AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646570 MtrunA17_Chr4g0034981 71.975 314 72 5 1 305 1 307 4.03e-143 419
Msa0646570 MtrunA17_Chr4g0034981 98.137 161 3 0 207 367 457 617 9.17e-108 328
Msa0646570 MtrunA17_Chr6g0448821 37.013 154 90 2 183 335 209 356 1.53e-20 92.0
Msa0646570 MtrunA17_Chr2g0311181 35.772 123 78 1 231 352 194 316 3.24e-16 78.6
Msa0646570 MtrunA17_Chr5g0428941 33.058 121 73 1 215 335 370 482 4.37e-16 79.7
Msa0646570 MtrunA17_Chr2g0304101 31.737 167 79 3 209 340 143 309 2.38e-13 70.1
Msa0646570 MtrunA17_Chr5g0417641 34.259 108 70 1 231 337 187 294 4.15e-12 66.2
Msa0646570 MtrunA17_Chr1g0212691 28.169 142 94 3 196 335 315 450 6.83e-12 66.6
Msa0646570 MtrunA17_Chr7g0250261 33.333 129 81 4 209 335 154 279 4.66e-11 63.2
Msa0646570 MtrunA17_Chr0c29g0494001 33.333 129 81 4 209 335 154 279 4.66e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646570 AT2G21710.1 64.706 153 54 0 207 359 464 616 4.35e-65 218
Msa0646570 AT2G21710.1 37.690 329 148 9 32 304 24 351 2.68e-54 189
Msa0646570 AT2G21710.2 37.690 329 148 9 32 304 24 351 1.21e-54 189
Msa0646570 AT2G21710.2 72.043 93 26 0 207 299 464 556 5.79e-39 146
Msa0646570 AT2G21710.3 37.690 329 148 9 32 304 24 351 1.85e-54 188
Msa0646570 AT2G21710.3 72.826 92 25 0 207 298 464 555 2.01e-38 145
Msa0646570 AT1G78930.1 41.985 131 74 2 206 335 445 574 1.19e-20 94.0
Msa0646570 AT2G36000.1 36.036 111 70 1 231 340 202 312 1.16e-14 74.7
Msa0646570 AT2G36000.2 36.036 111 70 1 231 340 202 312 1.51e-14 74.3
Msa0646570 AT4G02990.2 30.303 132 91 1 204 335 360 490 2.89e-13 71.2
Msa0646570 AT4G02990.1 30.303 132 91 1 204 335 360 490 2.89e-13 71.2
Msa0646570 AT2G34620.1 30.147 136 92 2 207 341 163 296 6.10e-12 66.2
Msa0646570 AT4G38160.4 30.000 130 88 3 209 336 193 321 7.87e-12 66.2
Msa0646570 AT4G38160.1 30.000 130 88 3 209 336 193 321 7.87e-12 66.2
Msa0646570 AT4G38160.2 30.233 129 87 3 209 335 193 320 8.34e-12 66.2
Msa0646570 AT4G38160.3 30.000 130 88 3 209 336 193 321 1.05e-11 66.2
Msa0646570 AT3G18870.1 32.381 105 70 1 237 340 169 273 3.77e-11 63.5
Msa0646570 AT2G44020.1 23.125 160 108 3 204 361 325 471 5.42e-11 64.3

Find 100 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATAGCCATGTTATTTA+TGG 0.081418 4_3:+52339500 None:intergenic
CTTCATCATCACACCGAAAA+AGG 0.150541 4_3:+52342401 None:intergenic
TGACAGTAGATTGAAGTTTA+TGG 0.164656 4_3:+52340592 None:intergenic
GCACTGTCTAAGATGGTTTA+AGG 0.204913 4_3:-52340170 Msa0646570:intron
AATTACTTATACTGGTAATT+TGG 0.209026 4_3:-52342290 Msa0646570:CDS
CGGCATACGTCTTCGGCAAC+TGG 0.256271 4_3:-52340994 Msa0646570:CDS
TTGACGATGGTGGTGAGTTT+TGG 0.269650 4_3:+52342697 None:intergenic
AATTTGAGCGTTGATCTTTC+AGG 0.275922 4_3:+52339658 None:intergenic
TTCTGGGAATTGGTTGGTTT+TGG 0.280150 4_3:+52342650 None:intergenic
GCAATGCGGAAGGGTAAATT+TGG 0.282919 4_3:-52342313 Msa0646570:CDS
TTACGTCTGGGCTGTAGATT+GGG 0.307230 4_3:+52340548 None:intergenic
TTTACGTCTGGGCTGTAGAT+TGG 0.307874 4_3:+52340547 None:intergenic
AAATTTGGAATTACTTATAC+TGG 0.310485 4_3:-52342298 Msa0646570:CDS
TATATCTTGCAAATTATCTT+AGG 0.317543 4_3:+52339549 None:intergenic
GGTAATTTGGTTGATAGGTT+GGG 0.326740 4_3:-52342277 Msa0646570:CDS
TGAAGAAGAGGGAATGATTA+TGG 0.327848 4_3:-52342383 Msa0646570:CDS
ATACTGGTAATTTGGTTGAT+AGG 0.329853 4_3:-52342282 Msa0646570:CDS
