AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901140 MtrunA17_Chr6g0487251 89.655 174 5 4 1 174 1 161 3.34e-105 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901140 AT1G68590.1 84.444 90 14 0 85 174 76 165 1.99e-55 172
Msa0901140 AT1G68590.2 83.146 89 15 0 86 174 74 162 1.58e-54 170
Msa0901140 AT5G15760.1 70.588 102 30 0 72 173 82 183 1.91e-50 160

Find 50 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAAGCCCTTATTACTTT+TGG 0.215786 6_1:-97406190 Msa0901140:CDS
TTCCTTGGCCAAAAGTAATA+AGG 0.216981 6_1:+97406182 None:intergenic
AGAACAACAATAACATTAAA+AGG 0.282391 6_1:+97405969 None:intergenic
TTAGGTGAATAATTACTCTT+TGG 0.302007 6_1:-97405892 Msa0901140:three_prime_UTR
GACTCGTGTTGAAGTTCATT+TGG 0.338552 6_1:-97406271 Msa0901140:CDS
TTATCCTACATTTGAGCCTT+AGG 0.357487 6_1:+97406028 None:intergenic
TCCTTGGCCAAAAGTAATAA+GGG 0.369106 6_1:+97406183 None:intergenic
TCACTGAACTTGTTGTTTCA+CGG 0.380046 6_1:-97405854 Msa0901140:three_prime_UTR
CAAAAGTAATAAGGGCTTAG+AGG 0.406041 6_1:+97406191 None:intergenic
TCTTCCCAAGCATCTTTCCT+TGG 0.419837 6_1:+97406167 None:intergenic
CCACCGATATTATCAATTTG+TGG 0.425132 6_1:-97406076 Msa0901140:CDS
CTGCCACAAATTGATAATAT+CGG 0.432997 6_1:+97406073 None:intergenic
ATATATATGTTTAGAATGTC+TGG 0.437416 6_1:+97405702 None:intergenic
CGTGTTGAAGTTCATTTGGA+TGG 0.444833 6_1:-97406267 Msa0901140:CDS
TGAGGTGGAGGTTGAAGAGA+AGG 0.448959 6_1:+97407670 None:intergenic
ATGGAGAAGAACATCGGTAT+TGG 0.450928 6_1:-97406248 Msa0901140:CDS
ACGAGTCTTGGTTTGTCTGT+TGG 0.451057 6_1:+97406287 None:intergenic
TCAACCTCCACCTCAATCTC+AGG 0.453824 6_1:-97407662 Msa0901140:intron
ATGAACTTCAACACGAGTCT+TGG 0.461392 6_1:+97406275 None:intergenic
TTGGCCAAGGAAAGATGCTT+GGG 0.477445 6_1:-97406171 Msa0901140:CDS
TTCCATGGCCAGGTATCAAT+TGG 0.480682 6_1:+97406219 None:intergenic
TTTGGCCAAGGAAAGATGCT+TGG 0.483605 6_1:-97406172 Msa0901140:CDS
AGAACCTGAGATTGAGGTGG+AGG 0.486354 6_1:+97407658 None:intergenic
GGCGGTAACTTGTCCTCCTA+AGG 0.511225 6_1:-97406044 Msa0901140:exon
AGTTGCTAGAGAGTAAGCCT+TGG 0.524129 6_1:-97406136 Msa0901140:CDS
TTTGATGGGTCGAATTGAAA+AGG 0.525559 6_1:+97407792 None:intergenic
TGGAGGTTGAAGAGAAGGAG+AGG 0.528382 6_1:+97407675 None:intergenic
AGAGGAATGGTTCCATGGCC+AGG 0.528465 6_1:+97406209 None:intergenic
GTAATAAGGGCTTAGAGGAA+TGG 0.544994 6_1:+97406196 None:intergenic
GAGTTATCGTGTTCTAGATA+AGG 0.545660 6_1:+97407988 None:intergenic
GTTGTTGTGATGTAGAAGCT+AGG 0.555418 6_1:-97406323 Msa0901140:intron
TCCTACATTTGAGCCTTAGG+AGG 0.560591 6_1:+97406031 None:intergenic
AGAGAGAGAACCTGAGATTG+AGG 0.570056 6_1:+97407652 None:intergenic
GGCTTAGAGGAATGGTTCCA+TGG 0.575688 6_1:+97406204 None:intergenic
GGACTTGACCAATTGATACC+TGG 0.579475 6_1:-97406227 Msa0901140:CDS
GACCAATTGATACCTGGCCA+TGG 0.585251 6_1:-97406221 Msa0901140:CDS
TCCTCCTAAGGCTCAAATGT+AGG 0.585363 6_1:-97406032 Msa0901140:exon
AGATGCTTGGGAAGAACTCA+AGG 0.585963 6_1:-97406159 Msa0901140:CDS
