| Msa0170080 | Msa1078120 | -0.800242 | 1.579733e-48 | -8.615850e-47 |
| Msa0170080 | Msa1108560 | 0.807907 | 4.018081e-50 | -8.615850e-47 |
| Msa0170080 | Msa1147010 | 0.804163 | 2.464316e-49 | -8.615850e-47 |
| Msa0170080 | Msa1156740 | 0.821814 | 3.304496e-53 | -8.615850e-47 |
| Msa0170080 | Msa1157210 | 0.805338 | 1.400728e-49 | -8.615850e-47 |
| Msa0170080 | Msa1215220 | -0.818342 | 2.060729e-52 | -8.615850e-47 |
| Msa0170080 | Msa1223960 | 0.805625 | 1.219346e-49 | -8.615850e-47 |
| Msa0170080 | Msa1223990 | 0.809640 | 1.712543e-50 | -8.615850e-47 |
| Msa0170080 | Msa1228460 | -0.811047 | 8.508863e-51 | -8.615850e-47 |
| Msa0170080 | Msa1255020 | -0.816799 | 4.590252e-52 | -8.615850e-47 |
| Msa0170080 | Msa1263110 | 0.814719 | 1.334923e-51 | -8.615850e-47 |
| Msa0170080 | Msa1295470 | -0.814358 | 1.604477e-51 | -8.615850e-47 |
| Msa0170080 | Msa1311370 | 0.802692 | 4.972523e-49 | -8.615850e-47 |
| Msa0170080 | Msa1377230 | 0.816885 | 4.391090e-52 | -8.615850e-47 |
| Msa0170080 | Msa1387480 | 0.903663 | 2.748684e-79 | -8.615850e-47 |
| Msa0170080 | Msa1400300 | 0.804567 | 2.030423e-49 | -8.615850e-47 |
| Msa0170080 | Msa1405830 | 0.801330 | 9.475120e-49 | -8.615850e-47 |
| Msa0170080 | Msa1441450 | 0.904140 | 1.674181e-79 | -8.615850e-47 |
| Msa0170080 | Msa1455360 | 0.800609 | 1.329889e-48 | -8.615850e-47 |
| Msa0170080 | Msa1458270 | 0.811514 | 6.739642e-51 | -8.615850e-47 |
| Msa0170080 | Msa1466130 | 0.848190 | 7.176331e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170080 | MtrunA17_Chr1g0187381 | 96.949 | 295 | 9 | 0 | 1 | 295 | 54 | 348 | 0.0 | 591 |
| Msa0170080 | MtrunA17_Chr1g0166651 | 64.452 | 301 | 96 | 4 | 1 | 295 | 1 | 296 | 2.14e-117 | 355 |
| Msa0170080 | MtrunA17_Chr8g0368741 | 36.025 | 322 | 161 | 11 | 1 | 296 | 1 | 303 | 1.96e-46 | 166 |
| Msa0170080 | MtrunA17_Chr7g0217831 | 27.869 | 305 | 196 | 10 | 2 | 295 | 1 | 292 | 3.30e-14 | 72.4 |
| Msa0170080 | MtrunA17_Chr7g0217791 | 32.692 | 156 | 89 | 5 | 2 | 147 | 1 | 150 | 1.73e-12 | 65.1 |
| Msa0170080 | MtrunA17_Chr2g0302531 | 27.483 | 302 | 202 | 10 | 2 | 295 | 1 | 293 | 2.11e-12 | 67.4 |
| Msa0170080 | MtrunA17_Chr7g0217801 | 26.230 | 305 | 205 | 11 | 2 | 295 | 1 | 296 | 4.13e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170080 | AT3G23430.1 | 54.167 | 312 | 119 | 7 | 1 | 295 | 1 | 305 | 5.72e-88 | 279 |
| Msa0170080 | AT1G68740.2 | 34.796 | 319 | 173 | 12 | 1 | 296 | 1 | 307 | 2.00e-37 | 141 |
| Msa0170080 | AT1G68740.1 | 33.856 | 319 | 176 | 11 | 1 | 296 | 1 | 307 | 3.30e-37 | 140 |
| Msa0170080 | AT1G14040.1 | 31.056 | 161 | 96 | 4 | 2 | 147 | 1 | 161 | 1.39e-11 | 65.5 |
| Msa0170080 | AT1G35350.1 | 27.181 | 298 | 185 | 11 | 2 | 295 | 1 | 270 | 4.96e-11 | 63.9 |
