AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1054890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054890 MtrunA17_Chr7g0225561 84.925 199 22 3 1 192 1 198 7.93e-96 276
Msa1054890 MtrunA17_Chr4g0057961 49.180 122 47 5 74 189 35 147 1.99e-25 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054890 AT3G27160.1 44.670 197 85 4 1 189 1 181 1.23e-38 131
Msa1054890 AT3G27160.2 44.388 196 85 4 1 188 1 180 8.90e-38 130
Msa1054890 AT5G63300.1 39.496 119 62 4 74 189 66 177 8.17e-21 85.5
Msa1054890 AT5G63300.2 45.205 73 39 1 74 145 66 138 2.57e-15 71.6

Find 59 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCATCCTCTTCCTTCT+TGG 0.209987 7_2:-27912569 None:intergenic
CTGAAGAGAGGTTGCTTAAT+AGG 0.214327 7_2:+27910794 Msa1054890:CDS
TCCTCTTCCTTCTTGGGTTT+CGG 0.224209 7_2:-27912562 None:intergenic
ACAATAACTTGAACATTATA+TGG 0.232267 7_2:-27910757 None:intergenic
TCATCATCCTCTTCCTTCTT+GGG 0.320409 7_2:-27912568 None:intergenic
AGGAAGAGGATGATGATAAC+TGG 0.330861 7_2:+27912575 Msa1054890:CDS
TTCAAGAATGTAAGAGAAGA+AGG 0.347281 7_2:+27910848 Msa1054890:CDS
TGAACTTGTTGTTACGGTTT+TGG 0.347351 7_2:-27910606 None:intergenic
AAATACAATAATTAAGTCTA+AGG 0.353871 7_2:-27912726 None:intergenic
ATTTATAACTAGTGCATGAT+AGG 0.361311 7_2:-27912899 None:intergenic
AAATTTAGTACATCCTCTTC+AGG 0.383834 7_2:-27912604 None:intergenic
CTATTAAGCAACCTCTCTTC+AGG 0.403889 7_2:-27910793 None:intergenic
GGTTGTTGTGGTGACTTTGT+TGG 0.420698 7_2:-27910550 None:intergenic
CGAAGGGAATGAGAAGAAGT+TGG 0.430722 7_2:-27910524 None:intergenic
GGATTTAAATTGATGCAAGA+GGG 0.464243 7_2:-27912858 None:intergenic
GGAGAGAGAAGTTGAGAGGG+TGG 0.469049 7_2:-27910571 None:intergenic
TAGGTAAATTCAACAACATA+GGG 0.470549 7_2:-27912880 None:intergenic
TTCACCAACATCATCATCAA+TGG 0.471422 7_2:+27910483 Msa1054890:exon
CGTAGAGAGGTTATGAGAGC+TGG 0.485901 7_2:+27910820 Msa1054890:CDS
CTAAGCGTAATCGTAGGAAC+AGG 0.488387 7_2:+27910920 Msa1054890:CDS
GACATATCTTGTGGTGGTTG+TGG 0.492878 7_2:-27910694 None:intergenic
GGTGACTTTGTTGGTGGCGA+AGG 0.493495 7_2:-27910541 None:intergenic
AATGGAGAGAGAAGTTGAGA+GGG 0.496545 7_2:-27910574 None:intergenic
TAGTTGTTGTACTGTCCTCT+TGG 0.497512 7_2:-27912526 None:intergenic
TAAATTGATGCAAGAGGGGA+GGG 0.509918 7_2:-27912853 None:intergenic
CATGCACTAGTTATAAATCA+AGG 0.514992 7_2:+27912904 Msa1054890:three_prime_UTR
TTTCAGGCGTCCTATGGGAG+GGG 0.515442 7_2:+27912495 Msa1054890:intron
TTCAGGCGTCCTATGGGAGG+GGG 0.516394 7_2:+27912496 Msa1054890:intron
AGTTGAGAGGGTGGTTGTTG+TGG 0.527272 7_2:-27910562 None:intergenic
