AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172370 MtrunA17_Chr1g0190751 88.966 145 7 2 1 142 1 139 3.51e-72 212
Msa0172370 MtrunA17_Chr7g0274161 70.707 99 24 2 49 142 46 144 7.01e-41 133
Msa0172370 MtrunA17_Chr1g0202801 40.260 77 45 1 51 127 75 150 6.27e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172370 AT5G28750.1 62.105 95 31 2 49 138 48 142 7.46e-36 121
Msa0172370 AT5G52440.1 52.083 48 23 0 62 109 85 132 4.62e-11 59.3

Find 51 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTTGTGCTTCTGTTTC+TGG 0.042249 1_4:-57396467 None:intergenic
CCAACTTCGGGCAATTTCTT+AGG 0.195754 1_4:-57396568 None:intergenic
TCTGGTTCTGGTTCTGGTTC+TGG 0.213224 1_4:-57396443 None:intergenic
TCTGGTTCTGGTTCTGGTTC+TGG 0.213548 1_4:-57396449 None:intergenic
TCTGTTTCTGGTTCTGGTTC+TGG 0.213548 1_4:-57396455 None:intergenic
TGTGCTTCTGTTTCTGGTTC+TGG 0.214615 1_4:-57396461 None:intergenic
CATTATTGTCTTGATCTTCT+TGG 0.219177 1_4:-57397010 None:intergenic
CGCTTGTTAGTTTGCGGATT+GGG 0.221460 1_4:-57396234 None:intergenic
GAAATTTCTTCAGTAGAATT+AGG 0.222712 1_4:-57396975 None:intergenic
CCCGAGCTTGTTGTTATTGC+AGG 0.253511 1_4:+57396523 Msa0172370:CDS
TTTGGTTTGATTCTATTTGC+TGG 0.281151 1_4:-57396295 None:intergenic
GCCGATGCTGCGACCAACTT+CGG 0.342708 1_4:-57396581 None:intergenic
TTTACTTGCAACGCCTTCTT+CGG 0.349544 1_4:+57396490 Msa0172370:CDS
CCGATGCTGCGACCAACTTC+GGG 0.355688 1_4:-57396580 None:intergenic
AAGTGGGGTAGTATTGGAAT+TGG 0.380780 1_4:-57396407 None:intergenic
TAAGAAGGATAAGGTGGAAT+AGG 0.383721 1_4:-57396380 None:intergenic
CACCCACGCTTGTTAGTTTG+CGG 0.404064 1_4:-57396240 None:intergenic
GTGGAATAGGATGAAGAGAT+TGG 0.421445 1_4:-57396367 None:intergenic
GCGAATTAAAGAAGAAGAAA+GGG 0.424605 1_4:-57396335 None:intergenic
CTTCTTCTTTAATTCGCCCT+AGG 0.426973 1_4:+57396341 Msa0172370:CDS
CTGGCTTTCTTCAAGAGAAG+TGG 0.432730 1_4:-57396424 None:intergenic
GGCGAATTAAAGAAGAAGAA+AGG 0.452383 1_4:-57396336 None:intergenic
AACTGTCAAAAGCTTCCAAC+AGG 0.455252 1_4:+57396606 Msa0172370:CDS
CAAGAGAAGTGGGGTAGTAT+TGG 0.456301 1_4:-57396413 None:intergenic
CCCGAAGTTGGTCGCAGCAT+CGG 0.463383 1_4:+57396580 Msa0172370:CDS
ACGCTTGTTAGTTTGCGGAT+TGG 0.466644 1_4:-57396235 None:intergenic
ATTGGAATTGGAAGCTAAGA+AGG 0.471201 1_4:-57396395 None:intergenic
CCTAAGAAATTGCCCGAAGT+TGG 0.474122 1_4:+57396568 Msa0172370:CDS
TGTTAGTTTGCGGATTGGGT+GGG 0.507581 1_4:-57396230 None:intergenic
TGGCTTTCTTCAAGAGAAGT+GGG 0.507905 1_4:-57396423 None:intergenic