AAAGTCGAATTTGAATATTC+CGG 0.331125 4_3:+52342205 None:intergenic
TGTCTCTCGGCATACGTCTT+CGG 0.352299 4_3:-52341001 Msa0646570:CDS
TGCTAATTTGAAAAGATTGC+CGG 0.361400 4_3:-52342224 Msa0646570:CDS
ATTCCAAAGGTTATAGCTCT+TGG 0.363130 4_3:-52341083 Msa0646570:CDS
AGCTCTTGGACCTGAGCTCT+TGG 0.369738 4_3:-52341069 Msa0646570:CDS
AAAAGAACCCCACAGTTTCC+AGG 0.379101 4_3:-52342487 Msa0646570:CDS
GGTGTTGTTCGTTTGGGTTT+TGG 0.381963 4_3:+52342671 None:intergenic
GCATTGTGTCTTCTGGGAAT+TGG 0.382568 4_3:+52342640 None:intergenic
TCTTACTGTATTAACTTCAT+TGG 0.384451 4_3:-52340455 Msa0646570:three_prime_UTR
GGTCCAAGAGCTATAACCTT+TGG 0.387818 4_3:+52341080 None:intergenic
CAGAAACTCAGTTGAGGAAA+AGG 0.390472 4_3:-52340348 Msa0646570:three_prime_UTR
GTCTCCGCAATTCTATTCAT+TGG 0.394501 4_3:+52340211 None:intergenic
TATTCCAAGACACAAGGTTC+TGG 0.399312 4_3:-52340706 Msa0646570:CDS
TTCTTCAGTGACTCCAGCCT+TGG 0.412260 4_3:+52341109 None:intergenic
TCCACCAGAACCTTGTGTCT+TGG 0.429802 4_3:+52340702 None:intergenic
GCTCTTGGACCTGAGCTCTT+GGG 0.443260 4_3:-52341068 Msa0646570:CDS
ACTTGCAATTTATCATCCGC+TGG 0.450052 4_3:-52340295 Msa0646570:three_prime_UTR
TTGCGCAAATAAGTATACTT+AGG 0.455182 4_3:+52340915 None:intergenic
TGGTAATTTGGTTGATAGGT+TGG 0.459689 4_3:-52342278 Msa0646570:CDS
GTAAAGTATTATTTGTCTCT+CGG 0.471517 4_3:-52341014 Msa0646570:CDS
TTACCTTGAGCCGTCTATCC+CGG 0.471958 4_3:-52339708 Msa0646570:three_prime_UTR
CAATGACATCGTGCAAAGTT+CGG 0.479808 4_3:+52340883 None:intergenic
ACTTCTTGCACTGTCTAAGA+TGG 0.480138 4_3:-52340177 Msa0646570:three_prime_UTR
CGGTGTGATGATGAAGAAGA+GGG 0.493695 4_3:-52342394 Msa0646570:CDS
TATTGTATCTGAGCAGCATT+GGG 0.494643 4_3:+52340952 None:intergenic
CAATTGCTAAAGAGTGTGCT+TGG 0.499143 4_3:-52340256 Msa0646570:three_prime_UTR
GTTGGGTCTTGTAGTGAAGT+TGG 0.500264 4_3:+52342556 None:intergenic
TGTGTCTTCTGGGAATTGGT+TGG 0.500366 4_3:+52342644 None:intergenic
GGAAGTGAAGAACCCACATC+AGG 0.503162 4_3:+52342436 None:intergenic
TGAATCTGCTGATACTCAGC+CGG 0.506642 4_3:+52339689 None:intergenic
GTGCAAGAAGTACACGGGTC+AGG 0.513217 4_3:+52340189 None:intergenic
TCAATCTACTGTCATGAAAG+AGG 0.513691 4_3:-52340583 Msa0646570:CDS
GAATCTGCTGATACTCAGCC+GGG 0.517649 4_3:+52339690 None:intergenic
ACGATGTCATTGAGTTTCCC+AGG 0.527231 4_3:-52340872 Msa0646570:intron
AGCATAGTACATAAGCTTGA+AGG 0.532239 4_3:-52341041 Msa0646570:CDS
ATATTCTTGATGACCAAGGC+TGG 0.532993 4_3:-52341122 Msa0646570:CDS
CGTTAACAGCGATGATATGT+CGG 0.537424 4_3:+52339734 None:intergenic
GAGAATGATATCTTGCAGCT+TGG 0.538041 4_3:+52339595 None:intergenic
ATCTCCAAGTGATCCTGATG+TGG 0.539338 4_3:-52342449 Msa0646570:CDS
AATTTGGTTGATAGGTTGGG+TGG 0.539654 4_3:-52342274 Msa0646570:CDS
ATGCTGCATCCCAAGAGCTC+AGG 0.539681 4_3:+52341059 None:intergenic
GAACCCACATCAGGATCACT+TGG 0.546534 4_3:+52342445 None:intergenic
TCGTAGGAAGGTTACTGAAG+AGG 0.548898 4_3:-52342347 Msa0646570:CDS
GGCATACGTCTTCGGCAACT+GGG 0.551380 4_3:-52340993 Msa0646570:CDS
ATATTGTATCTGAGCAGCAT+TGG 0.552053 4_3:+52340951 None:intergenic
AGCTATTGAGATTCGTAGGA+AGG 0.552352 4_3:-52342359 Msa0646570:CDS
GAGTCATTTAACACCCGCCT+TGG 0.552566 4_3:+52340393 None:intergenic
TCGGTGTGATGATGAAGAAG+AGG 0.554684 4_3:-52342395 Msa0646570:CDS
TCCAAGACACAAGGTTCTGG+TGG 0.555314 4_3:-52340703 Msa0646570:CDS
TGTGGATAGAAGAATGAGGA+AGG 0.560659 4_3:+52342731 None:intergenic
CTTGCAATTTATCATCCGCT+GGG 0.560833 4_3:-52340294 Msa0646570:three_prime_UTR