Find 53 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCTCATTGCCATTCT+AGG | 0.174578 | 1_4:-53735462 | None:intergenic |
| TCTCTTGTTTAATGTAAAAT+TGG | 0.199156 | 1_4:-53734770 | None:intergenic |
| CTCCTCCTTCGGCGTGGTTA+TGG | 0.243700 | 1_4:-53732730 | None:intergenic |
| TTGGCTTACTCAAAACTTAT+AGG | 0.246252 | 1_4:+53735643 | Msa0170080:CDS |
| CGGGATTCTGATTATTCATT+AGG | 0.249123 | 1_4:+53734936 | Msa0170080:CDS |
| TATCATTTATAATTTGCTTT+AGG | 0.270894 | 1_4:-53734848 | None:intergenic |
| ATGTTATCATGATCAGATTC+AGG | 0.293820 | 1_4:-53732809 | None:intergenic |
| TCTGTATTATTTGCCTTTGT+TGG | 0.332893 | 1_4:-53734891 | None:intergenic |
| GCTTAATTTGCAGAATGTTT+AGG | 0.332993 | 1_4:+53735321 | Msa0170080:intron |
| CAGCTATTACTAGCATGCTT+TGG | 0.334532 | 1_4:+53735517 | Msa0170080:CDS |
| AAAGCAAAGAGAATTGAAAA+TGG | 0.340353 | 1_4:-53732756 | None:intergenic |
| TGATAACATAAATATCATTA+AGG | 0.344335 | 1_4:+53732823 | Msa0170080:CDS |
| GTGGAGCTCTATAGAGGCCT+TGG | 0.346019 | 1_4:+53735624 | Msa0170080:CDS |
| GCTCGAGTTGCATTTGTTCC+AGG | 0.348462 | 1_4:-53735489 | None:intergenic |
| TGCAGAATGTTTAGGAGATT+CGG | 0.369539 | 1_4:+53735329 | Msa0170080:intron |
| AGCTATTACTAGCATGCTTT+GGG | 0.372445 | 1_4:+53735518 | Msa0170080:CDS |
| ACGAATGCCTCCTTCCATTC+TGG | 0.378946 | 1_4:-53732644 | None:intergenic |
| GTGAGGAAGAAAACCATAAA+AGG | 0.387305 | 1_4:+53734537 | Msa0170080:CDS |
| ATAATTGTACAAGCTCTGTT+TGG | 0.426330 | 1_4:-53734578 | None:intergenic |
| AGGAGGCATTCGTGAACTAT+TGG | 0.429457 | 1_4:+53732654 | Msa0170080:CDS |
| CAGATTCAGGTGAGAGCTTG+AGG | 0.442326 | 1_4:-53732796 | None:intergenic |
| GTATTATTTGCCTTTGTTGG+CGG | 0.447529 | 1_4:-53734888 | None:intergenic |
| CTCGAGTTGCATTTGTTCCA+GGG | 0.472618 | 1_4:-53735488 | None:intergenic |
| GAAAATGGAACCTCCTCCTT+CGG | 0.473857 | 1_4:-53732741 | None:intergenic |
| AGAGAAGAAAAGTGGGAATG+AGG | 0.506066 | 1_4:-53732542 | None:intergenic |
| TATATATAGAGAAGAAAAGT+GGG | 0.519157 | 1_4:-53732549 | None:intergenic |
| GATTTAGTGAACAATCCAAC+AGG | 0.519226 | 1_4:+53735543 | Msa0170080:CDS |
| AAAGAAAGGAAAGCCTAGAA+TGG | 0.527856 | 1_4:+53735449 | Msa0170080:CDS |
| AGAAATTTCACATACAGAAG+AGG | 0.536149 | 1_4:+53735365 | Msa0170080:CDS |
| TTGTGAATGAAATCTCCTGT+TGG | 0.543831 | 1_4:-53735558 | None:intergenic |
| ATATATATAGAGAAGAAAAG+TGG | 0.546538 | 1_4:-53732550 | None:intergenic |
| AAGAAAACCATAAAAGGCAG+TGG | 0.550274 | 1_4:+53734543 | Msa0170080:CDS |
| TATTACTAGCATGCTTTGGG+AGG | 0.550285 | 1_4:+53735521 | Msa0170080:CDS |
| GGGAATGAGGTTATATGAAG+TGG | 0.556456 | 1_4:-53732529 | None:intergenic |
| CTTTCCCGCGTTCTCCAGCA+CGG | 0.563353 | 1_4:+53734916 | Msa0170080:CDS |