TGAAACCTTGTAGGCAGCAA+AGG 0.513076 1_4:+57396926 Msa0172370:intron
TTGTTAGTTTGCGGATTGGG+TGG 0.519809 1_4:-57396231 None:intergenic
TGCAACGCCTTCTTCGGATT+AGG 0.521226 1_4:+57396496 Msa0172370:CDS
ATTGGAAGCTAAGAAGGATA+AGG 0.521310 1_4:-57396389 None:intergenic
TTTCTTCTTCGTGGTAGTTG+AGG 0.532506 1_4:+57397167 Msa0172370:three_prime_UTR
TCCTGCAATAACAACAAGCT+CGG 0.534091 1_4:-57396524 None:intergenic
ATCAACAACTATTTCATGAA+AGG 0.538422 1_4:-57397302 None:intergenic
CAATAATGTTTCTAGTACAA+AGG 0.541741 1_4:+57397025 Msa0172370:CDS
ATGAAGAGATTGGAAGCCTA+GGG 0.550257 1_4:-57396357 None:intergenic
GATGAAGAGATTGGAAGCCT+AGG 0.550349 1_4:-57396358 None:intergenic
CCTGCAATAACAACAAGCTC+GGG 0.555493 1_4:-57396523 None:intergenic
AGGTAGTTAAAGAATAATTG+AGG 0.559563 1_4:+57397220 Msa0172370:three_prime_UTR
GGAAGCTAAGAAGGATAAGG+TGG 0.578078 1_4:-57396386 None:intergenic
GCTGGTTTCTGCTAAATGAG+TGG 0.591161 1_4:-57396277 None:intergenic
GGGCACGCCTAATCCGAAGA+AGG 0.614059 1_4:-57396503 None:intergenic
AATCCGCAAACTAACAAGCG+TGG 0.619744 1_4:+57396237 Msa0172370:five_prime_UTR
ATCCGCAAACTAACAAGCGT+GGG 0.632683 1_4:+57396238 Msa0172370:five_prime_UTR
TGTTACAAGGAACATGCGGT+AGG 0.633411 1_4:+57397200 Msa0172370:three_prime_UTR
TTCTTAATAAAATTGTACCA+TGG 0.641755 1_4:+57397085 Msa0172370:three_prime_UTR
GGCTTTCTTCAAGAGAAGTG+GGG 0.642970 1_4:-57396422 None:intergenic
GTTCTAAATGCATAACACCA+TGG 0.652008 1_4:-57397102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGAAATTGTTTTAT+AGG + chr1_4:57396794-57396813 Msa0172370:intron 10.0%
!!! TAAAATTGAAATTGTTTTAT+AGG + chr1_4:57396794-57396813 Msa0172370:intron 10.0%
!!! CAAATTTTTATTGTTTGTTT+GGG + chr1_4:57396888-57396907 Msa0172370:intron 15.0%
!!! CAAATTTTTATTGTTTGTTT+GGG + chr1_4:57396888-57396907 Msa0172370:intron 15.0%
!! AAATAGAATCAAACCAAAAA+TGG + chr1_4:57396300-57396319 Msa0172370:exon 20.0%
!! GCAATTTCTTATCTAATTAA+CGG + chr1_4:57396705-57396724 Msa0172370:intron 20.0%
!!! GTTTTTAATAATTCAGTTGA+AGG + chr1_4:57396862-57396881 Msa0172370:intron 20.0%
!!! GCAAATTTTTATTGTTTGTT+TGG + chr1_4:57396887-57396906 Msa0172370:intron 20.0%
!! TTCTTAATAAAATTGTACCA+TGG + chr1_4:57397085-57397104 Msa0172370:three_prime_UTR 20.0%
!! AAATAGAATCAAACCAAAAA+TGG + chr1_4:57396300-57396319 Msa0172370:exon 20.0%
!! GCAATTTCTTATCTAATTAA+CGG + chr1_4:57396705-57396724 Msa0172370:intron 20.0%
!!! GTTTTTAATAATTCAGTTGA+AGG + chr1_4:57396862-57396881 Msa0172370:intron 20.0%