ATCATAACTGTTCTTCTCCA+AGG 0.561726 4_3:-52340410 Msa0646570:three_prime_UTR
TGGAAGCTATTGAGATTCGT+AGG 0.571096 4_3:-52342363 Msa0646570:CDS
TACTTATTTGCGCAAAACCA+TGG 0.571905 4_3:-52340907 Msa0646570:CDS
TACGTCTGGGCTGTAGATTG+GGG 0.575774 4_3:+52340549 None:intergenic
TAAATTGAACCTGGAAACTG+TGG 0.577201 4_3:+52342478 None:intergenic
TAACTGTTCTTCTCCAAGGC+GGG 0.582270 4_3:-52340406 Msa0646570:three_prime_UTR
GATTGAGCGTAAATTGAACC+TGG 0.592608 4_3:+52342469 None:intergenic
TGGAATAATTCGACCCTCGA+GGG 0.595008 4_3:+52340722 None:intergenic
AGGGTGTGGATAGAAGAATG+AGG 0.600685 4_3:+52342727 None:intergenic
CAGCCGGGATAGACGGCTCA+AGG 0.602682 4_3:+52339705 None:intergenic
TCTCCAAGTGATCCTGATGT+GGG 0.605585 4_3:-52342448 Msa0646570:CDS
CACTGAAGAAAATATTCCAA+AGG 0.608783 4_3:-52341096 Msa0646570:CDS
GCTGCAAGATATCATTCTCA+AGG 0.609933 4_3:-52339591 Msa0646570:three_prime_UTR
TAGACAGTGCAAGAAGTACA+CGG 0.614958 4_3:+52340183 None:intergenic
TGATACTCAGCCGGGATAGA+CGG 0.615627 4_3:+52339698 None:intergenic
ATCGTGCAAAGTTCGGACCA+TGG 0.622950 4_3:+52340890 None:intergenic
TTTAAAGAAGCAATGCGGAA+GGG 0.624488 4_3:-52342322 Msa0646570:CDS
TCTTGTAGTGAAGTTGGTGA+AGG 0.630250 4_3:+52342562 None:intergenic
AAATTGAACCTGGAAACTGT+GGG 0.637519 4_3:+52342479 None:intergenic
TCGAATTATTCCAAGACACA+AGG 0.638216 4_3:-52340712 Msa0646570:CDS
TTGGAATAATTCGACCCTCG+AGG 0.648302 4_3:+52340721 None:intergenic
GTGCAGCAGAAACTCAGTTG+AGG 0.649477 4_3:-52340354 Msa0646570:three_prime_UTR
TGTGCCAATGAATAGAATTG+CGG 0.666692 4_3:-52340215 Msa0646570:three_prime_UTR
GGTCATATTCTTGATGACCA+AGG 0.669719 4_3:-52341126 Msa0646570:CDS
AGATGAAGAATTTAACAACA+TGG 0.681193 4_3:-52340637 Msa0646570:CDS
AATACAGTAAGATTAATATG+CGG 0.681460 4_3:+52340466 None:intergenic
AGACAGTGCAAGAAGTACAC+GGG 0.687306 4_3:+52340184 None:intergenic
ATAACTGTTCTTCTCCAAGG+CGG 0.694901 4_3:-52340407 Msa0646570:three_prime_UTR
TATCTTCACAAGTGACCCAG+CGG 0.704700 4_3:+52340279 None:intergenic
TTCATTGGCACATTCCACAG+TGG 0.731153 4_3:+52340226 None:intergenic
AATTGAACCTGGAAACTGTG+GGG 0.731440 4_3:+52342480 None:intergenic
TGCTTGGAAACATGCCACTG+TGG 0.736217 4_3:-52340240 Msa0646570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCGACTTTTAATTTAA+GGG - chr4_3:52340034-52340053 Msa0646570:intron 15.0%
!!! TTTTAAAAATTGTGTATCTA+TGG + chr4_3:52341399-52341418 None:intergenic 15.0%
!!! AAGTTTCATTTTTGTTTAAT+AGG + chr4_3:52341917-52341936 None:intergenic 15.0%
!!! ATTTTAATCCATAAATAACA+TGG - chr4_3:52342720-52342739 Msa0646570:CDS 15.0%
!!! AAATTTGGAATTACTTATAC+TGG - chr4_3:52339930-52339949 Msa0646570:intron 20.0%
!! AATTACTTATACTGGTAATT+TGG - chr4_3:52339938-52339957 Msa0646570:intron 20.0%
!!! CAAATTCGACTTTTAATTTA+AGG - chr4_3:52340033-52340052 Msa0646570:intron 20.0%
!!! ATTTAAAGTTGAATATGCAA+TGG + chr4_3:52341448-52341467 None:intergenic 20.0%
!! AATACAGTAAGATTAATATG+CGG + chr4_3:52341765-52341784 None:intergenic 20.0%
!! TATATCTTGCAAATTATCTT+AGG + chr4_3:52342682-52342701 None:intergenic 20.0%
!!! AGTTTAATTTTTTCTTCGTG+AGG + chr4_3:52339699-52339718 None:intergenic 25.0%
! AAAGTCGAATTTGAATATTC+CGG + chr4_3:52340026-52340045 None:intergenic 25.0%
! TTATGAATTGAGATTAGTGT+TGG - chr4_3:52340109-52340128 Msa0646570:intron 25.0%
! AGAATTATTTGAATGTAACC+AGG - chr4_3:52340208-52340227 Msa0646570:three_prime_UTR 25.0%