| CATAACCACGCCGAAGGAGG+AGG | 0.563418 | 1_4:+53732731 | Msa0170080:CDS |
| AAGCTCAACTCATACCAGAA+TGG | 0.565158 | 1_4:+53732630 | Msa0170080:CDS |
| GAATAATCAGAATCCCGTGC+TGG | 0.569715 | 1_4:-53734930 | None:intergenic |
| GAGAATGAATTCATTGAGAG+AGG | 0.576531 | 1_4:+53734789 | Msa0170080:CDS |
| AGATTCAGGTGAGAGCTTGA+GGG | 0.580711 | 1_4:-53732795 | None:intergenic |
| TCAACTCATACCAGAATGGA+AGG | 0.589083 | 1_4:+53732634 | Msa0170080:CDS |
| CAAAACCATAACCACGCCGA+AGG | 0.591766 | 1_4:+53732725 | Msa0170080:CDS |
| TTTCCCGCGTTCTCCAGCAC+GGG | 0.592357 | 1_4:+53734917 | Msa0170080:CDS |
| AACCATAACCACGCCGAAGG+AGG | 0.596363 | 1_4:+53732728 | Msa0170080:CDS |
| AGAAATGGTGAAATTCTCAA+AGG | 0.597216 | 1_4:+53732601 | Msa0170080:exon |
| ATTTCGTGAATTCAGCAATG+AGG | 0.610454 | 1_4:+53735418 | Msa0170080:CDS |
| GAATCCCGTGCTGGAGAACG+CGG | 0.615381 | 1_4:-53734921 | None:intergenic |
| GCAATGAGAATTGATGTCCC+TGG | 0.637981 | 1_4:+53735471 | Msa0170080:CDS |
| AATCCCGTGCTGGAGAACGC+GGG | 0.646988 | 1_4:-53734920 | None:intergenic |
| AAATTATAAATGATAGACGA+AGG | 0.670723 | 1_4:+53734856 | Msa0170080:CDS |
| TGGAACCTCCTCCTTCGGCG+TGG | 0.689910 | 1_4:-53732736 | None:intergenic |
| ACTCATACCAGAATGGAAGG+AGG | 0.716098 | 1_4:+53732637 | Msa0170080:CDS |
| GCTTGATGATGAGCTAAACA+AGG | 0.730559 | 1_4:+53734743 | Msa0170080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAATCATTTACTAA+TGG | + | chr1_4:53733634-53733653 | Msa0170080:intron | 10.0% |
| !! | AATATAAATCATTTACTAAT+GGG | + | chr1_4:53733635-53733654 | Msa0170080:intron | 10.0% |
| !!! | TATTACATTTTTTTTAAAGT+AGG | - | chr1_4:53734069-53734088 | None:intergenic | 10.0% |
| !! | AAAATATGAATATCAAAATA+TGG | + | chr1_4:53734458-53734477 | Msa0170080:intron | 10.0% |
| !!! | AATATGAATATTTTTCTAAT+TGG | + | chr1_4:53734509-53734528 | Msa0170080:intron | 10.0% |
| !! | TGATAACATAAATATCATTA+AGG | + | chr1_4:53732823-53732842 | Msa0170080:CDS | 15.0% |
| !! | TATTGAGAAATATTAATTTC+TGG | + | chr1_4:53732873-53732892 | Msa0170080:intron | 15.0% |
| !! | AAAAAAATGATAATAATTGG+TGG | - | chr1_4:53733500-53733519 | None:intergenic | 15.0% |
| !! | CGTAAAAAAATGATAATAAT+TGG | - | chr1_4:53733503-53733522 | None:intergenic | 15.0% |
| !!! | CCTATACTATATTATAATTT+TGG | - | chr1_4:53733674-53733693 | None:intergenic | 15.0% |
| !! | CCAAAATTATAATATAGTAT+AGG | + | chr1_4:53733671-53733690 | Msa0170080:intron | 15.0% |
| !! | AATTTGATTATATTTCATTG+TGG | + | chr1_4:53733879-53733898 | Msa0170080:intron | 15.0% |
| !!! | ATTTTCGACAATAATTAAAA+TGG | - | chr1_4:53734012-53734031 | None:intergenic | 15.0% |
| !!! | GACATTATTATTCTTTAAAA+TGG | - | chr1_4:53734040-53734059 | None:intergenic | 15.0% |
| !!! | TGATTAATATTTTTATCAAG+TGG | + | chr1_4:53734130-53734149 | Msa0170080:intron | 15.0% |
| !!! | GATTAATATTTTTATCAAGT+GGG | + | chr1_4:53734131-53734150 | Msa0170080:intron | 15.0% |
| !!! | ATTAATATTTTTATCAAGTG+GGG | + | chr1_4:53734132-53734151 | Msa0170080:intron | 15.0% |
| !!! | TATCATTTATAATTTGCTTT+AGG | - | chr1_4:53734851-53734870 | None:intergenic | 15.0% |
| !!! | ATAATATGATAAGTTCTAAA+AGG | + | chr1_4:53735179-53735198 | Msa0170080:intron | 15.0% |
| !! | AATAATATGGAAATCAAAAA+AGG | - | chr1_4:53735285-53735304 | None:intergenic | 15.0% |
| !! | TATATATAGAGAAGAAAAGT+GGG | - | chr1_4:53732552-53732571 | None:intergenic | 20.0% |
| !! | ATATATATAGAGAAGAAAAG+TGG | - | chr1_4:53732553-53732572 | None:intergenic | 20.0% |
| !!! | TTCTATATTTTGTCACATAA+TGG | + | chr1_4:53732959-53732978 | Msa0170080:intron | 20.0% |
| !!! | GTATGATAATGCTATATATA+TGG | - | chr1_4:53733061-53733080 | None:intergenic | 20.0% |
| !! | ATTCAAATTTCATTAGTTAG+AGG | - | chr1_4:53733101-53733120 | None:intergenic | 20.0% |
| !! | AACTAATGAAATTTGAATCA+TGG | + | chr1_4:53733103-53733122 | Msa0170080:intron | 20.0% |
| !! | ACAATATAATTACGTATGTA+TGG | - | chr1_4:53733338-53733357 | None:intergenic | 20.0% |
| !!! | TCATTAATTTTAATTAGCCA+AGG | + | chr1_4:53733450-53733469 | Msa0170080:intron | 20.0% |
| !! | AATGAATTGAAAATAATCCT+TGG | - | chr1_4:53733470-53733489 | None:intergenic | 20.0% |
| !! | TGATATTATGTTAATACGAT+TGG | - | chr1_4:53733756-53733775 | None:intergenic | 20.0% |
| !! | AAAAATTATTCCTTCATTCT+TGG | - | chr1_4:53733793-53733812 | None:intergenic | 20.0% |
| !! | AATTATATCTTCATTCTTAG+AGG | - | chr1_4:53733863-53733882 | None:intergenic | 20.0% |
| !! | CAAAAAAAGTAAGGAAAAAA+AGG | - | chr1_4:53734204-53734223 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTACTTTTTTTG+TGG | + | chr1_4:53734204-53734223 | Msa0170080:intron | 20.0% |
| !!! | TTTTTCCTTACTTTTTTTGT+GGG | + | chr1_4:53734205-53734224 | Msa0170080:intron | 20.0% |
| !!! | AATATTTTTCTAATTGGTGT+AGG | + | chr1_4:53734515-53734534 | Msa0170080:intron | 20.0% |
| !!! | TCTCTTGTTTAATGTAAAAT+TGG | - | chr1_4:53734773-53734792 | None:intergenic | 20.0% |
| !! | AAATTATAAATGATAGACGA+AGG | + | chr1_4:53734856-53734875 | Msa0170080:CDS | 20.0% |
| !! | CCATTCATACTTAAATAATA+TGG | - | chr1_4:53735298-53735317 | None:intergenic | 20.0% |
| !! | CCATATTATTTAAGTATGAA+TGG | + | chr1_4:53735295-53735314 | Msa0170080:intron | 20.0% |
| !! | TTTCTTTTTCTATATGGTGA+AGG | - | chr1_4:53732586-53732605 | None:intergenic | 25.0% |
| ! | TCACCATATAGAAAAAGAAA+TGG | + | chr1_4:53732586-53732605 | Msa0170080:exon | 25.0% |
| !! | TCACCATTTCTTTTTCTATA+TGG | - | chr1_4:53732592-53732611 | None:intergenic | 25.0% |
| ! | AAAGCAAAGAGAATTGAAAA+TGG | - | chr1_4:53732759-53732778 | None:intergenic | 25.0% |