!!! GCAAATTTTTATTGTTTGTT+TGG + chr1_4:57396887-57396906 Msa0172370:intron 20.0%
!! TTCTTAATAAAATTGTACCA+TGG + chr1_4:57397085-57397104 Msa0172370:three_prime_UTR 20.0%
! TTATCCTAAGAATGAGAAAA+TGG - chr1_4:57396634-57396653 None:intergenic 25.0%
!!! ATTAGATTTTGAAACCTTGT+AGG + chr1_4:57396917-57396936 Msa0172370:intron 25.0%
!!! ATTAGGTTCCTTTTTTAACT+CGG - chr1_4:57396961-57396980 None:intergenic 25.0%
! GAAATTTCTTCAGTAGAATT+AGG - chr1_4:57396978-57396997 None:intergenic 25.0%
!!! CAATAATGTTTCTAGTACAA+AGG + chr1_4:57397025-57397044 Msa0172370:CDS 25.0%
! ATGTTCCTTGTAACAAAAAA+AGG - chr1_4:57397195-57397214 None:intergenic 25.0%
! AGGTAGTTAAAGAATAATTG+AGG + chr1_4:57397220-57397239 Msa0172370:three_prime_UTR 25.0%
! TTATCCTAAGAATGAGAAAA+TGG - chr1_4:57396634-57396653 None:intergenic 25.0%
!!! ATTAGATTTTGAAACCTTGT+AGG + chr1_4:57396917-57396936 Msa0172370:intron 25.0%
!!! ATTAGGTTCCTTTTTTAACT+CGG - chr1_4:57396961-57396980 None:intergenic 25.0%
! GAAATTTCTTCAGTAGAATT+AGG - chr1_4:57396978-57396997 None:intergenic 25.0%
!!! CAATAATGTTTCTAGTACAA+AGG + chr1_4:57397025-57397044 Msa0172370:CDS 25.0%
! ATGTTCCTTGTAACAAAAAA+AGG - chr1_4:57397195-57397214 None:intergenic 25.0%
! AGGTAGTTAAAGAATAATTG+AGG + chr1_4:57397220-57397239 Msa0172370:three_prime_UTR 25.0%
!! TTTGGTTTGATTCTATTTGC+TGG - chr1_4:57396298-57396317 None:intergenic 30.0%
GCGAATTAAAGAAGAAGAAA+GGG - chr1_4:57396338-57396357 None:intergenic 30.0%
!! ATTTGTTGTGCCTAACATAT+AGG + chr1_4:57396670-57396689 Msa0172370:intron 30.0%
ATGTAGAACTCCTATATGTT+AGG - chr1_4:57396683-57396702 None:intergenic 30.0%
TCATTCGTTGTATTTGAATG+AGG + chr1_4:57396838-57396857 Msa0172370:intron 30.0%
CATTATTGTCTTGATCTTCT+TGG - chr1_4:57397013-57397032 None:intergenic 30.0%
!!! TCTCTTATTTTTCTTCTTCG+TGG + chr1_4:57397158-57397177 Msa0172370:three_prime_UTR 30.0%
!!! AGGTACCTTTTTTTGTTACA+AGG + chr1_4:57397187-57397206 Msa0172370:three_prime_UTR 30.0%
! TTTTTGTTACAAGGAACATG+CGG + chr1_4:57397196-57397215 Msa0172370:three_prime_UTR 30.0%
AAAAAGCTTCGAATTGCTTT+AGG - chr1_4:57397253-57397272 None:intergenic 30.0%
!! TTTGGTTTGATTCTATTTGC+TGG - chr1_4:57396298-57396317 None:intergenic 30.0%
GCGAATTAAAGAAGAAGAAA+GGG - chr1_4:57396338-57396357 None:intergenic 30.0%
!! ATTTGTTGTGCCTAACATAT+AGG + chr1_4:57396670-57396689 Msa0172370:intron 30.0%
ATGTAGAACTCCTATATGTT+AGG - chr1_4:57396683-57396702 None:intergenic 30.0%
