AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0609990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609990 MtrunA17_Chr4g0042701 97.959 490 10 0 1 490 1 490 0.0 990
Msa0609990 MtrunA17_Chr3g0120751 26.797 459 291 20 37 473 43 478 3.16e-25 108
Msa0609990 MtrunA17_Chr7g0246961 29.412 323 150 13 55 311 8 318 3.68e-15 78.2
Msa0609990 MtrunA17_Chr1g0188461 30.052 193 121 6 60 244 11 197 6.08e-13 70.9
Msa0609990 MtrunA17_Chr6g0459101 24.265 408 278 15 61 446 73 471 2.49e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0609990 AT1G14030.1 64.286 462 156 3 23 483 24 477 0.0 611
Msa0609990 AT3G07670.1 29.618 314 197 13 44 346 63 363 1.20e-22 101
Msa0609990 AT4G20130.1 25.814 430 234 17 80 470 99 482 4.53e-18 87.0
Msa0609990 AT3G07670.2 31.441 229 137 10 126 346 9 225 1.00e-17 85.1
Msa0609990 AT3G55080.1 25.070 355 228 12 4 349 2 327 6.35e-17 83.6
Msa0609990 AT4G20130.3 25.779 353 195 12 139 470 57 363 4.76e-15 77.0
Msa0609990 AT4G20130.2 25.779 353 195 12 139 470 57 363 4.76e-15 77.0
Msa0609990 AT5G14260.2 25.575 391 239 15 85 445 115 483 2.76e-12 69.3
Msa0609990 AT5G14260.3 25.575 391 239 15 85 445 115 483 2.76e-12 69.3
Msa0609990 AT5G14260.1 25.575 391 239 15 85 445 115 483 2.76e-12 69.3
Msa0609990 AT3G55080.3 24.615 260 172 9 97 349 1 243 3.66e-12 68.2
Msa0609990 AT3G55080.5 24.615 260 172 9 97 349 1 243 3.66e-12 68.2
Msa0609990 AT3G55080.2 26.009 223 148 8 133 349 6 217 1.10e-11 66.6
Msa0609990 AT3G55080.4 24.664 223 146 7 133 349 6 212 2.08e-11 65.9

Find 169 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCATGGTCCCCTTTAA+AGG 0.174900 4_2:+57581812 Msa0609980:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_2:-57581592 Msa0609990:three_prime_UTR
TGCATTCAATCAACCTTTAA+AGG 0.222604 4_2:-57581825 Msa0609990:three_prime_UTR
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_2:-57582560 Msa0609990:CDS
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_2:-57581403 Msa0609990:three_prime_UTR
ACTACTAACCTTGAAGTTCT+TGG 0.282877 4_2:+57584074 None:intergenic
GATGACTTCTTCTGGGCATT+TGG 0.290567 4_2:-57583810 Msa0609990:CDS
TACATCTTTGCAAGCCTATA+TGG 0.293352 4_2:-57581539 Msa0609990:three_prime_UTR
CTCCAGCAGTTCAAACCTTC+TGG 0.294167 4_2:-57584522 Msa0609990:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_2:-57581956 Msa0609990:exon
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_2:+57582447 Msa0609980:three_prime_UTR
TAACACTGGATGACTTCTTC+TGG 0.307090 4_2:-57583818 Msa0609990:CDS
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_2:+57581139 Msa0609980:CDS
GGATTTATCCACAACCTCTT+AGG 0.337946 4_2:+57584376 None:intergenic
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4_2:-57582775 Msa0609990:CDS
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_2:+57581411 Msa0609980:three_prime_UTR
TTCCAGAAGGTTTGAACTGC+TGG 0.346946 4_2:+57584520 None:intergenic
TGACAGAAAGAGGGCTCCTT+AGG 0.349061 4_2:+57583183 Msa0609980:three_prime_UTR
CAGATGAAGAGTTGGTCCTT+TGG 0.353677 4_2:+57584600 None:intergenic
AAGAAGTCATCCAGTGTTAC+AGG 0.357815 4_2:+57583822 None:intergenic
TCAAATGCGTTCACCGTAGA+AGG 0.359804 4_2:+57581848 Msa0609980:three_prime_UTR
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_2:-57582448 Msa0609990:CDS
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_2:-57581256 Msa0609990:three_prime_UTR
TAGCTCTCATGCAGGTATTC+CGG 0.361952 4_2:+57581073 Msa0609980:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 4_2:+57581922 Msa0609980:three_prime_UTR
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_2:-57582534 Msa0609990:CDS
GCATTCAATCAACCTTTAAA+GGG 0.374835 4_2:-57581824 Msa0609990:three_prime_UTR
GAGGGCTCCTTAGGGCAAAT+AGG 0.381120 4_2:+57583192 Msa0609980:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.384455 4_2:-57583168 Msa0609990:intron
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_2:-57582066 Msa0609990:CDS
AAACTGATTCTACAATATAT+TGG 0.395083 4_2:-57584216 Msa0609990:intron
GCAACCAATCCTAAACCTTC+TGG 0.402948 4_2:+57584439 None:intergenic
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_2:+57581107 Msa0609980:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_2:+57581761 Msa0609980:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_2:-57582008 Msa0609990:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_2:-57582017 Msa0609990:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 4_2:+57582742 Msa0609980:three_prime_UTR
GCTGTTGCTGCTTCAGAGAT+AGG 0.410978 4_2:-57584349 Msa0609990:CDS
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_2:+57581760 Msa0609980:three_prime_UTR
GCTACTGATTTGACAGAGAA+AGG 0.414228 4_2:+57584571 None:intergenic
GCTCTTGCATACTTATGGTT+GGG 0.417087 4_2:-57581398 Msa0609990:three_prime_UTR
GAAGAATGAGTGTCTGAAAC+TGG 0.428450 4_2:-57583886 Msa0609990:CDS
ACTAGCTTTCACTGGTGTCT+TGG 0.428693 4_2:+57584468 None:intergenic
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_2:+57582586 Msa0609980:three_prime_UTR
TGCTCTTGCATACTTATGGT+TGG 0.435295 4_2:-57581399 Msa0609990:three_prime_UTR
TCTGAAGCAGCAACAGCATC+AGG 0.439199 4_2:+57584355 None:intergenic
GAAATATATATGTTCCATAT+AGG 0.441718 4_2:+57581525 Msa0609980:three_prime_UTR
TGTGATTCCACTTGCAGACT+TGG 0.445510 4_2:-57583739 Msa0609990:intron
CATTTGGAATTCTTAGATCA+AGG 0.449205 4_2:-57583794 Msa0609990:CDS
TGTTGTTTCTTATTAGAGAA+AGG 0.454728 4_2:-57584288 Msa0609990:CDS
GGTCAAGAGAGGATTCTGTT+TGG 0.455743 4_2:-57584267 Msa0609990:CDS
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_2:+57581101 Msa0609980:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_2:+57582414 Msa0609980:intron
TGCAGGTGCCTAAGAGGTTG+TGG 0.460079 4_2:-57584384 Msa0609990:CDS
CTTACTTGAGTAGAGTTATG+AGG 0.468781 4_2:-57581334 Msa0609990:three_prime_UTR
AACACTGGATGACTTCTTCT+GGG 0.472517 4_2:-57583817 Msa0609990:CDS
AGATATGGAAGCATCCCTTC+TGG 0.477120 4_2:+57582601 Msa0609980:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_2:+57582495 Msa0609980:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4_2:-57582782 Msa0609990:CDS
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_2:-57582521 Msa0609990:CDS
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_2:-57582148 Msa0609990:CDS
GAAGAGCTCCAAGAACTTCA+AGG 0.489004 4_2:-57584082 Msa0609990:intron
AGAATTGGAACTAGATCAGT+TGG 0.494087 4_2:-57582051 Msa0609990:CDS
GGTACCACACTAGCTTTCAC+TGG 0.496675 4_2:+57584460 None:intergenic
TCTGTTTGGAAGCATTACTT+TGG 0.496732 4_2:-57584253 Msa0609990:CDS
TGAAAATGGCTCCTTCCCTC+TGG 0.497819 4_2:+57581425 Msa0609980:three_prime_UTR
ACAACTATACTGAATTTGGT+GGG 0.497845 4_2:-57581588 Msa0609990:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 4_2:-57583199 Msa0609990:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4_2:-57582788 Msa0609990:CDS
TTATCACACAACCATTGAAC+AGG 0.500689 4_2:-57582425 Msa0609990:intron
CAGTTCAAACCTTCTGGAAG+TGG 0.501931 4_2:-57584516 Msa0609990:CDS
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_2:+57581198 Msa0609980:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_2:-57581754 Msa0609990:three_prime_UTR
AGTGTGGTACCAGAAGGTTT+AGG 0.510846 4_2:-57584448 Msa0609990:CDS
AGCCCTCTTTCTGTCAAGGC+AGG 0.511277 4_2:-57583176 Msa0609990:CDS
GACAGAAAGAGGGCTCCTTA+GGG 0.511598 4_2:+57583184 Msa0609980:three_prime_UTR
TATGCATACACCTTGACACT+GGG 0.512341 4_2:-57582727 Msa0609990:CDS
TTACTTTGGTATTCTGCCAC+AGG 0.513694 4_2:-57584239 Msa0609990:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_2:-57581589 Msa0609990:three_prime_UTR
TCATCCAGTGTTACAGGAGA+AGG 0.514726 4_2:+57583828 None:intergenic
TCTCCTGCCTTGACAGAAAG+AGG 0.515382 4_2:+57583173 Msa0609980:three_prime_UTR
AGATCTCATCAATTTGCTGC+AGG 0.518502 4_2:+57582084 Msa0609980:three_prime_UTR
CTGTTGCTGCTTCAGAGATA+GGG 0.524576 4_2:-57584348 Msa0609990:CDS
TGGGTTGTAATAATTGTGGC+CGG 0.524912 4_2:+57581780 Msa0609980:three_prime_UTR
GCATCTACAAACTCATTCCA+TGG 0.525256 4_2:-57581169 Msa0609990:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4_2:+57582607 Msa0609980:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_2:-57582497 Msa0609990:CDS
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_2:-57582582 Msa0609990:CDS
GGTTTCTTCAGATGAAGAGT+TGG 0.531719 4_2:+57584592 None:intergenic
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_2:+57581180 Msa0609980:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_2:-57581999 Msa0609990:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_2:-57582034 Msa0609990:CDS
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_2:-57581861 Msa0609990:three_prime_UTR
GTCAAATCAGTAGCTTCACT+TGG 0.539419 4_2:-57584562 Msa0609990:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_2:+57582496 Msa0609980:three_prime_UTR
AACTATACTGAATTTGGTGG+GGG 0.544382 4_2:-57581586 Msa0609990:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4_2:-57583233 Msa0609990:CDS
TTCTTGTAGCCACTTCCAGA+AGG 0.547912 4_2:+57584507 None:intergenic
ATTTGGAATTCTTAGATCAA+GGG 0.549633 4_2:-57583793 Msa0609990:CDS
CTACAAACTCATTCCATGGA+AGG 0.551044 4_2:-57581165 Msa0609990:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_2:-57582165 Msa0609990:intron
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_2:+57582519 Msa0609980:three_prime_UTR
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4_2:+57583218 Msa0609980:three_prime_UTR
GGTACCAGAAGGTTTAGGAT+TGG 0.557599 4_2:-57584443 Msa0609990:CDS
CTCTAAGAACTTATGCCAGA+GGG 0.558155 4_2:-57581440 Msa0609990:three_prime_UTR
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_2:-57582533 Msa0609990:CDS
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_2:+57581199 Msa0609980:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_2:+57581152 Msa0609980:CDS
TTGCTGCTTCAGAGATAGGG+AGG 0.563350 4_2:-57584345 Msa0609990:CDS
TGGAAGTGGCTACAAGAAGA+AGG 0.567416 4_2:-57584502 Msa0609990:CDS
TATTAGAGAAAGGTCAAGAG+AGG 0.570783 4_2:-57584278 Msa0609990:CDS
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_2:+57581285 Msa0609980:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_2:-57581587 Msa0609990:three_prime_UTR
ACAATGATTCGACGATAAGT+CGG 0.577569 4_2:-57581226 Msa0609990:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4_2:-57582616 Msa0609990:CDS
ATGATCATCTGTAGTCACTC+TGG 0.581191 4_2:+57583259 Msa0609980:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 4_2:-57583242 Msa0609990:CDS
AAGGAGCCCTCTTTCTGTCA+AGG 0.581673 4_2:-57583180 Msa0609990:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_2:-57582583 Msa0609990:CDS
GTTCATTCTCTATGTAATCA+CGG 0.584697 4_2:+57581660 Msa0609980:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 4_2:-57582728 Msa0609990:CDS
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_2:+57581246 Msa0609980:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4_2:+57582717 Msa0609980:three_prime_UTR
CTCCTGCCTTGACAGAAAGA+GGG 0.588693 4_2:+57583174 Msa0609980:three_prime_UTR
TACAAACTCATTCCATGGAA+GGG 0.592326 4_2:-57581164 Msa0609990:three_prime_UTR
GTTATTCCAGTGCAGGTCAG+AGG 0.594794 4_2:-57584104 Msa0609990:intron
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_2:-57581281 Msa0609990:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_2:-57581286 Msa0609990:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_2:-57582118 Msa0609990:CDS
CATTCAATCAACCTTTAAAG+GGG 0.599650 4_2:-57581823 Msa0609990:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_2:-57582670 Msa0609990:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_2:-57582131 Msa0609990:CDS
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_2:-57581297 Msa0609990:three_prime_UTR
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_2:-57581285 Msa0609990:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_2:-57582031 Msa0609990:CDS
GTTCTTACCAAGTCTGCAAG+TGG 0.608009 4_2:+57583732 None:intergenic
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_2:-57582119 Msa0609990:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_2:+57581286 Msa0609980:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_2:-57582024 Msa0609990:CDS
AAAGCTAGTGTGGTACCAGA+AGG 0.610016 4_2:-57584454 Msa0609990:CDS
TGCTGCTTCAGAGATAGGGA+GGG 0.612119 4_2:-57584344 Msa0609990:CDS
GGGTTGTAATAATTGTGGCC+GGG 0.612240 4_2:+57581781 Msa0609980:three_prime_UTR
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_2:+57581310 Msa0609980:CDS
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_2:+57581243 Msa0609980:CDS
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_2:-57581908 Msa0609990:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_2:-57581987 Msa0609990:CDS
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_2:+57582435 Msa0609980:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_2:+57582434 Msa0609980:three_prime_UTR
TCTCTAAGAACTTATGCCAG+AGG 0.629837 4_2:-57581441 Msa0609990:three_prime_UTR
AAGAACTTATGCCAGAGGGA+AGG 0.630908 4_2:-57581436 Msa0609990:three_prime_UTR
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_2:-57582117 Msa0609990:CDS
AATCATTGTAGACAAACCAA+AGG 0.637419 4_2:+57581240 Msa0609980:CDS
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4_2:+57582608 Msa0609980:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_2:+57582488 Msa0609980:three_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 4_2:+57583267 Msa0609980:three_prime_UTR
ATTGTAGAATCAGTTTCCTG+TGG 0.648786 4_2:+57584223 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 4_2:+57581776 Msa0609980:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4_2:-57582615 Msa0609990:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_2:+57582555 Msa0609980:three_prime_UTR
GACACCAGTGAAAGCTAGTG+TGG 0.671601 4_2:-57584464 Msa0609990:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_2:-57582581 Msa0609990:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_2:-57582532 Msa0609990:CDS
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_2:+57582438 Msa0609980:three_prime_UTR
ATGCATACACCTTGACACTG+GGG 0.698561 4_2:-57582726 Msa0609990:CDS
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4_2:+57582611 Msa0609980:three_prime_UTR
AACAACATAACAGACAACCA+TGG 0.720499 4_2:+57584304 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_2:-57582580 Msa0609990:CDS
TGTGTAGTAAGTTGACACCA+TGG 0.752669 4_2:-57584321 Msa0609990:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_2:-57582479 Msa0609990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCAATATTTGAAAACAT+GGG + chr4_2:57581811-57581830 Msa0609980:three_prime_UTR 15.0%
!! ATAATCAATATTTGAAAACA+TGG + chr4_2:57581812-57581831 Msa0609980:three_prime_UTR 15.0%
!! AAGAAAAATAGAAAAGAAAA+AGG + chr4_2:57584337-57584356 None:intergenic 15.0%
!!! AAACTGATTCTACAATATAT+TGG - chr4_2:57581621-57581640 Msa0609990:three_prime_UTR 20.0%
!!! TCATTTTCATTTTTTGTTGA+AGG + chr4_2:57582518-57582537 Msa0609980:three_prime_UTR 20.0%
!! ACATTTCCAAATTCAATTTA+TGG - chr4_2:57582537-57582556 Msa0609990:CDS 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG + chr4_2:57583040-57583059 Msa0609980:intron 20.0%
!! TGTAATGAAATATATAGACA+CGG + chr4_2:57583518-57583537 None:intergenic 20.0%
!! TTATACAACTATACTGAATT+TGG - chr4_2:57584245-57584264 Msa0609990:CDS 20.0%
!! GAAATATATATGTTCCATAT+AGG + chr4_2:57584315-57584334 None:intergenic 20.0%
!!! TTTTGTATACATGATTTTGT+AGG + chr4_2:57584375-57584394 None:intergenic 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG + chr4_2:57584744-57584763 None:intergenic 20.0%
!!! AAAGATTGTAGCCATTTTTT+TGG + chr4_2:57581156-57581175 Msa0609980:CDS 25.0%
!!! TAGAAATGATGTTATTTTGC+AGG - chr4_2:57581436-57581455 Msa0609990:three_prime_UTR 25.0%
!!! TGTTGTTTCTTATTAGAGAA+AGG - chr4_2:57581549-57581568 Msa0609990:three_prime_UTR 25.0%
! TGATTCTACAATATATTGGT+GGG - chr4_2:57581625-57581644 Msa0609990:three_prime_UTR 25.0%
!! GAAATTGAGTTCTTTTCATA+TGG - chr4_2:57581687-57581706 Msa0609990:three_prime_UTR 25.0%
!! ATTTGGAATTCTTAGATCAA+GGG - chr4_2:57582044-57582063 Msa0609990:CDS 25.0%
!! TCAACATCTATTAGTTTACA+AGG - chr4_2:57582375-57582394 Msa0609990:intron 25.0%
!! TTTTGTTGAAGGATATTGAT+GGG + chr4_2:57582507-57582526 Msa0609980:three_prime_UTR 25.0%
!! TTTTTGTTGAAGGATATTGA+TGG + chr4_2:57582508-57582527 Msa0609980:three_prime_UTR 25.0%
! TCTGATCCATAAATTGAATT+TGG + chr4_2:57582546-57582565 Msa0609980:three_prime_UTR 25.0%
! ATGAAAAGAAACATATGAAG+GGG + chr4_2:57582708-57582727 Msa0609980:three_prime_UTR 25.0%
! CATGAAAAGAAACATATGAA+GGG + chr4_2:57582709-57582728 Msa0609980:three_prime_UTR 25.0%
! ATAGTTTATTACCTGTTCAA+TGG + chr4_2:57583426-57583445 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG - chr4_2:57583432-57583451 Msa0609990:intron 25.0%
! GGTAATAAACTATACATTCA+GGG - chr4_2:57583433-57583452 Msa0609990:intron 25.0%
! AGTTGGAATATTATCAAGAA+AGG - chr4_2:57583803-57583822 Msa0609990:CDS 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG + chr4_2:57583879-57583898 None:intergenic 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG - chr4_2:57584745-57584764 Msa0609990:five_prime_UTR 25.0%
CAAAACCAGAACCAAAAAAA+TGG - chr4_2:57581142-57581161 Msa0609990:three_prime_UTR 30.0%
! AAAATGGCTACAATCTTTTC+TGG - chr4_2:57581158-57581177 Msa0609990:three_prime_UTR 30.0%
! TTCTCTTTTCACACAAACAA+GGG - chr4_2:57581197-57581216 Msa0609990:three_prime_UTR 30.0%
! AAATCATCTTTTGCAACCAA+AGG - chr4_2:57581221-57581240 Msa0609990:three_prime_UTR 30.0%
CTGATTCTACAATATATTGG+TGG - chr4_2:57581624-57581643 Msa0609990:three_prime_UTR 30.0%
! TTGAGTTCTTTTCATATGGT+TGG - chr4_2:57581691-57581710 Msa0609990:three_prime_UTR 30.0%
AATTCAGTTCTTCAAAGTTC+AGG + chr4_2:57581882-57581901 Msa0609980:three_prime_UTR 30.0%
TTTGAAGAACTGAATTGAGT+AGG - chr4_2:57581886-57581905 Msa0609990:three_prime_UTR 30.0%
GAAGGAAAAAGCTTCTTATT+AGG + chr4_2:57581994-57582013 Msa0609980:three_prime_UTR 30.0%
! CATTTGGAATTCTTAGATCA+AGG - chr4_2:57582043-57582062 Msa0609990:CDS 30.0%
ACAGAAGAAGAGAAATGAAA+AGG + chr4_2:57582130-57582149 Msa0609980:three_prime_UTR 30.0%
! TTTCCTCTATTCGTTCTAAA+GGG + chr4_2:57582184-57582203 Msa0609980:intron 30.0%
ATTTCCTCTATTCGTTCTAA+AGG + chr4_2:57582185-57582204 Msa0609980:intron 30.0%
CTTAAGAACATTAACTGATC+TGG + chr4_2:57582266-57582285 Msa0609980:intron 30.0%
GAGAGTTTCTCAATTAAAAC+CGG + chr4_2:57582429-57582448 Msa0609980:three_prime_UTR 30.0%
TTAATTGAGAAACTCTCCAA+AGG - chr4_2:57582432-57582451 Msa0609990:CDS 30.0%
!! TTTGGATTAGTTTCTACCTT+TGG + chr4_2:57582451-57582470 Msa0609980:three_prime_UTR 30.0%
CACAAAAACAAGACTCAATT+TGG + chr4_2:57582469-57582488 Msa0609980:three_prime_UTR 30.0%
GCATGAAAAGAAACATATGA+AGG + chr4_2:57582710-57582729 Msa0609980:three_prime_UTR 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG + chr4_2:57582849-57582868 Msa0609980:three_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG - chr4_2:57582967-57582986 Msa0609990:intron 30.0%
CTACTTTGTCGTCAAAAAAA+GGG + chr4_2:57583151-57583170 Msa0609980:intron 30.0%
TCTACTTTGTCGTCAAAAAA+AGG + chr4_2:57583152-57583171 Msa0609980:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG + chr4_2:57583285-57583304 None:intergenic 30.0%
TATTCTCATTACCATCATGT+TGG + chr4_2:57583461-57583480 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG - chr4_2:57583583-57583602 Msa0609990:intron 30.0%
! TTGCATTTTACGTAGTACAT+GGG - chr4_2:57583584-57583603 Msa0609990:intron 30.0%
TGGAATATTATCAAGAAAGG+AGG - chr4_2:57583806-57583825 Msa0609990:CDS 30.0%
CAAAATACTTCTAATCTTGC+AGG - chr4_2:57583881-57583900 Msa0609990:CDS 30.0%
AACAACAGTATGTCATTAAC+TGG + chr4_2:57583918-57583937 None:intergenic 30.0%
TGCATTCAATCAACCTTTAA+AGG - chr4_2:57584012-57584031 Msa0609990:intron 30.0%
GCATTCAATCAACCTTTAAA+GGG - chr4_2:57584013-57584032 Msa0609990:intron 30.0%
! CATTCAATCAACCTTTAAAG+GGG - chr4_2:57584014-57584033 Msa0609990:intron 30.0%
!! GTAATGGGTTGTAATAATTG+TGG + chr4_2:57584064-57584083 None:intergenic 30.0%
GTTCATTCTCTATGTAATCA+CGG + chr4_2:57584180-57584199 None:intergenic 30.0%
TACAACTATACTGAATTTGG+TGG - chr4_2:57584248-57584267 Msa0609990:CDS 30.0%
ACAACTATACTGAATTTGGT+GGG - chr4_2:57584249-57584268 Msa0609990:CDS 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG - chr4_2:57584346-57584365 Msa0609990:CDS 30.0%
! ATGATTTTGTAGGAAACCAT+GGG + chr4_2:57584365-57584384 None:intergenic 30.0%
AATCATTGTAGACAAACCAA+AGG + chr4_2:57584600-57584619 None:intergenic 30.0%
TTGCTTGATATGCATCAAAA+TGG + chr4_2:57584701-57584720 None:intergenic 30.0%
!!! TGTAGCCATTTTTTTGGTTC+TGG + chr4_2:57581150-57581169 Msa0609980:CDS 35.0%
! CTTCTCTTTTCACACAAACA+AGG - chr4_2:57581196-57581215 Msa0609990:three_prime_UTR 35.0%
AACAACATAACAGACAACCA+TGG + chr4_2:57581536-57581555 Msa0609980:three_prime_UTR 35.0%
TATTAGAGAAAGGTCAAGAG+AGG - chr4_2:57581559-57581578 Msa0609990:three_prime_UTR 35.0%
!! TCTGTTTGGAAGCATTACTT+TGG - chr4_2:57581584-57581603 Msa0609990:three_prime_UTR 35.0%
ATTGTAGAATCAGTTTCCTG+TGG + chr4_2:57581617-57581636 Msa0609980:three_prime_UTR 35.0%
!!! ATTGGTGGGTTTCTTTTGTT+TGG - chr4_2:57581639-57581658 Msa0609990:three_prime_UTR 35.0%
! ATATGGTTGGTTGATTCAGT+TGG - chr4_2:57581704-57581723 Msa0609990:three_prime_UTR 35.0%
!! TGGTTGATTCAGTTGGTAAT+TGG - chr4_2:57581711-57581730 Msa0609990:three_prime_UTR 35.0%
ACTACTAACCTTGAAGTTCT+TGG + chr4_2:57581766-57581785 Msa0609980:three_prime_UTR 35.0%
! CAACTAGATTTTCATTGCGA+AGG + chr4_2:57582080-57582099 Msa0609980:three_prime_UTR 35.0%
TAAAGGGGCTGTAAACAATA+GGG + chr4_2:57582168-57582187 Msa0609980:intron 35.0%
!! TTCCTCTATTCGTTCTAAAG+GGG + chr4_2:57582183-57582202 Msa0609980:intron 35.0%
! TCTAAAATTATGTCCACGCT+AGG + chr4_2:57582242-57582261 Msa0609980:intron 35.0%
! AGGACTTCTTTTGTATGTGA+AGG - chr4_2:57582395-57582414 Msa0609990:intron 35.0%
! GGACTTCTTTTGTATGTGAA+GGG - chr4_2:57582396-57582415 Msa0609990:intron 35.0%
GATCATGCTTATGAAGTCAA+AGG - chr4_2:57582595-57582614 Msa0609990:CDS 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG - chr4_2:57583007-57583026 Msa0609990:intron 35.0%
AAACAAAAGCAATGCAGAGT+TGG - chr4_2:57583049-57583068 Msa0609990:intron 35.0%
TATGCATATCGATCTGCATT+TGG + chr4_2:57583098-57583117 Msa0609980:intron 35.0%
! AGTGCTACTAATCTCAGATA+TGG + chr4_2:57583254-57583273 Msa0609980:three_prime_UTR 35.0%
! TATCTGAGATTAGTAGCACT+AGG - chr4_2:57583254-57583273 Msa0609990:CDS 35.0%
! ATCTGAGATTAGTAGCACTA+GGG - chr4_2:57583255-57583274 Msa0609990:CDS 35.0%
ATACTAGCTCCTCATTATCA+CGG + chr4_2:57583352-57583371 None:intergenic 35.0%
TTATCACACAACCATTGAAC+AGG - chr4_2:57583412-57583431 Msa0609990:intron 35.0%
GTACTACGTAAAATGCAATG+AGG + chr4_2:57583582-57583601 None:intergenic 35.0%
GAACAAAGCATACAAATTGC+AGG - chr4_2:57583654-57583673 Msa0609990:intron 35.0%
AAGAGGCAAATCTAGATTCA+AGG - chr4_2:57583689-57583708 Msa0609990:intron 35.0%
AGAATTGGAACTAGATCAGT+TGG - chr4_2:57583786-57583805 Msa0609990:CDS 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG - chr4_2:57583929-57583948 Msa0609990:CDS 35.0%
GGATGAAAAAACTGAACACT+TGG - chr4_2:57583950-57583969 Msa0609990:intron 35.0%
! CAACTATACTGAATTTGGTG+GGG - chr4_2:57584250-57584269 Msa0609990:CDS 35.0%
! AACTATACTGAATTTGGTGG+GGG - chr4_2:57584251-57584270 Msa0609990:CDS 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG - chr4_2:57584262-57584281 Msa0609990:CDS 35.0%
TTTGGTGGGGGAAAAAATAA+GGG - chr4_2:57584263-57584282 Msa0609990:CDS 35.0%
TACATCTTTGCAAGCCTATA+TGG - chr4_2:57584298-57584317 Msa0609990:CDS 35.0%
! TGATTTTGTAGGAAACCATG+GGG + chr4_2:57584364-57584383 None:intergenic 35.0%
! CATGATTTTGTAGGAAACCA+TGG + chr4_2:57584366-57584385 None:intergenic 35.0%
ATGCAAGAGCAATCTGAAAA+TGG + chr4_2:57584429-57584448 None:intergenic 35.0%
AGATTGCTCTTGCATACTTA+TGG - chr4_2:57584434-57584453 Msa0609990:CDS 35.0%
CTTACTTGAGTAGAGTTATG+AGG - chr4_2:57584503-57584522 Msa0609990:CDS 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG + chr4_2:57584530-57584549 None:intergenic 35.0%
TAGAAATAATCCTCCTCCTT+TGG - chr4_2:57584581-57584600 Msa0609990:CDS 35.0%
ACAATGATTCGACGATAAGT+CGG - chr4_2:57584611-57584630 Msa0609990:CDS 35.0%
TACAAACTCATTCCATGGAA+GGG - chr4_2:57584673-57584692 Msa0609990:CDS 35.0%
AAAAGTCCATCTTATTGGAC+CGG + chr4_2:57584739-57584758 None:intergenic 35.0%
! ATGGCTACAATCTTTTCTGG+AGG - chr4_2:57581161-57581180 Msa0609990:three_prime_UTR 40.0%
GGTTTCTTCAGATGAAGAGT+TGG + chr4_2:57581248-57581267 Msa0609980:CDS 40.0%
!! GCTACTGATTTGACAGAGAA+AGG + chr4_2:57581269-57581288 Msa0609980:CDS 40.0%
GTCAAATCAGTAGCTTCACT+TGG - chr4_2:57581275-57581294 Msa0609990:three_prime_UTR 40.0%
!! TTATTTTGCAGGTGCCTAAG+AGG - chr4_2:57581447-57581466 Msa0609990:three_prime_UTR 40.0%
GGATTTATCCACAACCTCTT+AGG + chr4_2:57581464-57581483 Msa0609980:three_prime_UTR 40.0%
! TGTGTAGTAAGTTGACACCA+TGG - chr4_2:57581516-57581535 Msa0609990:three_prime_UTR 40.0%
TTACTTTGGTATTCTGCCAC+AGG - chr4_2:57581598-57581617 Msa0609990:three_prime_UTR 40.0%
GTAATTGGTTATTCCAGTGC+AGG - chr4_2:57581726-57581745 Msa0609990:three_prime_UTR 40.0%
! GAAGAATGAGTGTCTGAAAC+TGG - chr4_2:57581951-57581970 Msa0609990:exon 40.0%
! TTTTCCTTCTCCTGTAACAC+TGG - chr4_2:57582005-57582024 Msa0609990:CDS 40.0%
AAGAAGTCATCCAGTGTTAC+AGG + chr4_2:57582018-57582037 Msa0609980:three_prime_UTR 40.0%
TAACACTGGATGACTTCTTC+TGG - chr4_2:57582019-57582038 Msa0609990:CDS 40.0%
AACACTGGATGACTTCTTCT+GGG - chr4_2:57582020-57582039 Msa0609990:CDS 40.0%
CTAAAGGGGCTGTAAACAAT+AGG + chr4_2:57582169-57582188 Msa0609980:intron 40.0%
TGTCTATGATATTCCTAGCG+TGG - chr4_2:57582226-57582245 Msa0609990:intron 40.0%
ATGATCATCTGTAGTCACTC+TGG + chr4_2:57582581-57582600 Msa0609980:three_prime_UTR 40.0%
AATATATCCATGTCCATCCG+AGG - chr4_2:57582760-57582779 Msa0609990:CDS 40.0%
ATATATCCATGTCCATCCGA+GGG - chr4_2:57582761-57582780 Msa0609990:CDS 40.0%
TTTCCTTGATATGGAAGAGC+TGG + chr4_2:57582840-57582859 Msa0609980:three_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG + chr4_2:57582883-57582902 Msa0609980:three_prime_UTR 40.0%
AAAGTTCTGCTGCAACTTTC+TGG + chr4_2:57582898-57582917 Msa0609980:three_prime_UTR 40.0%
! GCAATCCAAGCTGTATTTTG+AGG - chr4_2:57582918-57582937 Msa0609990:intron 40.0%
CACATTCATAACTGTGCAGT+TGG - chr4_2:57582991-57583010 Msa0609990:intron 40.0%
ATATGCATACACCTTGACAC+TGG - chr4_2:57583109-57583128 Msa0609990:intron 40.0%
TATGCATACACCTTGACACT+GGG - chr4_2:57583110-57583129 Msa0609990:intron 40.0%
GTCAAAAAAAGGGTCTGACT+CGG + chr4_2:57583141-57583160 Msa0609980:intron 40.0%
TGCTGTCTGAGAAAAACCAT+TGG + chr4_2:57583186-57583205 Msa0609980:three_prime_UTR 40.0%
! TCTGAGATTAGTAGCACTAG+GGG - chr4_2:57583256-57583275 Msa0609990:CDS 40.0%
ATAGCAGTCGGAATAAGAGA+AGG - chr4_2:57583718-57583737 Msa0609990:intron 40.0%
TAGCAGTCGGAATAAGAGAA+GGG - chr4_2:57583719-57583738 Msa0609990:intron 40.0%
!! AGATCTCATCAATTTGCTGC+AGG + chr4_2:57583756-57583775 None:intergenic 40.0%
GATCTTCGAGCAGAAAGAAT+TGG - chr4_2:57583771-57583790 Msa0609990:CDS 40.0%
TTATCAAGAAAGGAGGCTCA+AGG - chr4_2:57583813-57583832 Msa0609990:CDS 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG + chr4_2:57583870-57583889 None:intergenic 40.0%
ATCGCAAATGTAGCCTTCTA+CGG - chr4_2:57583976-57583995 Msa0609990:intron 40.0%
TTGATCATGGTCCCCTTTAA+AGG + chr4_2:57584028-57584047 None:intergenic 40.0%
! CCATGATCAAGTTTTTGACC+CGG - chr4_2:57584038-57584057 Msa0609990:intron 40.0%
TGGGTTGTAATAATTGTGGC+CGG + chr4_2:57584060-57584079 None:intergenic 40.0%
! TTTTCCACTTTACAAGCTGC+AGG + chr4_2:57584090-57584109 None:intergenic 40.0%
! TCTCTAAGAACTTATGCCAG+AGG - chr4_2:57584396-57584415 Msa0609990:CDS 40.0%
! CTCTAAGAACTTATGCCAGA+GGG - chr4_2:57584397-57584416 Msa0609990:CDS 40.0%
TGCTCTTGCATACTTATGGT+TGG - chr4_2:57584438-57584457 Msa0609990:CDS 40.0%
GCTCTTGCATACTTATGGTT+GGG - chr4_2:57584439-57584458 Msa0609990:CDS 40.0%
CATTGTAGACAAACCAAAGG+AGG + chr4_2:57584597-57584616 None:intergenic 40.0%
CAGGTTCACGAAAAGAGAAT+GGG + chr4_2:57584641-57584660 None:intergenic 40.0%
ACAGGTTCACGAAAAGAGAA+TGG + chr4_2:57584642-57584661 None:intergenic 40.0%
GCATCTACAAACTCATTCCA+TGG - chr4_2:57584668-57584687 Msa0609990:CDS 40.0%
CTACAAACTCATTCCATGGA+AGG - chr4_2:57584672-57584691 Msa0609990:CDS 40.0%
ATCAAAATGGAACCCTTCCA+TGG + chr4_2:57584688-57584707 None:intergenic 40.0%
! GCAATTGTACAAGCCTTTTC+CGG - chr4_2:57584717-57584736 Msa0609990:five_prime_UTR 40.0%
! CAGATGAAGAGTTGGTCCTT+TGG + chr4_2:57581240-57581259 Msa0609980:CDS 45.0%
TTCCAGAAGGTTTGAACTGC+TGG + chr4_2:57581320-57581339 Msa0609980:CDS 45.0%
! CAGTTCAAACCTTCTGGAAG+TGG - chr4_2:57581321-57581340 Msa0609990:three_prime_UTR 45.0%
TTCTTGTAGCCACTTCCAGA+AGG + chr4_2:57581333-57581352 Msa0609980:CDS 45.0%
TGGAAGTGGCTACAAGAAGA+AGG - chr4_2:57581335-57581354 Msa0609990:three_prime_UTR 45.0%
!! ACTAGCTTTCACTGGTGTCT+TGG + chr4_2:57581372-57581391 Msa0609980:three_prime_UTR 45.0%
AAAGCTAGTGTGGTACCAGA+AGG - chr4_2:57581383-57581402 Msa0609990:three_prime_UTR 45.0%
AGTGTGGTACCAGAAGGTTT+AGG - chr4_2:57581389-57581408 Msa0609990:three_prime_UTR 45.0%
! GGTACCAGAAGGTTTAGGAT+TGG - chr4_2:57581394-57581413 Msa0609990:three_prime_UTR 45.0%
GCAACCAATCCTAAACCTTC+TGG + chr4_2:57581401-57581420 Msa0609980:three_prime_UTR 45.0%
! CTGTTGCTGCTTCAGAGATA+GGG - chr4_2:57581489-57581508 Msa0609990:three_prime_UTR 45.0%
GGTCAAGAGAGGATTCTGTT+TGG - chr4_2:57581570-57581589 Msa0609990:three_prime_UTR 45.0%
GAAGAGCTCCAAGAACTTCA+AGG - chr4_2:57581755-57581774 Msa0609990:three_prime_UTR 45.0%
TCATCCAGTGTTACAGGAGA+AGG + chr4_2:57582012-57582031 Msa0609980:three_prime_UTR 45.0%
GATGACTTCTTCTGGGCATT+TGG - chr4_2:57582027-57582046 Msa0609990:CDS 45.0%
TGTGATTCCACTTGCAGACT+TGG - chr4_2:57582098-57582117 Msa0609990:CDS 45.0%
GTTCTTACCAAGTCTGCAAG+TGG + chr4_2:57582108-57582127 Msa0609980:three_prime_UTR 45.0%
!! AGCCCCTTTAGAACGAATAG+AGG - chr4_2:57582178-57582197 Msa0609990:intron 45.0%
GTATGTGAAGGGTCGTAAAC+CGG - chr4_2:57582407-57582426 Msa0609990:intron 45.0%
TATGAAGTCAAAGGACCAGC+TGG - chr4_2:57582604-57582623 Msa0609990:CDS 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG - chr4_2:57582618-57582637 Msa0609990:CDS 45.0%
GGGATTACCTATTTGCCCTA+AGG - chr4_2:57582638-57582657 Msa0609990:CDS 45.0%
TATATCCATGTCCATCCGAG+GGG - chr4_2:57582762-57582781 Msa0609990:CDS 45.0%
TAGCCAGCTCTTCCATATCA+AGG - chr4_2:57582834-57582853 Msa0609990:intron 45.0%
TTGCGCCTCAAAATACAGCT+TGG + chr4_2:57582926-57582945 Msa0609980:three_prime_UTR 45.0%
ATGCATACACCTTGACACTG+GGG - chr4_2:57583111-57583130 Msa0609990:intron 45.0%
!! AGATATGGAAGCATCCCTTC+TGG + chr4_2:57583239-57583258 Msa0609980:three_prime_UTR 45.0%
CTGAGATTAGTAGCACTAGG+GGG - chr4_2:57583257-57583276 Msa0609990:CDS 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG - chr4_2:57583277-57583296 Msa0609990:intron 45.0%
ACTGTTCAGAGACTCCATCT+GGG - chr4_2:57583304-57583323 Msa0609990:intron 45.0%
TCCTCATTATCACGGCTCAT+GGG + chr4_2:57583344-57583363 None:intergenic 45.0%
TGAGGAGCTAGTATGCAAAG+CGG - chr4_2:57583358-57583377 Msa0609990:intron 45.0%
GGTTGTGTGATAACCAGCAA+GGG + chr4_2:57583405-57583424 None:intergenic 45.0%
TGGTTGTGTGATAACCAGCA+AGG + chr4_2:57583406-57583425 None:intergenic 45.0%
CATTCAGGGTTCCAACATGA+TGG - chr4_2:57583447-57583466 Msa0609990:intron 45.0%
TCAAGGCTTGCAATAGCAGT+CGG - chr4_2:57583706-57583725 Msa0609990:intron 45.0%
AGCAGTCGGAATAAGAGAAG+GGG - chr4_2:57583720-57583739 Msa0609990:intron 45.0%
CTCAAGGATCTTGGACTTTG+CGG - chr4_2:57583829-57583848 Msa0609990:CDS 45.0%
TCAAATGCGTTCACCGTAGA+AGG + chr4_2:57583992-57584011 None:intergenic 45.0%
CCGGGTCAAAAACTTGATCA+TGG + chr4_2:57584041-57584060 None:intergenic 45.0%
GGGTTGTAATAATTGTGGCC+GGG + chr4_2:57584059-57584078 None:intergenic 45.0%
ACAAGCTGCAGGCATGTAAT+GGG + chr4_2:57584079-57584098 None:intergenic 45.0%
TACAAGCTGCAGGCATGTAA+TGG + chr4_2:57584080-57584099 None:intergenic 45.0%
AAGAACTTATGCCAGAGGGA+AGG - chr4_2:57584401-57584420 Msa0609990:CDS 45.0%
CACACTTTGTTCCCTCACAA+AGG - chr4_2:57584540-57584559 Msa0609990:CDS 45.0%
TGTAGACAAACCAAAGGAGG+AGG + chr4_2:57584594-57584613 None:intergenic 45.0%
CCATCTTATTGGACCGGAAA+AGG + chr4_2:57584733-57584752 None:intergenic 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG - chr4_2:57584730-57584749 Msa0609990:five_prime_UTR 45.0%
CTCCAGCAGTTCAAACCTTC+TGG - chr4_2:57581315-57581334 Msa0609990:three_prime_UTR 50.0%
GACACCAGTGAAAGCTAGTG+TGG - chr4_2:57581373-57581392 Msa0609990:three_prime_UTR 50.0%
!! GGTACCACACTAGCTTTCAC+TGG + chr4_2:57581380-57581399 Msa0609980:three_prime_UTR 50.0%
! TCTGAAGCAGCAACAGCATC+AGG + chr4_2:57581485-57581504 Msa0609980:three_prime_UTR 50.0%
! GCTGTTGCTGCTTCAGAGAT+AGG - chr4_2:57581488-57581507 Msa0609990:three_prime_UTR 50.0%
! TTGCTGCTTCAGAGATAGGG+AGG - chr4_2:57581492-57581511 Msa0609990:three_prime_UTR 50.0%
! TGCTGCTTCAGAGATAGGGA+GGG - chr4_2:57581493-57581512 Msa0609990:three_prime_UTR 50.0%
GTTATTCCAGTGCAGGTCAG+AGG - chr4_2:57581733-57581752 Msa0609990:three_prime_UTR 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG - chr4_2:57582617-57582636 Msa0609990:CDS 50.0%
TCCCAAGAGAAAAGACCAGC+TGG + chr4_2:57582622-57582641 Msa0609980:three_prime_UTR 50.0%
GACAGAAAGAGGGCTCCTTA+GGG + chr4_2:57582656-57582675 Msa0609980:three_prime_UTR 50.0%
TGACAGAAAGAGGGCTCCTT+AGG + chr4_2:57582657-57582676 Msa0609980:three_prime_UTR 50.0%
AAGGAGCCCTCTTTCTGTCA+AGG - chr4_2:57582657-57582676 Msa0609990:CDS 50.0%
CTCCTGCCTTGACAGAAAGA+GGG + chr4_2:57582666-57582685 Msa0609980:three_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+AGG + chr4_2:57582667-57582686 Msa0609980:three_prime_UTR 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG - chr4_2:57582669-57582688 Msa0609990:CDS 50.0%
AAAAACCCCTCGGATGGACA+TGG + chr4_2:57582770-57582789 Msa0609980:three_prime_UTR 50.0%
! TCCATCCGAGGGGTTTTTGA+CGG - chr4_2:57582772-57582791 Msa0609990:CDS 50.0%
TCCTACCGTCAAAAACCCCT+CGG + chr4_2:57582780-57582799 Msa0609980:three_prime_UTR 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG - chr4_2:57583055-57583074 Msa0609990:intron 50.0%
GTAGACGTTGCTGAGACCAA+TGG - chr4_2:57583167-57583186 Msa0609990:intron 50.0%
TATAACCGCCCTCTTCCAGA+AGG - chr4_2:57583221-57583240 Msa0609990:CDS 50.0%
ATAACCGCCCTCTTCCAGAA+GGG - chr4_2:57583222-57583241 Msa0609990:CDS 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG + chr4_2:57583232-57583251 Msa0609980:three_prime_UTR 50.0%
CACTGTTCAGAGACTCCATC+TGG - chr4_2:57583303-57583322 Msa0609990:intron 50.0%
CTGTTCAGAGACTCCATCTG+GGG - chr4_2:57583305-57583324 Msa0609990:intron 50.0%
CTCCTCATTATCACGGCTCA+TGG + chr4_2:57583345-57583364 None:intergenic 50.0%
TGTGTGATAACCAGCAAGGG+CGG + chr4_2:57583402-57583421 None:intergenic 50.0%
GAAAGGAGGCTCAAGGATCT+TGG - chr4_2:57583820-57583839 Msa0609990:CDS 50.0%
CTTGGACTTTGCGGTGAAAG+TGG - chr4_2:57583838-57583857 Msa0609990:CDS 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG - chr4_2:57583850-57583869 Msa0609990:CDS 50.0%
CATGCCTGCAGCTTGTAAAG+TGG - chr4_2:57584083-57584102 Msa0609990:CDS 50.0%
TGAAAATGGCTCCTTCCCTC+TGG + chr4_2:57584415-57584434 None:intergenic 50.0%
CCTCATGAGTGCCTTTGTGA+GGG + chr4_2:57584554-57584573 None:intergenic 50.0%
!! CCTCACAAAGGCACTCATGA+GGG - chr4_2:57584552-57584571 Msa0609990:CDS 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG - chr4_2:57584556-57584575 Msa0609990:CDS 50.0%
GTTTGTAGATGCTGTGCGAC+AGG + chr4_2:57584660-57584679 None:intergenic 50.0%
TGCAGGTGCCTAAGAGGTTG+TGG - chr4_2:57581453-57581472 Msa0609990:three_prime_UTR 55.0%
CTGTAGTCACTCTGGCACTG+TGG + chr4_2:57582573-57582592 Msa0609980:three_prime_UTR 55.0%
GAGGGCTCCTTAGGGCAAAT+AGG + chr4_2:57582648-57582667 Msa0609980:three_prime_UTR 55.0%
AGCCCTCTTTCTGTCAAGGC+AGG - chr4_2:57582661-57582680 Msa0609990:CDS 55.0%
ACCGTCAAAAACCCCTCGGA+TGG + chr4_2:57582776-57582795 Msa0609980:three_prime_UTR 55.0%
! TCCGAGGGGTTTTTGACGGT+AGG - chr4_2:57582776-57582795 Msa0609990:CDS 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG - chr4_2:57583062-57583081 Msa0609990:intron 55.0%
CTCGGATATCCCCAGTGTCA+AGG + chr4_2:57583123-57583142 Msa0609980:intron 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG + chr4_2:57583233-57583252 Msa0609980:three_prime_UTR 55.0%
! CTCCATCTGGGGTCATCTTG+AGG - chr4_2:57583316-57583335 Msa0609990:intron 55.0%
CACCTCAAGATGACCCCAGA+TGG + chr4_2:57583321-57583340 None:intergenic 55.0%
! GCCCATGAGCCGTGATAATG+AGG - chr4_2:57583340-57583359 Msa0609990:intron 55.0%
GCAGGATCGCAAGCTGAAAG+AGG - chr4_2:57583672-57583691 Msa0609990:intron 55.0%
!! CCCTCACAAAGGCACTCATG+AGG - chr4_2:57584551-57584570 Msa0609990:CDS 55.0%
CCCTCATGAGTGCCTTTGTG+AGG + chr4_2:57584555-57584574 None:intergenic 55.0%
GCTCTTCCTCTGACCTGCAC+TGG + chr4_2:57581742-57581761 Msa0609980:three_prime_UTR 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG + chr4_2:57583229-57583248 Msa0609980:three_prime_UTR 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG + chr4_2:57583393-57583412 None:intergenic 60.0%
GCCTGCAAATCCGCCCTTGC+TGG - chr4_2:57583389-57583408 Msa0609990:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 57581083 57584776 57581083 ID=Msa0609990;Name=Msa0609990
chr4_2 mRNA 57581083 57584776 57581083 ID=Msa0609990-mRNA-1;Parent=Msa0609990;Name=Msa0609990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=78|1|1|1|1|1|6|882|490
chr4_2 exon 57581083 57582183 57581083 ID=Msa0609990-mRNA-1:exon:14964;Parent=Msa0609990-mRNA-1
chr4_2 exon 57582426 57582830 57582426 ID=Msa0609990-mRNA-1:exon:14963;Parent=Msa0609990-mRNA-1
chr4_2 exon 57583169 57583294 57583169 ID=Msa0609990-mRNA-1:exon:14962;Parent=Msa0609990-mRNA-1
chr4_2 exon 57583740 57583951 57583740 ID=Msa0609990-mRNA-1:exon:14961;Parent=Msa0609990-mRNA-1
chr4_2 exon 57584083 57584111 57584083 ID=Msa0609990-mRNA-1:exon:14960;Parent=Msa0609990-mRNA-1
chr4_2 exon 57584217 57584776 57584217 ID=Msa0609990-mRNA-1:exon:14959;Parent=Msa0609990-mRNA-1
chr4_2 five_prime_UTR 57584699 57584776 57584699 ID=Msa0609990-mRNA-1:five_prime_utr;Parent=Msa0609990-mRNA-1
chr4_2 CDS 57584217 57584698 57584217 ID=Msa0609990-mRNA-1:cds;Parent=Msa0609990-mRNA-1
chr4_2 CDS 57584083 57584111 57584083 ID=Msa0609990-mRNA-1:cds;Parent=Msa0609990-mRNA-1
chr4_2 CDS 57583740 57583951 57583740 ID=Msa0609990-mRNA-1:cds;Parent=Msa0609990-mRNA-1
chr4_2 CDS 57583169 57583294 57583169 ID=Msa0609990-mRNA-1:cds;Parent=Msa0609990-mRNA-1
chr4_2 CDS 57582426 57582830 57582426 ID=Msa0609990-mRNA-1:cds;Parent=Msa0609990-mRNA-1
chr4_2 CDS 57581965 57582183 57581965 ID=Msa0609990-mRNA-1:cds;Parent=Msa0609990-mRNA-1
chr4_2 three_prime_UTR 57581083 57581964 57581083 ID=Msa0609990-mRNA-1:three_prime_utr;Parent=Msa0609990-mRNA-1
Gene Sequence

>Msa0609990

ATGGCTACAATCTTTTCTGGAGGTTCAGTTTCACTCTTCTCTTTTCACACAAACAAGGGTAAATCATCTTTTGCAACCAAAGGACCAACTCTTCATCTGAAGAAACCTTTCTCTGTCAAATCAGTAGCTTCACTTGGAACTGAAACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTACAAGAAGAAGGTGTTATCACTGCCAAGACACCAGTGAAAGCTAGTGTGGTACCAGAAGGTTTAGGATTGGTTGCACTCAAAGATATTTCTAGAAATGATGTTATTTTGCAGGTGCCTAAGAGGTTGTGGATAAATCCTGATGCTGTTGCTGCTTCAGAGATAGGGAGGGTGTGTAGTAAGTTGACACCATGGTTGTCTGTTATGTTGTTTCTTATTAGAGAAAGGTCAAGAGAGGATTCTGTTTGGAAGCATTACTTTGGTATTCTGCCACAGGAAACTGATTCTACAATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTGAACACAACACTGTCTGTGAAAGAATATGTGAAGAATGAGTGTCTGAAACTGGAAAAAGAAATCATTCTTCCTAATAAGAAGCTTTTTCCTTCTCCTGTAACACTGGATGACTTCTTCTGGGCATTTGGAATTCTTAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCACTTGCAGACTTGATTAACCACAGTGCCAGAGTGACTACAGATGATCATGCTTATGAAGTCAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTATTTGCCCTAAGGAGCCCTCTTTCTGTCAAGGCAGGAGAACAGGTGTATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTCTGGACTATGGTTTCATTGAACCAAATGCAGATCGATATGCATACACCTTGACACTGGGGATATCCGAGTCAGACCCTTTTTTTGACGACAAAGTAGACGTTGCTGAGACCAATGGTTTTTCTCAGACAGCATACTTTGACATCTTCTATAACCGCCCTCTTCCAGAAGGGATGCTTCCATATCTGAGATTAGTAGCACTAGGGGGTACCGATGCTTTCTTATTGGAATCACTGTTCAGAGACTCCATCTGGGGTCATCTTGAGGTGCCCATGAGCCGTGATAATGAGGAGCTAGTATGCAAAGCGGTTCGAGATGCCTGCAAATCCGCCCTTGCTGGTTATCACACAACCATTGAACAGGATCGCAAGCTGAAAGAGGCAAATCTAGATTCAAGGCTTGCAATAGCAGTCGGAATAAGAGAAGGGGAAAAAATGATCCTGCAGCAAATTGATGAGATCTTCGAGCAGAAAGAATTGGAACTAGATCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGTGAAAGTGGTGATGTCCTTGGAGACCTTGCAAAATACTTCTAA

Protein sequence

>Msa0609990

MATIFSGGSVSLFSFHTNKGKSSFATKGPTLHLKKPFSVKSVASLGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSKLTPWLSVMLFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKKLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTDDHAYEVKGPAGLFSWDYLFALRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRYAYTLTLGISESDPFFDDKVDVAETNGFSQTAYFDIFYNRPLPEGMLPYLRLVALGGTDAFLLESLFRDSIWGHLEVPMSRDNEELVCKAVRDACKSALAGYHTTIEQDRKLKEANLDSRLAIAVGIREGEKMILQQIDEIFEQKELELDQLEYYQERRLKDLGLCGESGDVLGDLAKYF*