| ! | ATTTCATTAGTTAGAGGATA+AGG | - | chr1_4:53733095-53733114 | None:intergenic | 25.0% |
| ! | AATGAAATTTGAATCATGGT+TGG | + | chr1_4:53733107-53733126 | Msa0170080:intron | 25.0% |
| !! | CTACTATTTGTGTTTCTATA+TGG | - | chr1_4:53733133-53733152 | None:intergenic | 25.0% |
| !! | GTAGAATCATAACTTTAGAA+TGG | + | chr1_4:53733149-53733168 | Msa0170080:intron | 25.0% |
| ! | AATATCATTTCACATCACTA+GGG | - | chr1_4:53733198-53733217 | None:intergenic | 25.0% |
| ! | TAATATCATTTCACATCACT+AGG | - | chr1_4:53733199-53733218 | None:intergenic | 25.0% |
| ! | ACGAACATCAATTATTATCA+TGG | + | chr1_4:53733520-53733539 | Msa0170080:intron | 25.0% |
| ! | TGATGAACAAAATCTGTATT+AGG | - | chr1_4:53733719-53733738 | None:intergenic | 25.0% |
| !!! | GGAAAAAAAGGCTTTAAAAA+GGG | - | chr1_4:53734192-53734211 | None:intergenic | 25.0% |
| !!! | AGGAAAAAAAGGCTTTAAAA+AGG | - | chr1_4:53734193-53734212 | None:intergenic | 25.0% |
| ! | AAAAACCCACAAAAAAAGTA+AGG | - | chr1_4:53734213-53734232 | None:intergenic | 25.0% |
| !! | AGAGCTTGTACAATTATTTT+CGG | + | chr1_4:53734584-53734603 | Msa0170080:CDS | 25.0% |
| !! | GCTTAAATACTATGCATTTT+TGG | + | chr1_4:53734645-53734664 | Msa0170080:intron | 25.0% |
| ! | GAATTTACTATTGTCTACAA+AGG | - | chr1_4:53734988-53735007 | None:intergenic | 25.0% |
| ! | ATAGCAAGTTTAGAGAAAAA+TGG | + | chr1_4:53735390-53735409 | Msa0170080:CDS | 25.0% |
| ! | TTTTTCTATATGGTGAAGGA+AGG | - | chr1_4:53732582-53732601 | None:intergenic | 30.0% |
| AGAAATGGTGAAATTCTCAA+AGG | + | chr1_4:53732601-53732620 | Msa0170080:exon | 30.0% | |
| ATGTTATCATGATCAGATTC+AGG | - | chr1_4:53732812-53732831 | None:intergenic | 30.0% | |
| TGTCCAAAATATTATGCACA+CGG | + | chr1_4:53732898-53732917 | Msa0170080:intron | 30.0% | |
| TAATGCTATATATATGGACG+TGG | - | chr1_4:53733055-53733074 | None:intergenic | 30.0% | |
| GCATTATCATACACTAAATG+TGG | + | chr1_4:53733069-53733088 | Msa0170080:intron | 30.0% | |
| !! | TCATAACTTTAGAATGGTTG+AGG | + | chr1_4:53733155-53733174 | Msa0170080:intron | 30.0% |
| ATTTACTAATGGGATTGCTA+TGG | + | chr1_4:53733645-53733664 | Msa0170080:intron | 30.0% | |
| ! | TACGATTGGTTGTATGTATA+AGG | - | chr1_4:53733742-53733761 | None:intergenic | 30.0% |
| CACAATAATACAAGTCAATG+AGG | + | chr1_4:53733909-53733928 | Msa0170080:intron | 30.0% | |
| ! | ATTTTTATCAAGTGGGGTTA+AGG | + | chr1_4:53734138-53734157 | Msa0170080:intron | 30.0% |
| TTAAGGCCTCTAATTAAAGT+GGG | + | chr1_4:53734155-53734174 | Msa0170080:intron | 30.0% | |
| ACTAAACCCACTTTAATTAG+AGG | - | chr1_4:53734164-53734183 | None:intergenic | 30.0% | |
| ! | TCTAATTAAAGTGGGTTTAG+TGG | + | chr1_4:53734163-53734182 | Msa0170080:intron | 30.0% |
| !! | AAAAAAGGCTTTAAAAAGGG+AGG | - | chr1_4:53734189-53734208 | None:intergenic | 30.0% |
| ATAATTGTACAAGCTCTGTT+TGG | - | chr1_4:53734581-53734600 | None:intergenic | 30.0% | |
| ! | TGTACAATTATTTTCGGAAG+AGG | + | chr1_4:53734590-53734609 | Msa0170080:CDS | 30.0% |
| ! | ATATCCTTTTTACTGTTCAC+AGG | + | chr1_4:53734701-53734720 | Msa0170080:intron | 30.0% |
| TCTGTATTATTTGCCTTTGT+TGG | - | chr1_4:53734894-53734913 | None:intergenic | 30.0% | |
| !! | GCTTAATTTGCAGAATGTTT+AGG | + | chr1_4:53735321-53735340 | Msa0170080:intron | 30.0% |
| AGAAATTTCACATACAGAAG+AGG | + | chr1_4:53735365-53735384 | Msa0170080:CDS | 30.0% | |
| ATGAGGACAAAAACAAAGAA+AGG | + | chr1_4:53735435-53735454 | Msa0170080:CDS | 30.0% | |
| !!! | AATGATTAGAAGTGCTTTTG+TGG | + | chr1_4:53735605-53735624 | Msa0170080:CDS | 30.0% |
| !!! | TATAAGTTTTGAGTAAGCCA+AGG | - | chr1_4:53735644-53735663 | None:intergenic | 30.0% |
| TTGGCTTACTCAAAACTTAT+AGG | + | chr1_4:53735643-53735662 | Msa0170080:CDS | 30.0% | |
| ! | TCACCGTGTGCATAATATTT+TGG | - | chr1_4:53732904-53732923 | None:intergenic | 35.0% |
| AGACAAGATCACTATGATTG+TGG | + | chr1_4:53733277-53733296 | Msa0170080:intron | 35.0% | |
| TATGATTGTGGAGTGATTCA+AGG | + | chr1_4:53733289-53733308 | Msa0170080:intron | 35.0% | |
| GTCATATTGACCAAGAATGA+AGG | + | chr1_4:53733780-53733799 | Msa0170080:intron | 35.0% | |
| ATCTTCATTCTTAGAGGACA+TGG | - | chr1_4:53733857-53733876 | None:intergenic | 35.0% | |
| ! | TCAATGAGGTGTCATCTTAA+TGG | + | chr1_4:53733923-53733942 | Msa0170080:intron | 35.0% |
| GTTAAGGCCTCTAATTAAAG+TGG | + | chr1_4:53734154-53734173 | Msa0170080:intron | 35.0% | |
| ! | TTTTCTAATTGGTGTAGGTG+AGG | + | chr1_4:53734520-53734539 | Msa0170080:intron | 35.0% |
| GTGAGGAAGAAAACCATAAA+AGG | + | chr1_4:53734537-53734556 | Msa0170080:CDS | 35.0% | |
| AAGAAAACCATAAAAGGCAG+TGG | + | chr1_4:53734543-53734562 | Msa0170080:CDS | 35.0% | |
| ! | TTCTTTTCCACTGCCTTTTA+TGG | - | chr1_4:53734553-53734572 | None:intergenic | 35.0% |
| ! | ATTATTTTCGGAAGAGGATG+AGG | + | chr1_4:53734596-53734615 | Msa0170080:CDS | 35.0% |
| GAGAATGAATTCATTGAGAG+AGG | + | chr1_4:53734789-53734808 | Msa0170080:CDS | 35.0% | |
| GAAAAAATATCCGCCAACAA+AGG | + | chr1_4:53734878-53734897 | Msa0170080:CDS | 35.0% | |
| GTATTATTTGCCTTTGTTGG+CGG | - | chr1_4:53734891-53734910 | None:intergenic | 35.0% | |
| CGGGATTCTGATTATTCATT+AGG | + | chr1_4:53734936-53734955 | Msa0170080:CDS | 35.0% | |
| TGCAGAATGTTTAGGAGATT+CGG | + | chr1_4:53735329-53735348 | Msa0170080:intron | 35.0% | |
| ATTTCGTGAATTCAGCAATG+AGG | + | chr1_4:53735418-53735437 | Msa0170080:CDS | 35.0% | |
| AAAGAAAGGAAAGCCTAGAA+TGG | + | chr1_4:53735449-53735468 | Msa0170080:CDS | 35.0% | |
| TCAATTCTCATTGCCATTCT+AGG | - | chr1_4:53735465-53735484 | None:intergenic | 35.0% | |
| AGCTATTACTAGCATGCTTT+GGG | + | chr1_4:53735518-53735537 | Msa0170080:CDS | 35.0% | |
| GATTTAGTGAACAATCCAAC+AGG | + | chr1_4:53735543-53735562 | Msa0170080:CDS | 35.0% | |
| TTGTGAATGAAATCTCCTGT+TGG | - | chr1_4:53735561-53735580 | None:intergenic | 35.0% | |
| AGAGAAGAAAAGTGGGAATG+AGG | - | chr1_4:53732545-53732564 | None:intergenic | 40.0% | |
| AAGCTCAACTCATACCAGAA+TGG | + | chr1_4:53732630-53732649 | Msa0170080:CDS | 40.0% | |
| TCAACTCATACCAGAATGGA+AGG | + | chr1_4:53732634-53732653 | Msa0170080:CDS | 40.0% | |
| ATGGACGTGGAAGAAATCTA+TGG | - | chr1_4:53733042-53733061 | None:intergenic | 40.0% | |
| ! | GATTCAAGGAGGTATGTATG+CGG | + | chr1_4:53733303-53733322 | Msa0170080:intron | 40.0% |
| CTCTCTATTAGCACGTGAAA+TGG | + | chr1_4:53734285-53734304 | Msa0170080:intron | 40.0% | |
| CAAGCATCCCAAAAAACACA+CGG | - | chr1_4:53734728-53734747 | None:intergenic | 40.0% | |
| !! | GCTTGATGATGAGCTAAACA+AGG | + | chr1_4:53734743-53734762 | Msa0170080:CDS | 40.0% |
| CAGCTATTACTAGCATGCTT+TGG | + | chr1_4:53735517-53735536 | Msa0170080:CDS | 40.0% | |
| ! | TATTACTAGCATGCTTTGGG+AGG | + | chr1_4:53735521-53735540 | Msa0170080:CDS | 40.0% |
| ACTCATACCAGAATGGAAGG+AGG | + | chr1_4:53732637-53732656 | Msa0170080:CDS | 45.0% | |
| !! | AGGAGGCATTCGTGAACTAT+TGG | + | chr1_4:53732654-53732673 | Msa0170080:CDS | 45.0% |
| !! | GCGTGGTTATGGTTTTGCTT+TGG | - | chr1_4:53732722-53732741 | None:intergenic | 45.0% |
| GAAAATGGAACCTCCTCCTT+CGG | - | chr1_4:53732744-53732763 | None:intergenic | 45.0% | |
| AGATTCAGGTGAGAGCTTGA+GGG | - | chr1_4:53732798-53732817 | None:intergenic | 45.0% | |
| TTATGCACACGGTGAAAGCA+TGG | + | chr1_4:53732909-53732928 | Msa0170080:intron | 45.0% | |
| GATTGTGGAGTGATTCAAGG+AGG | + | chr1_4:53733292-53733311 | Msa0170080:intron | 45.0% | |
| ! | TTTTCGGAAGAGGATGAGGT+AGG | + | chr1_4:53734600-53734619 | Msa0170080:intron | 45.0% |
| TTTCGGAAGAGGATGAGGTA+GGG | + | chr1_4:53734601-53734620 | Msa0170080:intron | 45.0% | |
| CGGACCTGTGAACAGTAAAA+AGG | - | chr1_4:53734708-53734727 | None:intergenic | 45.0% | |
| !!! | TCACAGGTCCGTGTGTTTTT+TGG | + | chr1_4:53734717-53734736 | Msa0170080:intron | 45.0% |
| !!! | CACAGGTCCGTGTGTTTTTT+GGG | + | chr1_4:53734718-53734737 | Msa0170080:intron | 45.0% |
| GAATAATCAGAATCCCGTGC+TGG | - | chr1_4:53734933-53734952 | None:intergenic | 45.0% | |
| GCAATGAGAATTGATGTCCC+TGG | + | chr1_4:53735471-53735490 | Msa0170080:CDS | 45.0% | |
| ! | CTCGAGTTGCATTTGTTCCA+GGG | - | chr1_4:53735491-53735510 | None:intergenic | 45.0% |
| ! | GCTTTTGTGGAGCTCTATAG+AGG | + | chr1_4:53735618-53735637 | Msa0170080:CDS | 45.0% |