GGGATTTAAATTGATGCAAG+AGG 0.530018 7_2:-27912859 None:intergenic
TGATGTGATTGATGAAGAAA+AGG 0.530928 7_2:-27910656 None:intergenic
ATAGGTAAATTCAACAACAT+AGG 0.534847 7_2:-27912881 None:intergenic
GCTTAATAGGTTTCGTAGAG+AGG 0.539971 7_2:+27910807 Msa1054890:CDS
ATCGTAGGAACAGGTTTCCT+AGG 0.543908 7_2:+27910929 Msa1054890:CDS
GTGGTATGAACTTGTTGTTA+CGG 0.544913 7_2:-27910612 None:intergenic
GAGGACAGTACAACAACTAC+AGG 0.547409 7_2:+27912530 Msa1054890:CDS
GAATGAGAAGAAGTTGGAGA+AGG 0.552897 7_2:-27910518 None:intergenic
TGAAAATAATGATAAGATTG+TGG 0.555204 7_2:-27910464 None:intergenic
GAGAGGCTTTGTCTGCGTGT+AGG 0.570087 7_2:+27912676 Msa1054890:three_prime_UTR
TGTTGTGGTGACTTTGTTGG+TGG 0.570625 7_2:-27910547 None:intergenic
GATTTAAATTGATGCAAGAG+GGG 0.574517 7_2:-27912857 None:intergenic
AGATGATTTCAGAGAATCGA+GGG 0.575421 7_2:-27912825 None:intergenic
GTGACTTTGTTGGTGGCGAA+GGG 0.576330 7_2:-27910540 None:intergenic
GAATGGAGAGAGAAGTTGAG+AGG 0.578830 7_2:-27910575 None:intergenic
TCAGGCGTCCTATGGGAGGG+GGG 0.579646 7_2:+27912497 Msa1054890:intron
TCCGAAACCCAAGAAGGAAG+AGG 0.590977 7_2:+27912561 Msa1054890:CDS
GGAAGAGGATGATGATAACT+GGG 0.591765 7_2:+27912576 Msa1054890:CDS
TCATTGCGGCTTAGAACAAG+TGG 0.596369 7_2:-27910631 None:intergenic
TTAAATTGATGCAAGAGGGG+AGG 0.599151 7_2:-27912854 None:intergenic
TAACTGGGATCTACCTGAAG+AGG 0.601353 7_2:+27912591 Msa1054890:CDS
AGATGATCCGAAACCCAAGA+AGG 0.631392 7_2:+27912555 Msa1054890:CDS
AGAGCCATTGATGATGATGT+TGG 0.656153 7_2:-27910487 None:intergenic
CTTGAAGACATATCTTGTGG+TGG 0.675392 7_2:-27910700 None:intergenic
ATGCTGCTAAGCGTAATCGT+AGG 0.678424 7_2:+27910914 Msa1054890:CDS
AAGATGATTTCAGAGAATCG+AGG 0.681123 7_2:-27912826 None:intergenic
ATGAAGAAAAGGTTTCATTG+CGG 0.693747 7_2:-27910645 None:intergenic
AAGATGATGAGCCTGAAGAG+AGG 0.695325 7_2:+27910782 Msa1054890:CDS
AGGTAAATTCAACAACATAG+GGG 0.698917 7_2:-27912879 None:intergenic
AAACTTGAAGACATATCTTG+TGG 0.702615 7_2:-27910703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTCTTAAATTATTAA+CGG - chr7_2:27911111-27911130 None:intergenic 10.0%
!!! TTTGTTTTTGTTAATTGTTT+TGG + chr7_2:27910992-27911011 Msa1054890:intron 15.0%
!! AAATACAATAATTAAGTCTA+AGG - chr7_2:27912729-27912748 None:intergenic 15.0%
!! TGAAAATAATGATAAGATTG+TGG - chr7_2:27910467-27910486 None:intergenic 20.0%
!! ACAATAACTTGAACATTATA+TGG - chr7_2:27910760-27910779 None:intergenic 20.0%
!!! ATTTTCATAATAACATACCT+AGG - chr7_2:27910949-27910968 None:intergenic 20.0%
!! ACAAAAAATTAAATGAAGCA+CGG - chr7_2:27911225-27911244 None:intergenic 20.0%
!! TTTAATAATGTTCAAATTCG+TGG - chr7_2:27911509-27911528 None:intergenic 20.0%
!! GTTAATTATAATCAAATTCG+TGG + chr7_2:27911581-27911600 Msa1054890:intron 20.0%
!! AAATCTGACAACTTTATAAA+CGG - chr7_2:27911680-27911699 None:intergenic 20.0%
!! TTTATAAAGTTGTCAGATTT+CGG + chr7_2:27911680-27911699 Msa1054890:intron 20.0%
!! TTCTAAACTGTTATTCAAAT+GGG + chr7_2:27911705-27911724 Msa1054890:intron 20.0%
!!! TGTAGCTTAATTTATTTTGT+TGG + chr7_2:27912189-27912208 Msa1054890:intron 20.0%
!!! GTAGCTTAATTTATTTTGTT+GGG + chr7_2:27912190-27912209 Msa1054890:intron 20.0%
!!! TAGCTTAATTTATTTTGTTG+GGG + chr7_2:27912191-27912210 Msa1054890:intron 20.0%
!! TGAAAAATCATACATAATGT+GGG - chr7_2:27912645-27912664 None:intergenic 20.0%
!!! GCTTCATTTAATTTTTTGTG+TGG + chr7_2:27911226-27911245 Msa1054890:intron 25.0%
!!! ATTTAATTTTTTGTGTGGAC+CGG + chr7_2:27911231-27911250 Msa1054890:intron 25.0%
! ATAATCAAATTCGTGGATAA+TGG + chr7_2:27911588-27911607 Msa1054890:intron 25.0%
! TAATCAAATTCGTGGATAAT+GGG + chr7_2:27911589-27911608 Msa1054890:intron 25.0%
!! GTTCTAAACTGTTATTCAAA+TGG + chr7_2:27911704-27911723 Msa1054890:intron 25.0%
! TAAATGGTTGTAGAAAAAGA+TGG + chr7_2:27911840-27911859 Msa1054890:intron 25.0%
!!! TTCTCATTTTTGTAGGTAAA+TGG + chr7_2:27911870-27911889 Msa1054890:intron 25.0%
!!! TAGTGTTTTGATTTATGACT+GGG + chr7_2:27911909-27911928 Msa1054890:intron 25.0%
! CATCTTTAATACCTTGATAA+TGG + chr7_2:27911976-27911995 Msa1054890:intron 25.0%
! TCATAACTATACCATTATCA+AGG - chr7_2:27911990-27912009 None:intergenic 25.0%
!!! AAAGTTGATGTTTCAACTTA+TGG - chr7_2:27912032-27912051 None:intergenic 25.0%
! TTGTTGGGGTTATTAAATAT+AGG + chr7_2:27912205-27912224 Msa1054890:intron 25.0%
!! TTTATTTAAAACCTCCAGTT+GGG + chr7_2:27912396-27912415 Msa1054890:intron 25.0%
! GAAAAATCATACATAATGTG+GGG - chr7_2:27912644-27912663 None:intergenic 25.0%
! GTGAAAAATCATACATAATG+TGG - chr7_2:27912646-27912665 None:intergenic 25.0%
! TAGGTAAATTCAACAACATA+GGG - chr7_2:27912883-27912902 None:intergenic 25.0%
! ATAGGTAAATTCAACAACAT+AGG - chr7_2:27912884-27912903 None:intergenic 25.0%
! ATTTATAACTAGTGCATGAT+AGG - chr7_2:27912902-27912921 None:intergenic 25.0%
ATGAAGAAAAGGTTTCATTG+CGG - chr7_2:27910648-27910667 None:intergenic 30.0%
TGATGTGATTGATGAAGAAA+AGG - chr7_2:27910659-27910678 None:intergenic 30.0%
AAACTTGAAGACATATCTTG+TGG - chr7_2:27910706-27910725 None:intergenic 30.0%
TTCAAGAATGTAAGAGAAGA+AGG + chr7_2:27910848-27910867 Msa1054890:CDS 30.0%
!!! AAGGTTTTTTGAGAATACAC+AGG + chr7_2:27910867-27910886 Msa1054890:CDS 30.0%
!!! TGAGTGTTTGGTTTTAGTAT+TGG + chr7_2:27911038-27911057 Msa1054890:intron 30.0%
!!! TTTAATTTTTTGTGTGGACC+GGG + chr7_2:27911232-27911251 Msa1054890:intron 30.0%
ATTTAACACTGATGCATTCT+TGG + chr7_2:27911337-27911356 Msa1054890:intron 30.0%
CATTTCATTCGAGTATTCTT+GGG + chr7_2:27911410-27911429 Msa1054890:intron 30.0%
ATTTGAACACATGAGAATTG+TGG + chr7_2:27911559-27911578 Msa1054890:intron 30.0%
AATCAAATTCGTGGATAATG+GGG + chr7_2:27911590-27911609 Msa1054890:intron 30.0%
TAAACTGTTATTCAAATGGG+AGG + chr7_2:27911708-27911727 Msa1054890:intron 30.0%
! AGGTAGTTGATATCAATTTC+AGG + chr7_2:27911728-27911747 Msa1054890:intron 30.0%
ACACTATCATGTTAGGTAAA+TGG + chr7_2:27911824-27911843 Msa1054890:intron 30.0%
!! TTCATCGTTCTCATTTTTGT+AGG + chr7_2:27911863-27911882 Msa1054890:intron 30.0%
! TTTTGTAGGTAAATGGAAGT+AGG + chr7_2:27911877-27911896 Msa1054890:intron 30.0%
!!! CTAGTGTTTTGATTTATGAC+TGG + chr7_2:27911908-27911927 Msa1054890:intron 30.0%
! CAAGGTATTAAAGATGCATT+TGG - chr7_2:27911972-27911991 None:intergenic 30.0%
GGGGTTATTAAATATAGGTT+TGG + chr7_2:27912210-27912229 Msa1054890:intron 30.0%
TAAATATAGGTTTGGATCAG+AGG + chr7_2:27912218-27912237 Msa1054890:intron 30.0%
!!! CAACTGGAGGTTTTAAATAA+AGG - chr7_2:27912397-27912416 None:intergenic 30.0%
! CTTTATTTAAAACCTCCAGT+TGG + chr7_2:27912395-27912414 Msa1054890:intron 30.0%
! TTATTTAAAACCTCCAGTTG+GGG + chr7_2:27912397-27912416 Msa1054890:intron 30.0%
AAATTTAGTACATCCTCTTC+AGG - chr7_2:27912607-27912626 None:intergenic 30.0%
! TTTTCACATTTTACTGTGAG+AGG + chr7_2:27912659-27912678 Msa1054890:three_prime_UTR 30.0%
GATTTAAATTGATGCAAGAG+GGG - chr7_2:27912860-27912879 None:intergenic 30.0%
GGATTTAAATTGATGCAAGA+GGG - chr7_2:27912861-27912880 None:intergenic 30.0%
AGGTAAATTCAACAACATAG+GGG - chr7_2:27912882-27912901 None:intergenic 30.0%
TTCACCAACATCATCATCAA+TGG + chr7_2:27910483-27910502 Msa1054890:exon 35.0%
!!! TGAACTTGTTGTTACGGTTT+TGG - chr7_2:27910609-27910628 None:intergenic 35.0%
!! GTGGTATGAACTTGTTGTTA+CGG - chr7_2:27910615-27910634 None:intergenic 35.0%
GAGCTAGATATGACTGTAAT+GGG + chr7_2:27911292-27911311 Msa1054890:intron 35.0%
AAATTTGAACCTAAGACCTC+TGG + chr7_2:27911364-27911383 Msa1054890:intron 35.0%
CCAAGAATACTCGAATGAAA+TGG - chr7_2:27911412-27911431 None:intergenic 35.0%
CCATTTCATTCGAGTATTCT+TGG + chr7_2:27911409-27911428 Msa1054890:intron 35.0%
!! AGTATTCTTGGGCTAGTATT+AGG + chr7_2:27911421-27911440 Msa1054890:intron 35.0%
GACACCACAAATATCTAGAT+TGG + chr7_2:27911450-27911469 Msa1054890:intron 35.0%
CCATCCAATCTAGATATTTG+TGG - chr7_2:27911457-27911476 None:intergenic 35.0%
CCACAAATATCTAGATTGGA+TGG + chr7_2:27911454-27911473 Msa1054890:intron 35.0%
ACTCATGGTTAGTGATATGT+TGG - chr7_2:27911643-27911662 None:intergenic 35.0%
GTTAACACAATTCTCACTCA+TGG - chr7_2:27911658-27911677 None:intergenic 35.0%
!! AAGAGCGTTTAGAGCTTATT+TGG - chr7_2:27911949-27911968 None:intergenic 35.0%
GTTGATGTTTCAACTTATGG+TGG - chr7_2:27912029-27912048 None:intergenic 35.0%
! TGCATGTGAATGTGTTCTTT+TGG + chr7_2:27912064-27912083 Msa1054890:intron 35.0%
CTCTCTTCATGTCGTATATT+TGG - chr7_2:27912133-27912152 None:intergenic 35.0%
!!! CATCAATTGCAGTTTTGTTG+CGG + chr7_2:27912320-27912339 Msa1054890:intron 35.0%
! CACGGAAAACTGATTTATCA+CGG + chr7_2:27912352-27912371 Msa1054890:intron 35.0%
GAAAATGATGCAAGATACAC+AGG - chr7_2:27912479-27912498 None:intergenic 35.0%
! GTGTATCTTGCATCATTTTC+AGG + chr7_2:27912479-27912498 Msa1054890:intron 35.0%
AGATGATTTCAGAGAATCGA+GGG - chr7_2:27912828-27912847 None:intergenic 35.0%
AAGATGATTTCAGAGAATCG+AGG - chr7_2:27912829-27912848 None:intergenic 35.0%
GGGATTTAAATTGATGCAAG+AGG - chr7_2:27912862-27912881 None:intergenic 35.0%
!! AGAGCCATTGATGATGATGT+TGG - chr7_2:27910490-27910509 None:intergenic 40.0%
GAATGAGAAGAAGTTGGAGA+AGG - chr7_2:27910521-27910540 None:intergenic 40.0%
AATGGAGAGAGAAGTTGAGA+GGG - chr7_2:27910577-27910596 None:intergenic 40.0%
!! TGTTACGGTTTTGGTGAGAT+GGG - chr7_2:27910600-27910619 None:intergenic 40.0%
!! TTGTTACGGTTTTGGTGAGA+TGG - chr7_2:27910601-27910620 None:intergenic 40.0%
CTTGAAGACATATCTTGTGG+TGG - chr7_2:27910703-27910722 None:intergenic 40.0%
CTATTAAGCAACCTCTCTTC+AGG - chr7_2:27910796-27910815 None:intergenic 40.0%
CTGAAGAGAGGTTGCTTAAT+AGG + chr7_2:27910794-27910813 Msa1054890:CDS 40.0%
GCTTAATAGGTTTCGTAGAG+AGG + chr7_2:27910807-27910826 Msa1054890:CDS 40.0%
! TGGATAATTTGTGCACGAAG+AGG + chr7_2:27911012-27911031 Msa1054890:intron 40.0%
ACGAAGAGGAATTGAGTGTT+TGG + chr7_2:27911026-27911045 Msa1054890:intron 40.0%
TATATGTGCCCGTATTGTGT+CGG + chr7_2:27911147-27911166 Msa1054890:intron 40.0%
TCTTCAAATAAGTCGTGACC+TGG - chr7_2:27911198-27911217 None:intergenic 40.0%
! TACAGTCATATCTAGCTCGA+GGG - chr7_2:27911290-27911309 None:intergenic 40.0%
! TTACAGTCATATCTAGCTCG+AGG - chr7_2:27911291-27911310 None:intergenic 40.0%
CGAGCTAGATATGACTGTAA+TGG + chr7_2:27911291-27911310 Msa1054890:intron 40.0%
ACCTAAGACCTCTGGTTAAA+CGG + chr7_2:27911372-27911391 Msa1054890:intron 40.0%
ATCTCTTTCCGTTTAACCAG+AGG - chr7_2:27911383-27911402 None:intergenic 40.0%
TGTTCAAATCTACCTGCAGT+TGG - chr7_2:27911548-27911567 None:intergenic 40.0%
GGTTAGTGATATGTTGGACT+TGG - chr7_2:27911637-27911656 None:intergenic 40.0%
TTTCAGGAATCAACCTTTCC+TGG + chr7_2:27911744-27911763 Msa1054890:intron 40.0%
! CGATTTTTGACAAGCACATG+TGG - chr7_2:27911780-27911799 None:intergenic 40.0%
! CTAACATGATAGTGTGACAC+AGG - chr7_2:27911819-27911838 None:intergenic 40.0%
CTGTGTCACACTATCATGTT+AGG + chr7_2:27911817-27911836 Msa1054890:intron 40.0%
TGGATCAGAGGTTTAAACAG+CGG + chr7_2:27912230-27912249 Msa1054890:intron 40.0%
CTTGACATTGTGAGCAATCA+CGG + chr7_2:27912278-27912297 Msa1054890:intron 40.0%
TGCAATTGATGCCACATTGA+TGG - chr7_2:27912311-27912330 None:intergenic 40.0%
!!! TTGCAGTTTTGTTGCGGTTT+TGG + chr7_2:27912326-27912345 Msa1054890:intron 40.0%
!! ATCATTTTCAGGCGTCCTAT+GGG + chr7_2:27912490-27912509 Msa1054890:intron 40.0%
TAGTTGTTGTACTGTCCTCT+TGG - chr7_2:27912529-27912548 None:intergenic 40.0%
TCATCATCCTCTTCCTTCTT+GGG - chr7_2:27912571-27912590 None:intergenic 40.0%
ATCATCATCCTCTTCCTTCT+TGG - chr7_2:27912572-27912591 None:intergenic 40.0%
AGGAAGAGGATGATGATAAC+TGG + chr7_2:27912575-27912594 Msa1054890:CDS 40.0%
GGAAGAGGATGATGATAACT+GGG + chr7_2:27912576-27912595 Msa1054890:CDS 40.0%
TAAATTGATGCAAGAGGGGA+GGG - chr7_2:27912856-27912875 None:intergenic 40.0%
TTAAATTGATGCAAGAGGGG+AGG - chr7_2:27912857-27912876 None:intergenic 40.0%
CGAAGGGAATGAGAAGAAGT+TGG - chr7_2:27910527-27910546 None:intergenic 45.0%
TGTTGTGGTGACTTTGTTGG+TGG - chr7_2:27910550-27910569 None:intergenic 45.0%
GGTTGTTGTGGTGACTTTGT+TGG - chr7_2:27910553-27910572 None:intergenic 45.0%
GAATGGAGAGAGAAGTTGAG+AGG - chr7_2:27910578-27910597 None:intergenic 45.0%
TCATTGCGGCTTAGAACAAG+TGG - chr7_2:27910634-27910653 None:intergenic 45.0%
GACATATCTTGTGGTGGTTG+TGG - chr7_2:27910697-27910716 None:intergenic 45.0%
AAGATGATGAGCCTGAAGAG+AGG + chr7_2:27910782-27910801 Msa1054890:CDS 45.0%
ATGCTGCTAAGCGTAATCGT+AGG + chr7_2:27910914-27910933 Msa1054890:CDS 45.0%
CTAAGCGTAATCGTAGGAAC+AGG + chr7_2:27910920-27910939 Msa1054890:CDS 45.0%
ATCGTAGGAACAGGTTTCCT+AGG + chr7_2:27910929-27910948 Msa1054890:CDS 45.0%
TGGTTATGAAGCACGAACAC+CGG + chr7_2:27911058-27911077 Msa1054890:intron 45.0%
TCTCTGGTTGCAACTGCATA+CGG + chr7_2:27911257-27911276 Msa1054890:intron 45.0%
TCCGTTTAACCAGAGGTCTT+AGG - chr7_2:27911376-27911395 None:intergenic 45.0%
! ATTTCAAGTGCTCCAACTGC+AGG + chr7_2:27911533-27911552 Msa1054890:intron 45.0%
TGGAAAACATACGCCAGGAA+AGG - chr7_2:27911760-27911779 None:intergenic 45.0%
ACATGTGGAAAACATACGCC+AGG - chr7_2:27911765-27911784 None:intergenic 45.0%
GACAGCAAGAACTACTGTGA+AGG + chr7_2:27912094-27912113 Msa1054890:intron 45.0%
ACTACTGTGAAGGTAGTTCC+AGG + chr7_2:27912104-27912123 Msa1054890:intron 45.0%
CTACTGTGAAGGTAGTTCCA+GGG + chr7_2:27912105-27912124 Msa1054890:intron 45.0%
TACTGTGAAGGTAGTTCCAG+GGG + chr7_2:27912106-27912125 Msa1054890:intron 45.0%
ATGTCGTATATTTGGTCCCC+TGG - chr7_2:27912125-27912144 None:intergenic 45.0%
ACGGTCAAATGCCATCAATG+TGG + chr7_2:27912297-27912316 Msa1054890:intron 45.0%
!! TTGTTGCGGTTTTGGCAACA+CGG + chr7_2:27912334-27912353 Msa1054890:intron 45.0%
ATGTCAAACGACGAGAAAGG+GGG - chr7_2:27912443-27912462 None:intergenic 45.0%
CATGTCAAACGACGAGAAAG+GGG - chr7_2:27912444-27912463 None:intergenic 45.0%
CCATGTCAAACGACGAGAAA+GGG - chr7_2:27912445-27912464 None:intergenic 45.0%
TCCATGTCAAACGACGAGAA+AGG - chr7_2:27912446-27912465 None:intergenic 45.0%
!! CATCATTTTCAGGCGTCCTA+TGG + chr7_2:27912489-27912508 Msa1054890:intron 45.0%
GAGGACAGTACAACAACTAC+AGG + chr7_2:27912530-27912549 Msa1054890:CDS 45.0%
AGATGATCCGAAACCCAAGA+AGG + chr7_2:27912555-27912574 Msa1054890:CDS 45.0%
TCCTCTTCCTTCTTGGGTTT+CGG - chr7_2:27912565-27912584 None:intergenic 45.0%
TAACTGGGATCTACCTGAAG+AGG + chr7_2:27912591-27912610 Msa1054890:CDS 45.0%
!! GTGACTTTGTTGGTGGCGAA+GGG - chr7_2:27910543-27910562 None:intergenic 50.0%
AGTTGAGAGGGTGGTTGTTG+TGG - chr7_2:27910565-27910584 None:intergenic 50.0%
!! CGGTTTTGGTGAGATGGGAA+TGG - chr7_2:27910595-27910614 None:intergenic 50.0%
CGTAGAGAGGTTATGAGAGC+TGG + chr7_2:27910820-27910839 Msa1054890:CDS 50.0%
TGTCCGACACCGACACAATA+CGG - chr7_2:27911159-27911178 None:intergenic 50.0%
CAGTTGCAACCAGAGATACC+CGG - chr7_2:27911253-27911272 None:intergenic 50.0%
TGTCAAACGACGAGAAAGGG+GGG - chr7_2:27912442-27912461 None:intergenic 50.0%
CCCTTTCTCGTCGTTTGACA+TGG + chr7_2:27912442-27912461 Msa1054890:intron 50.0%
!! ATTTTCAGGCGTCCTATGGG+AGG + chr7_2:27912493-27912512 Msa1054890:intron 50.0%
!! TTTTCAGGCGTCCTATGGGA+GGG + chr7_2:27912494-27912513 Msa1054890:intron 50.0%
TCCGAAACCCAAGAAGGAAG+AGG + chr7_2:27912561-27912580 Msa1054890:CDS 50.0%
!! GGTGACTTTGTTGGTGGCGA+AGG - chr7_2:27910544-27910563 None:intergenic 55.0%
GGAGAGAGAAGTTGAGAGGG+TGG - chr7_2:27910574-27910593 None:intergenic 55.0%
TGTCAGTCTCGTGTCGTGTC+CGG - chr7_2:27911080-27911099 None:intergenic 55.0%
! TGCCCGTATTGTGTCGGTGT+CGG + chr7_2:27911153-27911172 Msa1054890:intron 55.0%
GTCCGACACCGACACAATAC+GGG - chr7_2:27911158-27911177 None:intergenic 55.0%
CACGACATGTGTTCGACACC+AGG + chr7_2:27911177-27911196 Msa1054890:intron 55.0%
TTGTGTGGACCGGGTATCTC+TGG + chr7_2:27911241-27911260 Msa1054890:intron 55.0%
TGTCATGACACCCCAACTGG+AGG - chr7_2:27912410-27912429 None:intergenic 55.0%
CCATGTCATGACACCCCAAC+TGG - chr7_2:27912413-27912432 None:intergenic 55.0%
! CCAGTTGGGGTGTCATGACA+TGG + chr7_2:27912410-27912429 Msa1054890:intron 55.0%
TTTCAGGCGTCCTATGGGAG+GGG + chr7_2:27912495-27912514 Msa1054890:intron 55.0%
! GAGAGGCTTTGTCTGCGTGT+AGG + chr7_2:27912676-27912695 Msa1054890:three_prime_UTR 55.0%
TTCAGGCGTCCTATGGGAGG+GGG + chr7_2:27912496-27912515 Msa1054890:intron 60.0%
CACGGCTCAGCTTGCAGTCG+CGG + chr7_2:27912370-27912389 Msa1054890:intron 65.0%
TCAGGCGTCCTATGGGAGGG+GGG + chr7_2:27912497-27912516 Msa1054890:intron 65.0%
GGTGACTTCCCCCCTCCCAT+AGG - chr7_2:27912508-27912527 None:intergenic 65.0%
GGAGGGGGGAAGTCACCAAG+AGG + chr7_2:27912511-27912530 Msa1054890:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 27910444 27912924 27910444 ID=Msa1054890;Name=Msa1054890
chr7_2 mRNA 27910444 27912924 27910444 ID=Msa1054890-mRNA-1;Parent=Msa1054890;Name=Msa1054890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=58|1|1|1|1|1|2|294|192
chr7_2 exon 27910444 27910950 27910444 ID=Msa1054890-mRNA-1:exon:5803;Parent=Msa1054890-mRNA-1
chr7_2 exon 27912501 27912924 27912501 ID=Msa1054890-mRNA-1:exon:5804;Parent=Msa1054890-mRNA-1
chr7_2 five_prime_UTR 27910444 27910501 27910444 ID=Msa1054890-mRNA-1:five_prime_utr;Parent=Msa1054890-mRNA-1
chr7_2 CDS 27910502 27910950 27910502 ID=Msa1054890-mRNA-1:cds;Parent=Msa1054890-mRNA-1
chr7_2 CDS 27912501 27912630 27912501 ID=Msa1054890-mRNA-1:cds;Parent=Msa1054890-mRNA-1
chr7_2 three_prime_UTR 27912631 27912924 27912631 ID=Msa1054890-mRNA-1:three_prime_utr;Parent=Msa1054890-mRNA-1
Gene Sequence

>Msa1054890

ATGGCTCTCTCAACTTCCTTCTCCAACTTCTTCTCATTCCCTTCGCCACCAACAAAGTCACCACAACAACCACCCTCTCAACTTCTCTCTCCATTCCCATCTCACCAAAACCGTAACAACAAGTTCATACCACTTGTTCTAAGCCGCAATGAAACCTTTTCTTCATCAATCACATCATCATCTTCATCTTCACCACAACCACCACAAGATATGTCTTCAAGTTTCTCAACATCAAACTCAATGTTCTTAGCATCACCATATAATGTTCAAGTTATTGTTGAAGATGATGAGCCTGAAGAGAGGTTGCTTAATAGGTTTCGTAGAGAGGTTATGAGAGCTGGTATTATTCAAGAATGTAAGAGAAGAAGGTTTTTTGAGAATACACAGGATGAGAAGAAAAGAAGAGTTCGTGATGCTGCTAAGCGTAATCGTAGGAACAGGTTTCCTAGGCGTCCTATGGGAGGGGGGAAGTCACCAAGAGGACAGTACAACAACTACAGGCAAGATGATCCGAAACCCAAGAAGGAAGAGGATGATGATAACTGGGATCTACCTGAAGAGGATGTACTAAATTTTTAA

Protein sequence

>Msa1054890

MALSTSFSNFFSFPSPPTKSPQQPPSQLLSPFPSHQNRNNKFIPLVLSRNETFSSSITSSSSSSPQPPQDMSSSFSTSNSMFLASPYNVQVIVEDDEPEERLLNRFRREVMRAGIIQECKRRRFFENTQDEKKRRVRDAAKRNRRNRFPRRPMGGGKSPRGQYNNYRQDDPKPKKEEDDDNWDLPEEDVLNF*