AlfalfaGEDB | Msa0172370

M. sativa cultivar zhongmu-4 / Msa0172370

KEGG: K03116
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033281 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0055035 GO:0071944 GO:0098796 GO:0098797
PFAM: PF02416.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172370	sp\|Q9XH46\|TATA_PEA	79.021	143	23	2	1	142	1	137	1.93e-59	183

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172370	B7FMF0	88.966	145	7	2	1	142	1	139	1.82e-68	212

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0172370	0.830855	2.321495e-55	-8.615850e-47
Msa0001460	Msa0172370	0.844135	9.120360e-59	-8.615850e-47
Msa0006050	Msa0172370	0.836733	7.870442e-57	-8.615850e-47
Msa0006700	Msa0172370	0.826145	3.185440e-54	-8.615850e-47
Msa0008850	Msa0172370	0.817256	3.624713e-52	-8.615850e-47
Msa0012460	Msa0172370	0.819732	9.950421e-53	-8.615850e-47
Msa0015370	Msa0172370	0.818522	1.875704e-52	-8.615850e-47
Msa0017120	Msa0172370	0.842287	2.836166e-58	-8.615850e-47
Msa0017420	Msa0172370	0.814599	1.419150e-51	-8.615850e-47
Msa0018870	Msa0172370	0.805852	1.092701e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172370	MtrunA17_Chr1g0190751	88.966	145	7	2	1	142	1	139	3.51e-72	212
Msa0172370	MtrunA17_Chr7g0274161	70.707	99	24	2	49	142	46	144	7.01e-41	133
Msa0172370	MtrunA17_Chr1g0202801	40.260	77	45	1	51	127	75	150	6.27e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0172370	AT5G28750.1	62.105	95	31	2	49	138	48	142	7.46e-36	121
Msa0172370	AT5G52440.1	52.083	48	23	0	62	109	85	132	4.62e-11	59.3

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Find 51 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGTCAAAAGCTTCCAAC+AGG	0.455252	1_4:+57396606	Msa0172370:CDS
AAGTGGGGTAGTATTGGAAT+TGG	0.380780	1_4:-57396407	None:intergenic
AATCCGCAAACTAACAAGCG+TGG	0.619744	1_4:+57396237	Msa0172370:five_prime_UTR
ACGCTTGTTAGTTTGCGGAT+TGG	0.466644	1_4:-57396235	None:intergenic
ACGCTTTGTGCTTCTGTTTC+TGG	0.042249	1_4:-57396467	None:intergenic
AGGTAGTTAAAGAATAATTG+AGG	0.559563	1_4:+57397220	Msa0172370:three_prime_UTR
ATCAACAACTATTTCATGAA+AGG	0.538422	1_4:-57397302	None:intergenic
ATCCGCAAACTAACAAGCGT+GGG	0.632683	1_4:+57396238	Msa0172370:five_prime_UTR
ATGAAGAGATTGGAAGCCTA+GGG	0.550257	1_4:-57396357	None:intergenic
ATTGGAAGCTAAGAAGGATA+AGG	0.521310	1_4:-57396389	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCGAATTAAAGAAGAAGAAA+GGG	-	chr1_4:57396338-57396357	None:intergenic	30.0%
ATGTAGAACTCCTATATGTT+AGG	-	chr1_4:57396683-57396702	None:intergenic	30.0%
TCATTCGTTGTATTTGAATG+AGG	+	chr1_4:57396838-57396857	Msa0172370:intron	30.0%
CATTATTGTCTTGATCTTCT+TGG	-	chr1_4:57397013-57397032	None:intergenic	30.0%
AAAAAGCTTCGAATTGCTTT+AGG	-	chr1_4:57397253-57397272	None:intergenic	30.0%
GCGAATTAAAGAAGAAGAAA+GGG	-	chr1_4:57396338-57396357	None:intergenic	30.0%
ATGTAGAACTCCTATATGTT+AGG	-	chr1_4:57396683-57396702	None:intergenic	30.0%
TCATTCGTTGTATTTGAATG+AGG	+	chr1_4:57396838-57396857	Msa0172370:intron	30.0%
CATTATTGTCTTGATCTTCT+TGG	-	chr1_4:57397013-57397032	None:intergenic	30.0%
AAAAAGCTTCGAATTGCTTT+AGG	-	chr1_4:57397253-57397272	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	57396182	57397313	57396182	ID=Msa0172370;Name=Msa0172370
chr1_4	mRNA	57396182	57397313	57396182	ID=Msa0172370-mRNA-1;Parent=Msa0172370;Name=Msa0172370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=137\|1\|1\|1\|1\|1\|2\|255\|142
chr1_4	exon	57396182	57396627	57396182	ID=Msa0172370-mRNA-1:exon:17557;Parent=Msa0172370-mRNA-1
chr1_4	exon	57396939	57397313	57396939	ID=Msa0172370-mRNA-1:exon:17558;Parent=Msa0172370-mRNA-1
chr1_4	five_prime_UTR	57396182	57396318	57396182	ID=Msa0172370-mRNA-1:five_prime_utr;Parent=Msa0172370-mRNA-1
chr1_4	CDS	57396319	57396627	57396319	ID=Msa0172370-mRNA-1:cds;Parent=Msa0172370-mRNA-1
chr1_4	CDS	57396939	57397058	57396939	ID=Msa0172370-mRNA-1:cds;Parent=Msa0172370-mRNA-1
chr1_4	three_prime_UTR	57397059	57397313	57397059	ID=Msa0172370-mRNA-1:three_prime_utr;Parent=Msa0172370-mRNA-1

Gene Sequence

>Msa0172370

ATGGAGACAACACTTTCCCTTTCTTCTTCTTTAATTCGCCCTAGGCTTCCAATCTCTTCATCCTATTCCACCTTATCCTTCTTAGCTTCCAATTCCAATACTACCCCACTTCTCTTGAAGAAAGCCAGAACCAGAACCAGAACCAGAACCAGAAACAGAAGCACAAAGCGTTTTACTTGCAACGCCTTCTTCGGATTAGGCGTGCCCGAGCTTGTTGTTATTGCAGGAGTCGCTGCTCTTGTTTTCGGTCCTAAGAAATTGCCCGAAGTTGGTCGCAGCATCGGCAAAACTGTCAAAAGCTTCCAACAGGCAGCAAAGGAGTTTGAGACCGAGTTAAAAAAGGAACCTAATTCTACTGAAGAAATTTCTGTTGCGAATGACCAAGAAGATCAAGACAATAATGTTTCTAGTACAAAGGATAGTGTATGA

Protein sequence

>Msa0172370

METTLSLSSSLIRPRLPISSSYSTLSFLASNSNTTPLLLKKARTRTRTRTRNRSTKRFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQQAAKEFETELKKEPNSTEEISVANDQEDQDNNVSSTKDSV*