! CAAAATATGCACTGAAAATT+TGG + chr4_3:52340461-52340480 None:intergenic 25.0%
!! AATGGTAACAAATTTTGTAG+CGG + chr4_3:52340967-52340986 None:intergenic 25.0%
! GCTTCAGAAAAATTACTTAA+TGG + chr4_3:52340985-52341004 None:intergenic 25.0%
!! GTAAAGTATTATTTGTCTCT+CGG - chr4_3:52341214-52341233 Msa0646570:intron 25.0%
! TCTAAATATCATTGATACCT+GGG + chr4_3:52341376-52341395 None:intergenic 25.0%
! AGATGAAGAATTTAACAACA+TGG - chr4_3:52341591-52341610 Msa0646570:intron 25.0%
! TCTTACTGTATTAACTTCAT+TGG - chr4_3:52341773-52341792 Msa0646570:intron 25.0%
!!! ATTTTTGTTTAATAGGACAG+AGG + chr4_3:52341910-52341929 None:intergenic 25.0%
!!! TGTTCGTGTTTTTTTGTGTA+AGG + chr4_3:52339641-52339660 None:intergenic 30.0%
!! AGGTTTTTAAAGAAGCAATG+CGG - chr4_3:52339901-52339920 Msa0646570:intron 30.0%
ATACTGGTAATTTGGTTGAT+AGG - chr4_3:52339946-52339965 Msa0646570:intron 30.0%
TGCTAATTTGAAAAGATTGC+CGG - chr4_3:52340004-52340023 Msa0646570:intron 30.0%
TAACCATAATACCTGATAAG+TGG + chr4_3:52340092-52340111 None:intergenic 30.0%
ACATCTTTGATTAGAGTTGT+CGG - chr4_3:52340255-52340274 Msa0646570:three_prime_UTR 30.0%
!! TTGATTTGCGTATTGTTGTT+AGG - chr4_3:52340728-52340747 Msa0646570:CDS 30.0%
CATTTCTTCAATTCTCTAGA+TGG - chr4_3:52340780-52340799 Msa0646570:intron 30.0%
AATCAGTGTGATAAACTTTG+TGG + chr4_3:52341015-52341034 None:intergenic 30.0%
TTATAAACTGTCTGATCAAG+AGG - chr4_3:52341039-52341058 Msa0646570:CDS 30.0%
!! TGAGTTTGCTTGTTGTATAT+AGG - chr4_3:52341081-52341100 Msa0646570:CDS 30.0%
CACTGAAGAAAATATTCCAA+AGG - chr4_3:52341132-52341151 Msa0646570:intron 30.0%
TTGCGCAAATAAGTATACTT+AGG + chr4_3:52341316-52341335 None:intergenic 30.0%
GTCTAAATATCATTGATACC+TGG + chr4_3:52341377-52341396 None:intergenic 30.0%
TGACAGTAGATTGAAGTTTA+TGG + chr4_3:52341639-52341658 None:intergenic 30.0%
!! TCAAAGTACCCCTTTTATTA+AGG - chr4_3:52342157-52342176 Msa0646570:intron 30.0%
!! CAAAGTACCCCTTTTATTAA+GGG - chr4_3:52342158-52342177 Msa0646570:intron 30.0%
! AGAGATAGCCATGTTATTTA+TGG + chr4_3:52342731-52342750 None:intergenic 30.0%
! GATTTTGCATTGTGTCTTCT+GGG + chr4_3:52339597-52339616 None:intergenic 35.0%
! TGATTTTGCATTGTGTCTTC+TGG + chr4_3:52339598-52339617 None:intergenic 35.0%
!!! TCGTGTTTTTTTGTGTAAGG+TGG + chr4_3:52339638-52339657 None:intergenic 35.0%
!!! TTTTTTCTTCGTGAGGTGTT+GGG + chr4_3:52339692-52339711 None:intergenic 35.0%
!!! ATTTTTTCTTCGTGAGGTGT+TGG + chr4_3:52339693-52339712 None:intergenic 35.0%
! TGGGGTTCTTTTTCTTACTA+AGG + chr4_3:52339733-52339752 None:intergenic 35.0%
AAATTGAACCTGGAAACTGT+GGG + chr4_3:52339752-52339771 None:intergenic 35.0%
TAAATTGAACCTGGAAACTG+TGG + chr4_3:52339753-52339772 None:intergenic 35.0%
TTCATCATCACACCGAAAAA+GGG + chr4_3:52339829-52339848 None:intergenic 35.0%
TGAAGAAGAGGGAATGATTA+TGG - chr4_3:52339845-52339864 Msa0646570:intron 35.0%
!! TTTTAAAGAAGCAATGCGGA+AGG - chr4_3:52339905-52339924 Msa0646570:intron 35.0%
TTTAAAGAAGCAATGCGGAA+GGG - chr4_3:52339906-52339925 Msa0646570:intron 35.0%
!! TGGTAATTTGGTTGATAGGT+TGG - chr4_3:52339950-52339969 Msa0646570:intron 35.0%
!! GGTAATTTGGTTGATAGGTT+GGG - chr4_3:52339951-52339970 Msa0646570:intron 35.0%
ACTCTAATCAAAGATGTGTC+TGG + chr4_3:52340252-52340271 None:intergenic 35.0%
!! TAGAGTTGTCGGTGTTAAAA+AGG - chr4_3:52340266-52340285 Msa0646570:three_prime_UTR 35.0%
ACACAACACAACAAGTAAGT+TGG + chr4_3:52340351-52340370 None:intergenic 35.0%
TGTTGTGTTGTGTGTATTGT+TGG - chr4_3:52340358-52340377 Msa0646570:three_prime_UTR 35.0%
GTTGTGTGTATTGTTGGAAA+TGG - chr4_3:52340364-52340383 Msa0646570:three_prime_UTR 35.0%
ATGAGTGAATGCCTCATTAT+TGG + chr4_3:52340400-52340419 None:intergenic 35.0%
! TAATGAGGCATTCACTCATT+CGG - chr4_3:52340401-52340420 Msa0646570:three_prime_UTR 35.0%
! TTATTCGGTGAAACACATGT+GGG + chr4_3:52340587-52340606 None:intergenic 35.0%
AGTGAACACTTTCTCGAAAT+CGG + chr4_3:52340696-52340715 None:intergenic 35.0%
AAAATGAGCTTAGCTATCTG+AGG + chr4_3:52340830-52340849 None:intergenic 35.0%
! CTCAGCAGATTAGTTAATTG+AGG + chr4_3:52341065-52341084 None:intergenic 35.0%
ATTCCAAAGGTTATAGCTCT+TGG - chr4_3:52341145-52341164 Msa0646570:intron 35.0%
AGCATAGTACATAAGCTTGA+AGG - chr4_3:52341187-52341206 Msa0646570:intron 35.0%
TATTGTATCTGAGCAGCATT+GGG + chr4_3:52341279-52341298 None:intergenic 35.0%
ATATTGTATCTGAGCAGCAT+TGG + chr4_3:52341280-52341299 None:intergenic 35.0%
TACTTATTTGCGCAAAACCA+TGG - chr4_3:52341321-52341340 Msa0646570:intron 35.0%
TCGAATTATTCCAAGACACA+AGG - chr4_3:52341516-52341535 Msa0646570:intron 35.0%
TCAATCTACTGTCATGAAAG+AGG - chr4_3:52341645-52341664 Msa0646570:intron 35.0%
! CGGTTTTTCTTTTTACGTCT+GGG + chr4_3:52341695-52341714 None:intergenic 35.0%
! TCGGTTTTTCTTTTTACGTC+TGG + chr4_3:52341696-52341715 None:intergenic 35.0%
GACGTAAAAAGAAAAACCGA+TGG - chr4_3:52341696-52341715 Msa0646570:intron 35.0%
ATCATAACTGTTCTTCTCCA+AGG - chr4_3:52341818-52341837 Msa0646570:intron 35.0%
TGTGCCAATGAATAGAATTG+CGG - chr4_3:52342013-52342032 Msa0646570:intron 35.0%
TGTTGCACTAATTTCTATCG+TGG - chr4_3:52342125-52342144 Msa0646570:intron 35.0%
CAACAAGCCCTTAATAAAAG+GGG + chr4_3:52342168-52342187 None:intergenic 35.0%
CCAACAAGCCCTTAATAAAA+GGG + chr4_3:52342169-52342188 None:intergenic 35.0%
TCCAACAAGCCCTTAATAAA+AGG + chr4_3:52342170-52342189 None:intergenic 35.0%
!! TTATTAAGGGCTTGTTGGAT+TGG - chr4_3:52342171-52342190 Msa0646570:CDS 35.0%
ATAAGCTCTCACAAGTGATT+GGG + chr4_3:52342205-52342224 None:intergenic 35.0%
TGGAAAGTGGAAACAACTTA+TGG - chr4_3:52342224-52342243 Msa0646570:CDS 35.0%
!! AATTTGAGCGTTGATCTTTC+AGG + chr4_3:52342573-52342592 None:intergenic 35.0%
TGTGGATAGAAGAATGAGGA+AGG + chr4_3:52339500-52339519 None:intergenic 40.0%
!!! GGTGAGTTTTGGGTTTTTGA+GGG + chr4_3:52339523-52339542 None:intergenic 40.0%
!!! TGGTGAGTTTTGGGTTTTTG+AGG + chr4_3:52339524-52339543 None:intergenic 40.0%
!!! GGTTTTGGTGTTGTTCGTTT+GGG + chr4_3:52339566-52339585 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGTTCGTT+TGG + chr4_3:52339567-52339586 None:intergenic 40.0%
!!! TTCTGGGAATTGGTTGGTTT+TGG + chr4_3:52339581-52339600 None:intergenic 40.0%
!! TCTTGTAGTGAAGTTGGTGA+AGG + chr4_3:52339669-52339688 None:intergenic 40.0%
AATTGAACCTGGAAACTGTG+GGG + chr4_3:52339751-52339770 None:intergenic 40.0%
GATTGAGCGTAAATTGAACC+TGG + chr4_3:52339762-52339781 None:intergenic 40.0%
! CTCCATTGAGTACCCTTTTT+CGG - chr4_3:52339814-52339833 Msa0646570:intron 40.0%
CTTCATCATCACACCGAAAA+AGG + chr4_3:52339830-52339849 None:intergenic 40.0%
TGGAAGCTATTGAGATTCGT+AGG - chr4_3:52339865-52339884 Msa0646570:intron 40.0%
AGCTATTGAGATTCGTAGGA+AGG - chr4_3:52339869-52339888 Msa0646570:intron 40.0%
!! AATTTGGTTGATAGGTTGGG+TGG - chr4_3:52339954-52339973 Msa0646570:intron 40.0%
!! GTGCCACTTATCAGGTATTA+TGG - chr4_3:52340086-52340105 Msa0646570:intron 40.0%
ACCCATTGACACATTGACAT+CGG - chr4_3:52340169-52340188 Msa0646570:intron 40.0%
ACCGATGTCAATGTGTCAAT+GGG + chr4_3:52340173-52340192 None:intergenic 40.0%
TACCGATGTCAATGTGTCAA+TGG + chr4_3:52340174-52340193 None:intergenic 40.0%
GATTGCCATAGCCAATAATG+AGG - chr4_3:52340386-52340405 Msa0646570:three_prime_UTR 40.0%
! GAATGCCTCATTATTGGCTA+TGG + chr4_3:52340394-52340413 None:intergenic 40.0%
TCGTTGGAATGAAATCTGGT+GGG - chr4_3:52340435-52340454 Msa0646570:three_prime_UTR 40.0%
TGGGATTCATTTCGAAAGTG+TGG - chr4_3:52340559-52340578 Msa0646570:CDS 40.0%
! GGGATTCATTTCGAAAGTGT+GGG - chr4_3:52340560-52340579 Msa0646570:CDS 40.0%
! CTTATTCGGTGAAACACATG+TGG + chr4_3:52340588-52340607 None:intergenic 40.0%
CTAGCACTCACTCTCTTATT+CGG + chr4_3:52340602-52340621 None:intergenic 40.0%
CAGTGTGATAAACTTTGTGG+TGG + chr4_3:52341012-52341031 None:intergenic 40.0%
! GGTCATATTCTTGATGACCA+AGG - chr4_3:52341102-52341121 Msa0646570:CDS 40.0%
! ATATTCTTGATGACCAAGGC+TGG - chr4_3:52341106-52341125 Msa0646570:CDS 40.0%
CAATGACATCGTGCAAAGTT+CGG + chr4_3:52341348-52341367 None:intergenic 40.0%
!! GCAATTCTCTTGCTGTTATC+AGG - chr4_3:52341470-52341489 Msa0646570:intron 40.0%
!! TTTTTCAGCTATTCCCTCGA+GGG - chr4_3:52341493-52341512 Msa0646570:intron 40.0%
TATTCCAAGACACAAGGTTC+TGG - chr4_3:52341522-52341541 Msa0646570:intron 40.0%
ATAACTGTTCTTCTCCAAGG+CGG - chr4_3:52341821-52341840 Msa0646570:intron 40.0%
CAGAAACTCAGTTGAGGAAA+AGG - chr4_3:52341880-52341899 Msa0646570:intron 40.0%
ACTTGCAATTTATCATCCGC+TGG - chr4_3:52341933-52341952 Msa0646570:intron 40.0%
CTTGCAATTTATCATCCGCT+GGG - chr4_3:52341934-52341953 Msa0646570:intron 40.0%
! CAATTGCTAAAGAGTGTGCT+TGG - chr4_3:52341972-52341991 Msa0646570:intron 40.0%
GTCTCCGCAATTCTATTCAT+TGG + chr4_3:52342020-52342039 None:intergenic 40.0%
! TAGACAGTGCAAGAAGTACA+CGG + chr4_3:52342048-52342067 None:intergenic 40.0%
ACTTCTTGCACTGTCTAAGA+TGG - chr4_3:52342051-52342070 Msa0646570:intron 40.0%
! GCACTGTCTAAGATGGTTTA+AGG - chr4_3:52342058-52342077 Msa0646570:intron 40.0%
! CCCTTTTATTAAGGGCTTGT+TGG - chr4_3:52342166-52342185 Msa0646570:intron 40.0%
CATAAGCTCTCACAAGTGAT+TGG + chr4_3:52342206-52342225 None:intergenic 40.0%
CAATCACTTGTGAGAGCTTA+TGG - chr4_3:52342204-52342223 Msa0646570:CDS 40.0%
TTGTGAGAGCTTATGGAAAG+TGG - chr4_3:52342211-52342230 Msa0646570:CDS 40.0%
!!! TACGACTTTTTTCCCCTGAT+AGG - chr4_3:52342428-52342447 Msa0646570:CDS 40.0%
! TTTTCCCCTGATAGGAATTG+TGG - chr4_3:52342436-52342455 Msa0646570:CDS 40.0%
TCTTCCACAATTCCTATCAG+GGG + chr4_3:52342443-52342462 None:intergenic 40.0%
GTCTTCCACAATTCCTATCA+GGG + chr4_3:52342444-52342463 None:intergenic 40.0%
AGTCTTCCACAATTCCTATC+AGG + chr4_3:52342445-52342464 None:intergenic 40.0%
CGTTAACAGCGATGATATGT+CGG + chr4_3:52342497-52342516 None:intergenic 40.0%
GAGAATGATATCTTGCAGCT+TGG + chr4_3:52342636-52342655 None:intergenic 40.0%
GCTGCAAGATATCATTCTCA+AGG - chr4_3:52342637-52342656 Msa0646570:CDS 40.0%
AGGGTGTGGATAGAAGAATG+AGG + chr4_3:52339504-52339523 None:intergenic 45.0%
!!! GTTTTGGGTTTTTGAGGGTG+TGG + chr4_3:52339518-52339537 None:intergenic 45.0%
!! TGACGATGGTGGTGAGTTTT+GGG + chr4_3:52339533-52339552 None:intergenic 45.0%
!! TTGACGATGGTGGTGAGTTT+TGG + chr4_3:52339534-52339553 None:intergenic 45.0%
!!! GGTGTTGTTCGTTTGGGTTT+TGG + chr4_3:52339560-52339579 None:intergenic 45.0%
! TGTGTCTTCTGGGAATTGGT+TGG + chr4_3:52339587-52339606 None:intergenic 45.0%
! GCATTGTGTCTTCTGGGAAT+TGG + chr4_3:52339591-52339610 None:intergenic 45.0%
! GTTGGGTCTTGTAGTGAAGT+TGG + chr4_3:52339675-52339694 None:intergenic 45.0%
AAAAGAACCCCACAGTTTCC+AGG - chr4_3:52339741-52339760 Msa0646570:three_prime_UTR 45.0%
ATCTCCAAGTGATCCTGATG+TGG - chr4_3:52339779-52339798 Msa0646570:three_prime_UTR 45.0%
TCTCCAAGTGATCCTGATGT+GGG - chr4_3:52339780-52339799 Msa0646570:three_prime_UTR 45.0%
!! CGAAAAAGGGTACTCAATGG+AGG + chr4_3:52339816-52339835 None:intergenic 45.0%
!! CACCGAAAAAGGGTACTCAA+TGG + chr4_3:52339819-52339838 None:intergenic 45.0%
! TCGGTGTGATGATGAAGAAG+AGG - chr4_3:52339833-52339852 Msa0646570:intron 45.0%
! CGGTGTGATGATGAAGAAGA+GGG - chr4_3:52339834-52339853 Msa0646570:intron 45.0%
TCGTAGGAAGGTTACTGAAG+AGG - chr4_3:52339881-52339900 Msa0646570:intron 45.0%
GCAATGCGGAAGGGTAAATT+TGG - chr4_3:52339915-52339934 Msa0646570:intron 45.0%
!! CTCAAGTTGTGCCACTTATC+AGG - chr4_3:52340078-52340097 Msa0646570:intron 45.0%
TAACCAGGTGTGTGTTGTGT+CGG - chr4_3:52340223-52340242 Msa0646570:three_prime_UTR 45.0%
TCACTCATTCGGCACATATG+TGG - chr4_3:52340412-52340431 Msa0646570:three_prime_UTR 45.0%
GTGGTCGTTGGAATGAAATC+TGG - chr4_3:52340431-52340450 Msa0646570:three_prime_UTR 45.0%
GTCGTTGGAATGAAATCTGG+TGG - chr4_3:52340434-52340453 Msa0646570:three_prime_UTR 45.0%
TGTGTCTCGTCACTTCATGT+GGG - chr4_3:52340540-52340559 Msa0646570:exon 45.0%
GGTCCAAGAGCTATAACCTT+TGG + chr4_3:52341151-52341170 None:intergenic 45.0%
ACGATGTCATTGAGTTTCCC+AGG - chr4_3:52341356-52341375 Msa0646570:intron 45.0%
!! GTTTTTCAGCTATTCCCTCG+AGG - chr4_3:52341492-52341511 Msa0646570:intron 45.0%
TGGAATAATTCGACCCTCGA+GGG + chr4_3:52341509-52341528 None:intergenic 45.0%
TTGGAATAATTCGACCCTCG+AGG + chr4_3:52341510-52341529 None:intergenic 45.0%
TTACGTCTGGGCTGTAGATT+GGG + chr4_3:52341683-52341702 None:intergenic 45.0%
TTTACGTCTGGGCTGTAGAT+TGG + chr4_3:52341684-52341703 None:intergenic 45.0%
! AAGAAAAACCGATGGCTCTG+TGG - chr4_3:52341704-52341723 Msa0646570:intron 45.0%
! TCTGTTTTCCACAGAGCCAT+CGG + chr4_3:52341715-52341734 None:intergenic 45.0%
TAACTGTTCTTCTCCAAGGC+GGG - chr4_3:52341822-52341841 Msa0646570:intron 45.0%
TATCTTCACAAGTGACCCAG+CGG + chr4_3:52341952-52341971 None:intergenic 45.0%
TTCATTGGCACATTCCACAG+TGG + chr4_3:52342005-52342024 None:intergenic 45.0%
! AGACAGTGCAAGAAGTACAC+GGG + chr4_3:52342047-52342066 None:intergenic 45.0%
TGAATCTGCTGATACTCAGC+CGG + chr4_3:52342542-52342561 None:intergenic 45.0%
!! GTTTTGGCAGTTGACGATGG+TGG + chr4_3:52339544-52339563 None:intergenic 50.0%
!! TGGGTTTTGGCAGTTGACGA+TGG + chr4_3:52339547-52339566 None:intergenic 50.0%
GAACCCACATCAGGATCACT+TGG + chr4_3:52339786-52339805 None:intergenic 50.0%
GGAAGTGAAGAACCCACATC+AGG + chr4_3:52339795-52339814 None:intergenic 50.0%
TTCGGCACATATGTGGTCGT+TGG - chr4_3:52340419-52340438 Msa0646570:three_prime_UTR 50.0%
GTGTGTCTCGTCACTTCATG+TGG - chr4_3:52340539-52340558 Msa0646570:exon 50.0%
TTCTTCAGTGACTCCAGCCT+TGG + chr4_3:52341122-52341141 None:intergenic 50.0%
TGTCTCTCGGCATACGTCTT+CGG - chr4_3:52341227-52341246 Msa0646570:intron 50.0%
ATCGTGCAAAGTTCGGACCA+TGG + chr4_3:52341341-52341360 None:intergenic 50.0%
! TCCAAGACACAAGGTTCTGG+TGG - chr4_3:52341525-52341544 Msa0646570:intron 50.0%
TCCACCAGAACCTTGTGTCT+TGG + chr4_3:52341529-52341548 None:intergenic 50.0%
TACGTCTGGGCTGTAGATTG+GGG + chr4_3:52341682-52341701 None:intergenic 50.0%
GAGTCATTTAACACCCGCCT+TGG + chr4_3:52341838-52341857 None:intergenic 50.0%
GTGCAGCAGAAACTCAGTTG+AGG - chr4_3:52341874-52341893 Msa0646570:intron 50.0%
TGCTTGGAAACATGCCACTG+TGG - chr4_3:52341988-52342007 Msa0646570:intron 50.0%
TTACCTTGAGCCGTCTATCC+CGG - chr4_3:52342520-52342539 Msa0646570:CDS 50.0%
TGATACTCAGCCGGGATAGA+CGG + chr4_3:52342533-52342552 None:intergenic 50.0%
GAATCTGCTGATACTCAGCC+GGG + chr4_3:52342541-52342560 None:intergenic 50.0%
TGTCCGACACAACACACACC+TGG + chr4_3:52340229-52340248 None:intergenic 55.0%
AGCTCTTGGACCTGAGCTCT+TGG - chr4_3:52341159-52341178 Msa0646570:intron 55.0%
GCTCTTGGACCTGAGCTCTT+GGG - chr4_3:52341160-52341179 Msa0646570:intron 55.0%
ATGCTGCATCCCAAGAGCTC+AGG + chr4_3:52341172-52341191 None:intergenic 55.0%
GGCATACGTCTTCGGCAACT+GGG - chr4_3:52341235-52341254 Msa0646570:intron 55.0%
! GTGCAAGAAGTACACGGGTC+AGG + chr4_3:52342042-52342061 None:intergenic 55.0%
CGGCATACGTCTTCGGCAAC+TGG - chr4_3:52341234-52341253 Msa0646570:intron 60.0%
CAGCCGGGATAGACGGCTCA+AGG + chr4_3:52342526-52342545 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52339465 52342785 52339465 ID=Msa0646570;Name=Msa0646570
chr4_3 mRNA 52339465 52342785 52339465 ID=Msa0646570-mRNA-1;Parent=Msa0646570;Name=Msa0646570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.5|1|0.66|0.5|4|713|367
chr4_3 exon 52339465 52339800 52339465 ID=Msa0646570-mRNA-1:exon:12831;Parent=Msa0646570-mRNA-1
chr4_3 exon 52340171 52340758 52340171 ID=Msa0646570-mRNA-1:exon:12830;Parent=Msa0646570-mRNA-1
chr4_3 exon 52340873 52341147 52340873 ID=Msa0646570-mRNA-1:exon:12829;Parent=Msa0646570-mRNA-1
chr4_3 exon 52342168 52342785 52342168 ID=Msa0646570-mRNA-1:exon:12828;Parent=Msa0646570-mRNA-1
chr4_3 CDS 52342168 52342785 52342168 ID=Msa0646570-mRNA-1:cds;Parent=Msa0646570-mRNA-1
chr4_3 CDS 52340873 52341147 52340873 ID=Msa0646570-mRNA-1:cds;Parent=Msa0646570-mRNA-1
chr4_3 CDS 52340548 52340758 52340548 ID=Msa0646570-mRNA-1:cds;Parent=Msa0646570-mRNA-1
chr4_3 three_prime_UTR 52340171 52340547 52340171 ID=Msa0646570-mRNA-1:three_prime_utr;Parent=Msa0646570-mRNA-1
chr4_3 three_prime_UTR 52339465 52339800 52339465 ID=Msa0646570-mRNA-1:three_prime_utr;Parent=Msa0646570-mRNA-1
Gene Sequence

>Msa0646570

ATGCTTCTTTCATATCAAAAACACACTCTTTACCTTCCTCATTCTTCTATCCACACCCTCAAAAACCCAAAACTCACCACCATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACGAACACTAATCCTTCACCAACTTCACTACAAGACCCAACACCTCACGAAGAAAAAATTAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAGTTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGATCCTGATGTGGGTTCTTCACTTCCTCCATTGAGTACCCTTTTTCGGTGTGATGATGAAGAAGAGGGAATGATTATGGAAGCTATTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAGCAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGGTTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCGGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTCCGAACTTTGCACGATGTCATTGAGTTTCCCAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA

Protein sequence

>Msa0646570

MLLSYQKHTLYLPHSSIHTLKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRCDDEEEGMIMEAIEIRRKVTEEVFKEAMRKGKFGITYTGNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLHDVIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT*