AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0084630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084630 MtrunA17_Chr1g0199181 96.078 204 4 3 1 200 2 205 1.63e-141 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084630 AT3G10405.1 62.252 151 57 0 53 203 59 209 4.96e-63 196

Find 60 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACGAATATGTTTCTTATC+TGG 0.245819 1_2:+64147393 Msa0084630:CDS
CTAGGATCCTCAACATTTAT+AGG 0.279112 1_2:-64145338 None:intergenic
GTTATTATTAGAGTTGAAAA+TGG 0.281416 1_2:-64144972 None:intergenic
ATTGATGTTCTACATAAATC+TGG 0.302714 1_2:+64148020 Msa0084630:three_prime_UTR
GATCATAATAAATGGATATA+TGG 0.314434 1_2:+64144729 None:intergenic
CCTACTGGACCTGGAAAGTA+TGG 0.323353 1_2:+64147956 Msa0084630:three_prime_UTR
TCCAATCTTCCATACTTTCC+AGG 0.337826 1_2:-64147965 None:intergenic
GAATCTTCAACTAACTCATT+AGG 0.348263 1_2:-64145305 None:intergenic
TTCAAATCCCAACAACAATA+AGG 0.349379 1_2:-64145627 None:intergenic
TTTGCAGGCCTTATTGTTGT+TGG 0.358466 1_2:+64145619 Msa0084630:intron
TTGCAGGCCTTATTGTTGTT+GGG 0.374699 1_2:+64145620 Msa0084630:intron
GTTGATGCTTTCCCTGAAAC+TGG 0.375894 1_2:+64147444 Msa0084630:CDS
ACTCTAATAATAACCTCAAC+TGG 0.380039 1_2:+64144981 Msa0084630:CDS
TCTTCTATCAACTCATATAG+TGG 0.394763 1_2:-64147658 None:intergenic
TGGAACATGAAGGAGGCATT+CGG 0.409372 1_2:-64144910 None:intergenic
GGAAGCAAAATGATGTCATT+TGG 0.414656 1_2:+64144845 Msa0084630:exon
TAGTGGTTTGTTAGCACTGT+TGG 0.421898 1_2:-64147641 None:intergenic
CTTACAGGTGGACCATATCT+AGG 0.439020 1_2:-64145356 None:intergenic
TTGAAAATGGAACAAGAAGA+AGG 0.451288 1_2:-64144959 None:intergenic
GGAACATGAAGGAGGCATTC+GGG 0.451596 1_2:-64144909 None:intergenic
ATTTATGAGCATATGCCTAC+TGG 0.466485 1_2:+64147941 Msa0084630:three_prime_UTR
AGTGGTTTGTTAGCACTGTT+GGG 0.472960 1_2:-64147640 None:intergenic
ACCTGGAAAGTATGGAAGAT+TGG 0.489010 1_2:+64147964 Msa0084630:three_prime_UTR
GAGCATATGCCTACTGGACC+TGG 0.490000 1_2:+64147947 Msa0084630:three_prime_UTR
AAACCTTCAGAGGATGCTCT+TGG 0.490604 1_2:-64145007 None:intergenic
CCAGATAAGAAACATATTCG+TGG 0.493847 1_2:-64147393 None:intergenic
CATTGAAACATGGGAAAACA+TGG 0.494004 1_2:-64144930 None:intergenic
ACAAGAGCCGCAAACGCAGC+TGG 0.494094 1_2:-64147616 None:intergenic
AAAATGATGTCATTTGGCCT+TGG 0.495524 1_2:+64144851 Msa0084630:exon
ACATGCTTACTCGTTCACTC+TGG 0.498624 1_2:+64146847 Msa0084630:CDS
ATTTGTTCCTATAAATGTTG+AGG 0.506384 1_2:+64145331 Msa0084630:CDS
ACTAAAACCAGCTGCGTTTG+CGG 0.509675 1_2:+64147609 Msa0084630:CDS
GAATCTCTACGAACTGCAGC+TGG 0.510882 1_2:+64144873 Msa0084630:CDS
AGTGAGCTCGTAGAATTCAC+TGG 0.515846 1_2:-64147821 None:intergenic
GCAAACGGATAAAAGAACTT+AGG 0.527966 1_2:+64144811 Msa0084630:five_prime_UTR
TTGATGTTCTACATAAATCT+GGG 0.539555 1_2:+64148021 Msa0084630:three_prime_UTR
AGAGAGTTTAGAAGAGGTCA+AGG 0.549225 1_2:+64146890 Msa0084630:CDS
TGAACGAGTAAGCATGTCCT+TGG 0.551105 1_2:-64146841 None:intergenic
CAAATAAGACAAACCTTCAG+AGG 0.558257 1_2:-64145017 None:intergenic
CATGCTTACTCGTTCACTCT+GGG 0.559754 1_2:+64146848 Msa0084630:CDS
AATGTTGAGGATCCTAGATA+TGG 0.565843 1_2:+64145344 Msa0084630:CDS
ATGCTCTTGGAGTCCAGTTG+AGG 0.571918 1_2:-64144994 None:intergenic
TGCAGTTCGTAGAGATTCCA+AGG 0.572362 1_2:-64144868 None:intergenic
AGGAGAAGACATTGAAACAT+GGG 0.575410 1_2:-64144939 None:intergenic
TGTTTCTTATCTGGTTTAAG+CGG 0.583734 1_2:+64147402 Msa0084630:CDS
AGAACTTAGGAAAGTTGCAG+AGG 0.588397 1_2:+64144824 Msa0084630:five_prime_UTR
ACTCCAAGAGCATCCTCTGA+AGG 0.589756 1_2:+64145004 Msa0084630:CDS
CCATACTTTCCAGGTCCAGT+AGG 0.590314 1_2:-64147956 None:intergenic
TGAGTTGATAGAAGAAATCA+CGG 0.591951 1_2:+64147666 Msa0084630:CDS
ACATGAGTAGAAGAAGCAAA+CGG 0.592780 1_2:+64144796 Msa0084630:five_prime_UTR
CTTATCTGGTTTAAGCGGAG+AGG 0.593073 1_2:+64147407 Msa0084630:CDS
AAGGAGAAGACATTGAAACA+TGG 0.593929 1_2:-64144940 None:intergenic
AACACAAGAGAGTTTAGAAG+AGG 0.600712 1_2:+64146884 Msa0084630:CDS
GAATTCTACGAGCTCACTCG+CGG 0.620240 1_2:+64147826 Msa0084630:CDS
GTGAGCTCGTAGAATTCACT+GGG 0.623563 1_2:-64147820 None:intergenic
GTTAGAGGGTGAATTCCTGA+AGG 0.640466 1_2:+64146212 Msa0084630:CDS
TGGGAAAACATGGAACATGA+AGG 0.642942 1_2:-64144920 None:intergenic
GAAAACATGGAACATGAAGG+AGG 0.688873 1_2:-64144917 None:intergenic
GTAGGTCATCTATTGTACCA+AGG 0.708999 1_2:+64146824 Msa0084630:intron
GAGTTGATAGAAGAAATCAC+GGG 0.709286 1_2:+64147667 Msa0084630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTAAATGATTTGATTA+AGG - chr1_2:64145766-64145785 None:intergenic 15.0%
!! ACTTAAATTCTTAATATTAC+GGG - chr1_2:64145828-64145847 None:intergenic 15.0%
!! CACTTAAATTCTTAATATTA+CGG - chr1_2:64145829-64145848 None:intergenic 15.0%
!!! TCTTGAAATTTTTTATACTA+AGG + chr1_2:64145948-64145967 Msa0084630:intron 15.0%
!!! ATTAGGATACATTAAAATTT+TGG - chr1_2:64146555-64146574 None:intergenic 15.0%
!! GTTATTATTAGAGTTGAAAA+TGG - chr1_2:64144975-64144994 None:intergenic 20.0%
!! TTAAACTATTTATCCAAACA+TGG + chr1_2:64145190-64145209 Msa0084630:intron 20.0%