TCATTCGTTGTATTTGAATG+AGG + chr1_4:57396838-57396857 Msa0172370:intron 30.0%
CATTATTGTCTTGATCTTCT+TGG - chr1_4:57397013-57397032 None:intergenic 30.0%
!!! TCTCTTATTTTTCTTCTTCG+TGG + chr1_4:57397158-57397177 Msa0172370:three_prime_UTR 30.0%
!!! AGGTACCTTTTTTTGTTACA+AGG + chr1_4:57397187-57397206 Msa0172370:three_prime_UTR 30.0%
! TTTTTGTTACAAGGAACATG+CGG + chr1_4:57397196-57397215 Msa0172370:three_prime_UTR 30.0%
AAAAAGCTTCGAATTGCTTT+AGG - chr1_4:57397253-57397272 None:intergenic 30.0%
! ACTGTGTCAAGAGTTTTCAA+TGG - chr1_4:57396210-57396229 None:intergenic 35.0%
!!! GAAAGTGTTGTCTCCATTTT+TGG - chr1_4:57396316-57396335 None:intergenic 35.0%
GGCGAATTAAAGAAGAAGAA+AGG - chr1_4:57396339-57396358 None:intergenic 35.0%
TAAGAAGGATAAGGTGGAAT+AGG - chr1_4:57396383-57396402 None:intergenic 35.0%
ATTGGAAGCTAAGAAGGATA+AGG - chr1_4:57396392-57396411 None:intergenic 35.0%
ATTGGAATTGGAAGCTAAGA+AGG - chr1_4:57396398-57396417 None:intergenic 35.0%
AATGAGAAAATGGAACCTGT+TGG - chr1_4:57396624-57396643 None:intergenic 35.0%
! GGTTCCATTTTCTCATTCTT+AGG + chr1_4:57396627-57396646 Msa0172370:intron 35.0%
! GTTTGAGACCGAGTTAAAAA+AGG + chr1_4:57396950-57396969 Msa0172370:CDS 35.0%
! GTTCTAAATGCATAACACCA+TGG - chr1_4:57397105-57397124 None:intergenic 35.0%
! ACTGTGTCAAGAGTTTTCAA+TGG - chr1_4:57396210-57396229 None:intergenic 35.0%
!!! GAAAGTGTTGTCTCCATTTT+TGG - chr1_4:57396316-57396335 None:intergenic 35.0%
GGCGAATTAAAGAAGAAGAA+AGG - chr1_4:57396339-57396358 None:intergenic 35.0%
TAAGAAGGATAAGGTGGAAT+AGG - chr1_4:57396383-57396402 None:intergenic 35.0%
ATTGGAAGCTAAGAAGGATA+AGG - chr1_4:57396392-57396411 None:intergenic 35.0%
ATTGGAATTGGAAGCTAAGA+AGG - chr1_4:57396398-57396417 None:intergenic 35.0%
AATGAGAAAATGGAACCTGT+TGG - chr1_4:57396624-57396643 None:intergenic 35.0%
! GGTTCCATTTTCTCATTCTT+AGG + chr1_4:57396627-57396646 Msa0172370:intron 35.0%
! GTTTGAGACCGAGTTAAAAA+AGG + chr1_4:57396950-57396969 Msa0172370:CDS 35.0%
! GTTCTAAATGCATAACACCA+TGG - chr1_4:57397105-57397124 None:intergenic 35.0%
CTTCTTCTTTAATTCGCCCT+AGG + chr1_4:57396341-57396360 Msa0172370:CDS 40.0%
ATGAAGAGATTGGAAGCCTA+GGG - chr1_4:57396360-57396379 None:intergenic 40.0%
GTGGAATAGGATGAAGAGAT+TGG - chr1_4:57396370-57396389 None:intergenic 40.0%
! AAGTGGGGTAGTATTGGAAT+TGG - chr1_4:57396410-57396429 None:intergenic 40.0%
TGGCTTTCTTCAAGAGAAGT+GGG - chr1_4:57396426-57396445 None:intergenic 40.0%
TTTACTTGCAACGCCTTCTT+CGG + chr1_4:57396490-57396509 Msa0172370:CDS 40.0%
TCCTGCAATAACAACAAGCT+CGG - chr1_4:57396527-57396546 None:intergenic 40.0%
AACTGTCAAAAGCTTCCAAC+AGG + chr1_4:57396606-57396625 Msa0172370:CDS 40.0%
TTTCTTCTTCGTGGTAGTTG+AGG + chr1_4:57397167-57397186 Msa0172370:three_prime_UTR 40.0%
CTTCTTCTTTAATTCGCCCT+AGG + chr1_4:57396341-57396360 Msa0172370:CDS 40.0%
ATGAAGAGATTGGAAGCCTA+GGG - chr1_4:57396360-57396379 None:intergenic 40.0%
GTGGAATAGGATGAAGAGAT+TGG - chr1_4:57396370-57396389 None:intergenic 40.0%
! AAGTGGGGTAGTATTGGAAT+TGG - chr1_4:57396410-57396429 None:intergenic 40.0%
TGGCTTTCTTCAAGAGAAGT+GGG - chr1_4:57396426-57396445 None:intergenic 40.0%
TTTACTTGCAACGCCTTCTT+CGG + chr1_4:57396490-57396509 Msa0172370:CDS 40.0%
TCCTGCAATAACAACAAGCT+CGG - chr1_4:57396527-57396546 None:intergenic 40.0%
AACTGTCAAAAGCTTCCAAC+AGG + chr1_4:57396606-57396625 Msa0172370:CDS 40.0%
TTTCTTCTTCGTGGTAGTTG+AGG + chr1_4:57397167-57397186 Msa0172370:three_prime_UTR 40.0%
!! TGTTAGTTTGCGGATTGGGT+GGG - chr1_4:57396233-57396252 None:intergenic 45.0%
!! TTGTTAGTTTGCGGATTGGG+TGG - chr1_4:57396234-57396253 None:intergenic 45.0%
!! CGCTTGTTAGTTTGCGGATT+GGG - chr1_4:57396237-57396256 None:intergenic 45.0%
!! ACGCTTGTTAGTTTGCGGAT+TGG - chr1_4:57396238-57396257 None:intergenic 45.0%
AATCCGCAAACTAACAAGCG+TGG + chr1_4:57396237-57396256 Msa0172370:five_prime_UTR 45.0%
ATCCGCAAACTAACAAGCGT+GGG + chr1_4:57396238-57396257 Msa0172370:five_prime_UTR 45.0%
! GCTGGTTTCTGCTAAATGAG+TGG - chr1_4:57396280-57396299 None:intergenic 45.0%
GATGAAGAGATTGGAAGCCT+AGG - chr1_4:57396361-57396380 None:intergenic 45.0%
GGAAGCTAAGAAGGATAAGG+TGG - chr1_4:57396389-57396408 None:intergenic 45.0%
CAAGAGAAGTGGGGTAGTAT+TGG - chr1_4:57396416-57396435 None:intergenic 45.0%
GGCTTTCTTCAAGAGAAGTG+GGG - chr1_4:57396425-57396444 None:intergenic 45.0%
! CTGGCTTTCTTCAAGAGAAG+TGG - chr1_4:57396427-57396446 None:intergenic 45.0%
!! TCTGTTTCTGGTTCTGGTTC+TGG - chr1_4:57396458-57396477 None:intergenic 45.0%
!! TGTGCTTCTGTTTCTGGTTC+TGG - chr1_4:57396464-57396483 None:intergenic 45.0%
ACGCTTTGTGCTTCTGTTTC+TGG - chr1_4:57396470-57396489 None:intergenic 45.0%
CCTGCAATAACAACAAGCTC+GGG - chr1_4:57396526-57396545 None:intergenic 45.0%
CCAACTTCGGGCAATTTCTT+AGG - chr1_4:57396571-57396590 None:intergenic 45.0%
CCTAAGAAATTGCCCGAAGT+TGG + chr1_4:57396568-57396587 Msa0172370:CDS 45.0%
TGAAACCTTGTAGGCAGCAA+AGG + chr1_4:57396926-57396945 Msa0172370:intron 45.0%
AAACTCCTTTGCTGCCTACA+AGG - chr1_4:57396934-57396953 None:intergenic 45.0%
TGTTACAAGGAACATGCGGT+AGG + chr1_4:57397200-57397219 Msa0172370:three_prime_UTR 45.0%
!! TGTTAGTTTGCGGATTGGGT+GGG - chr1_4:57396233-57396252 None:intergenic 45.0%
!! TTGTTAGTTTGCGGATTGGG+TGG - chr1_4:57396234-57396253 None:intergenic 45.0%
!! CGCTTGTTAGTTTGCGGATT+GGG - chr1_4:57396237-57396256 None:intergenic 45.0%
!! ACGCTTGTTAGTTTGCGGAT+TGG - chr1_4:57396238-57396257 None:intergenic 45.0%
AATCCGCAAACTAACAAGCG+TGG + chr1_4:57396237-57396256 Msa0172370:five_prime_UTR 45.0%
ATCCGCAAACTAACAAGCGT+GGG + chr1_4:57396238-57396257 Msa0172370:five_prime_UTR 45.0%
! GCTGGTTTCTGCTAAATGAG+TGG - chr1_4:57396280-57396299 None:intergenic 45.0%
GATGAAGAGATTGGAAGCCT+AGG - chr1_4:57396361-57396380 None:intergenic 45.0%
GGAAGCTAAGAAGGATAAGG+TGG - chr1_4:57396389-57396408 None:intergenic 45.0%
CAAGAGAAGTGGGGTAGTAT+TGG - chr1_4:57396416-57396435 None:intergenic 45.0%
GGCTTTCTTCAAGAGAAGTG+GGG - chr1_4:57396425-57396444 None:intergenic 45.0%
! CTGGCTTTCTTCAAGAGAAG+TGG - chr1_4:57396427-57396446 None:intergenic 45.0%
!! TCTGTTTCTGGTTCTGGTTC+TGG - chr1_4:57396458-57396477 None:intergenic 45.0%
!! TGTGCTTCTGTTTCTGGTTC+TGG - chr1_4:57396464-57396483 None:intergenic 45.0%
ACGCTTTGTGCTTCTGTTTC+TGG - chr1_4:57396470-57396489 None:intergenic 45.0%
CCTGCAATAACAACAAGCTC+GGG - chr1_4:57396526-57396545 None:intergenic 45.0%
CCAACTTCGGGCAATTTCTT+AGG - chr1_4:57396571-57396590 None:intergenic 45.0%
CCTAAGAAATTGCCCGAAGT+TGG + chr1_4:57396568-57396587 Msa0172370:CDS 45.0%
TGAAACCTTGTAGGCAGCAA+AGG + chr1_4:57396926-57396945 Msa0172370:intron 45.0%
AAACTCCTTTGCTGCCTACA+AGG - chr1_4:57396934-57396953 None:intergenic 45.0%
TGTTACAAGGAACATGCGGT+AGG + chr1_4:57397200-57397219 Msa0172370:three_prime_UTR 45.0%
! CACCCACGCTTGTTAGTTTG+CGG - chr1_4:57396243-57396262 None:intergenic 50.0%
!! TCTGGTTCTGGTTCTGGTTC+TGG - chr1_4:57396446-57396465 None:intergenic 50.0%
!! TCTGGTTCTGGTTCTGGTTC+TGG - chr1_4:57396446-57396465 None:intergenic 50.0%
TGCAACGCCTTCTTCGGATT+AGG + chr1_4:57396496-57396515 Msa0172370:CDS 50.0%
!! CCCGAGCTTGTTGTTATTGC+AGG + chr1_4:57396523-57396542 Msa0172370:CDS 50.0%
!!! GGAGTCGCTGCTCTTGTTTT+CGG + chr1_4:57396544-57396563 Msa0172370:CDS 50.0%
! CACCCACGCTTGTTAGTTTG+CGG - chr1_4:57396243-57396262 None:intergenic 50.0%
!! TCTGGTTCTGGTTCTGGTTC+TGG - chr1_4:57396446-57396465 None:intergenic 50.0%
!! TCTGGTTCTGGTTCTGGTTC+TGG - chr1_4:57396446-57396465 None:intergenic 50.0%
TGCAACGCCTTCTTCGGATT+AGG + chr1_4:57396496-57396515 Msa0172370:CDS 50.0%
!! CCCGAGCTTGTTGTTATTGC+AGG + chr1_4:57396523-57396542 Msa0172370:CDS 50.0%
!!! GGAGTCGCTGCTCTTGTTTT+CGG + chr1_4:57396544-57396563 Msa0172370:CDS 50.0%
GGGCACGCCTAATCCGAAGA+AGG - chr1_4:57396506-57396525 None:intergenic 60.0%
CCGATGCTGCGACCAACTTC+GGG - chr1_4:57396583-57396602 None:intergenic 60.0%
! CCCGAAGTTGGTCGCAGCAT+CGG + chr1_4:57396580-57396599 Msa0172370:CDS 60.0%
GCCGATGCTGCGACCAACTT+CGG - chr1_4:57396584-57396603 None:intergenic 60.0%
GGGCACGCCTAATCCGAAGA+AGG - chr1_4:57396506-57396525 None:intergenic 60.0%
CCGATGCTGCGACCAACTTC+GGG - chr1_4:57396583-57396602 None:intergenic 60.0%
! CCCGAAGTTGGTCGCAGCAT+CGG + chr1_4:57396580-57396599 Msa0172370:CDS 60.0%
GCCGATGCTGCGACCAACTT+CGG - chr1_4:57396584-57396603 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57396182 57397313 57396182 ID=Msa0172370;Name=Msa0172370
chr1_4 mRNA 57396182 57397313 57396182 ID=Msa0172370-mRNA-1;Parent=Msa0172370;Name=Msa0172370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=137|1|1|1|1|1|2|255|142
chr1_4 exon 57396182 57396627 57396182 ID=Msa0172370-mRNA-1:exon:17557;Parent=Msa0172370-mRNA-1
chr1_4 exon 57396939 57397313 57396939 ID=Msa0172370-mRNA-1:exon:17558;Parent=Msa0172370-mRNA-1
chr1_4 five_prime_UTR 57396182 57396318 57396182 ID=Msa0172370-mRNA-1:five_prime_utr;Parent=Msa0172370-mRNA-1
chr1_4 CDS 57396319 57396627 57396319 ID=Msa0172370-mRNA-1:cds;Parent=Msa0172370-mRNA-1
chr1_4 CDS 57396939 57397058 57396939 ID=Msa0172370-mRNA-1:cds;Parent=Msa0172370-mRNA-1
chr1_4 three_prime_UTR 57397059 57397313 57397059 ID=Msa0172370-mRNA-1:three_prime_utr;Parent=Msa0172370-mRNA-1
Gene Sequence

>Msa0172370

ATGGAGACAACACTTTCCCTTTCTTCTTCTTTAATTCGCCCTAGGCTTCCAATCTCTTCATCCTATTCCACCTTATCCTTCTTAGCTTCCAATTCCAATACTACCCCACTTCTCTTGAAGAAAGCCAGAACCAGAACCAGAACCAGAACCAGAAACAGAAGCACAAAGCGTTTTACTTGCAACGCCTTCTTCGGATTAGGCGTGCCCGAGCTTGTTGTTATTGCAGGAGTCGCTGCTCTTGTTTTCGGTCCTAAGAAATTGCCCGAAGTTGGTCGCAGCATCGGCAAAACTGTCAAAAGCTTCCAACAGGCAGCAAAGGAGTTTGAGACCGAGTTAAAAAAGGAACCTAATTCTACTGAAGAAATTTCTGTTGCGAATGACCAAGAAGATCAAGACAATAATGTTTCTAGTACAAAGGATAGTGTATGA

Protein sequence

>Msa0172370

METTLSLSSSLIRPRLPISSSYSTLSFLASNSNTTPLLLKKARTRTRTRTRNRSTKRFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQQAAKEFETELKKEPNSTEEISVANDQEDQDNNVSSTKDSV*