Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030090 | RHN80358.1 | 96.949 | 295 | 9 | 0 | 1 | 295 | 54 | 348 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030090 | sp|Q8S403|PHO1_ARATH | 54.167 | 312 | 119 | 7 | 1 | 295 | 1 | 305 | 5.63e-87 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0030090 | 0.813498 | 2.482782e-51 | -8.615850e-47 |
| Msa0017710 | Msa0030090 | 0.806161 | 9.408551e-50 | -8.615850e-47 |
| Msa0024650 | Msa0030090 | 0.804173 | 2.452565e-49 | -8.615850e-47 |
| Msa0030090 | Msa0065520 | -0.805028 | 1.626999e-49 | -8.615850e-47 |
| Msa0030090 | Msa0072180 | 0.804855 | 1.768293e-49 | -8.615850e-47 |
| Msa0030090 | Msa0072390 | -0.800804 | 1.213575e-48 | -8.615850e-47 |
| Msa0030090 | Msa0081120 | -0.826069 | 3.320147e-54 | -8.615850e-47 |
| Msa0030090 | Msa0106540 | 0.803514 | 3.361933e-49 | -8.615850e-47 |
| Msa0030090 | Msa0120450 | 0.830243 | 3.276564e-55 | -8.615850e-47 |
| Msa0030090 | Msa0125600 | 0.891122 | 5.298275e-74 | -8.615850e-47 |
| Msa0030090 | Msa0170080 | 0.997166 | 6.066330e-238 | -8.615850e-47 |
| Msa0030090 | Msa0220090 | 0.810458 | 1.141110e-50 | -8.615850e-47 |
| Msa0030090 | Msa0269240 | 0.893908 | 4.053810e-75 | -8.615850e-47 |
| Msa0030090 | Msa0279810 | 0.840135 | 1.043339e-57 | -8.615850e-47 |
| Msa0030090 | Msa0299030 | 0.804596 | 2.001896e-49 | -8.615850e-47 |
| Msa0030090 | Msa0307040 | 0.805069 | 1.594648e-49 | -8.615850e-47 |
| Msa0030090 | Msa0319220 | 0.836072 | 1.158974e-56 | -8.615850e-47 |
| Msa0030090 | Msa0354600 | 0.813305 | 2.738380e-51 | -8.615850e-47 |
| Msa0030090 | Msa0371510 | 0.806365 | 8.522441e-50 | -8.615850e-47 |
| Msa0030090 | Msa0382460 | 0.809908 | 1.499679e-50 | -8.615850e-47 |
| Msa0030090 | Msa0396860 | 0.801457 | 8.923160e-49 | -8.615850e-47 |
| Msa0030090 | Msa0410560 | 0.800051 | 1.728082e-48 | -8.615850e-47 |
| Msa0030090 | Msa0423220 | 0.808736 | 2.674772e-50 | -8.615850e-47 |
| Msa0030090 | Msa0454160 | 0.805099 | 1.572315e-49 | -8.615850e-47 |
| Msa0030090 | Msa0471390 | 0.804082 | 2.562240e-49 | -8.615850e-47 |
| Msa0030090 | Msa0502970 | 0.811719 | 6.082427e-51 | -8.615850e-47 |
| Msa0030090 | Msa0553090 | 0.821411 | 4.096807e-53 | -8.615850e-47 |
| Msa0030090 | Msa0575380 | 0.814004 | 1.921371e-51 | -8.615850e-47 |
| Msa0030090 | Msa0576180 | 0.801503 | 8.730134e-49 | -8.615850e-47 |
| Msa0030090 | Msa0606470 | 0.812332 | 4.470679e-51 | -8.615850e-47 |
| Msa0030090 | Msa0608780 | -0.817560 | 3.094797e-52 | -8.615850e-47 |
| Msa0030090 | Msa0610700 | -0.802579 | 5.247887e-49 | -8.615850e-47 |
| Msa0030090 | Msa0629160 | 0.807984 | 3.870387e-50 | -8.615850e-47 |
| Msa0030090 | Msa0649250 | -0.809932 | 1.481908e-50 | -8.615850e-47 |
| Msa0030090 | Msa0690190 | 0.805124 | 1.553027e-49 | -8.615850e-47 |
| Msa0030090 | Msa0732970 | 0.806828 | 6.804056e-50 | -8.615850e-47 |
| Msa0030090 | Msa0733560 | 0.808712 | 2.706636e-50 | -8.615850e-47 |
| Msa0030090 | Msa0773960 | 0.812393 | 4.337034e-51 | -8.615850e-47 |
| Msa0030090 | Msa0774660 | 0.800227 | 1.590802e-48 | -8.615850e-47 |
| Msa0030090 | Msa0823310 | -0.811534 | 6.672199e-51 | -8.615850e-47 |
| Msa0030090 | Msa0838210 | 0.820660 | 6.098852e-53 | -8.615850e-47 |
| Msa0030090 | Msa0839040 | 0.808669 | 2.764250e-50 | -8.615850e-47 |
| Msa0030090 | Msa0852490 | 0.815627 | 8.390569e-52 | -8.615850e-47 |
| Msa0030090 | Msa0910170 | 0.805341 | 1.399025e-49 | -8.615850e-47 |
| Msa0030090 | Msa0935840 | -0.802836 | 4.643224e-49 | -8.615850e-47 |
| Msa0030090 | Msa0973010 | -0.808949 | 2.408046e-50 | -8.615850e-47 |
| Msa0030090 | Msa1002820 | 0.806549 | 7.792972e-50 | -8.615850e-47 |
| Msa0030090 | Msa1029780 | 0.806816 | 6.846722e-50 | -8.615850e-47 |
| Msa0030090 | Msa1029860 | 0.815355 | 9.648357e-52 | -8.615850e-47 |
| Msa0030090 | Msa1068730 | 0.801010 | 1.101650e-48 | -8.615850e-47 |
| Msa0030090 | Msa1068780 | 0.814554 | 1.452073e-51 | -8.615850e-47 |
| Msa0030090 | Msa1069350 | 0.809768 | 1.606994e-50 | -8.615850e-47 |
| Msa0030090 | Msa1078120 | -0.801866 | 7.356141e-49 | -8.615850e-47 |
| Msa0030090 | Msa1108560 | 0.812104 | 5.015577e-51 | -8.615850e-47 |
| Msa0030090 | Msa1147010 | 0.807478 | 4.956448e-50 | -8.615850e-47 |
| Msa0030090 | Msa1156740 | 0.822072 | 2.879757e-53 | -8.615850e-47 |
| Msa0030090 | Msa1157210 | 0.803706 | 3.066584e-49 | -8.615850e-47 |
| Msa0030090 | Msa1181090 | 0.800513 | 1.391431e-48 | -8.615850e-47 |
| Msa0030090 | Msa1215220 | -0.819343 | 1.220508e-52 | -8.615850e-47 |
| Msa0030090 | Msa1223960 | 0.808638 | 2.807413e-50 | -8.615850e-47 |
| Msa0030090 | Msa1223990 | 0.812154 | 4.890389e-51 | -8.615850e-47 |
| Msa0030090 | Msa1228460 | -0.812619 | 3.871269e-51 | -8.615850e-47 |
| Msa0030090 | Msa1255020 | -0.816775 | 4.647636e-52 | -8.615850e-47 |
| Msa0030090 | Msa1263110 | 0.816975 | 4.190380e-52 | -8.615850e-47 |
| Msa0030090 | Msa1295470 | -0.814689 | 1.355904e-51 | -8.615850e-47 |
| Msa0030090 | Msa1311370 | 0.807420 | 5.098205e-50 | -8.615850e-47 |
| Msa0030090 | Msa1377230 | 0.816040 | 6.785978e-52 | -8.615850e-47 |
| Msa0030090 | Msa1387480 | 0.901318 | 3.023618e-78 | -8.615850e-47 |
| Msa0030090 | Msa1400300 | 0.804198 | 2.423839e-49 | -8.615850e-47 |
| Msa0030090 | Msa1405830 | 0.802838 | 4.638979e-49 | -8.615850e-47 |
| Msa0030090 | Msa1441450 | 0.904923 | 7.386976e-80 | -8.615850e-47 |
| Msa0030090 | Msa1455360 | 0.803604 | 3.220347e-49 | -8.615850e-47 |
| Msa0030090 | Msa1458270 | 0.811871 | 5.636508e-51 | -8.615850e-47 |
| Msa0030090 | Msa1466130 | 0.848157 | 7.328134e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030090 | MtrunA17_Chr1g0187381 | 96.949 | 295 | 9 | 0 | 1 | 295 | 54 | 348 | 0.0 | 591 |
| Msa0030090 | MtrunA17_Chr1g0166651 | 64.452 | 301 | 96 | 4 | 1 | 295 | 1 | 296 | 2.14e-117 | 355 |
| Msa0030090 | MtrunA17_Chr8g0368741 | 36.025 | 322 | 161 | 11 | 1 | 296 | 1 | 303 | 1.96e-46 | 166 |
| Msa0030090 | MtrunA17_Chr7g0217831 | 27.869 | 305 | 196 | 10 | 2 | 295 | 1 | 292 | 3.30e-14 | 72.4 |
| Msa0030090 | MtrunA17_Chr7g0217791 | 32.692 | 156 | 89 | 5 | 2 | 147 | 1 | 150 | 1.73e-12 | 65.1 |
| Msa0030090 | MtrunA17_Chr2g0302531 | 27.483 | 302 | 202 | 10 | 2 | 295 | 1 | 293 | 2.11e-12 | 67.4 |
| Msa0030090 | MtrunA17_Chr7g0217801 | 26.230 | 305 | 205 | 11 | 2 | 295 | 1 | 296 | 4.13e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030090 | AT3G23430.1 | 54.167 | 312 | 119 | 7 | 1 | 295 | 1 | 305 | 5.72e-88 | 279 |
| Msa0030090 | AT1G68740.2 | 34.796 | 319 | 173 | 12 | 1 | 296 | 1 | 307 | 2.00e-37 | 141 |
| Msa0030090 | AT1G68740.1 | 33.856 | 319 | 176 | 11 | 1 | 296 | 1 | 307 | 3.30e-37 | 140 |
| Msa0030090 | AT1G14040.1 | 31.056 | 161 | 96 | 4 | 2 | 147 | 1 | 161 | 1.39e-11 | 65.5 |
| Msa0030090 | AT1G35350.1 | 27.181 | 298 | 185 | 11 | 2 | 295 | 1 | 270 | 4.96e-11 | 63.9 |
Find 53 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCTCATTGCCATTCT+AGG | 0.174578 | 1_1:-56067850 | None:intergenic |
| TCTCTTGTTTAATGTAAAAT+TGG | 0.199156 | 1_1:-56067158 | None:intergenic |
| CTCCTCCTTCGGCGTGGTTA+TGG | 0.243700 | 1_1:-56065020 | None:intergenic |
| TTGGCTTACTCAAAACTTAT+AGG | 0.246252 | 1_1:+56068031 | Msa0030090:CDS |
| CGGGATTCTGATTATTCATT+AGG | 0.249123 | 1_1:+56067324 | Msa0030090:CDS |
| TATCATTTATAATTTGCTTT+AGG | 0.270894 | 1_1:-56067236 | None:intergenic |
| ATGTTATCATGATCAGATTC+AGG | 0.293820 | 1_1:-56065099 | None:intergenic |
| TCTGTATTATTTGCCTTTGT+TGG | 0.332893 | 1_1:-56067279 | None:intergenic |
| GCTTAATTTGCAGAATGTTT+AGG | 0.332993 | 1_1:+56067709 | Msa0030090:intron |
| CAGCTATTACTAGCATGCTT+TGG | 0.334532 | 1_1:+56067905 | Msa0030090:CDS |
| AAAGCAAAGAGAATTGAAAA+TGG | 0.340353 | 1_1:-56065046 | None:intergenic |
| TGATAACATAAATATCATTA+AGG | 0.344335 | 1_1:+56065113 | Msa0030090:CDS |
| GTGGAGCTCTATAGAGGCCT+TGG | 0.346019 | 1_1:+56068012 | Msa0030090:CDS |
| GCTCGAGTTGCATTTGTTCC+AGG | 0.348462 | 1_1:-56067877 | None:intergenic |
| TGCAGAATGTTTAGGAGATT+CGG | 0.369539 | 1_1:+56067717 | Msa0030090:intron |
| AGCTATTACTAGCATGCTTT+GGG | 0.372445 | 1_1:+56067906 | Msa0030090:CDS |
| ACGAATGCCTCCTTCCATTC+TGG | 0.378946 | 1_1:-56064934 | None:intergenic |
| GTGAGGAAGAAAACCATAAA+AGG | 0.387305 | 1_1:+56066925 | Msa0030090:CDS |
| ATAATTGTACAAGCTCTGTT+TGG | 0.426330 | 1_1:-56066966 | None:intergenic |
| AGGAGGCATTCGTGAACTAT+TGG | 0.429457 | 1_1:+56064944 | Msa0030090:CDS |
| CAGATTCAGGTGAGAGCTTG+AGG | 0.442326 | 1_1:-56065086 | None:intergenic |
| GTATTATTTGCCTTTGTTGG+CGG | 0.447529 | 1_1:-56067276 | None:intergenic |
| CTCGAGTTGCATTTGTTCCA+GGG | 0.472618 | 1_1:-56067876 | None:intergenic |
| GAAAATGGAACCTCCTCCTT+CGG | 0.473857 | 1_1:-56065031 | None:intergenic |
| AGAGAAGAAAAGTGGGAATG+AGG | 0.506066 | 1_1:-56064832 | None:intergenic |
| TATATATAGAGAAGAAAAGT+GGG | 0.519157 | 1_1:-56064839 | None:intergenic |
| GATTTAGTGAACAATCCAAC+AGG | 0.519226 | 1_1:+56067931 | Msa0030090:CDS |
| AAAGAAAGGAAAGCCTAGAA+TGG | 0.527856 | 1_1:+56067837 | Msa0030090:CDS |
| AGAAATTTCACATACAGAAG+AGG | 0.536149 | 1_1:+56067753 | Msa0030090:CDS |
| TTGTGAATGAAATCTCCTGT+TGG | 0.543831 | 1_1:-56067946 | None:intergenic |
| ATATATATAGAGAAGAAAAG+TGG | 0.546538 | 1_1:-56064840 | None:intergenic |
| AAGAAAACCATAAAAGGCAG+TGG | 0.550274 | 1_1:+56066931 | Msa0030090:CDS |
| TATTACTAGCATGCTTTGGG+AGG | 0.550285 | 1_1:+56067909 | Msa0030090:CDS |
| GGGAATGAGGTTATATGAAG+TGG | 0.556456 | 1_1:-56064819 | None:intergenic |
| CTTTCCCGCGTTCTCCAGCA+CGG | 0.563353 | 1_1:+56067304 | Msa0030090:CDS |
| CATAACCACGCCGAAGGAGG+AGG | 0.563418 | 1_1:+56065021 | Msa0030090:CDS |
| AAGCTCAACTCATACCAGAA+TGG | 0.565158 | 1_1:+56064920 | Msa0030090:CDS |
| GAATAATCAGAATCCCGTGC+TGG | 0.569715 | 1_1:-56067318 | None:intergenic |
| GAGAATGAATTCATTGAGAG+AGG | 0.576531 | 1_1:+56067177 | Msa0030090:CDS |
| AGATTCAGGTGAGAGCTTGA+GGG | 0.580711 | 1_1:-56065085 | None:intergenic |
| TCAACTCATACCAGAATGGA+AGG | 0.589083 | 1_1:+56064924 | Msa0030090:CDS |
| CAAAACCATAACCACGCCGA+AGG | 0.591766 | 1_1:+56065015 | Msa0030090:CDS |
| TTTCCCGCGTTCTCCAGCAC+GGG | 0.592357 | 1_1:+56067305 | Msa0030090:CDS |
| AACCATAACCACGCCGAAGG+AGG | 0.596363 | 1_1:+56065018 | Msa0030090:CDS |
| AGAAATGGTGAAATTCTCAA+AGG | 0.597216 | 1_1:+56064891 | Msa0030090:exon |
| ATTTCGTGAATTCAGCAATG+AGG | 0.610454 | 1_1:+56067806 | Msa0030090:CDS |
| GAATCCCGTGCTGGAGAACG+CGG | 0.615381 | 1_1:-56067309 | None:intergenic |
| GCAATGAGAATTGATGTCCC+TGG | 0.637981 | 1_1:+56067859 | Msa0030090:CDS |
| AATCCCGTGCTGGAGAACGC+GGG | 0.646988 | 1_1:-56067308 | None:intergenic |
| AAATTATAAATGATAGACGA+AGG | 0.670723 | 1_1:+56067244 | Msa0030090:CDS |
| TGGAACCTCCTCCTTCGGCG+TGG | 0.689910 | 1_1:-56065026 | None:intergenic |
| ACTCATACCAGAATGGAAGG+AGG | 0.716098 | 1_1:+56064927 | Msa0030090:CDS |
| GCTTGATGATGAGCTAAACA+AGG | 0.730559 | 1_1:+56067131 | Msa0030090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTAATTTTTTTTTTTG+AGG | + | chr1_1:56065744-56065763 | Msa0030090:intron | 10.0% |
| !!! | TCATTAATTTTTTTTTTTGA+GGG | + | chr1_1:56065745-56065764 | Msa0030090:intron | 10.0% |
| !! | AAATATAAATCATTTACTAA+TGG | + | chr1_1:56065991-56066010 | Msa0030090:intron | 10.0% |
| !! | AATATAAATCATTTACTAAT+GGG | + | chr1_1:56065992-56066011 | Msa0030090:intron | 10.0% |
| !!! | ATTACATTTTTTTTTAAAGT+AGG | - | chr1_1:56066428-56066447 | None:intergenic | 10.0% |
| !!! | AATATGAATATTTTTCTAAT+TGG | + | chr1_1:56066897-56066916 | Msa0030090:intron | 10.0% |
| !! | TGATAACATAAATATCATTA+AGG | + | chr1_1:56065113-56065132 | Msa0030090:CDS | 15.0% |
| !! | TATTGAGAAATATTAATTTC+TGG | + | chr1_1:56065163-56065182 | Msa0030090:intron | 15.0% |
| !! | AAAAAAATGATAATAATTGG+TGG | - | chr1_1:56065827-56065846 | None:intergenic | 15.0% |
| !! | CGTAAAAAAATGATAATAAT+TGG | - | chr1_1:56065830-56065849 | None:intergenic | 15.0% |
| !!! | CCTATACTATATTATAATTT+TGG | - | chr1_1:56066031-56066050 | None:intergenic | 15.0% |
| !! | CCAAAATTATAATATAGTAT+AGG | + | chr1_1:56066028-56066047 | Msa0030090:intron | 15.0% |
| !!! | AAAAATTATTTCTTCATTCT+TGG | - | chr1_1:56066151-56066170 | None:intergenic | 15.0% |
| !! | AATTTGATTATATTTCATTG+TGG | + | chr1_1:56066237-56066256 | Msa0030090:intron | 15.0% |
| !!! | ATTTTCGACAATAATTAAAA+TGG | - | chr1_1:56066371-56066390 | None:intergenic | 15.0% |
| !!! | GACATTATTATTCTTTAAAA+TGG | - | chr1_1:56066399-56066418 | None:intergenic | 15.0% |
| !!! | TGATTAATATTTTTATCAAC+TGG | + | chr1_1:56066490-56066509 | Msa0030090:intron | 15.0% |
| !!! | GATTAATATTTTTATCAACT+GGG | + | chr1_1:56066491-56066510 | Msa0030090:intron | 15.0% |
| !!! | ATTAATATTTTTATCAACTG+GGG | + | chr1_1:56066492-56066511 | Msa0030090:intron | 15.0% |
| !! | AAAATATGAATATCAGAATA+TGG | + | chr1_1:56066846-56066865 | Msa0030090:intron | 15.0% |
| !!! | TATCATTTATAATTTGCTTT+AGG | - | chr1_1:56067239-56067258 | None:intergenic | 15.0% |
| !!! | ATAATATGATAAGTTCTAAA+AGG | + | chr1_1:56067567-56067586 | Msa0030090:intron | 15.0% |
| !! | AATAATATGGAAATCAAAAA+AGG | - | chr1_1:56067673-56067692 | None:intergenic | 15.0% |
| !! | TATATATAGAGAAGAAAAGT+GGG | - | chr1_1:56064842-56064861 | None:intergenic | 20.0% |
| !! | ATATATATAGAGAAGAAAAG+TGG | - | chr1_1:56064843-56064862 | None:intergenic | 20.0% |
| !!! | TTCTATATTTTGTCACATAA+TGG | + | chr1_1:56065249-56065268 | Msa0030090:intron | 20.0% |
| !!! | GTATGATAATGCTATATATA+TGG | - | chr1_1:56065351-56065370 | None:intergenic | 20.0% |
| !! | TCAAATTTCATTATAGTTAG+AGG | - | chr1_1:56065391-56065410 | None:intergenic | 20.0% |
| !! | CTATAATGAAATTTGAATCA+TGG | + | chr1_1:56065395-56065414 | Msa0030090:intron | 20.0% |
| !! | ACAATATAATTACGTATGTA+TGG | - | chr1_1:56065630-56065649 | None:intergenic | 20.0% |
| !!! | CATTAATTTTAATTAGCCAA+AGG | + | chr1_1:56065777-56065796 | Msa0030090:intron | 20.0% |
| !! | ATGAATTGAAAATAATCCTT+TGG | - | chr1_1:56065796-56065815 | None:intergenic | 20.0% |
| !! | TGATATTATGTTAATACGAT+TGG | - | chr1_1:56066114-56066133 | None:intergenic | 20.0% |
| !! | AATTATATCTTCATTCTTAG+AGG | - | chr1_1:56066221-56066240 | None:intergenic | 20.0% |
| !! | CAAAAAAAGTAAGGAAAAAA+AGG | - | chr1_1:56066564-56066583 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTACTTTTTTTG+TGG | + | chr1_1:56066564-56066583 | Msa0030090:intron | 20.0% |
| !!! | TTTTTCCTTACTTTTTTTGT+GGG | + | chr1_1:56066565-56066584 | Msa0030090:intron | 20.0% |
| !!! | AATATTTTTCTAATTGGTGT+AGG | + | chr1_1:56066903-56066922 | Msa0030090:intron | 20.0% |
| !!! | TCTCTTGTTTAATGTAAAAT+TGG | - | chr1_1:56067161-56067180 | None:intergenic | 20.0% |
| !! | AAATTATAAATGATAGACGA+AGG | + | chr1_1:56067244-56067263 | Msa0030090:CDS | 20.0% |
| !! | CCATTCATACTTAAATAATA+TGG | - | chr1_1:56067686-56067705 | None:intergenic | 20.0% |
| !! | CCATATTATTTAAGTATGAA+TGG | + | chr1_1:56067683-56067702 | Msa0030090:intron | 20.0% |
| !! | TTTCTTTTTCTATATGGTGA+AGG | - | chr1_1:56064876-56064895 | None:intergenic | 25.0% |
| ! | TCACCATATAGAAAAAGAAA+TGG | + | chr1_1:56064876-56064895 | Msa0030090:exon | 25.0% |
| !! | TCACCATTTCTTTTTCTATA+TGG | - | chr1_1:56064882-56064901 | None:intergenic | 25.0% |
| ! | AAAGCAAAGAGAATTGAAAA+TGG | - | chr1_1:56065049-56065068 | None:intergenic | 25.0% |
| ! | TTCATTATAGTTAGAGGATA+AGG | - | chr1_1:56065385-56065404 | None:intergenic | 25.0% |
| ! | AATGAAATTTGAATCATGGT+TGG | + | chr1_1:56065399-56065418 | Msa0030090:intron | 25.0% |
| !! | CTACTATTTGTGTTTCTATA+TGG | - | chr1_1:56065425-56065444 | None:intergenic | 25.0% |
| !! | GTAGAATCATAACTTTAGAA+TGG | + | chr1_1:56065441-56065460 | Msa0030090:intron | 25.0% |
| ! | AATATCATTTCACATCACTA+GGG | - | chr1_1:56065490-56065509 | None:intergenic | 25.0% |
| ! | TAATATCATTTCACATCACT+AGG | - | chr1_1:56065491-56065510 | None:intergenic | 25.0% |
| ! | TGATGAACAAAATCTGTATT+AGG | - | chr1_1:56066077-56066096 | None:intergenic | 25.0% |
| !!! | GGAAAAAAAGGCTTTAAAAA+GGG | - | chr1_1:56066552-56066571 | None:intergenic | 25.0% |
| !!! | AGGAAAAAAAGGCTTTAAAA+AGG | - | chr1_1:56066553-56066572 | None:intergenic | 25.0% |
| ! | AAAAACCCACAAAAAAAGTA+AGG | - | chr1_1:56066573-56066592 | None:intergenic | 25.0% |
| !! | AGAGCTTGTACAATTATTTT+CGG | + | chr1_1:56066972-56066991 | Msa0030090:CDS | 25.0% |
| !! | GCTTAAATACTATGCATTTT+TGG | + | chr1_1:56067033-56067052 | Msa0030090:intron | 25.0% |
| ! | GAATTTACTATTGTCTACAA+AGG | - | chr1_1:56067376-56067395 | None:intergenic | 25.0% |
| ! | ATAGCAAGTTTAGAGAAAAA+TGG | + | chr1_1:56067778-56067797 | Msa0030090:CDS | 25.0% |
| ! | TTTTTCTATATGGTGAAGGA+AGG | - | chr1_1:56064872-56064891 | None:intergenic | 30.0% |
| AGAAATGGTGAAATTCTCAA+AGG | + | chr1_1:56064891-56064910 | Msa0030090:exon | 30.0% | |
| ATGTTATCATGATCAGATTC+AGG | - | chr1_1:56065102-56065121 | None:intergenic | 30.0% | |
| TAATGCTATATATATGGACG+TGG | - | chr1_1:56065345-56065364 | None:intergenic | 30.0% | |
| GCATTATCATACACTAAATG+TGG | + | chr1_1:56065359-56065378 | Msa0030090:intron | 30.0% | |
| !! | TCATAACTTTAGAATGGTTG+AGG | + | chr1_1:56065447-56065466 | Msa0030090:intron | 30.0% |
| ACGCACATCAATTATTATCA+TGG | + | chr1_1:56065847-56065866 | Msa0030090:intron | 30.0% | |
| ! | TACGATTGGTTGTATGTATA+AGG | - | chr1_1:56066100-56066119 | None:intergenic | 30.0% |
| CACAATAATACAAGTCAATG+AGG | + | chr1_1:56066267-56066286 | Msa0030090:intron | 30.0% | |
| ! | ATTTTTATCAACTGGGGTTA+AGG | + | chr1_1:56066498-56066517 | Msa0030090:intron | 30.0% |
| TTAAGGCCTCTAATTAAAGT+GGG | + | chr1_1:56066515-56066534 | Msa0030090:intron | 30.0% | |
| ACTAAACCCACTTTAATTAG+AGG | - | chr1_1:56066524-56066543 | None:intergenic | 30.0% | |
| ! | TCTAATTAAAGTGGGTTTAG+TGG | + | chr1_1:56066523-56066542 | Msa0030090:intron | 30.0% |
| !! | AAAAAAGGCTTTAAAAAGGG+AGG | - | chr1_1:56066549-56066568 | None:intergenic | 30.0% |
| ATAATTGTACAAGCTCTGTT+TGG | - | chr1_1:56066969-56066988 | None:intergenic | 30.0% | |
| ! | TGTACAATTATTTTCGGAAG+AGG | + | chr1_1:56066978-56066997 | Msa0030090:CDS | 30.0% |
| ! | ATATCCTTTTTACTGTTCAC+AGG | + | chr1_1:56067089-56067108 | Msa0030090:intron | 30.0% |
| TCTGTATTATTTGCCTTTGT+TGG | - | chr1_1:56067282-56067301 | None:intergenic | 30.0% | |
| !! | GCTTAATTTGCAGAATGTTT+AGG | + | chr1_1:56067709-56067728 | Msa0030090:intron | 30.0% |
| AGAAATTTCACATACAGAAG+AGG | + | chr1_1:56067753-56067772 | Msa0030090:CDS | 30.0% | |
| ATGAGGACAAAAACAAAGAA+AGG | + | chr1_1:56067823-56067842 | Msa0030090:CDS | 30.0% | |
| !!! | AATGATTAGAAGTGCTTTTG+TGG | + | chr1_1:56067993-56068012 | Msa0030090:CDS | 30.0% |
| !!! | TATAAGTTTTGAGTAAGCCA+AGG | - | chr1_1:56068032-56068051 | None:intergenic | 30.0% |
| TTGGCTTACTCAAAACTTAT+AGG | + | chr1_1:56068031-56068050 | Msa0030090:CDS | 30.0% | |
| TGTCCAAAATGTTATGCACA+CGG | + | chr1_1:56065188-56065207 | Msa0030090:intron | 35.0% | |
| AAGATACGCACTAACAAAGA+AGG | - | chr1_1:56065302-56065321 | None:intergenic | 35.0% | |
| AGACAAGATCACTATGATTG+TGG | + | chr1_1:56065569-56065588 | Msa0030090:intron | 35.0% | |
| TATGATTGTGGAGTGATTCA+AGG | + | chr1_1:56065581-56065600 | Msa0030090:intron | 35.0% | |
| ATCTTCATTCTTAGAGGACA+TGG | - | chr1_1:56066215-56066234 | None:intergenic | 35.0% | |
| ! | TCAATGAGGTGTCATCTTAA+TGG | + | chr1_1:56066281-56066300 | Msa0030090:intron | 35.0% |
| GTTAAGGCCTCTAATTAAAG+TGG | + | chr1_1:56066514-56066533 | Msa0030090:intron | 35.0% | |
| ! | TTTTCTAATTGGTGTAGGTG+AGG | + | chr1_1:56066908-56066927 | Msa0030090:intron | 35.0% |
| GTGAGGAAGAAAACCATAAA+AGG | + | chr1_1:56066925-56066944 | Msa0030090:CDS | 35.0% | |
| AAGAAAACCATAAAAGGCAG+TGG | + | chr1_1:56066931-56066950 | Msa0030090:CDS | 35.0% | |
| ! | TTCTTTTCCACTGCCTTTTA+TGG | - | chr1_1:56066941-56066960 | None:intergenic | 35.0% |
| ! | ATTATTTTCGGAAGAGGATG+AGG | + | chr1_1:56066984-56067003 | Msa0030090:CDS | 35.0% |
| GAGAATGAATTCATTGAGAG+AGG | + | chr1_1:56067177-56067196 | Msa0030090:CDS | 35.0% | |
| GAAAAAATATCCGCCAACAA+AGG | + | chr1_1:56067266-56067285 | Msa0030090:CDS | 35.0% | |
| GTATTATTTGCCTTTGTTGG+CGG | - | chr1_1:56067279-56067298 | None:intergenic | 35.0% | |
| CGGGATTCTGATTATTCATT+AGG | + | chr1_1:56067324-56067343 | Msa0030090:CDS | 35.0% | |
| TGCAGAATGTTTAGGAGATT+CGG | + | chr1_1:56067717-56067736 | Msa0030090:intron | 35.0% | |
| ATTTCGTGAATTCAGCAATG+AGG | + | chr1_1:56067806-56067825 | Msa0030090:CDS | 35.0% | |
| AAAGAAAGGAAAGCCTAGAA+TGG | + | chr1_1:56067837-56067856 | Msa0030090:CDS | 35.0% | |
| TCAATTCTCATTGCCATTCT+AGG | - | chr1_1:56067853-56067872 | None:intergenic | 35.0% | |
| AGCTATTACTAGCATGCTTT+GGG | + | chr1_1:56067906-56067925 | Msa0030090:CDS | 35.0% | |
| GATTTAGTGAACAATCCAAC+AGG | + | chr1_1:56067931-56067950 | Msa0030090:CDS | 35.0% | |
| TTGTGAATGAAATCTCCTGT+TGG | - | chr1_1:56067949-56067968 | None:intergenic | 35.0% | |
| AGAGAAGAAAAGTGGGAATG+AGG | - | chr1_1:56064835-56064854 | None:intergenic | 40.0% | |
| AAGCTCAACTCATACCAGAA+TGG | + | chr1_1:56064920-56064939 | Msa0030090:CDS | 40.0% | |
| TCAACTCATACCAGAATGGA+AGG | + | chr1_1:56064924-56064943 | Msa0030090:CDS | 40.0% | |
| ! | TCACCGTGTGCATAACATTT+TGG | - | chr1_1:56065194-56065213 | None:intergenic | 40.0% |
| ATGGACGTGGAAGAAATCTA+TGG | - | chr1_1:56065332-56065351 | None:intergenic | 40.0% | |
| CTCTCTATTAGCACGTGAAA+TGG | + | chr1_1:56066645-56066664 | Msa0030090:intron | 40.0% | |
| CAAGCATCCCAAAAAACACA+CGG | - | chr1_1:56067116-56067135 | None:intergenic | 40.0% | |
| !! | GCTTGATGATGAGCTAAACA+AGG | + | chr1_1:56067131-56067150 | Msa0030090:CDS | 40.0% |
| CAGCTATTACTAGCATGCTT+TGG | + | chr1_1:56067905-56067924 | Msa0030090:CDS | 40.0% | |
| ! | TATTACTAGCATGCTTTGGG+AGG | + | chr1_1:56067909-56067928 | Msa0030090:CDS | 40.0% |
| ACTCATACCAGAATGGAAGG+AGG | + | chr1_1:56064927-56064946 | Msa0030090:CDS | 45.0% | |
| !! | AGGAGGCATTCGTGAACTAT+TGG | + | chr1_1:56064944-56064963 | Msa0030090:CDS | 45.0% |
| !! | GCGTGGTTATGGTTTTGCTT+TGG | - | chr1_1:56065012-56065031 | None:intergenic | 45.0% |
| GAAAATGGAACCTCCTCCTT+CGG | - | chr1_1:56065034-56065053 | None:intergenic | 45.0% | |
| AGATTCAGGTGAGAGCTTGA+GGG | - | chr1_1:56065088-56065107 | None:intergenic | 45.0% | |
| TTATGCACACGGTGAAAGCA+TGG | + | chr1_1:56065199-56065218 | Msa0030090:intron | 45.0% | |
| GATTGTGGAGTGATTCAAGG+AGG | + | chr1_1:56065584-56065603 | Msa0030090:intron | 45.0% | |
| ! | GATTCAAGGAGGTGTGTATG+CGG | + | chr1_1:56065595-56065614 | Msa0030090:intron | 45.0% |
| ! | TTTTCGGAAGAGGATGAGGT+AGG | + | chr1_1:56066988-56067007 | Msa0030090:intron | 45.0% |
| TTTCGGAAGAGGATGAGGTA+GGG | + | chr1_1:56066989-56067008 | Msa0030090:intron | 45.0% | |
| CGGACCTGTGAACAGTAAAA+AGG | - | chr1_1:56067096-56067115 | None:intergenic | 45.0% | |
| !!! | TCACAGGTCCGTGTGTTTTT+TGG | + | chr1_1:56067105-56067124 | Msa0030090:intron | 45.0% |
| !!! | CACAGGTCCGTGTGTTTTTT+GGG | + | chr1_1:56067106-56067125 | Msa0030090:intron | 45.0% |
| GAATAATCAGAATCCCGTGC+TGG | - | chr1_1:56067321-56067340 | None:intergenic | 45.0% | |
| GCAATGAGAATTGATGTCCC+TGG | + | chr1_1:56067859-56067878 | Msa0030090:CDS | 45.0% | |
| ! | CTCGAGTTGCATTTGTTCCA+GGG | - | chr1_1:56067879-56067898 | None:intergenic | 45.0% |
| ! | GCTTTTGTGGAGCTCTATAG+AGG | + | chr1_1:56068006-56068025 | Msa0030090:CDS | 45.0% |
| !!! | ATAATTTTTTTTTTTTTTTG+AGG | + | chr1_1:56066697-56066716 | Msa0030090:intron | 5.0% |
| !!! | TAATTTTTTTTTTTTTTTGA+GGG | + | chr1_1:56066698-56066717 | Msa0030090:intron | 5.0% |
| !! | AGTAAAAAATAAAATAAATA+TGG | + | chr1_1:56066813-56066832 | Msa0030090:intron | 5.0% |
| !!! | TAAAATATATTGAATAATTT+TGG | - | chr1_1:56067522-56067541 | None:intergenic | 5.0% |
| ACGAATGCCTCCTTCCATTC+TGG | - | chr1_1:56064937-56064956 | None:intergenic | 50.0% | |
| CAAAACCATAACCACGCCGA+AGG | + | chr1_1:56065015-56065034 | Msa0030090:CDS | 50.0% | |
| CAGATTCAGGTGAGAGCTTG+AGG | - | chr1_1:56065089-56065108 | None:intergenic | 50.0% | |
| ! | GCTCGAGTTGCATTTGTTCC+AGG | - | chr1_1:56067880-56067899 | None:intergenic | 50.0% |
| AACCATAACCACGCCGAAGG+AGG | + | chr1_1:56065018-56065037 | Msa0030090:CDS | 55.0% | |
| ! | CACACGGTGAAAGCATGGTG+CGG | + | chr1_1:56065204-56065223 | Msa0030090:intron | 55.0% |
| GTGGAGCTCTATAGAGGCCT+TGG | + | chr1_1:56068012-56068031 | Msa0030090:CDS | 55.0% | |
| CTCCTCCTTCGGCGTGGTTA+TGG | - | chr1_1:56065023-56065042 | None:intergenic | 60.0% | |
| CATAACCACGCCGAAGGAGG+AGG | + | chr1_1:56065021-56065040 | Msa0030090:CDS | 60.0% | |
| CTTTCCCGCGTTCTCCAGCA+CGG | + | chr1_1:56067304-56067323 | Msa0030090:CDS | 60.0% | |
| TTTCCCGCGTTCTCCAGCAC+GGG | + | chr1_1:56067305-56067324 | Msa0030090:CDS | 60.0% | |
| AATCCCGTGCTGGAGAACGC+GGG | - | chr1_1:56067311-56067330 | None:intergenic | 60.0% | |
| GAATCCCGTGCTGGAGAACG+CGG | - | chr1_1:56067312-56067331 | None:intergenic | 60.0% | |
| TGGAACCTCCTCCTTCGGCG+TGG | - | chr1_1:56065029-56065048 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56064822 | 56068056 | 56064822 | ID=Msa0030090;Name=Msa0030090 |
| chr1_1 | mRNA | 56064822 | 56068056 | 56064822 | ID=Msa0030090-mRNA-1;Parent=Msa0030090;Name=Msa0030090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|0.75|1|1|1|4|0|296 |
| chr1_1 | exon | 56064822 | 56065134 | 56064822 | ID=Msa0030090-mRNA-1:exon:16736;Parent=Msa0030090-mRNA-1 |
| chr1_1 | exon | 56066925 | 56067005 | 56066925 | ID=Msa0030090-mRNA-1:exon:16737;Parent=Msa0030090-mRNA-1 |
| chr1_1 | exon | 56067111 | 56067345 | 56067111 | ID=Msa0030090-mRNA-1:exon:16738;Parent=Msa0030090-mRNA-1 |
| chr1_1 | exon | 56067722 | 56068056 | 56067722 | ID=Msa0030090-mRNA-1:exon:16739;Parent=Msa0030090-mRNA-1 |
| chr1_1 | five_prime_UTR | 56064822 | 56064894 | 56064822 | ID=Msa0030090-mRNA-1:five_prime_utr;Parent=Msa0030090-mRNA-1 |
| chr1_1 | CDS | 56064895 | 56065134 | 56064895 | ID=Msa0030090-mRNA-1:cds;Parent=Msa0030090-mRNA-1 |
| chr1_1 | CDS | 56066925 | 56067005 | 56066925 | ID=Msa0030090-mRNA-1:cds;Parent=Msa0030090-mRNA-1 |
| chr1_1 | CDS | 56067111 | 56067345 | 56067111 | ID=Msa0030090-mRNA-1:cds;Parent=Msa0030090-mRNA-1 |
| chr1_1 | CDS | 56067722 | 56068056 | 56067722 | ID=Msa0030090-mRNA-1:cds;Parent=Msa0030090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