!!! ATTTGAAATGTGATGTTTAT+CGG + chr1_2:64145398-64145417 Msa0084630:intron 20.0%
!! ATGTTCAATCAATCTAATTT+AGG + chr1_2:64145533-64145552 Msa0084630:intron 20.0%
!! ATCTTTATAAAGAAATGTTG+TGG + chr1_2:64145704-64145723 Msa0084630:intron 20.0%
!! AAAGATGTAAAATAATACTG+TGG - chr1_2:64146133-64146152 None:intergenic 20.0%
!! ATAATTAAACTCATTGATCT+TGG - chr1_2:64146287-64146306 None:intergenic 20.0%
!!! AAAATTTTGGTCACATATTA+GGG - chr1_2:64146542-64146561 None:intergenic 20.0%
!!! TAAAATTTTGGTCACATATT+AGG - chr1_2:64146543-64146562 None:intergenic 20.0%
!!! AATGTATCCTAATTTTCTTA+TGG + chr1_2:64146562-64146581 Msa0084630:intron 20.0%
!!! ATGTATCCTAATTTTCTTAT+GGG + chr1_2:64146563-64146582 Msa0084630:intron 20.0%
!!! ACAATCTAAAATATATCCTA+CGG - chr1_2:64146643-64146662 None:intergenic 20.0%
!!! TTTTCGATATATAAGAAAAG+AGG - chr1_2:64146764-64146783 None:intergenic 20.0%
!! AATGATGAATTCCTAATAAA+CGG - chr1_2:64147072-64147091 None:intergenic 20.0%
!!! GTTTTCTGATTTCAAATTTA+TGG + chr1_2:64147139-64147158 Msa0084630:intron 20.0%
!!! ATTGATTTTATCGATAAGTT+TGG + chr1_2:64147503-64147522 Msa0084630:intron 20.0%
!!! ATTTGAAATTTGTTTTATGC+AGG + chr1_2:64147586-64147605 Msa0084630:intron 20.0%
! ATTTGTTCCTATAAATGTTG+AGG + chr1_2:64145331-64145350 Msa0084630:CDS 25.0%
! AAAAACTAACCATAACTTAC+AGG - chr1_2:64145374-64145393 None:intergenic 25.0%
! AGGAAATTTCTACATGTAAA+AGG + chr1_2:64145968-64145987 Msa0084630:intron 25.0%
! GCTTATAGTAAATTGCAAAA+TGG + chr1_2:64146036-64146055 Msa0084630:intron 25.0%
! GTAAATTGCAAAATGGATAT+AGG + chr1_2:64146043-64146062 Msa0084630:intron 25.0%
! AGATAAAATACGAACATGAT+AGG - chr1_2:64146259-64146278 None:intergenic 25.0%
! AATGTAACATATTGCATTGT+AGG + chr1_2:64146806-64146825 Msa0084630:intron 25.0%
! ATTTGCATGAATTGTTAAGT+AGG + chr1_2:64147093-64147112 Msa0084630:intron 25.0%
! GGTCATGATTAATTGATTAT+AGG + chr1_2:64147117-64147136 Msa0084630:intron 25.0%
! TCAATGTTTATCACTATCTT+TGG + chr1_2:64147727-64147746 Msa0084630:intron 25.0%
! ATTGATGTTCTACATAAATC+TGG + chr1_2:64148020-64148039 Msa0084630:three_prime_UTR 25.0%
! TTGATGTTCTACATAAATCT+GGG + chr1_2:64148021-64148040 Msa0084630:three_prime_UTR 25.0%
TTGAAAATGGAACAAGAAGA+AGG - chr1_2:64144962-64144981 None:intergenic 30.0%
ACTCTAATAATAACCTCAAC+TGG + chr1_2:64144981-64145000 Msa0084630:CDS 30.0%
GAGTGTATCTATCTATCATA+TGG + chr1_2:64145039-64145058 Msa0084630:intron 30.0%
CTATCTATCATATGGAAACA+TGG + chr1_2:64145047-64145066 Msa0084630:intron 30.0%