GAGAGAACCTGAGATTGAGG+TGG 0.621757 6_1:+97407655 None:intergenic
TAGAACACGATAACTCACTC+TGG 0.621932 6_1:-97407981 Msa0901140:five_prime_UTR
ATTATTCACCTAAAAGAATG+TGG 0.622426 6_1:+97405902 None:intergenic
TTATCGTGTTCTAGATAAGG+AGG 0.625327 6_1:+97407991 None:intergenic
CCACAAATTGATAATATCGG+TGG 0.628396 6_1:+97406076 None:intergenic
ATCAATTTGTGGCAGCAGAG+CGG 0.648603 6_1:-97406065 Msa0901140:CDS
ATTTGGATGGAGAAGAACAT+CGG 0.651745 6_1:-97406254 Msa0901140:CDS
AATTTGTGGCAGCAGAGCGG+CGG 0.660943 6_1:-97406062 Msa0901140:CDS
TGCTAAATAAGACTATTACA+CGG 0.674644 6_1:-97405674 Msa0901140:three_prime_UTR
CAAGAGCAGAAACAGTAAAG+CGG 0.684597 6_1:+97407728 None:intergenic
TCACATTTCACATACAAACA+CGG 0.697464 6_1:+97405817 None:intergenic
TGTGATGTAGAAGCTAGGAG+TGG 0.712045 6_1:-97406318 Msa0901140:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATAAAACAGTTTT+AGG - chr6_1:97406463-97406482 Msa0901140:intron 10.0%
!!! ATTAATATAAAACAGTTTTA+GGG - chr6_1:97406464-97406483 Msa0901140:intron 10.0%
!!! TATTAATATAAAACAGTTTT+AGG - chr6_1:97406463-97406482 Msa0901140:intron 10.0%
!!! ATTAATATAAAACAGTTTTA+GGG - chr6_1:97406464-97406483 Msa0901140:intron 10.0%
!! TAAAATGATTTATGTAAAAG+TGG - chr6_1:97406219-97406238 Msa0901140:CDS 15.0%
!! AAAATGATTTATGTAAAAGT+GGG - chr6_1:97406220-97406239 Msa0901140:CDS 15.0%
!!! CATTTTTGTTTTATAATTGT+TGG - chr6_1:97406555-97406574 Msa0901140:intron 15.0%
!! TTGTAAAAAATAATCATGTT+TGG - chr6_1:97406887-97406906 Msa0901140:intron 15.0%
!! TAAAAAGCTTATATTATGTT+TGG + chr6_1:97407274-97407293 None:intergenic 15.0%
!! TAAAATGATTTATGTAAAAG+TGG - chr6_1:97406219-97406238 Msa0901140:CDS 15.0%
!! AAAATGATTTATGTAAAAGT+GGG - chr6_1:97406220-97406239 Msa0901140:CDS 15.0%
!!! CATTTTTGTTTTATAATTGT+TGG - chr6_1:97406555-97406574 Msa0901140:intron 15.0%
!! TTGTAAAAAATAATCATGTT+TGG - chr6_1:97406887-97406906 Msa0901140:intron 15.0%
!! TAAAAAGCTTATATTATGTT+TGG + chr6_1:97407274-97407293 None:intergenic 15.0%
!!! TAATTCTAAGTTTGTTTCAA+AGG - chr6_1:97406037-97406056 Msa0901140:exon 20.0%
!!! AATTCTAAGTTTGTTTCAAA+GGG - chr6_1:97406038-97406057 Msa0901140:exon 20.0%
!!! TATGATTAAAATTGAGTTGA+AGG - chr6_1:97406196-97406215 Msa0901140:CDS 20.0%
!! ACAAAAATGCTTAAATTACA+GGG + chr6_1:97406444-97406463 None:intergenic 20.0%
!! TACAAAAATGCTTAAATTAC+AGG + chr6_1:97406445-97406464 None:intergenic 20.0%
!! TTCTTAATGAAACTACAAAA+GGG + chr6_1:97406491-97406510 None:intergenic 20.0%
!! TTTCTTAATGAAACTACAAA+AGG + chr6_1:97406492-97406511 None:intergenic 20.0%
!!! GTAATAGAAATGATTTTGAA+TGG - chr6_1:97406917-97406936 Msa0901140:intron 20.0%
!!! TTAAATCAATTTTATGTGTC+TGG - chr6_1:97407129-97407148 Msa0901140:intron 20.0%
!! AGAACAACAATAACATTAAA+AGG + chr6_1:97407689-97407708 None:intergenic 20.0%
!!! ATATATATGTTTAGAATGTC+TGG + chr6_1:97407956-97407975 None:intergenic 20.0%
!!! TAATTCTAAGTTTGTTTCAA+AGG - chr6_1:97406037-97406056 Msa0901140:exon 20.0%
!!! AATTCTAAGTTTGTTTCAAA+GGG - chr6_1:97406038-97406057 Msa0901140:exon 20.0%