| !! | AGTAAAAAATAAAATAAATA+TGG | + | chr1_4:53734425-53734444 | Msa0170080:intron | 5.0% |
| !!! | TAAAATATATTGAATAATTT+TGG | - | chr1_4:53735134-53735153 | None:intergenic | 5.0% |
| ACGAATGCCTCCTTCCATTC+TGG | - | chr1_4:53732647-53732666 | None:intergenic | 50.0% | |
| CAAAACCATAACCACGCCGA+AGG | + | chr1_4:53732725-53732744 | Msa0170080:CDS | 50.0% | |
| CAGATTCAGGTGAGAGCTTG+AGG | - | chr1_4:53732799-53732818 | None:intergenic | 50.0% | |
| ! | GCTCGAGTTGCATTTGTTCC+AGG | - | chr1_4:53735492-53735511 | None:intergenic | 50.0% |
| AACCATAACCACGCCGAAGG+AGG | + | chr1_4:53732728-53732747 | Msa0170080:CDS | 55.0% | |
| ! | CACACGGTGAAAGCATGGAG+CGG | + | chr1_4:53732914-53732933 | Msa0170080:intron | 55.0% |
| GTGGAGCTCTATAGAGGCCT+TGG | + | chr1_4:53735624-53735643 | Msa0170080:CDS | 55.0% | |
| CTCCTCCTTCGGCGTGGTTA+TGG | - | chr1_4:53732733-53732752 | None:intergenic | 60.0% | |
| CATAACCACGCCGAAGGAGG+AGG | + | chr1_4:53732731-53732750 | Msa0170080:CDS | 60.0% | |
| CTTTCCCGCGTTCTCCAGCA+CGG | + | chr1_4:53734916-53734935 | Msa0170080:CDS | 60.0% | |
| TTTCCCGCGTTCTCCAGCAC+GGG | + | chr1_4:53734917-53734936 | Msa0170080:CDS | 60.0% | |
| AATCCCGTGCTGGAGAACGC+GGG | - | chr1_4:53734923-53734942 | None:intergenic | 60.0% | |
| GAATCCCGTGCTGGAGAACG+CGG | - | chr1_4:53734924-53734943 | None:intergenic | 60.0% | |
| TGGAACCTCCTCCTTCGGCG+TGG | - | chr1_4:53732739-53732758 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53732532 | 53735668 | 53732532 | ID=Msa0170080;Name=Msa0170080 |
| chr1_4 | mRNA | 53732532 | 53735668 | 53732532 | ID=Msa0170080-mRNA-1;Parent=Msa0170080;Name=Msa0170080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|0.75|1|1|1|4|0|296 |
| chr1_4 | exon | 53732532 | 53732844 | 53732532 | ID=Msa0170080-mRNA-1:exon:16000;Parent=Msa0170080-mRNA-1 |
| chr1_4 | exon | 53734537 | 53734617 | 53734537 | ID=Msa0170080-mRNA-1:exon:16001;Parent=Msa0170080-mRNA-1 |
| chr1_4 | exon | 53734723 | 53734957 | 53734723 | ID=Msa0170080-mRNA-1:exon:16002;Parent=Msa0170080-mRNA-1 |
| chr1_4 | exon | 53735334 | 53735668 | 53735334 | ID=Msa0170080-mRNA-1:exon:16003;Parent=Msa0170080-mRNA-1 |
| chr1_4 | five_prime_UTR | 53732532 | 53732604 | 53732532 | ID=Msa0170080-mRNA-1:five_prime_utr;Parent=Msa0170080-mRNA-1 |
| chr1_4 | CDS | 53732605 | 53732844 | 53732605 | ID=Msa0170080-mRNA-1:cds;Parent=Msa0170080-mRNA-1 |
| chr1_4 | CDS | 53734537 | 53734617 | 53734537 | ID=Msa0170080-mRNA-1:cds;Parent=Msa0170080-mRNA-1 |
| chr1_4 | CDS | 53734723 | 53734957 | 53734723 | ID=Msa0170080-mRNA-1:cds;Parent=Msa0170080-mRNA-1 |
| chr1_4 | CDS | 53735334 | 53735668 | 53735334 | ID=Msa0170080-mRNA-1:cds;Parent=Msa0170080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