ACTATTTATCCAAACATGGA+TGG + chr1_2:64145194-64145213 Msa0084630:intron 30.0%
!!! TGTTATTTTGCTTATCATGC+AGG + chr1_2:64145278-64145297 Msa0084630:intron 30.0%
GAATCTTCAACTAACTCATT+AGG - chr1_2:64145308-64145327 None:intergenic 30.0%
AACTCAAATTAGACTCTCAA+AGG - chr1_2:64145496-64145515 None:intergenic 30.0%
! TTTAGGACCAAAACTTAGAA+CGG + chr1_2:64145550-64145569 Msa0084630:intron 30.0%
!!! AGGAGTTTCTTTTATTTTGC+AGG + chr1_2:64145604-64145623 Msa0084630:intron 30.0%
TTCAAATCCCAACAACAATA+AGG - chr1_2:64145630-64145649 None:intergenic 30.0%
! TGAAGCAGATGAACATTTTA+AGG + chr1_2:64145646-64145665 Msa0084630:CDS 30.0%
ATTAACATCATCCATGCAAT+AGG + chr1_2:64145673-64145692 Msa0084630:intron 30.0%
GATTATCATATCCTATTGCA+TGG - chr1_2:64145687-64145706 None:intergenic 30.0%
TTTATGTACGTTGATCAGAA+CGG - chr1_2:64145857-64145876 None:intergenic 30.0%
ACAATAATCAGAGCAATGAT+TGG - chr1_2:64145888-64145907 None:intergenic 30.0%
AAACGATTGAACAACACATT+TGG - chr1_2:64146156-64146175 None:intergenic 30.0%
!! ACAGTTTTTGAAAGAGTTAG+AGG + chr1_2:64146197-64146216 Msa0084630:CDS 30.0%
!! CAGTTTTTGAAAGAGTTAGA+GGG + chr1_2:64146198-64146217 Msa0084630:CDS 30.0%
! ATAAGATGTTTGTTACCTTC+AGG - chr1_2:64146230-64146249 None:intergenic 30.0%
CATTTGTTTATTCAGACTGT+TGG - chr1_2:64146323-64146342 None:intergenic 30.0%
ACAATCTTTGGCTATTAAAG+TGG - chr1_2:64146351-64146370 None:intergenic 30.0%
TTGTCTGTATTGCATTATCT+AGG - chr1_2:64146421-64146440 None:intergenic 30.0%
TAGTCACCACAAATAGAAAA+AGG + chr1_2:64146511-64146530 Msa0084630:intron 30.0%
! GAAAAGCCTTTTTCTATTTG+TGG - chr1_2:64146520-64146539 None:intergenic 30.0%
! GCTTTTCCCATAAGAAAATT+AGG - chr1_2:64146572-64146591 None:intergenic 30.0%
AAGAGGAACACTATATAGTA+CGG - chr1_2:64146747-64146766 None:intergenic 30.0%
GATGAAAATAGTACATCACT+CGG - chr1_2:64146932-64146951 None:intergenic 30.0%
ACTACAAATTCATGAACAGA+TGG - chr1_2:64146972-64146991 None:intergenic 30.0%
! ATTTTTGACAGCCGTTTATT+AGG + chr1_2:64147058-64147077 Msa0084630:intron 30.0%
ATGGAGAATTATCATTTGTC+TGG + chr1_2:64147158-64147177 Msa0084630:intron 30.0%
ATTGCTACAAAGTTCTTGAT+TGG - chr1_2:64147215-64147234 None:intergenic 30.0%
CATATGTTACTAATGTTCCA+AGG + chr1_2:64147257-64147276 Msa0084630:intron 30.0%
! TGTTTCTTATCTGGTTTAAG+CGG + chr1_2:64147402-64147421 Msa0084630:CDS 30.0%
TCTTCTATCAACTCATATAG+TGG - chr1_2:64147661-64147680 None:intergenic 30.0%
!! TGAGTTGATAGAAGAAATCA+CGG + chr1_2:64147666-64147685 Msa0084630:CDS 30.0%
ACATGAGTAGAAGAAGCAAA+CGG + chr1_2:64144796-64144815 Msa0084630:five_prime_UTR 35.0%
GCAAACGGATAAAAGAACTT+AGG + chr1_2:64144811-64144830 Msa0084630:five_prime_UTR 35.0%
GGAAGCAAAATGATGTCATT+TGG + chr1_2:64144845-64144864 Msa0084630:exon 35.0%
! AAAATGATGTCATTTGGCCT+TGG + chr1_2:64144851-64144870 Msa0084630:exon 35.0%
CATTGAAACATGGGAAAACA+TGG - chr1_2:64144933-64144952 None:intergenic 35.0%
AGGAGAAGACATTGAAACAT+GGG - chr1_2:64144942-64144961 None:intergenic 35.0%
AAGGAGAAGACATTGAAACA+TGG - chr1_2:64144943-64144962 None:intergenic 35.0%
CAAATAAGACAAACCTTCAG+AGG - chr1_2:64145020-64145039 None:intergenic 35.0%
TTCAGCTTATTTCCATGAGT+TGG + chr1_2:64145094-64145113 Msa0084630:intron 35.0%
TTCATAAGTGATCCAACTCA+TGG - chr1_2:64145109-64145128 None:intergenic 35.0%
TACTCTCATTCCTTGAAAGT+TGG + chr1_2:64145235-64145254 Msa0084630:intron 35.0%
AATTTGAGCACCAACTTTCA+AGG - chr1_2:64145248-64145267 None:intergenic 35.0%
CTAGGATCCTCAACATTTAT+AGG - chr1_2:64145341-64145360 None:intergenic 35.0%
AATGTTGAGGATCCTAGATA+TGG + chr1_2:64145344-64145363 Msa0084630:CDS 35.0%
AACTAACCATAACTTACAGG+TGG - chr1_2:64145371-64145390 None:intergenic 35.0%
ACTTCTGCAGAAATCTCATA+TGG + chr1_2:64145449-64145468 Msa0084630:intron 35.0%
CTTCTGCAGAAATCTCATAT+GGG + chr1_2:64145450-64145469 Msa0084630:intron 35.0%
TTCTGCAGAAATCTCATATG+GGG + chr1_2:64145451-64145470 Msa0084630:intron 35.0%
ATTCATATGTAGCTAAGTGC+AGG + chr1_2:64145584-64145603 Msa0084630:intron 35.0%
AGGTTACAATTACAGCATGT+AGG + chr1_2:64145988-64146007 Msa0084630:intron 35.0%
TTGTGCATTGGAACAATCTT+TGG - chr1_2:64146363-64146382 None:intergenic 35.0%
AAGAAGTAGTTGTTGTGCAT+TGG - chr1_2:64146375-64146394 None:intergenic 35.0%
TTCTTATGGGAAAAGCTTCT+TGG + chr1_2:64146576-64146595 Msa0084630:intron 35.0%
AACACAAGAGAGTTTAGAAG+AGG + chr1_2:64146884-64146903 Msa0084630:CDS 35.0%
AATTCATGAACAGATGGAGA+GGG - chr1_2:64146966-64146985 None:intergenic 35.0%
AAATTCATGAACAGATGGAG+AGG - chr1_2:64146967-64146986 None:intergenic 35.0%
TGCATGAATTGTTAAGTAGG+TGG + chr1_2:64147096-64147115 Msa0084630:intron 35.0%
CCAGATAAGAAACATATTCG+TGG - chr1_2:64147396-64147415 None:intergenic 35.0%
CCACGAATATGTTTCTTATC+TGG + chr1_2:64147393-64147412 Msa0084630:CDS 35.0%
!!! GATTTTGGTTACCAGTTTCA+GGG - chr1_2:64147458-64147477 None:intergenic 35.0%
!!! AGATTTTGGTTACCAGTTTC+AGG - chr1_2:64147459-64147478 None:intergenic 35.0%
TGCATGAATGATAGATCTAC+TGG + chr1_2:64147537-64147556 Msa0084630:intron 35.0%
!! GAGTTGATAGAAGAAATCAC+GGG + chr1_2:64147667-64147686 Msa0084630:CDS 35.0%