!!! TATGATTAAAATTGAGTTGA+AGG - chr6_1:97406196-97406215 Msa0901140:CDS 20.0%
!! ACAAAAATGCTTAAATTACA+GGG + chr6_1:97406444-97406463 None:intergenic 20.0%
!! TACAAAAATGCTTAAATTAC+AGG + chr6_1:97406445-97406464 None:intergenic 20.0%
!! TTCTTAATGAAACTACAAAA+GGG + chr6_1:97406491-97406510 None:intergenic 20.0%
!! TTTCTTAATGAAACTACAAA+AGG + chr6_1:97406492-97406511 None:intergenic 20.0%
!!! GTAATAGAAATGATTTTGAA+TGG - chr6_1:97406917-97406936 Msa0901140:intron 20.0%
!!! TTAAATCAATTTTATGTGTC+TGG - chr6_1:97407129-97407148 Msa0901140:intron 20.0%
!! AGAACAACAATAACATTAAA+AGG + chr6_1:97407689-97407708 None:intergenic 20.0%
!!! ATATATATGTTTAGAATGTC+TGG + chr6_1:97407956-97407975 None:intergenic 20.0%
!! ATTCTAAGTTTGTTTCAAAG+GGG - chr6_1:97406039-97406058 Msa0901140:exon 25.0%
! TTTCAGTGTGAATGTTTAAA+AGG - chr6_1:97406108-97406127 Msa0901140:CDS 25.0%
! TTCAGTGTGAATGTTTAAAA+GGG - chr6_1:97406109-97406128 Msa0901140:CDS 25.0%
!!! TTGAAATTTTGGTGTATGTT+TGG - chr6_1:97406135-97406154 Msa0901140:CDS 25.0%
! AGTAGAATCAATTCTATTAG+AGG - chr6_1:97406306-97406325 Msa0901140:CDS 25.0%
! TCTTAATGAAACTACAAAAG+GGG + chr6_1:97406490-97406509 None:intergenic 25.0%
!! TTTGACAAGTGTTGTTATTA+TGG - chr6_1:97406781-97406800 Msa0901140:intron 25.0%
! ACTAATACACAAGTTTGAAA+GGG - chr6_1:97406815-97406834 Msa0901140:intron 25.0%
!! TATCCTTAAGTTTTACCTAA+AGG + chr6_1:97406843-97406862 None:intergenic 25.0%
!!! GTGAATTATTGGTTTATGTT+TGG - chr6_1:97406968-97406987 Msa0901140:intron 25.0%
! TTTGAGTATAAAATCACCTT+TGG - chr6_1:97407024-97407043 Msa0901140:intron 25.0%
! TTGATTTAAACATGTTTGAG+TGG + chr6_1:97407118-97407137 None:intergenic 25.0%
!! AACTTTTCTAATTGTTACGA+TGG - chr6_1:97407310-97407329 Msa0901140:intron 25.0%
! ATTATTCACCTAAAAGAATG+TGG + chr6_1:97407756-97407775 None:intergenic 25.0%
! TTAGGTGAATAATTACTCTT+TGG - chr6_1:97407763-97407782 Msa0901140:CDS 25.0%
! TGCTAAATAAGACTATTACA+CGG - chr6_1:97407981-97408000 Msa0901140:five_prime_UTR 25.0%
!! ATTCTAAGTTTGTTTCAAAG+GGG - chr6_1:97406039-97406058 Msa0901140:exon 25.0%
! TTTCAGTGTGAATGTTTAAA+AGG - chr6_1:97406108-97406127 Msa0901140:CDS 25.0%
! TTCAGTGTGAATGTTTAAAA+GGG - chr6_1:97406109-97406128 Msa0901140:CDS 25.0%
!!! TTGAAATTTTGGTGTATGTT+TGG - chr6_1:97406135-97406154 Msa0901140:CDS 25.0%
! AGTAGAATCAATTCTATTAG+AGG - chr6_1:97406306-97406325 Msa0901140:CDS 25.0%
! TCTTAATGAAACTACAAAAG+GGG + chr6_1:97406490-97406509 None:intergenic 25.0%
!! TTTGACAAGTGTTGTTATTA+TGG - chr6_1:97406781-97406800 Msa0901140:intron 25.0%
! ACTAATACACAAGTTTGAAA+GGG - chr6_1:97406815-97406834 Msa0901140:intron 25.0%
!! TATCCTTAAGTTTTACCTAA+AGG + chr6_1:97406843-97406862 None:intergenic 25.0%
!!! GTGAATTATTGGTTTATGTT+TGG - chr6_1:97406968-97406987 Msa0901140:intron 25.0%
! TTTGAGTATAAAATCACCTT+TGG - chr6_1:97407024-97407043 Msa0901140:intron 25.0%
! TTGATTTAAACATGTTTGAG+TGG + chr6_1:97407118-97407137 None:intergenic 25.0%
