Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615530 | XP_013457346.1 | 81.034 | 348 | 25 | 3 | 1 | 348 | 1 | 307 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615530 | sp|P51373|YCF23_PORPU | 29.965 | 287 | 158 | 4 | 61 | 345 | 10 | 255 | 2.60e-45 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040410 | Msa0615530 | 0.810892 | 9.194518e-51 | -8.615850e-47 |
| Msa0084630 | Msa0615530 | 0.832773 | 7.806985e-56 | -8.615850e-47 |
| Msa0604700 | Msa0615530 | 0.806100 | 9.692342e-50 | -8.615850e-47 |
| Msa0609990 | Msa0615530 | 0.811582 | 6.515633e-51 | -8.615850e-47 |
| Msa0615530 | Msa0619330 | 0.806686 | 7.290613e-50 | -8.615850e-47 |
| Msa0615530 | Msa0645820 | 0.805449 | 1.327737e-49 | -8.615850e-47 |
| Msa0615530 | Msa0646570 | 0.810826 | 9.503009e-51 | -8.615850e-47 |
| Msa0615530 | Msa0646730 | 0.803981 | 2.689574e-49 | -8.615850e-47 |
| Msa0615530 | Msa0685540 | 0.815172 | 1.059064e-51 | -8.615850e-47 |
| Msa0615530 | Msa0686300 | 0.806156 | 9.430049e-50 | -8.615850e-47 |
| Msa0615530 | Msa0698580 | 0.989282 | 1.865062e-177 | -8.615850e-47 |
| Msa0615530 | Msa0698600 | 0.977255 | 2.040055e-143 | -8.615850e-47 |
| Msa0615530 | Msa0815750 | -0.803984 | 2.685086e-49 | -8.615850e-47 |
| Msa0615530 | Msa0856380 | -0.811962 | 5.385322e-51 | -8.615850e-47 |
| Msa0615530 | Msa0901140 | 0.804201 | 2.420237e-49 | -8.615850e-47 |
| Msa0615530 | Msa0910250 | -0.814318 | 1.637722e-51 | -8.615850e-47 |
| Msa0615530 | Msa0944690 | 0.824337 | 8.526196e-54 | -8.615850e-47 |
| Msa0615530 | Msa1029430 | 0.816418 | 5.588169e-52 | -8.615850e-47 |
| Msa0615530 | Msa1054890 | 0.800440 | 1.440075e-48 | -8.615850e-47 |
| Msa0615530 | Msa1068290 | 0.824251 | 8.933393e-54 | -8.615850e-47 |
| Msa0615530 | Msa1080620 | 0.811496 | 6.799209e-51 | -8.615850e-47 |
| Msa0615530 | Msa1080690 | 0.814473 | 1.513435e-51 | -8.615850e-47 |
| Msa0615530 | Msa1116010 | 0.824497 | 7.818351e-54 | -8.615850e-47 |
| Msa0615530 | Msa1162470 | 0.810756 | 9.841781e-51 | -8.615850e-47 |
| Msa0615530 | Msa1171060 | -0.813728 | 2.210150e-51 | -8.615850e-47 |
| Msa0615530 | Msa1194300 | 0.818943 | 1.505405e-52 | -8.615850e-47 |
| Msa0615530 | Msa1194330 | 0.818315 | 2.089619e-52 | -8.615850e-47 |
| Msa0615530 | Msa1238480 | 0.800258 | 1.567799e-48 | -8.615850e-47 |
| Msa0615530 | Msa1326000 | 0.808956 | 2.400135e-50 | -8.615850e-47 |
| Msa0172370 | Msa0615530 | 0.821513 | 3.880663e-53 | -8.615850e-47 |
| Msa0181090 | Msa0615530 | 0.812998 | 3.196445e-51 | -8.615850e-47 |
| Msa0212550 | Msa0615530 | -0.814917 | 1.206924e-51 | -8.615850e-47 |
| Msa0367370 | Msa0615530 | 0.828066 | 1.104913e-54 | -8.615850e-47 |
| Msa0382500 | Msa0615530 | 0.807249 | 5.543554e-50 | -8.615850e-47 |
| Msa0432680 | Msa0615530 | 0.803587 | 3.246450e-49 | -8.615850e-47 |
| Msa0446480 | Msa0615530 | 0.802256 | 6.114850e-49 | -8.615850e-47 |
| Msa0470350 | Msa0615530 | -0.804823 | 1.795102e-49 | -8.615850e-47 |
| Msa0252930 | Msa0615530 | -0.818042 | 2.408988e-52 | -8.615850e-47 |
| Msa0285740 | Msa0615530 | 0.823353 | 1.450266e-53 | -8.615850e-47 |
| Msa0312780 | Msa0615530 | 0.813680 | 2.264348e-51 | -8.615850e-47 |
| Msa0352200 | Msa0615530 | 0.829516 | 4.926834e-55 | -8.615850e-47 |
| Msa0512130 | Msa0615530 | 0.801678 | 8.041225e-49 | -8.615850e-47 |
| Msa0524050 | Msa0615530 | 0.804268 | 2.343955e-49 | -8.615850e-47 |
| Msa0575250 | Msa0615530 | 0.800471 | 1.419251e-48 | -8.615850e-47 |
| Msa0589600 | Msa0615530 | 0.816285 | 5.985038e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615530 | MtrunA17_Chr4g0052021 | 81.034 | 348 | 25 | 3 | 1 | 348 | 1 | 307 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAGCAGTTCTTATATTTA+AGG | 0.117869 | 4_2:+65008577 | None:intergenic |
| GAAATGATTAATGAGCTATT+TGG | 0.192176 | 4_2:-65008460 | Msa0615530:three_prime_UTR |
| CATAACTACAACCCTTTATT+AGG | 0.204262 | 4_2:-65011516 | Msa0615530:CDS |
| AAATGATTAATGAGCTATTT+GGG | 0.221655 | 4_2:-65008459 | Msa0615530:three_prime_UTR |
| CCTACAAAGTCTGGTGTTCT+TGG | 0.228685 | 4_2:-65009573 | Msa0615530:CDS |
| ATCCTTAAGGACAGATTCTT+TGG | 0.242936 | 4_2:+65011419 | None:intergenic |
| GGAATAGCTTAAGGTGGTTT+AGG | 0.279304 | 4_2:-65008636 | Msa0615530:three_prime_UTR |
| GCTATTACTGCTGGAGCTTC+TGG | 0.292461 | 4_2:-65008933 | Msa0615530:CDS |
| TTTGAGGTTGCACCTAATAA+AGG | 0.298703 | 4_2:+65011504 | None:intergenic |
| CTAATAAAGGGTTGTAGTTA+TGG | 0.300366 | 4_2:+65011517 | None:intergenic |
| TTGTAGTTTGTGTTTCTGTA+TGG | 0.322497 | 4_2:-65008510 | Msa0615530:three_prime_UTR |
| TAAAACTTGTGAAGAAAATC+TGG | 0.347239 | 4_2:-65008606 | Msa0615530:three_prime_UTR |
| CCAAGAACACCAGACTTTGT+AGG | 0.348475 | 4_2:+65009573 | None:intergenic |
| ACTTCCAGTAGTTCAATATA+TGG | 0.380665 | 4_2:-65008661 | Msa0615530:exon |
| TTGCATTGGCAGGTTGAGAT+TGG | 0.389554 | 4_2:-65010251 | Msa0615530:intron |
| AGAAAGTGTTAGGCATGTTA+AGG | 0.406358 | 4_2:+65011572 | None:intergenic |
| AAATCACTCTTTACCTGCTC+TGG | 0.408496 | 4_2:+65010188 | None:intergenic |
| ATGCTGCATGTAACCTGATC+GGG | 0.408784 | 4_2:+65009754 | None:intergenic |
| AACCAAAGAATCTGTCCTTA+AGG | 0.412479 | 4_2:-65011421 | Msa0615530:CDS |
| TGTTCCAATCCTACAAAGTC+TGG | 0.415836 | 4_2:-65009582 | Msa0615530:CDS |
| AAAGGGTTGTAGTTATGGTT+TGG | 0.417950 | 4_2:+65011522 | None:intergenic |
| ATACCTGTCATGTGTTCATC+CGG | 0.423217 | 4_2:-65008981 | Msa0615530:CDS |
| TAATGCTCTAGTAGTAAAAC+AGG | 0.424552 | 4_2:+65011452 | None:intergenic |
| CCTTCCATATATTGAACTAC+TGG | 0.424565 | 4_2:+65008657 | None:intergenic |
| TTGAGGTTGCACCTAATAAA+GGG | 0.429461 | 4_2:+65011505 | None:intergenic |
| AAGAAGGAGAAGAAAGTGTT+AGG | 0.435183 | 4_2:+65011562 | None:intergenic |
| AACACCAGACTTTGTAGGAT+TGG | 0.437626 | 4_2:+65009578 | None:intergenic |
| TTTAGAGATGAGATTGAAGA+AGG | 0.438632 | 4_2:+65011546 | None:intergenic |
| AGTTGAAGCAGGAGCACTAA+TGG | 0.440355 | 4_2:-65010393 | Msa0615530:intron |
| GCTTCATACATGCACTACTT+TGG | 0.452554 | 4_2:+65008376 | None:intergenic |
| GCAGAGTCACTTGAGCTAGA+AGG | 0.458858 | 4_2:-65009636 | Msa0615530:CDS |
| TATATGGAAGGAATAGCTTA+AGG | 0.467712 | 4_2:-65008645 | Msa0615530:three_prime_UTR |
| CACACTAAGCCTCCCCGATC+AGG | 0.470546 | 4_2:-65009767 | Msa0615530:intron |
| TGTAGTTTGTGTTTCTGTAT+GGG | 0.471566 | 4_2:-65008509 | Msa0615530:three_prime_UTR |
| GCTTCTAACTTCAGCAATCA+TGG | 0.475487 | 4_2:+65008742 | None:intergenic |
| AGTTGTCACTGCCGCAGAAA+AGG | 0.478390 | 4_2:-65011218 | Msa0615530:CDS |
| TTTCCAGCTGCAGTTGAAGC+AGG | 0.479631 | 4_2:-65010404 | Msa0615530:CDS |
| TATCAGCCTAACTTCTTGTC+CGG | 0.480062 | 4_2:-65010683 | Msa0615530:CDS |
| ATTTACAGTACTCTTAAAAG+AGG | 0.485562 | 4_2:-65010486 | Msa0615530:intron |
| GCTCCTGCTTCAACTGCAGC+TGG | 0.485920 | 4_2:+65010401 | None:intergenic |
| TTCGTTCGCGAAAATCCTTA+AGG | 0.486671 | 4_2:+65011406 | None:intergenic |
| TGCTTCTTAATGAATGGAGT+TGG | 0.491886 | 4_2:-65008430 | Msa0615530:three_prime_UTR |
| ACAGAAGTCTAAAATAGAAA+AGG | 0.492536 | 4_2:+65008538 | None:intergenic |
| ATAGCTAGCTTCACCAACTC+CGG | 0.493148 | 4_2:+65010703 | None:intergenic |
| TGCTGTGACAGCACTTAGCC+CGG | 0.502968 | 4_2:+65008962 | None:intergenic |
| GCACCTATGGCTATTACTGC+TGG | 0.514275 | 4_2:-65008942 | Msa0615530:CDS |
| GAATATGCAGCTGCTAAAGT+TGG | 0.515315 | 4_2:+65009023 | None:intergenic |
| AAGTGCTGTCACAGCACCTA+TGG | 0.524433 | 4_2:-65008955 | Msa0615530:CDS |
| AGGTAGTAGACATGGCTTTG+AGG | 0.531491 | 4_2:+65011488 | None:intergenic |
| GACACACACTACACATGAAG+TGG | 0.532067 | 4_2:-65008690 | Msa0615530:CDS |
| AATATACCGGACAAGAAGTT+AGG | 0.532876 | 4_2:+65010677 | None:intergenic |
| TCGCGAACGAACAGCTCTCA+AGG | 0.535029 | 4_2:-65011394 | Msa0615530:CDS |
| GTCACTTGAGCTAGAAGGTG+TGG | 0.539178 | 4_2:-65009631 | Msa0615530:CDS |
| GCAGTTCTTATATTTAAGGA+AGG | 0.540309 | 4_2:+65008581 | None:intergenic |
| AGCTGCATATTCTATATCAC+GGG | 0.546779 | 4_2:-65009012 | Msa0615530:CDS |
| TATAGCATGTGACCCGGAGT+TGG | 0.553762 | 4_2:-65010716 | Msa0615530:CDS |
| GAAGTCTAAAATAGAAAAGG+AGG | 0.572131 | 4_2:+65008541 | None:intergenic |
| TGTTCTTGGTTTGATTGAGA+AGG | 0.574982 | 4_2:-65009559 | Msa0615530:intron |
| AATGCTGCATGTAACCTGAT+CGG | 0.576394 | 4_2:+65009753 | None:intergenic |
| GCTCCAGCAGTAATAGCCAT+AGG | 0.583979 | 4_2:+65008939 | None:intergenic |
| CAGCTGCATATTCTATATCA+CGG | 0.584342 | 4_2:-65009013 | Msa0615530:CDS |
| TACCTGTCATGTGTTCATCC+GGG | 0.584674 | 4_2:-65008980 | Msa0615530:CDS |
| TAGCTAGCTTCACCAACTCC+GGG | 0.587229 | 4_2:+65010704 | None:intergenic |
| GTGGATATTATTCAAACTGA+GGG | 0.588223 | 4_2:-65009612 | Msa0615530:CDS |
| CCAGTAGTTCAATATATGGA+AGG | 0.595574 | 4_2:-65008657 | Msa0615530:exon |
| GTGACAGACAAAACCACAGA+TGG | 0.596456 | 4_2:+65009799 | None:intergenic |
| TACTGCTGGAGCTTCTGGTG+TGG | 0.598767 | 4_2:-65008928 | Msa0615530:intron |
| AGCCCGGATGAACACATGAC+AGG | 0.601051 | 4_2:+65008978 | None:intergenic |
| ATGGAAGGAATAGCTTAAGG+TGG | 0.605964 | 4_2:-65008642 | Msa0615530:three_prime_UTR |
| CCTTAAATATAAGAACTGCT+AGG | 0.606767 | 4_2:-65008577 | Msa0615530:three_prime_UTR |
| GATATTATTCAAACTGAGGG+AGG | 0.610367 | 4_2:-65009609 | Msa0615530:CDS |
| AATGATTAATGAGCTATTTG+GGG | 0.614047 | 4_2:-65008458 | Msa0615530:three_prime_UTR |
| ATGATTAATGAGCTATTTGG+GGG | 0.614442 | 4_2:-65008457 | Msa0615530:three_prime_UTR |
| CATGTGTAGTGTGTGTCGGA+AGG | 0.614667 | 4_2:+65008696 | None:intergenic |
| AATACTAGAGCACTAATCAT+CGG | 0.617345 | 4_2:+65011150 | None:intergenic |
| ATGTGTAGTGTGTGTCGGAA+GGG | 0.619185 | 4_2:+65008697 | None:intergenic |
| AAGGAGGATACTTCCATCTG+TGG | 0.621807 | 4_2:-65009812 | Msa0615530:CDS |
| TGTGGATATTATTCAAACTG+AGG | 0.627720 | 4_2:-65009613 | Msa0615530:CDS |
| ATTTCCAAATCACAGGGTGT+GGG | 0.629293 | 4_2:-65008797 | Msa0615530:intron |
| ACTTCATGTGTAGTGTGTGT+CGG | 0.634907 | 4_2:+65008692 | None:intergenic |
| CGTCGATATAGCATGTGACC+CGG | 0.645562 | 4_2:-65010722 | Msa0615530:CDS |
| TCGGGGAGGCTTAGTGTGTG+AGG | 0.656802 | 4_2:+65009772 | None:intergenic |
| GTCTAACAAAAGAGACAAGG+AGG | 0.671548 | 4_2:-65009828 | Msa0615530:CDS |
| TGCTGCATGTAACCTGATCG+GGG | 0.675641 | 4_2:+65009755 | None:intergenic |
| TGATTAATGAGCTATTTGGG+GGG | 0.680744 | 4_2:-65008456 | Msa0615530:three_prime_UTR |
| TGAGTCTAACAAAAGAGACA+AGG | 0.682958 | 4_2:-65009831 | Msa0615530:CDS |
| TTCTGCGGCAGTGACAACTG+AGG | 0.690999 | 4_2:+65011222 | None:intergenic |
| AGTTAACAAACTAAATGACG+TGG | 0.729283 | 4_2:-65008768 | Msa0615530:CDS |
| TGCATGTAACCTGATCGGGG+AGG | 0.747094 | 4_2:+65009758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATCACTTAAAATT+TGG | + | chr4_2:65009109-65009128 | None:intergenic | 10.0% |
| !! | TTTACAGTAAAAAAATTATT+GGG | + | chr4_2:65011050-65011069 | None:intergenic | 10.0% |
| !! | ATTTACAGTAAAAAAATTAT+TGG | + | chr4_2:65011051-65011070 | None:intergenic | 10.0% |
| !! | ATCTTAATCATTTATAAAGT+TGG | - | chr4_2:65009395-65009414 | Msa0615530:intron | 15.0% |
| !!! | TTTTAAACCATTTTGAAAAT+TGG | + | chr4_2:65010502-65010521 | None:intergenic | 15.0% |
| !! | ATTTACTATATAATGTTAGT+TGG | + | chr4_2:65010721-65010740 | None:intergenic | 15.0% |
| !!! | AATTTTGATGATTTAAAGAA+GGG | + | chr4_2:65010871-65010890 | None:intergenic | 15.0% |
| !! | ATGAAAAATGAGATAGAAAA+GGG | + | chr4_2:65008591-65008610 | None:intergenic | 20.0% |
| !! | AATGAAAAATGAGATAGAAA+AGG | + | chr4_2:65008592-65008611 | None:intergenic | 20.0% |
| !!! | TGTGTATGTTGATAAATATT+TGG | - | chr4_2:65008643-65008662 | Msa0615530:three_prime_UTR | 20.0% |
| !! | TTAGAAAAACTTGAATATAC+CGG | + | chr4_2:65009279-65009298 | None:intergenic | 20.0% |
| !! | CTACAAAATTTACTAATCAT+AGG | - | chr4_2:65009370-65009389 | Msa0615530:intron | 20.0% |
| !!! | GGATGAATTTTAAATGTTTA+TGG | + | chr4_2:65009643-65009662 | None:intergenic | 20.0% |
| !! | TGTTAAGAACAAATCTTATA+AGG | + | chr4_2:65009664-65009683 | None:intergenic | 20.0% |
| !! | TTCTTAACATTATATTGCAT+TGG | - | chr4_2:65009675-65009694 | Msa0615530:intron | 20.0% |
| !!! | TTATGATTCATTTTATGAGA+AGG | - | chr4_2:65009715-65009734 | Msa0615530:intron | 20.0% |
| !!! | TATGATTCATTTTATGAGAA+GGG | - | chr4_2:65009716-65009735 | Msa0615530:intron | 20.0% |
| !! | CAAAATTATTCTGATACTAT+TGG | - | chr4_2:65010225-65010244 | Msa0615530:CDS | 20.0% |
| !! | AAAAAAACTTAAACTTTGAC+AGG | - | chr4_2:65010273-65010292 | Msa0615530:intron | 20.0% |
| !! | ATCATTATCTAGCAATTAAA+AGG | + | chr4_2:65010831-65010850 | None:intergenic | 20.0% |
| !!! | GAATTTTGATGATTTAAAGA+AGG | + | chr4_2:65010872-65010891 | None:intergenic | 20.0% |
| !! | AAATGATTAATGAGCTATTT+GGG | - | chr4_2:65011481-65011500 | Msa0615530:CDS | 20.0% |
| !! | AAACAGGTTTTTCTTTTCAA+AGG | + | chr4_2:65008475-65008494 | None:intergenic | 25.0% |
| ! | CATACACATTACAACATTTA+TGG | + | chr4_2:65008631-65008650 | None:intergenic | 25.0% |
| !! | ATCTTGAAGTGCTTTAAATT+TGG | - | chr4_2:65008905-65008924 | Msa0615530:intron | 25.0% |
| !! | ATTTAGAATGATCTTCTGTT+TGG | - | chr4_2:65009042-65009061 | Msa0615530:intron | 25.0% |
| !! | TTTAGAATGATCTTCTGTTT+GGG | - | chr4_2:65009043-65009062 | Msa0615530:intron | 25.0% |
| ! | AAATATCTTGAAGATTCAAG+AGG | + | chr4_2:65009072-65009091 | None:intergenic | 25.0% |
| ! | ATTTACAGTACTCTTAAAAG+AGG | - | chr4_2:65009454-65009473 | Msa0615530:intron | 25.0% |
| !! | ATCAGAATAATTTTGCACTT+TGG | + | chr4_2:65010220-65010239 | None:intergenic | 25.0% |
| ! | TAATGAAAATGTAGGCAATT+AGG | + | chr4_2:65010444-65010463 | None:intergenic | 25.0% |
| ! | ATTTCCAGTAATGAAAATGT+AGG | + | chr4_2:65010452-65010471 | None:intergenic | 25.0% |
| !! | TTCTAATCACTGATTATTGT+AGG | - | chr4_2:65010889-65010908 | Msa0615530:intron | 25.0% |
| ! | TAAAACTTGTGAAGAAAATC+TGG | - | chr4_2:65011334-65011353 | Msa0615530:intron | 25.0% |
| !! | ACAGAAGTCTAAAATAGAAA+AGG | + | chr4_2:65011405-65011424 | None:intergenic | 25.0% |
| ! | GAAATGATTAATGAGCTATT+TGG | - | chr4_2:65011480-65011499 | Msa0615530:CDS | 25.0% |
| ! | AATGATTAATGAGCTATTTG+GGG | - | chr4_2:65011482-65011501 | Msa0615530:CDS | 25.0% |
| TTTAGAGATGAGATTGAAGA+AGG | + | chr4_2:65008397-65008416 | None:intergenic | 30.0% | |
| CTAATAAAGGGTTGTAGTTA+TGG | + | chr4_2:65008426-65008445 | None:intergenic | 30.0% | |
| CATAACTACAACCCTTTATT+AGG | - | chr4_2:65008424-65008443 | Msa0615530:three_prime_UTR | 30.0% | |
| TAATGCTCTAGTAGTAAAAC+AGG | + | chr4_2:65008491-65008510 | None:intergenic | 30.0% | |
| !! | CTTCTTTTGAAGATTATCAC+AGG | - | chr4_2:65008666-65008685 | Msa0615530:exon | 30.0% |
| ! | AATACTAGAGCACTAATCAT+CGG | + | chr4_2:65008793-65008812 | None:intergenic | 30.0% |
| ! | TCTAGAAGCATATTTCAATC+AGG | - | chr4_2:65008944-65008963 | Msa0615530:CDS | 30.0% |
| ATACATCTGAGGAAGATAAA+AGG | + | chr4_2:65008985-65009004 | None:intergenic | 30.0% | |
| GTCTTTAACACTCGTTTATA+TGG | - | chr4_2:65009304-65009323 | Msa0615530:intron | 30.0% | |
| !! | TTTTGACTAGAGTATGAACT+TGG | + | chr4_2:65009610-65009629 | None:intergenic | 30.0% |
| TTCATACTCTAGTCAAAAGA+TGG | - | chr4_2:65009612-65009631 | Msa0615530:CDS | 30.0% | |
| TCATACTCTAGTCAAAAGAT+GGG | - | chr4_2:65009613-65009632 | Msa0615530:CDS | 30.0% | |
| ! | TAACATTATATTGCATTGGC+AGG | - | chr4_2:65009679-65009698 | Msa0615530:intron | 30.0% |
| ACTTTCAGTATACCTAATGA+TGG | + | chr4_2:65009896-65009915 | None:intergenic | 30.0% | |
| TGTGGATATTATTCAAACTG+AGG | - | chr4_2:65010327-65010346 | Msa0615530:intron | 30.0% | |
| GTGGATATTATTCAAACTGA+GGG | - | chr4_2:65010328-65010347 | Msa0615530:intron | 30.0% | |
| ! | ATTGCCTACATTTTCATTAC+TGG | - | chr4_2:65010445-65010464 | Msa0615530:CDS | 30.0% |
| ! | GATTGTGCCAATTTTCAAAA+TGG | - | chr4_2:65010492-65010511 | Msa0615530:intron | 30.0% |
| !! | TTTTAGATTGAAAGTGTGTC+AGG | + | chr4_2:65010673-65010692 | None:intergenic | 30.0% |
| ATGAACTTACTATACCTTTC+TGG | - | chr4_2:65011085-65011104 | Msa0615530:intron | 30.0% | |
| !! | ATTGATCATTGACTTCTGTT+CGG | - | chr4_2:65011117-65011136 | Msa0615530:intron | 30.0% |
| AGTTAACAAACTAAATGACG+TGG | - | chr4_2:65011172-65011191 | Msa0615530:CDS | 30.0% | |
| ACTTCCAGTAGTTCAATATA+TGG | - | chr4_2:65011279-65011298 | Msa0615530:intron | 30.0% | |
| TATATGGAAGGAATAGCTTA+AGG | - | chr4_2:65011295-65011314 | Msa0615530:intron | 30.0% | |
| GCAGTTCTTATATTTAAGGA+AGG | + | chr4_2:65011362-65011381 | None:intergenic | 30.0% | |
| CCTAGCAGTTCTTATATTTA+AGG | + | chr4_2:65011366-65011385 | None:intergenic | 30.0% | |
| CCTTAAATATAAGAACTGCT+AGG | - | chr4_2:65011363-65011382 | Msa0615530:intron | 30.0% | |
| TAGAAAAGGAGGAAAAAAGA+TGG | + | chr4_2:65011391-65011410 | None:intergenic | 30.0% | |
| ! | GAAGTCTAAAATAGAAAAGG+AGG | + | chr4_2:65011402-65011421 | None:intergenic | 30.0% |
| ! | TTGTAGTTTGTGTTTCTGTA+TGG | - | chr4_2:65011430-65011449 | Msa0615530:CDS | 30.0% |
| ! | TGTAGTTTGTGTTTCTGTAT+GGG | - | chr4_2:65011431-65011450 | Msa0615530:CDS | 30.0% |
| ATGATTAATGAGCTATTTGG+GGG | - | chr4_2:65011483-65011502 | Msa0615530:CDS | 30.0% | |
| !! | AGAAAGTGTTAGGCATGTTA+AGG | + | chr4_2:65008371-65008390 | None:intergenic | 35.0% |
| !! | AAGAAGGAGAAGAAAGTGTT+AGG | + | chr4_2:65008381-65008400 | None:intergenic | 35.0% |
| AAAGGGTTGTAGTTATGGTT+TGG | + | chr4_2:65008421-65008440 | None:intergenic | 35.0% | |
| TTGAGGTTGCACCTAATAAA+GGG | + | chr4_2:65008438-65008457 | None:intergenic | 35.0% | |
| ! | TTTGAGGTTGCACCTAATAA+AGG | + | chr4_2:65008439-65008458 | None:intergenic | 35.0% |
| ! | CTTTTCAAAGGTAGTAGACA+TGG | + | chr4_2:65008463-65008482 | None:intergenic | 35.0% |
| AACCAAAGAATCTGTCCTTA+AGG | - | chr4_2:65008519-65008538 | Msa0615530:three_prime_UTR | 35.0% | |
| ATCCTTAAGGACAGATTCTT+TGG | + | chr4_2:65008524-65008543 | None:intergenic | 35.0% | |
| ! | AGATAGAAAAGGGTTTTGCA+TGG | + | chr4_2:65008581-65008600 | None:intergenic | 35.0% |
| ! | GAAGTAAAGAACCTTTTCTG+CGG | + | chr4_2:65008736-65008755 | None:intergenic | 35.0% |
| AATATACCGGACAAGAAGTT+AGG | + | chr4_2:65009266-65009285 | None:intergenic | 35.0% | |
| GTTTCTTGACTTAAGCATAG+AGG | - | chr4_2:65009326-65009345 | Msa0615530:intron | 35.0% | |
| TGGAAATGGAACTAGACAAA+AGG | + | chr4_2:65009578-65009597 | None:intergenic | 35.0% | |
| TATGAACTTGGAACTGATAC+TGG | + | chr4_2:65009598-65009617 | None:intergenic | 35.0% | |
| TCAGTATACCTAATGATGGT+TGG | + | chr4_2:65009892-65009911 | None:intergenic | 35.0% | |
| TGAGTCTAACAAAAGAGACA+AGG | - | chr4_2:65010109-65010128 | Msa0615530:intron | 35.0% | |
| GATATTATTCAAACTGAGGG+AGG | - | chr4_2:65010331-65010350 | Msa0615530:intron | 35.0% | |
| ! | TGTTCTTGGTTTGATTGAGA+AGG | - | chr4_2:65010381-65010400 | Msa0615530:intron | 35.0% |
| CAGCTGCATATTCTATATCA+CGG | - | chr4_2:65010927-65010946 | Msa0615530:intron | 35.0% | |
| AGCTGCATATTCTATATCAC+GGG | - | chr4_2:65010928-65010947 | Msa0615530:intron | 35.0% | |
| AGTCAATGATCAATAACTCG+CGG | + | chr4_2:65011111-65011130 | None:intergenic | 35.0% | |
| CCTTCCATATATTGAACTAC+TGG | + | chr4_2:65011286-65011305 | None:intergenic | 35.0% | |
| CCAGTAGTTCAATATATGGA+AGG | - | chr4_2:65011283-65011302 | Msa0615530:intron | 35.0% | |
| TGATTAATGAGCTATTTGGG+GGG | - | chr4_2:65011484-65011503 | Msa0615530:CDS | 35.0% | |
| ! | GGGTTTTGCTTCTTAATGAA+TGG | - | chr4_2:65011504-65011523 | Msa0615530:CDS | 35.0% |
| TGCTTCTTAATGAATGGAGT+TGG | - | chr4_2:65011510-65011529 | Msa0615530:CDS | 35.0% | |
| TTCGTTCGCGAAAATCCTTA+AGG | + | chr4_2:65008537-65008556 | None:intergenic | 40.0% | |
| GGAAGATAAAAGGAGACTTC+AGG | + | chr4_2:65008975-65008994 | None:intergenic | 40.0% | |
| GCTTATCAGCTATACATCTG+AGG | + | chr4_2:65008996-65009015 | None:intergenic | 40.0% | |
| TATCAGCCTAACTTCTTGTC+CGG | - | chr4_2:65009257-65009276 | Msa0615530:intron | 40.0% | |
| TGACTTAAGCATAGAGGAAC+TGG | - | chr4_2:65009332-65009351 | Msa0615530:intron | 40.0% | |
| AGAGGAACTGGAAAATGCAT+TGG | - | chr4_2:65009344-65009363 | Msa0615530:intron | 40.0% | |
| CTTGGAACTGATACTGGAAA+TGG | + | chr4_2:65009592-65009611 | None:intergenic | 40.0% | |
| ! | AGTGATTTTTACTCCAGAGC+AGG | - | chr4_2:65009739-65009758 | Msa0615530:intron | 40.0% |
| AAATCACTCTTTACCTGCTC+TGG | + | chr4_2:65009755-65009774 | None:intergenic | 40.0% | |
| ACTGTCAACCAACCATCATT+AGG | - | chr4_2:65009881-65009900 | Msa0615530:intron | 40.0% | |
| GTCTAACAAAAGAGACAAGG+AGG | - | chr4_2:65010112-65010131 | Msa0615530:intron | 40.0% | |
| AATGCTGCATGTAACCTGAT+CGG | + | chr4_2:65010190-65010209 | None:intergenic | 40.0% | |
| TGTTCCAATCCTACAAAGTC+TGG | - | chr4_2:65010358-65010377 | Msa0615530:intron | 40.0% | |
| AACACCAGACTTTGTAGGAT+TGG | + | chr4_2:65010365-65010384 | None:intergenic | 40.0% | |
| AGGCAATTAGGAAAAGACAC+AGG | + | chr4_2:65010432-65010451 | None:intergenic | 40.0% | |
| CCACTATGTTAGTACTTCGT+AGG | + | chr4_2:65010525-65010544 | None:intergenic | 40.0% | |
| ! | CCTACGAAGTACTAACATAG+TGG | - | chr4_2:65010522-65010541 | Msa0615530:intron | 40.0% |
| GAATATGCAGCTGCTAAAGT+TGG | + | chr4_2:65010920-65010939 | None:intergenic | 40.0% | |
| ATACCTGTCATGTGTTCATC+CGG | - | chr4_2:65010959-65010978 | Msa0615530:intron | 40.0% | |
| TCGGTGTATTTCCAAATCAC+AGG | - | chr4_2:65011136-65011155 | Msa0615530:intron | 40.0% | |
| CGGTGTATTTCCAAATCACA+GGG | - | chr4_2:65011137-65011156 | Msa0615530:intron | 40.0% | |
| TATTTCCAAATCACAGGGTG+TGG | - | chr4_2:65011142-65011161 | Msa0615530:intron | 40.0% | |
| ATTTCCAAATCACAGGGTGT+GGG | - | chr4_2:65011143-65011162 | Msa0615530:intron | 40.0% | |
| GCTTCTAACTTCAGCAATCA+TGG | + | chr4_2:65011201-65011220 | None:intergenic | 40.0% | |
| ACTTCATGTGTAGTGTGTGT+CGG | + | chr4_2:65011251-65011270 | None:intergenic | 40.0% | |
| ATGGAAGGAATAGCTTAAGG+TGG | - | chr4_2:65011298-65011317 | Msa0615530:intron | 40.0% | |
| GGAATAGCTTAAGGTGGTTT+AGG | - | chr4_2:65011304-65011323 | Msa0615530:intron | 40.0% | |
| GCTTCATACATGCACTACTT+TGG | + | chr4_2:65011567-65011586 | None:intergenic | 40.0% | |
| ! | AGGTAGTAGACATGGCTTTG+AGG | + | chr4_2:65008455-65008474 | None:intergenic | 45.0% |
| ! | ATAGCTAGCTTCACCAACTC+CGG | + | chr4_2:65009240-65009259 | None:intergenic | 45.0% |
| ! | ACTGCAGCTGGAAATTTTGC+AGG | + | chr4_2:65009530-65009549 | None:intergenic | 45.0% |
| !! | AGTTGAAGCAGGAGCACTAA+TGG | - | chr4_2:65009547-65009566 | Msa0615530:intron | 45.0% |
| ! | TTGCATTGGCAGGTTGAGAT+TGG | - | chr4_2:65009689-65009708 | Msa0615530:intron | 45.0% |
| AGACTCAGAATCTGCACAGA+AGG | + | chr4_2:65010096-65010115 | None:intergenic | 45.0% | |
| AAGGAGGATACTTCCATCTG+TGG | - | chr4_2:65010128-65010147 | Msa0615530:intron | 45.0% | |
| GTGACAGACAAAACCACAGA+TGG | + | chr4_2:65010144-65010163 | None:intergenic | 45.0% | |
| ATGCTGCATGTAACCTGATC+GGG | + | chr4_2:65010189-65010208 | None:intergenic | 45.0% | |
| CCAAGAACACCAGACTTTGT+AGG | + | chr4_2:65010370-65010389 | None:intergenic | 45.0% | |
| CCTACAAAGTCTGGTGTTCT+TGG | - | chr4_2:65010367-65010386 | Msa0615530:intron | 45.0% | |
| ! | GATTGAAAGTGTGTCAGGTC+AGG | + | chr4_2:65010668-65010687 | None:intergenic | 45.0% |
| TACCTGTCATGTGTTCATCC+GGG | - | chr4_2:65010960-65010979 | Msa0615530:intron | 45.0% | |
| ATGTGTAGTGTGTGTCGGAA+GGG | + | chr4_2:65011246-65011265 | None:intergenic | 45.0% | |
| GACACACACTACACATGAAG+TGG | - | chr4_2:65011250-65011269 | Msa0615530:CDS | 45.0% | |
| AGTTGTCACTGCCGCAGAAA+AGG | - | chr4_2:65008722-65008741 | Msa0615530:CDS | 50.0% | |
| TTGTCAATGCCGTGCTTGCA+GGG | - | chr4_2:65009183-65009202 | Msa0615530:intron | 50.0% | |
| CGTCGATATAGCATGTGACC+CGG | - | chr4_2:65009218-65009237 | Msa0615530:intron | 50.0% | |
| TATAGCATGTGACCCGGAGT+TGG | - | chr4_2:65009224-65009243 | Msa0615530:intron | 50.0% | |
| ! | TAGCTAGCTTCACCAACTCC+GGG | + | chr4_2:65009239-65009258 | None:intergenic | 50.0% |
| TTTCCAGCTGCAGTTGAAGC+AGG | - | chr4_2:65009536-65009555 | Msa0615530:intron | 50.0% | |
| TGCTGCATGTAACCTGATCG+GGG | + | chr4_2:65010188-65010207 | None:intergenic | 50.0% | |
| GCAGAGTCACTTGAGCTAGA+AGG | - | chr4_2:65010304-65010323 | Msa0615530:intron | 50.0% | |
| GTCACTTGAGCTAGAAGGTG+TGG | - | chr4_2:65010309-65010328 | Msa0615530:intron | 50.0% | |
| ! | CTACGTACAAGTGTCGCATC+TGG | + | chr4_2:65010562-65010581 | None:intergenic | 50.0% |
| ! | AAGTGCTGTCACAGCACCTA+TGG | - | chr4_2:65010985-65011004 | Msa0615530:intron | 50.0% |
| GCACCTATGGCTATTACTGC+TGG | - | chr4_2:65010998-65011017 | Msa0615530:intron | 50.0% | |
| GCTCCAGCAGTAATAGCCAT+AGG | + | chr4_2:65011004-65011023 | None:intergenic | 50.0% | |
| GCTATTACTGCTGGAGCTTC+TGG | - | chr4_2:65011007-65011026 | Msa0615530:intron | 50.0% | |
| TCAATAACTCGCGGCCAGAA+AGG | + | chr4_2:65011102-65011121 | None:intergenic | 50.0% | |
| CATGTGTAGTGTGTGTCGGA+AGG | + | chr4_2:65011247-65011266 | None:intergenic | 50.0% | |
| TCGCGAACGAACAGCTCTCA+AGG | - | chr4_2:65008546-65008565 | Msa0615530:three_prime_UTR | 55.0% | |
| TTCTGCGGCAGTGACAACTG+AGG | + | chr4_2:65008721-65008740 | None:intergenic | 55.0% | |
| CTTGTCAATGCCGTGCTTGC+AGG | - | chr4_2:65009182-65009201 | Msa0615530:intron | 55.0% | |
| TGCATGTAACCTGATCGGGG+AGG | + | chr4_2:65010185-65010204 | None:intergenic | 55.0% | |
| AGCCCGGATGAACACATGAC+AGG | + | chr4_2:65010965-65010984 | None:intergenic | 55.0% | |
| TGCTGTGACAGCACTTAGCC+CGG | + | chr4_2:65010981-65011000 | None:intergenic | 55.0% | |
| TACTGCTGGAGCTTCTGGTG+TGG | - | chr4_2:65011012-65011031 | Msa0615530:intron | 55.0% | |
| CTGGAGCTTCTGGTGTGGTA+AGG | - | chr4_2:65011017-65011036 | Msa0615530:intron | 55.0% | |
| AGAGCCCACACCCTGTGATT+TGG | + | chr4_2:65011150-65011169 | None:intergenic | 55.0% | |
| TCAATGCCGTGCTTGCAGGG+AGG | - | chr4_2:65009186-65009205 | Msa0615530:intron | 60.0% | |
| GTTGCTCCTCCCTGCAAGCA+CGG | + | chr4_2:65009195-65009214 | None:intergenic | 60.0% | |
| GCTCCTGCTTCAACTGCAGC+TGG | + | chr4_2:65009542-65009561 | None:intergenic | 60.0% | |
| TCGGGGAGGCTTAGTGTGTG+AGG | + | chr4_2:65010171-65010190 | None:intergenic | 60.0% | |
| CACACTAAGCCTCCCCGATC+AGG | - | chr4_2:65010173-65010192 | Msa0615530:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65008361 | 65011601 | 65008361 | ID=Msa0615530;Name=Msa0615530 |
| chr4_2 | mRNA | 65008361 | 65011601 | 65008361 | ID=Msa0615530-mRNA-1;Parent=Msa0615530;Name=Msa0615530-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.62|0.55|1|1|1|9|312|348 |
| chr4_2 | exon | 65008361 | 65008804 | 65008361 | ID=Msa0615530-mRNA-1:exon:18366;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65008929 | 65009051 | 65008929 | ID=Msa0615530-mRNA-1:exon:18365;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65009560 | 65009667 | 65009560 | ID=Msa0615530-mRNA-1:exon:18364;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65009768 | 65009857 | 65009768 | ID=Msa0615530-mRNA-1:exon:18363;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65010202 | 65010261 | 65010202 | ID=Msa0615530-mRNA-1:exon:18362;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65010394 | 65010500 | 65010394 | ID=Msa0615530-mRNA-1:exon:18361;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65010674 | 65010758 | 65010674 | ID=Msa0615530-mRNA-1:exon:18360;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65011155 | 65011284 | 65011155 | ID=Msa0615530-mRNA-1:exon:18359;Parent=Msa0615530-mRNA-1 |
| chr4_2 | exon | 65011390 | 65011601 | 65011390 | ID=Msa0615530-mRNA-1:exon:18358;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65011390 | 65011601 | 65011390 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65011155 | 65011284 | 65011155 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65010674 | 65010758 | 65010674 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65010394 | 65010500 | 65010394 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65010202 | 65010261 | 65010202 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65009768 | 65009857 | 65009768 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65009560 | 65009667 | 65009560 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65008929 | 65009051 | 65008929 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | CDS | 65008673 | 65008804 | 65008673 | ID=Msa0615530-mRNA-1:cds;Parent=Msa0615530-mRNA-1 |
| chr4_2 | three_prime_UTR | 65008361 | 65008672 | 65008361 | ID=Msa0615530-mRNA-1:three_prime_utr;Parent=Msa0615530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