ATTTATGAGCATATGCCTAC+TGG + chr1_2:64147941-64147960 Msa0084630:three_prime_UTR 35.0%
AGAACTTAGGAAAGTTGCAG+AGG + chr1_2:64144824-64144843 Msa0084630:five_prime_UTR 40.0%
GAAAACATGGAACATGAAGG+AGG - chr1_2:64144920-64144939 None:intergenic 40.0%
TGGGAAAACATGGAACATGA+AGG - chr1_2:64144923-64144942 None:intergenic 40.0%
TATGGTCCACCTGTAAGTTA+TGG + chr1_2:64145362-64145381 Msa0084630:intron 40.0%
TCTGCAGAAATCTCATATGG+GGG + chr1_2:64145452-64145471 Msa0084630:intron 40.0%
TAGACTCTCAAAGGTAAGTG+AGG - chr1_2:64145487-64145506 None:intergenic 40.0%
!! TCGACAACCGTTCTAAGTTT+TGG - chr1_2:64145560-64145579 None:intergenic 40.0%
!! TTTGCAGGCCTTATTGTTGT+TGG + chr1_2:64145619-64145638 Msa0084630:intron 40.0%
!! TTGCAGGCCTTATTGTTGTT+GGG + chr1_2:64145620-64145639 Msa0084630:intron 40.0%
CAAAAGAGAGATCGAGGAAA+AGG - chr1_2:64145802-64145821 None:intergenic 40.0%
ATGGGAAAAGCTTCTTGGTA+CGG + chr1_2:64146581-64146600 Msa0084630:intron 40.0%
! AACGAAGGTATATAAGCCGT+AGG + chr1_2:64146624-64146643 Msa0084630:intron 40.0%
AGTACGGAAGAACTACAGTA+CGG - chr1_2:64146731-64146750 None:intergenic 40.0%
GTAGGTCATCTATTGTACCA+AGG + chr1_2:64146824-64146843 Msa0084630:intron 40.0%
AGAGAGTTTAGAAGAGGTCA+AGG + chr1_2:64146890-64146909 Msa0084630:CDS 40.0%
ACGGCTGTCAAAAATCACAA+GGG - chr1_2:64147053-64147072 None:intergenic 40.0%
AACGGCTGTCAAAAATCACA+AGG - chr1_2:64147054-64147073 None:intergenic 40.0%
! ATGTTCCAAGGCCTTTTTAG+TGG + chr1_2:64147269-64147288 Msa0084630:intron 40.0%
!! TGTTCCAAGGCCTTTTTAGT+GGG + chr1_2:64147270-64147289 Msa0084630:intron 40.0%
!! CTTCAGCACTGAACAGATTT+TGG - chr1_2:64147473-64147492 None:intergenic 40.0%
!! AGTGGTTTGTTAGCACTGTT+GGG - chr1_2:64147643-64147662 None:intergenic 40.0%
!! TAGTGGTTTGTTAGCACTGT+TGG - chr1_2:64147644-64147663 None:intergenic 40.0%
! ACCTGGAAAGTATGGAAGAT+TGG + chr1_2:64147964-64147983 Msa0084630:three_prime_UTR 40.0%
TCCAATCTTCCATACTTTCC+AGG - chr1_2:64147968-64147987 None:intergenic 40.0%
TGCAGTTCGTAGAGATTCCA+AGG - chr1_2:64144871-64144890 None:intergenic 45.0%
!! TGGAACATGAAGGAGGCATT+CGG - chr1_2:64144913-64144932 None:intergenic 45.0%
AAACCTTCAGAGGATGCTCT+TGG - chr1_2:64145010-64145029 None:intergenic 45.0%
GCAACAAGACCATCCATGTT+TGG - chr1_2:64145206-64145225 None:intergenic 45.0%
CTTACAGGTGGACCATATCT+AGG - chr1_2:64145359-64145378 None:intergenic 45.0%
GGGATACAAAAGAGAGATCG+AGG - chr1_2:64145808-64145827 None:intergenic 45.0%
GTTAGAGGGTGAATTCCTGA+AGG + chr1_2:64146212-64146231 Msa0084630:CDS 45.0%
AAGCTTCTTGGTACGGCAAT+TGG + chr1_2:64146588-64146607 Msa0084630:intron 45.0%
GGAGCAACGAAAAACAACGA+AGG + chr1_2:64146609-64146628 Msa0084630:intron 45.0%
AAACACACAATGCATGCGGA+CGG - chr1_2:64146707-64146726 None:intergenic 45.0%
CGGTAAACACACAATGCATG+CGG - chr1_2:64146711-64146730 None:intergenic 45.0%
TGAACGAGTAAGCATGTCCT+TGG - chr1_2:64146844-64146863 None:intergenic 45.0%
ACATGCTTACTCGTTCACTC+TGG + chr1_2:64146847-64146866 Msa0084630:CDS 45.0%
CATGCTTACTCGTTCACTCT+GGG + chr1_2:64146848-64146867 Msa0084630:CDS 45.0%
AGCATTGCGACCCACTAAAA+AGG - chr1_2:64147283-64147302 None:intergenic 45.0%
! CTTATCTGGTTTAAGCGGAG+AGG + chr1_2:64147407-64147426 Msa0084630:CDS 45.0%
GTTGATGCTTTCCCTGAAAC+TGG + chr1_2:64147444-64147463 Msa0084630:CDS 45.0%
ACTAAAACCAGCTGCGTTTG+CGG + chr1_2:64147609-64147628 Msa0084630:CDS 45.0%
GGAGATCATGAGATGTTGGT+AGG + chr1_2:64147688-64147707 Msa0084630:intron 45.0%
! ATCTTTTATCGCGTGCAGAC+TGG + chr1_2:64147777-64147796 Msa0084630:intron 45.0%
GTGAGCTCGTAGAATTCACT+GGG - chr1_2:64147823-64147842 None:intergenic 45.0%
AGTGAGCTCGTAGAATTCAC+TGG - chr1_2:64147824-64147843 None:intergenic 45.0%
GAATCTCTACGAACTGCAGC+TGG + chr1_2:64144873-64144892 Msa0084630:CDS 50.0%
!! GGAACATGAAGGAGGCATTC+GGG - chr1_2:64144912-64144931 None:intergenic 50.0%
ATGCTCTTGGAGTCCAGTTG+AGG - chr1_2:64144997-64145016 None:intergenic 50.0%
!! ACTCCAAGAGCATCCTCTGA+AGG + chr1_2:64145004-64145023 Msa0084630:CDS 50.0%
CACGGGAGATCATGAGATGT+TGG + chr1_2:64147684-64147703 Msa0084630:intron 50.0%
GAATTCTACGAGCTCACTCG+CGG + chr1_2:64147826-64147845 Msa0084630:CDS 50.0%
CCATACTTTCCAGGTCCAGT+AGG - chr1_2:64147959-64147978 None:intergenic 50.0%
CCTACTGGACCTGGAAAGTA+TGG + chr1_2:64147956-64147975 Msa0084630:three_prime_UTR 50.0%
! CGAGGAAAAGGCACAGCTGA+AGG - chr1_2:64145790-64145809 None:intergenic 55.0%
GCGACCCACTAAAAAGGCCT+TGG - chr1_2:64147277-64147296 None:intergenic 55.0%
GAGCATATGCCTACTGGACC+TGG + chr1_2:64147947-64147966 Msa0084630:three_prime_UTR 55.0%
ACAAGAGCCGCAAACGCAGC+TGG - chr1_2:64147619-64147638 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 64144740 64148059 64144740 ID=Msa0084630;Name=Msa0084630
chr1_2 mRNA 64144740 64148059 64144740 ID=Msa0084630-mRNA-1;Parent=Msa0084630;Name=Msa0084630-mRNA-1;_AED=0.24;_eAED=0.24;_QI=114|0.85|0.87|1|1|1|8|183|225
chr1_2 exon 64144740 64145025 64144740 ID=Msa0084630-mRNA-1:exon:21546;Parent=Msa0084630-mRNA-1
chr1_2 exon 64145300 64145373 64145300 ID=Msa0084630-mRNA-1:exon:21547;Parent=Msa0084630-mRNA-1
chr1_2 exon 64145626 64145667 64145626 ID=Msa0084630-mRNA-1:exon:21548;Parent=Msa0084630-mRNA-1
chr1_2 exon 64146192 64146233 64146192 ID=Msa0084630-mRNA-1:exon:21549;Parent=Msa0084630-mRNA-1
chr1_2 exon 64146828 64146911 64146828 ID=Msa0084630-mRNA-1:exon:21550;Parent=Msa0084630-mRNA-1
chr1_2 exon 64147378 64147465 64147378 ID=Msa0084630-mRNA-1:exon:21551;Parent=Msa0084630-mRNA-1
chr1_2 exon 64147608 64147701 64147608 ID=Msa0084630-mRNA-1:exon:21552;Parent=Msa0084630-mRNA-1
chr1_2 exon 64147795 64148059 64147795 ID=Msa0084630-mRNA-1:exon:21553;Parent=Msa0084630-mRNA-1
chr1_2 five_prime_UTR 64144740 64144853 64144740 ID=Msa0084630-mRNA-1:five_prime_utr;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64144854 64145025 64144854 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64145300 64145373 64145300 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64145626 64145667 64145626 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64146192 64146233 64146192 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64146828 64146911 64146828 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64147378 64147465 64147378 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64147608 64147701 64147608 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 CDS 64147795 64147876 64147795 ID=Msa0084630-mRNA-1:cds;Parent=Msa0084630-mRNA-1
chr1_2 three_prime_UTR 64147877 64148059 64147877 ID=Msa0084630-mRNA-1:three_prime_utr;Parent=Msa0084630-mRNA-1
Gene Sequence

>Msa0084630

ATGATGTCATTTGGCCTTGGAATCTCTACGAACTGCAGCTGGTTGAGATGTCACGCCCGAATGCCTCCTTCATGTTCCATGTTTTCCCATGTTTCAATGTCTTCTCCTTCTTCTTGTTCCATTTTCAACTCTAATAATAACCTCAACTGGACTCCAAGAGCATCCTCTGAAGGACTTCCTAATGAGTTAGTTGAAGATTCAAAATTTGTTCCTATAAATGTTGAGGATCCTAGATATGGTCCACCTGCCTTATTGTTGTTGGGATTTGAAGCAGATGAACATTTTAAGATTCAACAGTTTTTGAAAGAGTTAGAGGGTGAATTCCTGAAGGTCATCTATTGTACCAAGGACATGCTTACTCGTTCACTCTGGGATGTAATGCATACAACACAAGAGAGTTTAGAAGAGGTCAAGATAGACAAGTCACTTCCACGAATATGTTTCTTATCTGGTTTAAGCGGAGAGGAGACGATGATGTTCGTTGATGCTTTCCCTGAAACTGGACTAAAACCAGCTGCGTTTGCGGCTCTTGTTCCCAACAGTGCTAACAAACCACTATATGAGTTGATAGAAGAAATCACGGGAGATCATGAGATACTGGAGAGCAGTTGTGATAAAATTCCCAGTGAATTCTACGAGCTCACTCGCGGAGCATATGCATACGCATTATCGATATGA

Protein sequence

>Msa0084630

MMSFGLGISTNCSWLRCHARMPPSCSMFSHVSMSSPSSCSIFNSNNNLNWTPRASSEGLPNELVEDSKFVPINVEDPRYGPPALLLLGFEADEHFKIQQFLKELEGEFLKVIYCTKDMLTRSLWDVMHTTQESLEEVKIDKSLPRICFLSGLSGEETMMFVDAFPETGLKPAAFAALVPNSANKPLYELIEEITGDHEILESSCDKIPSEFYELTRGAYAYALSI*