!! AACTTTTCTAATTGTTACGA+TGG - chr6_1:97407310-97407329 Msa0901140:intron 25.0%
! ATTATTCACCTAAAAGAATG+TGG + chr6_1:97407756-97407775 None:intergenic 25.0%
! TTAGGTGAATAATTACTCTT+TGG - chr6_1:97407763-97407782 Msa0901140:CDS 25.0%
! TGCTAAATAAGACTATTACA+CGG - chr6_1:97407981-97408000 Msa0901140:five_prime_UTR 25.0%
!!! AAAAGAGGTTTTGAAGTTGT+TGG + chr6_1:97405835-97405854 None:intergenic 30.0%
GAAAAGGTTGTTGTAAAAAG+AGG + chr6_1:97405850-97405869 None:intergenic 30.0%
!!! TGTACGTTGTTTGTTTTGAT+GGG + chr6_1:97405880-97405899 None:intergenic 30.0%
!!! ATGTACGTTGTTTGTTTTGA+TGG + chr6_1:97405881-97405900 None:intergenic 30.0%
TCAGTGTGAATGTTTAAAAG+GGG - chr6_1:97406110-97406129 Msa0901140:CDS 30.0%
!!! TAAAAGGGGTGTTGAAATTT+TGG - chr6_1:97406124-97406143 Msa0901140:CDS 30.0%
! GTCACCTATAGAATCAATTT+TGG - chr6_1:97406339-97406358 Msa0901140:intron 30.0%
CAATATCATATGTGTAAGTC+TGG + chr6_1:97406382-97406401 None:intergenic 30.0%
TGTTTGACCTTCAAAACATT+TGG - chr6_1:97406589-97406608 Msa0901140:intron 30.0%
!! AAAACATTTGGTGTCGAATA+AGG - chr6_1:97406601-97406620 Msa0901140:intron 30.0%
AAGTGTAGAAGATTAGAAGT+AGG - chr6_1:97406662-97406681 Msa0901140:intron 30.0%
GACTAATACACAAGTTTGAA+AGG - chr6_1:97406814-97406833 Msa0901140:intron 30.0%
GTACCTTTAGGTAAAACTTA+AGG - chr6_1:97406837-97406856 Msa0901140:intron 30.0%
!! AATAATCATGTTTGGTTCTG+CGG - chr6_1:97406895-97406914 Msa0901140:intron 30.0%
! GTGAGTTGAATGTGAATTAT+TGG - chr6_1:97406957-97406976 Msa0901140:intron 30.0%
!! CTCTAGAATTGATTCTAACT+TGG + chr6_1:97407073-97407092 None:intergenic 30.0%
!!! TTCATGTGTGTTTGGTTTTA+TGG + chr6_1:97407176-97407195 None:intergenic 30.0%
CATATCAACTGACATAGAAA+TGG + chr6_1:97407236-97407255 None:intergenic 30.0%
!! ATTTGCTTTTGTGATATCCA+AGG + chr6_1:97407539-97407558 None:intergenic 30.0%
! CTGCCACAAATTGATAATAT+CGG + chr6_1:97407585-97407604 None:intergenic 30.0%
TCACATTTCACATACAAACA+CGG + chr6_1:97407841-97407860 None:intergenic 30.0%
!!! AAAAGAGGTTTTGAAGTTGT+TGG + chr6_1:97405835-97405854 None:intergenic 30.0%
GAAAAGGTTGTTGTAAAAAG+AGG + chr6_1:97405850-97405869 None:intergenic 30.0%
!!! TGTACGTTGTTTGTTTTGAT+GGG + chr6_1:97405880-97405899 None:intergenic 30.0%
!!! ATGTACGTTGTTTGTTTTGA+TGG + chr6_1:97405881-97405900 None:intergenic 30.0%
TCAGTGTGAATGTTTAAAAG+GGG - chr6_1:97406110-97406129 Msa0901140:CDS 30.0%
!!! TAAAAGGGGTGTTGAAATTT+TGG - chr6_1:97406124-97406143 Msa0901140:CDS 30.0%
! GTCACCTATAGAATCAATTT+TGG - chr6_1:97406339-97406358 Msa0901140:intron 30.0%
CAATATCATATGTGTAAGTC+TGG + chr6_1:97406382-97406401 None:intergenic 30.0%
TGTTTGACCTTCAAAACATT+TGG - chr6_1:97406589-97406608 Msa0901140:intron 30.0%
!! AAAACATTTGGTGTCGAATA+AGG - chr6_1:97406601-97406620 Msa0901140:intron 30.0%
AAGTGTAGAAGATTAGAAGT+AGG - chr6_1:97406662-97406681 Msa0901140:intron 30.0%
GACTAATACACAAGTTTGAA+AGG - chr6_1:97406814-97406833 Msa0901140:intron 30.0%
GTACCTTTAGGTAAAACTTA+AGG - chr6_1:97406837-97406856 Msa0901140:intron 30.0%
!! AATAATCATGTTTGGTTCTG+CGG - chr6_1:97406895-97406914 Msa0901140:intron 30.0%
! GTGAGTTGAATGTGAATTAT+TGG - chr6_1:97406957-97406976 Msa0901140:intron 30.0%
!! CTCTAGAATTGATTCTAACT+TGG + chr6_1:97407073-97407092 None:intergenic 30.0%
!!! TTCATGTGTGTTTGGTTTTA+TGG + chr6_1:97407176-97407195 None:intergenic 30.0%
CATATCAACTGACATAGAAA+TGG + chr6_1:97407236-97407255 None:intergenic 30.0%
!! ATTTGCTTTTGTGATATCCA+AGG + chr6_1:97407539-97407558 None:intergenic 30.0%
! CTGCCACAAATTGATAATAT+CGG + chr6_1:97407585-97407604 None:intergenic 30.0%
TCACATTTCACATACAAACA+CGG + chr6_1:97407841-97407860 None:intergenic 30.0%
! TTATCGTGTTCTAGATAAGG+AGG + chr6_1:97405667-97405686 None:intergenic 35.0%
! GAGTTATCGTGTTCTAGATA+AGG + chr6_1:97405670-97405689 None:intergenic 35.0%
! TTTGATGGGTCGAATTGAAA+AGG + chr6_1:97405866-97405885 None:intergenic 35.0%
!! TTGGTGTATGTTTGGTTCTA+CGG - chr6_1:97406143-97406162 Msa0901140:CDS 35.0%
GATTCTATAGGTGACATGTT+TGG + chr6_1:97406334-97406353 None:intergenic 35.0%
! GGAGCCAAAATTGATTCTAT+AGG + chr6_1:97406346-97406365 None:intergenic 35.0%
!! TGTAAGTCTGGTTTCACTTT+TGG + chr6_1:97406370-97406389 None:intergenic 35.0%
!! TTCGACACCAAATGTTTTGA+AGG + chr6_1:97406599-97406618 None:intergenic 35.0%
AACACATATTGTGTCGCATA+CGG - chr6_1:97406700-97406719 Msa0901140:intron 35.0%
!! AAGTTTGAAAGGGTACCTTT+AGG - chr6_1:97406825-97406844 Msa0901140:intron 35.0%
TTTGTAGCATTTGACTCCAA+AGG + chr6_1:97407043-97407062 None:intergenic 35.0%
! AATTGATTCTAACTTGGAGC+TGG + chr6_1:97407067-97407086 None:intergenic 35.0%
!!! GTGTGTTTGGTTTTATGGTA+GGG + chr6_1:97407171-97407190 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTATGGT+AGG + chr6_1:97407172-97407191 None:intergenic 35.0%
ACATAGGTTTCATGTGTGTT+TGG + chr6_1:97407184-97407203 None:intergenic 35.0%
ACACACATGAAACCTATGTT+TGG - chr6_1:97407185-97407204 Msa0901140:intron 35.0%
ATTTGGATGGAGAAGAACAT+CGG - chr6_1:97407401-97407420 Msa0901140:intron 35.0%
CAAAAGTAATAAGGGCTTAG+AGG + chr6_1:97407467-97407486 None:intergenic 35.0%
! CTCTAAGCCCTTATTACTTT+TGG - chr6_1:97407465-97407484 Msa0901140:intron 35.0%
TCCTTGGCCAAAAGTAATAA+GGG + chr6_1:97407475-97407494 None:intergenic 35.0%
TTCCTTGGCCAAAAGTAATA+AGG + chr6_1:97407476-97407495 None:intergenic 35.0%
! CCACAAATTGATAATATCGG+TGG + chr6_1:97407582-97407601 None:intergenic 35.0%
CCACCGATATTATCAATTTG+TGG - chr6_1:97407579-97407598 Msa0901140:intron 35.0%
TTATCCTACATTTGAGCCTT+AGG + chr6_1:97407630-97407649 None:intergenic 35.0%
!!! GCGATGTTTTTTCTGTCAAT+AGG - chr6_1:97407656-97407675 Msa0901140:intron 35.0%
!! TCACTGAACTTGTTGTTTCA+CGG - chr6_1:97407801-97407820 Msa0901140:CDS 35.0%
! TTATCGTGTTCTAGATAAGG+AGG + chr6_1:97405667-97405686 None:intergenic 35.0%
! GAGTTATCGTGTTCTAGATA+AGG + chr6_1:97405670-97405689 None:intergenic 35.0%
! TTTGATGGGTCGAATTGAAA+AGG + chr6_1:97405866-97405885 None:intergenic 35.0%
!! TTGGTGTATGTTTGGTTCTA+CGG - chr6_1:97406143-97406162 Msa0901140:CDS 35.0%
GATTCTATAGGTGACATGTT+TGG + chr6_1:97406334-97406353 None:intergenic 35.0%
! GGAGCCAAAATTGATTCTAT+AGG + chr6_1:97406346-97406365 None:intergenic 35.0%
!! TGTAAGTCTGGTTTCACTTT+TGG + chr6_1:97406370-97406389 None:intergenic 35.0%
!! TTCGACACCAAATGTTTTGA+AGG + chr6_1:97406599-97406618 None:intergenic 35.0%
AACACATATTGTGTCGCATA+CGG - chr6_1:97406700-97406719 Msa0901140:intron 35.0%
!! AAGTTTGAAAGGGTACCTTT+AGG - chr6_1:97406825-97406844 Msa0901140:intron 35.0%
TTTGTAGCATTTGACTCCAA+AGG + chr6_1:97407043-97407062 None:intergenic 35.0%
! AATTGATTCTAACTTGGAGC+TGG + chr6_1:97407067-97407086 None:intergenic 35.0%
!!! GTGTGTTTGGTTTTATGGTA+GGG + chr6_1:97407171-97407190 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTATGGT+AGG + chr6_1:97407172-97407191 None:intergenic 35.0%
ACATAGGTTTCATGTGTGTT+TGG + chr6_1:97407184-97407203 None:intergenic 35.0%
ACACACATGAAACCTATGTT+TGG - chr6_1:97407185-97407204 Msa0901140:intron 35.0%
ATTTGGATGGAGAAGAACAT+CGG - chr6_1:97407401-97407420 Msa0901140:intron 35.0%
CAAAAGTAATAAGGGCTTAG+AGG + chr6_1:97407467-97407486 None:intergenic 35.0%
! CTCTAAGCCCTTATTACTTT+TGG - chr6_1:97407465-97407484 Msa0901140:intron 35.0%
TCCTTGGCCAAAAGTAATAA+GGG + chr6_1:97407475-97407494 None:intergenic 35.0%
TTCCTTGGCCAAAAGTAATA+AGG + chr6_1:97407476-97407495 None:intergenic 35.0%
! CCACAAATTGATAATATCGG+TGG + chr6_1:97407582-97407601 None:intergenic 35.0%
CCACCGATATTATCAATTTG+TGG - chr6_1:97407579-97407598 Msa0901140:intron 35.0%
TTATCCTACATTTGAGCCTT+AGG + chr6_1:97407630-97407649 None:intergenic 35.0%
!!! GCGATGTTTTTTCTGTCAAT+AGG - chr6_1:97407656-97407675 Msa0901140:intron 35.0%
!! TCACTGAACTTGTTGTTTCA+CGG - chr6_1:97407801-97407820 Msa0901140:CDS 35.0%
TAGAACACGATAACTCACTC+TGG - chr6_1:97405674-97405693 Msa0901140:three_prime_UTR 40.0%
CAAGAGCAGAAACAGTAAAG+CGG + chr6_1:97405930-97405949 None:intergenic 40.0%
!! AAGTCTGGTTTCACTTTTGG+AGG + chr6_1:97406367-97406386 None:intergenic 40.0%
TAGCTTCTGCATCCAAACAT+AGG + chr6_1:97407200-97407219 None:intergenic 40.0%
GTTGTTGTGATGTAGAAGCT+AGG - chr6_1:97407332-97407351 Msa0901140:intron 40.0%
ATGAACTTCAACACGAGTCT+TGG + chr6_1:97407383-97407402 None:intergenic 40.0%
GACTCGTGTTGAAGTTCATT+TGG - chr6_1:97407384-97407403 Msa0901140:intron 40.0%
CGTGTTGAAGTTCATTTGGA+TGG - chr6_1:97407388-97407407 Msa0901140:intron 40.0%
ATGGAGAAGAACATCGGTAT+TGG - chr6_1:97407407-97407426 Msa0901140:intron 40.0%
GTAATAAGGGCTTAGAGGAA+TGG + chr6_1:97407462-97407481 None:intergenic 40.0%
! GACAAGTGCCACATTCTTTT+AGG - chr6_1:97407745-97407764 Msa0901140:CDS 40.0%
TAGAACACGATAACTCACTC+TGG - chr6_1:97405674-97405693 Msa0901140:three_prime_UTR 40.0%
CAAGAGCAGAAACAGTAAAG+CGG + chr6_1:97405930-97405949 None:intergenic 40.0%
!! AAGTCTGGTTTCACTTTTGG+AGG + chr6_1:97406367-97406386 None:intergenic 40.0%
TAGCTTCTGCATCCAAACAT+AGG + chr6_1:97407200-97407219 None:intergenic 40.0%
GTTGTTGTGATGTAGAAGCT+AGG - chr6_1:97407332-97407351 Msa0901140:intron 40.0%
ATGAACTTCAACACGAGTCT+TGG + chr6_1:97407383-97407402 None:intergenic 40.0%
GACTCGTGTTGAAGTTCATT+TGG - chr6_1:97407384-97407403 Msa0901140:intron 40.0%
CGTGTTGAAGTTCATTTGGA+TGG - chr6_1:97407388-97407407 Msa0901140:intron 40.0%
ATGGAGAAGAACATCGGTAT+TGG - chr6_1:97407407-97407426 Msa0901140:intron 40.0%
GTAATAAGGGCTTAGAGGAA+TGG + chr6_1:97407462-97407481 None:intergenic 40.0%
! GACAAGTGCCACATTCTTTT+AGG - chr6_1:97407745-97407764 Msa0901140:CDS 40.0%
AGAGAGAGAACCTGAGATTG+AGG + chr6_1:97406006-97406025 None:intergenic 45.0%
TGTGATGTAGAAGCTAGGAG+TGG - chr6_1:97407337-97407356 Msa0901140:intron 45.0%
!! ACGAGTCTTGGTTTGTCTGT+TGG + chr6_1:97407371-97407390 None:intergenic 45.0%
GGACTTGACCAATTGATACC+TGG - chr6_1:97407428-97407447 Msa0901140:intron 45.0%
TTCCATGGCCAGGTATCAAT+TGG + chr6_1:97407439-97407458 None:intergenic 45.0%
!! GCCCTTATTACTTTTGGCCA+AGG - chr6_1:97407471-97407490 Msa0901140:intron 45.0%
TTTGGCCAAGGAAAGATGCT+TGG - chr6_1:97407483-97407502 Msa0901140:intron 45.0%
TTGGCCAAGGAAAGATGCTT+GGG - chr6_1:97407484-97407503 Msa0901140:intron 45.0%
TCTTCCCAAGCATCTTTCCT+TGG + chr6_1:97407491-97407510 None:intergenic 45.0%
AGATGCTTGGGAAGAACTCA+AGG - chr6_1:97407496-97407515 Msa0901140:intron 45.0%
AGTTGCTAGAGAGTAAGCCT+TGG - chr6_1:97407519-97407538 Msa0901140:intron 45.0%
ATCAATTTGTGGCAGCAGAG+CGG - chr6_1:97407590-97407609 Msa0901140:intron 45.0%
TCCTCCTAAGGCTCAAATGT+AGG - chr6_1:97407623-97407642 Msa0901140:intron 45.0%
TCCTACATTTGAGCCTTAGG+AGG + chr6_1:97407627-97407646 None:intergenic 45.0%
AGAGAGAGAACCTGAGATTG+AGG + chr6_1:97406006-97406025 None:intergenic 45.0%
TGTGATGTAGAAGCTAGGAG+TGG - chr6_1:97407337-97407356 Msa0901140:intron 45.0%
!! ACGAGTCTTGGTTTGTCTGT+TGG + chr6_1:97407371-97407390 None:intergenic 45.0%
GGACTTGACCAATTGATACC+TGG - chr6_1:97407428-97407447 Msa0901140:intron 45.0%
TTCCATGGCCAGGTATCAAT+TGG + chr6_1:97407439-97407458 None:intergenic 45.0%
!! GCCCTTATTACTTTTGGCCA+AGG - chr6_1:97407471-97407490 Msa0901140:intron 45.0%
TTTGGCCAAGGAAAGATGCT+TGG - chr6_1:97407483-97407502 Msa0901140:intron 45.0%
TTGGCCAAGGAAAGATGCTT+GGG - chr6_1:97407484-97407503 Msa0901140:intron 45.0%
TCTTCCCAAGCATCTTTCCT+TGG + chr6_1:97407491-97407510 None:intergenic 45.0%
AGATGCTTGGGAAGAACTCA+AGG - chr6_1:97407496-97407515 Msa0901140:intron 45.0%
AGTTGCTAGAGAGTAAGCCT+TGG - chr6_1:97407519-97407538 Msa0901140:intron 45.0%
ATCAATTTGTGGCAGCAGAG+CGG - chr6_1:97407590-97407609 Msa0901140:intron 45.0%
TCCTCCTAAGGCTCAAATGT+AGG - chr6_1:97407623-97407642 Msa0901140:intron 45.0%
TCCTACATTTGAGCCTTAGG+AGG + chr6_1:97407627-97407646 None:intergenic 45.0%
TGGAGGTTGAAGAGAAGGAG+AGG + chr6_1:97405983-97406002 None:intergenic 50.0%
TGAGGTGGAGGTTGAAGAGA+AGG + chr6_1:97405988-97406007 None:intergenic 50.0%
TCAACCTCCACCTCAATCTC+AGG - chr6_1:97405993-97406012 Msa0901140:three_prime_UTR 50.0%
AGAACCTGAGATTGAGGTGG+AGG + chr6_1:97406000-97406019 None:intergenic 50.0%
GAGAGAACCTGAGATTGAGG+TGG + chr6_1:97406003-97406022 None:intergenic 50.0%
GACCAATTGATACCTGGCCA+TGG - chr6_1:97407434-97407453 Msa0901140:intron 50.0%
GGCTTAGAGGAATGGTTCCA+TGG + chr6_1:97407454-97407473 None:intergenic 50.0%
TGGAGGTTGAAGAGAAGGAG+AGG + chr6_1:97405983-97406002 None:intergenic 50.0%
TGAGGTGGAGGTTGAAGAGA+AGG + chr6_1:97405988-97406007 None:intergenic 50.0%
TCAACCTCCACCTCAATCTC+AGG - chr6_1:97405993-97406012 Msa0901140:three_prime_UTR 50.0%
AGAACCTGAGATTGAGGTGG+AGG + chr6_1:97406000-97406019 None:intergenic 50.0%
GAGAGAACCTGAGATTGAGG+TGG + chr6_1:97406003-97406022 None:intergenic 50.0%
GACCAATTGATACCTGGCCA+TGG - chr6_1:97407434-97407453 Msa0901140:intron 50.0%
GGCTTAGAGGAATGGTTCCA+TGG + chr6_1:97407454-97407473 None:intergenic 50.0%
AGAGGAATGGTTCCATGGCC+AGG + chr6_1:97407449-97407468 None:intergenic 55.0%
AATTTGTGGCAGCAGAGCGG+CGG - chr6_1:97407593-97407612 Msa0901140:intron 55.0%
! GGCGGTAACTTGTCCTCCTA+AGG - chr6_1:97407611-97407630 Msa0901140:intron 55.0%
AGAGGAATGGTTCCATGGCC+AGG + chr6_1:97407449-97407468 None:intergenic 55.0%
AATTTGTGGCAGCAGAGCGG+CGG - chr6_1:97407593-97407612 Msa0901140:intron 55.0%
! GGCGGTAACTTGTCCTCCTA+AGG - chr6_1:97407611-97407630 Msa0901140:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 97405661 97408016 97405661 ID=Msa0901140;Name=Msa0901140
chr6_1 mRNA 97405661 97408016 97405661 ID=Msa0901140-mRNA-1;Parent=Msa0901140;Name=Msa0901140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=114|1|1|1|1|1|2|385|174
chr6_1 exon 97405661 97406330 97405661 ID=Msa0901140-mRNA-1:exon:17120;Parent=Msa0901140-mRNA-1
chr6_1 exon 97407663 97408016 97407663 ID=Msa0901140-mRNA-1:exon:17119;Parent=Msa0901140-mRNA-1
chr6_1 five_prime_UTR 97407903 97408016 97407903 ID=Msa0901140-mRNA-1:five_prime_utr;Parent=Msa0901140-mRNA-1
chr6_1 CDS 97407663 97407902 97407663 ID=Msa0901140-mRNA-1:cds;Parent=Msa0901140-mRNA-1
chr6_1 CDS 97406046 97406330 97406046 ID=Msa0901140-mRNA-1:cds;Parent=Msa0901140-mRNA-1
chr6_1 three_prime_UTR 97405661 97406045 97405661 ID=Msa0901140-mRNA-1:three_prime_utr;Parent=Msa0901140-mRNA-1
Gene Sequence

>Msa0901140

ATGAACATGTTAGCATCATCATCATCAACAACAACAACATCAATGTCTGTTCTTCTTCCAACAACTTCAAAACCTCTTTTTACAACAACCTTTTCAATTCGACCCATCAAAACAAACAACGTACATATGAACAAGTTGAAGATGAAAACTAACCGCTTTACTGTTTCTGCTCTTGTTGCTGAAGATGCTGCTGTTTCTTCTCAATCCTCTCCTTCTCTTCAACCTCCACCTCAATCTCAGAAGCTAGGAGTGGTTGTGAAACCAACAGACAAACCAAGACTCGTGTTGAAGTTCATTTGGATGGAGAAGAACATCGGTATTGGACTTGACCAATTGATACCTGGCCATGGAACCATTCCTCTAAGCCCTTATTACTTTTGGCCAAGGAAAGATGCTTGGGAAGAACTCAAGGAGTTGCTAGAGAGTAAGCCTTGGATATCACAAAAGCAAATGATTATTCTTCTCAATCAAGCCACCGATATTATCAATTTGTGGCAGCAGAGCGGCGGTAACTTGTCCTCCTAA

Protein sequence

>Msa0901140

MNMLASSSSTTTTSMSVLLPTTSKPLFTTTFSIRPIKTNNVHMNKLKMKTNRFTVSALVAEDAAVSSQSSPSLQPPPQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQLIPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLSS*