Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629280 | XP_003604568.1 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629280 | sp|P46300|RS4_SOLTU | 91.288 | 264 | 23 | 0 | 1 | 264 | 1 | 264 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629280 | G7JLT2 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040220 | Msa0629280 | 0.839232 | 1.792070e-57 | -8.615850e-47 |
| Msa0087910 | Msa0629280 | 0.826440 | 2.710480e-54 | -8.615850e-47 |
| Msa0116600 | Msa0629280 | 0.801651 | 8.144278e-49 | -8.615850e-47 |
| Msa0619230 | Msa0629280 | 0.805239 | 1.469260e-49 | -8.615850e-47 |
| Msa0629280 | Msa0667110 | 0.862154 | 6.196297e-64 | -8.615850e-47 |
| Msa0629280 | Msa0694400 | 0.808408 | 3.142513e-50 | -8.615850e-47 |
| Msa0629280 | Msa0708630 | 0.813480 | 2.506360e-51 | -8.615850e-47 |
| Msa0629280 | Msa0790450 | 0.810469 | 1.134992e-50 | -8.615850e-47 |
| Msa0629280 | Msa0929700 | 0.814912 | 1.210036e-51 | -8.615850e-47 |
| Msa0629280 | Msa0930100 | 0.813554 | 2.413795e-51 | -8.615850e-47 |
| Msa0629280 | Msa0930360 | 0.800790 | 1.221492e-48 | -8.615850e-47 |
| Msa0629280 | Msa0930790 | 0.808890 | 2.480200e-50 | -8.615850e-47 |
| Msa0629280 | Msa1025200 | 0.824521 | 7.715218e-54 | -8.615850e-47 |
| Msa0629280 | Msa1025220 | 0.805228 | 1.477301e-49 | -8.615850e-47 |
| Msa0629280 | Msa1126690 | 0.818192 | 2.228761e-52 | -8.615850e-47 |
| Msa0629280 | Msa1237040 | 0.818419 | 1.979369e-52 | -8.615850e-47 |
| Msa0629280 | Msa1255850 | 0.810584 | 1.071802e-50 | -8.615850e-47 |
| Msa0629280 | Msa1258460 | 0.816253 | 6.082459e-52 | -8.615850e-47 |
| Msa0629280 | Msa1317390 | 0.812807 | 3.520711e-51 | -8.615850e-47 |
| Msa0629280 | Msa1385480 | 0.804632 | 1.967946e-49 | -8.615850e-47 |
| Msa0629280 | Msa1390760 | 0.805213 | 1.488118e-49 | -8.615850e-47 |
| Msa0629280 | Msa1424570 | 0.824311 | 8.647028e-54 | -8.615850e-47 |
| Msa0629280 | Msa1450560 | 0.815525 | 8.841039e-52 | -8.615850e-47 |
| Msa0132460 | Msa0629280 | 0.811293 | 7.527826e-51 | -8.615850e-47 |
| Msa0134580 | Msa0629280 | 0.832588 | 8.678932e-56 | -8.615850e-47 |
| Msa0182050 | Msa0629280 | 0.816529 | 5.276542e-52 | -8.615850e-47 |
| Msa0188740 | Msa0629280 | 0.810420 | 1.163052e-50 | -8.615850e-47 |
| Msa0192300 | Msa0629280 | 0.828685 | 7.834224e-55 | -8.615850e-47 |
| Msa0426250 | Msa0629280 | 0.806406 | 8.356325e-50 | -8.615850e-47 |
| Msa0475810 | Msa0629280 | 0.818281 | 2.127272e-52 | -8.615850e-47 |
| Msa0482260 | Msa0629280 | 0.816212 | 6.214010e-52 | -8.615850e-47 |
| Msa0482560 | Msa0629280 | 0.807913 | 4.006122e-50 | -8.615850e-47 |
| Msa0270160 | Msa0629280 | 0.816513 | 5.321286e-52 | -8.615850e-47 |
| Msa0301250 | Msa0629280 | 0.825555 | 4.396997e-54 | -8.615850e-47 |
| Msa0313060 | Msa0629280 | 0.828406 | 9.152490e-55 | -8.615850e-47 |
| Msa0563540 | Msa0629280 | 0.862844 | 3.798802e-64 | -8.615850e-47 |
| Msa0573550 | Msa0629280 | 0.825010 | 5.917847e-54 | -8.615850e-47 |
| Msa0578010 | Msa0629280 | 0.804972 | 1.670994e-49 | -8.615850e-47 |
| Msa0589160 | Msa0629280 | 0.864516 | 1.149611e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629280 | MtrunA17_Chr4g0005611 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 543 |
| Msa0629280 | MtrunA17_Chr7g0243211 | 96.863 | 255 | 8 | 0 | 1 | 255 | 1 | 255 | 0.0 | 510 |
| Msa0629280 | MtrunA17_Chr5g0403311 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 503 |
| Msa0629280 | MtrunA17_Chr8g0357951 | 96.813 | 251 | 8 | 0 | 1 | 251 | 1 | 251 | 0.0 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629280 | AT2G17360.1 | 91.188 | 261 | 23 | 0 | 1 | 261 | 1 | 261 | 0.0 | 507 |
| Msa0629280 | AT5G07090.1 | 90.840 | 262 | 24 | 0 | 1 | 262 | 1 | 262 | 0.0 | 507 |
| Msa0629280 | AT5G58420.1 | 90.840 | 262 | 24 | 0 | 1 | 262 | 1 | 262 | 0.0 | 507 |
| Msa0629280 | AT5G07090.3 | 90.909 | 242 | 22 | 0 | 19 | 260 | 1 | 242 | 7.79e-170 | 469 |
| Msa0629280 | AT5G07090.2 | 90.909 | 242 | 22 | 0 | 19 | 260 | 1 | 242 | 7.79e-170 | 469 |
| Msa0629280 | AT2G17360.2 | 91.713 | 181 | 15 | 0 | 1 | 181 | 1 | 181 | 2.07e-125 | 354 |
Find 98 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGAAAGCATGTTATT+AGG | 0.176407 | 4_3:-10160584 | Msa0629280:three_prime_UTR |
| AATTGCCTTTACAAATATTA+TGG | 0.233312 | 4_3:-10160702 | Msa0629280:three_prime_UTR |
| GAATTGAAAGCATGTTATTA+GGG | 0.311610 | 4_3:-10160583 | Msa0629280:three_prime_UTR |
| TTGATCCGTTGTACAAACTA+TGG | 0.313991 | 4_3:-10160611 | Msa0629280:three_prime_UTR |
| AAAATTTAGAAGAAAATAAT+AGG | 0.317551 | 4_3:+10160664 | None:intergenic |
| GGTTCCGTCTCCACTCTGTT+AGG | 0.323873 | 4_3:-10161878 | Msa0629280:CDS |
| TTGTCAAGCATCCAATGTTT+TGG | 0.326410 | 4_3:+10162365 | None:intergenic |
| CTATCCAGATCCACTAATTA+AGG | 0.332244 | 4_3:-10161201 | Msa0629280:CDS |
| GACATATCCCGCTGGTTTCA+TGG | 0.336653 | 4_3:-10162072 | Msa0629280:CDS |
| CAGCGTCATGTTCTTGTTGA+TGG | 0.345107 | 4_3:-10162113 | Msa0629280:CDS |
| TTGGGCAATGTGTTTACTAT+TGG | 0.359690 | 4_3:-10160981 | Msa0629280:CDS |
| GGGAATGTTGTCATGGTTAC+CGG | 0.387189 | 4_3:-10161113 | Msa0629280:CDS |
| GCGGATGGTGCGACCATCAT+AGG | 0.388644 | 4_3:+10161223 | None:intergenic |
| TTGGCCTTAATTAGTGGATC+TGG | 0.396571 | 4_3:+10161197 | None:intergenic |
| GACTTGTGGGGTCCAGATGA+TGG | 0.410304 | 4_3:+10162221 | None:intergenic |
| CATGAGTTTGCCACTCGGTT+GGG | 0.410419 | 4_3:-10160999 | Msa0629280:CDS |
| GTGTCATTGGCCTTAATTAG+TGG | 0.410495 | 4_3:+10161191 | None:intergenic |
| CCGTTGCGTGATGTTTAACA+TGG | 0.430513 | 4_3:-10160636 | Msa0629280:three_prime_UTR |
| CGTTGTACAAACTATGGTTA+AGG | 0.431216 | 4_3:-10160605 | Msa0629280:three_prime_UTR |
| TGGGGTCCAGATGATGGCTT+TGG | 0.432297 | 4_3:+10162227 | None:intergenic |
| TCTAATATATTTCAGGCAAG+AGG | 0.436290 | 4_3:-10162419 | Msa0629280:intron |
| GTCAAGCTTGATGGTGTCAT+TGG | 0.437148 | 4_3:+10161178 | None:intergenic |
| CATTGGATGCTTGACAAACT+TGG | 0.449684 | 4_3:-10162359 | Msa0629280:CDS |
| AAGGCACTCCCTTGACTTGT+GGG | 0.458121 | 4_3:+10162208 | None:intergenic |
| AAAGTTCGATCTGTTCAATT+CGG | 0.459883 | 4_3:-10161272 | Msa0629280:CDS |
| GAGATGAGTTCCGCCGTGGG+TGG | 0.469595 | 4_3:+10163958 | None:intergenic |
| CAGGCACCAAAGCCATCATC+TGG | 0.471057 | 4_3:-10162233 | Msa0629280:CDS |
| TCATGAGTTTGCCACTCGGT+TGG | 0.474930 | 4_3:-10161000 | Msa0629280:CDS |
| CATATTTCAGTCTGTTTCGC+AGG | 0.481155 | 4_3:+10162171 | None:intergenic |
| TCAGTCTGTTTCGCAGGATG+AGG | 0.485002 | 4_3:+10162177 | None:intergenic |
| CAAGAACAGAGAGAAACATA+AGG | 0.485349 | 4_3:-10161060 | Msa0629280:CDS |
| ACCATCATAGGTGTTCAGAT+AGG | 0.491470 | 4_3:+10161235 | None:intergenic |
| ATCTGTTCAATTCGGACAGA+AGG | 0.492212 | 4_3:-10161264 | Msa0629280:CDS |
| TTCTTGTTGATGGCAAGGTT+AGG | 0.493369 | 4_3:-10162103 | Msa0629280:CDS |
| CCCTATCTGAACACCTATGA+TGG | 0.494508 | 4_3:-10161236 | Msa0629280:CDS |
| ACATATCCCGCTGGTTTCAT+GGG | 0.495686 | 4_3:-10162071 | Msa0629280:intron |
| GTTCCGTCTCCACTCTGTTA+GGG | 0.502187 | 4_3:-10161877 | Msa0629280:CDS |
| GTATCTCTTCCCAAGGGAAA+AGG | 0.508790 | 4_3:-10160939 | Msa0629280:CDS |
| TTGGCAAGGGAACAAAGCCT+TGG | 0.509969 | 4_3:-10160962 | Msa0629280:CDS |
| GAAGGCACTCCCTTGACTTG+TGG | 0.511811 | 4_3:+10162207 | None:intergenic |
| CAAGTTGACTGTTATTGAAG+AGG | 0.512862 | 4_3:-10160913 | Msa0629280:CDS |
| GACTCAATGCTCCAAAACAT+TGG | 0.516338 | 4_3:-10162376 | Msa0629280:CDS |
| TGTCACCATAATATTTGTAA+AGG | 0.520224 | 4_3:+10160697 | None:intergenic |
| CCATCATAGGTGTTCAGATA+GGG | 0.524783 | 4_3:+10161236 | None:intergenic |
| CAATGTGTTTACTATTGGCA+AGG | 0.529290 | 4_3:-10160976 | Msa0629280:CDS |
| AGATGAGTTCCGCCGTGGGT+GGG | 0.534034 | 4_3:+10163959 | None:intergenic |
| TCATGTTCTTGTTGATGGCA+AGG | 0.537954 | 4_3:-10162108 | Msa0629280:CDS |
| TGAAGAGGCTAGAAAGAGGC+AGG | 0.540159 | 4_3:-10160898 | Msa0629280:CDS |
| CATCTGGACCCCACAAGTCA+AGG | 0.541796 | 4_3:-10162217 | Msa0629280:CDS |
| CTAATATATTTCAGGCAAGA+GGG | 0.544568 | 4_3:-10162418 | Msa0629280:intron |
| TGGCAAGGGAACAAAGCCTT+GGG | 0.546208 | 4_3:-10160961 | Msa0629280:CDS |
| ACGACCTCTATTCCTTCCTC+CGG | 0.553480 | 4_3:+10161094 | None:intergenic |
| AAGAACAGAGAGAAACATAA+GGG | 0.554158 | 4_3:-10161059 | Msa0629280:CDS |
| GCCTTGGGTATCTCTTCCCA+AGG | 0.555309 | 4_3:-10160946 | Msa0629280:CDS |
| TGATGTGGGGAATGTTGTCA+TGG | 0.557070 | 4_3:-10161120 | Msa0629280:CDS |
| AACATGACGCTGCATCAAGA+TGG | 0.573994 | 4_3:+10162124 | None:intergenic |
| GACCACTTGCATCCTGAACA+TGG | 0.574639 | 4_3:+10161021 | None:intergenic |
| CACATACCCATGAAACCAGC+GGG | 0.579767 | 4_3:+10162065 | None:intergenic |
| TGTTAGGGATGATGAGGCAA+AGG | 0.579828 | 4_3:-10161862 | Msa0629280:intron |
| GTGGAGACGGAACCGACCCT+TGG | 0.581652 | 4_3:+10161887 | None:intergenic |
| TTGTCATGGTTACCGGAGGA+AGG | 0.582711 | 4_3:-10161106 | Msa0629280:CDS |
| TGGATGCTTGACAAACTTGG+TGG | 0.583185 | 4_3:-10162356 | Msa0629280:CDS |
| CATCCCTAACAGAGTGGAGA+CGG | 0.583367 | 4_3:+10161874 | None:intergenic |
| ATCAGAGATGAGTTCCGCCG+TGG | 0.595126 | 4_3:+10163954 | None:intergenic |
| ATCTGGACCCCACAAGTCAA+GGG | 0.597269 | 4_3:-10162216 | Msa0629280:CDS |
| TCTGTTCAATTCGGACAGAA+GGG | 0.598687 | 4_3:-10161263 | Msa0629280:CDS |
| CCACTCTGTTAGGGATGATG+AGG | 0.598797 | 4_3:-10161868 | Msa0629280:CDS |
| AGGCACTCCCTTGACTTGTG+GGG | 0.598802 | 4_3:+10162209 | None:intergenic |
| GTTACCGGAGGAAGGAATAG+AGG | 0.602203 | 4_3:-10161098 | Msa0629280:CDS |
| TTTCGCAGGATGAGGATCAA+AGG | 0.605453 | 4_3:+10162185 | None:intergenic |
| CGTCTTCTGTATGACACCAA+GGG | 0.605611 | 4_3:-10161903 | Msa0629280:CDS |
| TTATTGAAGAGGCTAGAAAG+AGG | 0.605630 | 4_3:-10160902 | Msa0629280:CDS |
| CCGTCTTCTGTATGACACCA+AGG | 0.606098 | 4_3:-10161904 | Msa0629280:CDS |
| CGTTGCGTGATGTTTAACAT+GGG | 0.607124 | 4_3:-10160635 | Msa0629280:three_prime_UTR |
| CCTTGGTGTCATACAGAAGA+CGG | 0.610727 | 4_3:+10161904 | None:intergenic |
| AATGTGTTTACTATTGGCAA+GGG | 0.614045 | 4_3:-10160975 | Msa0629280:CDS |
| TTCAGCTCTGAACCCACCCA+CGG | 0.615966 | 4_3:-10163971 | Msa0629280:five_prime_UTR |
| GGAAGGAATAGAGGTCGTGT+TGG | 0.618743 | 4_3:-10161089 | Msa0629280:CDS |
| GTGGTCATGAGTTTGCCACT+CGG | 0.619011 | 4_3:-10161004 | Msa0629280:CDS |
| CTTAACCATAGTTTGTACAA+CGG | 0.622570 | 4_3:+10160606 | None:intergenic |
| CAAAAGGTAACGAACCATGT+TGG | 0.626237 | 4_3:+10163913 | None:intergenic |
| TTCTGTATGACACCAAGGGT+CGG | 0.629625 | 4_3:-10161899 | Msa0629280:CDS |
| TAGTGGATCTGGATAGCGGA+TGG | 0.630246 | 4_3:+10161208 | None:intergenic |
| TCAGAGATGAGTTCCGCCGT+GGG | 0.640304 | 4_3:+10163955 | None:intergenic |
| AATTGAAAGCATGTTATTAG+GGG | 0.644736 | 4_3:-10160582 | None:intergenic |
| GCAGGATGAGGATCAAAGGA+AGG | 0.644782 | 4_3:+10162189 | None:intergenic |
| TAATTAGTGGATCTGGATAG+CGG | 0.647434 | 4_3:+10161204 | None:intergenic |
| ATCCATGTTCAGGATGCAAG+TGG | 0.648183 | 4_3:-10161023 | Msa0629280:CDS |
| CCATGTTAAACATCACGCAA+CGG | 0.648515 | 4_3:+10160636 | None:intergenic |
| CCCTTGGGAAGAGATACCCA+AGG | 0.659442 | 4_3:+10160945 | None:intergenic |
| CCTCATCATCCCTAACAGAG+TGG | 0.666127 | 4_3:+10161868 | None:intergenic |
| CCTTGGGTATCTCTTCCCAA+GGG | 0.683663 | 4_3:-10160945 | Msa0629280:CDS |
| ACAGACAAGACATATCCCGC+TGG | 0.683859 | 4_3:-10162080 | Msa0629280:CDS |
| AATGTTGTCATGGTTACCGG+AGG | 0.684540 | 4_3:-10161110 | Msa0629280:CDS |
| GCACATACCCATGAAACCAG+CGG | 0.695365 | 4_3:+10162064 | None:intergenic |
| AGCTCTGAACCCACCCACGG+CGG | 0.705960 | 4_3:-10163968 | Msa0629280:five_prime_UTR |
| AAACACATTGCCCAACCGAG+TGG | 0.706925 | 4_3:+10160989 | None:intergenic |
| TTCAGCACAAGACTCCAACA+TGG | 0.710792 | 4_3:-10163927 | Msa0629280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATAAAAAAAATA+TGG | - | chr4_3:10161432-10161451 | Msa0629280:intron | 0.0% |
| !! | AAAAAATAAAAAAAAAAAAA+GGG | + | chr4_3:10163775-10163794 | None:intergenic | 0.0% |
| !! | AAAAAAATAAAAAAAAAAAA+AGG | + | chr4_3:10163776-10163795 | None:intergenic | 0.0% |
| !!! | TGTTTTTCAATAAAAAAAAT+AGG | - | chr4_3:10160767-10160786 | Msa0629280:three_prime_UTR | 10.0% |
| !!! | TTTTTTTCAATTATTTTGTT+TGG | - | chr4_3:10161857-10161876 | Msa0629280:intron | 10.0% |
| !! | AAAAAAAAAAAAAATACAAG+GGG | + | chr4_3:10162767-10162786 | None:intergenic | 10.0% |
| !! | CAAAAAAAAAAAAAATACAA+GGG | + | chr4_3:10162768-10162787 | None:intergenic | 10.0% |
| !! | AAAATTTAGAAGAAAATAAT+AGG | + | chr4_3:10163891-10163910 | None:intergenic | 10.0% |
| !! | AATAAAAAAAATAGGTTTGA+TGG | - | chr4_3:10160775-10160794 | Msa0629280:three_prime_UTR | 15.0% |
| !! | AAAATGTATCATAAAATCTA+GGG | + | chr4_3:10162009-10162028 | None:intergenic | 15.0% |
| !! | TAAAATGTATCATAAAATCT+AGG | + | chr4_3:10162010-10162029 | None:intergenic | 15.0% |
| !! | TAGTTATAAATTAGAATATG+AGG | + | chr4_3:10162112-10162131 | None:intergenic | 15.0% |
| !! | TAGAAAAAAAATTAATCAGT+GGG | + | chr4_3:10162576-10162595 | None:intergenic | 15.0% |
| !! | TTAGAAAAAAAATTAATCAG+TGG | + | chr4_3:10162577-10162596 | None:intergenic | 15.0% |
| !! | GCAAAAAAAAAAAAAATACA+AGG | + | chr4_3:10162769-10162788 | None:intergenic | 15.0% |
| !!! | TTTCTTATATTCTTTCATTT+TGG | - | chr4_3:10163242-10163261 | Msa0629280:intron | 15.0% |
| !! | TCATGTTATGTTATAACATA+TGG | - | chr4_3:10160817-10160836 | Msa0629280:three_prime_UTR | 20.0% |
| !!! | TCAAACAAGGTTTATTATTT+TGG | - | chr4_3:10161486-10161505 | Msa0629280:intron | 20.0% |
| !!! | CAAACAAGGTTTATTATTTT+GGG | - | chr4_3:10161487-10161506 | Msa0629280:intron | 20.0% |
| !! | CAAAAATCAAGAAATCTTTA+TGG | + | chr4_3:10161555-10161574 | None:intergenic | 20.0% |
| !!! | CAACAAAATTTTAGAAAACA+TGG | + | chr4_3:10161686-10161705 | None:intergenic | 20.0% |
| !! | TCTTTCATTGAAAACATTTA+TGG | + | chr4_3:10161753-10161772 | None:intergenic | 20.0% |
| !!! | TTTTGTAACAATGTTTTCAT+TGG | - | chr4_3:10162044-10162063 | Msa0629280:intron | 20.0% |
| !! | TAACTACTCTAATATATTTC+AGG | - | chr4_3:10162126-10162145 | Msa0629280:CDS | 20.0% |
| !! | CTTAAAAAGATCTTAACTTA+CGG | + | chr4_3:10162907-10162926 | None:intergenic | 20.0% |
| !! | ATTGAAATATAGTTATGGTA+AGG | + | chr4_3:10163206-10163225 | None:intergenic | 20.0% |
| !! | GAACAATTGAAATATAGTTA+TGG | + | chr4_3:10163211-10163230 | None:intergenic | 20.0% |
| !! | AATTGCCTTTACAAATATTA+TGG | - | chr4_3:10163850-10163869 | Msa0629280:intron | 20.0% |
| !!! | TCTAATTATTCTGGAACAAA+GGG | + | chr4_3:10161112-10161131 | None:intergenic | 25.0% |
| ! | AATAATTAGACTGTTTCACA+CGG | - | chr4_3:10161122-10161141 | Msa0629280:CDS | 25.0% |
| ! | CACTATTCACATAATATACT+TGG | + | chr4_3:10161459-10161478 | None:intergenic | 25.0% |
| !!! | TGATTTTTGAAATGCAATCT+TGG | - | chr4_3:10161566-10161585 | Msa0629280:intron | 25.0% |
| !! | TTTTTATGTTTCAGTGAGTT+TGG | - | chr4_3:10161590-10161609 | Msa0629280:intron | 25.0% |
| !! | TTTTATGTTTCAGTGAGTTT+GGG | - | chr4_3:10161591-10161610 | Msa0629280:intron | 25.0% |
| ! | ATAGTTATATGTTCTTGACA+TGG | - | chr4_3:10161719-10161738 | Msa0629280:intron | 25.0% |
| ! | TAGTTATATGTTCTTGACAT+GGG | - | chr4_3:10161720-10161739 | Msa0629280:intron | 25.0% |
| !! | TTCTTATTTGACCTCATATA+TGG | - | chr4_3:10161920-10161939 | Msa0629280:CDS | 25.0% |
| ! | AATATAATTCAGATGAAGTG+TGG | + | chr4_3:10162242-10162261 | None:intergenic | 25.0% |
| ! | ATTGAGCATATGAATTCAAA+TGG | + | chr4_3:10162286-10162305 | None:intergenic | 25.0% |
| ! | TTTGAATTCATATGCTCAAT+TGG | - | chr4_3:10162286-10162305 | Msa0629280:intron | 25.0% |
| ! | TTAGAAATTTAACAACACTG+GGG | + | chr4_3:10162531-10162550 | None:intergenic | 25.0% |
| ! | CTTAGAAATTTAACAACACT+GGG | + | chr4_3:10162532-10162551 | None:intergenic | 25.0% |
| ! | ACTTAGAAATTTAACAACAC+TGG | + | chr4_3:10162533-10162552 | None:intergenic | 25.0% |
| !! | GTGTTGTTAAATTTCTAAGT+AGG | - | chr4_3:10162533-10162552 | Msa0629280:intron | 25.0% |
| !! | TAAATTTCTAAGTAGGCTTT+TGG | - | chr4_3:10162540-10162559 | Msa0629280:intron | 25.0% |
| !! | CGTAAGTTAAGATCTTTTTA+AGG | - | chr4_3:10162905-10162924 | Msa0629280:intron | 25.0% |
| !! | TGATTTTATCAAGTTTGATG+TGG | - | chr4_3:10163417-10163436 | Msa0629280:intron | 25.0% |
| !! | GATTTTATCAAGTTTGATGT+GGG | - | chr4_3:10163418-10163437 | Msa0629280:intron | 25.0% |
| !! | ATTTTATCAAGTTTGATGTG+GGG | - | chr4_3:10163419-10163438 | Msa0629280:intron | 25.0% |
| !!! | AAATTGCATTTTTGTTGACT+GGG | - | chr4_3:10163714-10163733 | Msa0629280:intron | 25.0% |
| ! | TGTCACCATAATATTTGTAA+AGG | + | chr4_3:10163858-10163877 | None:intergenic | 25.0% |
| AAAATAGGTTTGATGGAAAG+TGG | - | chr4_3:10160782-10160801 | Msa0629280:three_prime_UTR | 30.0% | |
| ACTCACACATGAAATTACAT+TGG | - | chr4_3:10161003-10161022 | Msa0629280:CDS | 30.0% | |
| CACATGAAATTACATTGGAT+TGG | - | chr4_3:10161008-10161027 | Msa0629280:CDS | 30.0% | |
| !! | GTCTAATTATTCTGGAACAA+AGG | + | chr4_3:10161113-10161132 | None:intergenic | 30.0% |
| GTGAAACAGTCTAATTATTC+TGG | + | chr4_3:10161121-10161140 | None:intergenic | 30.0% | |
| ATAATTAGACTGTTTCACAC+GGG | - | chr4_3:10161123-10161142 | Msa0629280:CDS | 30.0% | |
| TAAATGTCAAAATTGCGCAT+GGG | + | chr4_3:10161326-10161345 | None:intergenic | 30.0% | |
| TTAAATGTCAAAATTGCGCA+TGG | + | chr4_3:10161327-10161346 | None:intergenic | 30.0% | |
| !!! | CAAGGTTTATTATTTTGGGA+TGG | - | chr4_3:10161491-10161510 | Msa0629280:intron | 30.0% |
| ! | CTAAAATCTCAAAGTATCCT+AGG | + | chr4_3:10161637-10161656 | None:intergenic | 30.0% |
| !!! | TGAGATTTTAGAACTTCAGA+AGG | - | chr4_3:10161646-10161665 | Msa0629280:intron | 30.0% |
| !!! | ATTTTAGAACTTCAGAAGGA+TGG | - | chr4_3:10161650-10161669 | Msa0629280:intron | 30.0% |
| AAGAATACAAGCCATATATG+AGG | + | chr4_3:10161934-10161953 | None:intergenic | 30.0% | |
| !! | ATTGGCTTTCTGTAATTGTT+AGG | - | chr4_3:10162062-10162081 | Msa0629280:intron | 30.0% |
| TCTAATATATTTCAGGCAAG+AGG | - | chr4_3:10162133-10162152 | Msa0629280:CDS | 30.0% | |
| CTAATATATTTCAGGCAAGA+GGG | - | chr4_3:10162134-10162153 | Msa0629280:CDS | 30.0% | |
| TGGAACATACAAATAAACAC+AGG | + | chr4_3:10162266-10162285 | None:intergenic | 30.0% | |
| ATTCATATGCTCAATTGGTT+TGG | - | chr4_3:10162291-10162310 | Msa0629280:intron | 30.0% | |
| TAGAAATTTAACAACACTGG+GGG | + | chr4_3:10162530-10162549 | None:intergenic | 30.0% | |
| TTAGGAATAGAAACAACATC+TGG | + | chr4_3:10162613-10162632 | None:intergenic | 30.0% | |
| !! | CGGAAGTTTTCATTTGTTTT+AGG | + | chr4_3:10162631-10162650 | None:intergenic | 30.0% |
| TGAAATTAGAGAGATAGTGA+AGG | + | chr4_3:10162726-10162745 | None:intergenic | 30.0% | |
| ACGATATGCATTGTTAAACA+GGG | + | chr4_3:10162825-10162844 | None:intergenic | 30.0% | |
| TGTCAGTATTTGTACTTCAT+AGG | - | chr4_3:10163077-10163096 | Msa0629280:intron | 30.0% | |
| GTCAGTATTTGTACTTCATA+GGG | - | chr4_3:10163078-10163097 | Msa0629280:intron | 30.0% | |
| AAAGTTCGATCTGTTCAATT+CGG | - | chr4_3:10163280-10163299 | Msa0629280:intron | 30.0% | |
| AAGAACAGAGAGAAACATAA+GGG | - | chr4_3:10163493-10163512 | Msa0629280:intron | 30.0% | |
| AATGTGTTTACTATTGGCAA+GGG | - | chr4_3:10163577-10163596 | Msa0629280:intron | 30.0% | |
| ! | CAAATTGCATTTTTGTTGAC+TGG | - | chr4_3:10163713-10163732 | Msa0629280:intron | 30.0% |
| ! | CTTAACCATAGTTTGTACAA+CGG | + | chr4_3:10163949-10163968 | None:intergenic | 30.0% |
| ! | GGAATTGAAAGCATGTTATT+AGG | - | chr4_3:10163968-10163987 | Msa0629280:five_prime_UTR | 30.0% |
| CTGAGAAATTGAAGAGCAAA+AGG | + | chr4_3:10160658-10160677 | None:intergenic | 35.0% | |
| ATGGAACTGAATAGTGTTGT+TGG | - | chr4_3:10160836-10160855 | Msa0629280:three_prime_UTR | 35.0% | |
| ! | AACTGAATAGTGTTGTTGGA+AGG | - | chr4_3:10160840-10160859 | Msa0629280:three_prime_UTR | 35.0% |
| ACAAAGGGAGTAGTAGTATA+AGG | + | chr4_3:10161097-10161116 | None:intergenic | 35.0% | |
| AATACTTCCATGACATTGCT+TGG | - | chr4_3:10161147-10161166 | Msa0629280:CDS | 35.0% | |
| ATACTTCCATGACATTGCTT+GGG | - | chr4_3:10161148-10161167 | Msa0629280:CDS | 35.0% | |
| GTCGAGATGAATATTTCGAA+TGG | + | chr4_3:10161369-10161388 | None:intergenic | 35.0% | |
| ATAGTGCACATTGTCAAACA+AGG | - | chr4_3:10161473-10161492 | Msa0629280:intron | 35.0% | |
| ! | TGGCTTGTATTCTTTAGCTT+TGG | - | chr4_3:10161940-10161959 | Msa0629280:CDS | 35.0% |
| ! | TTGTCAAGCATCCAATGTTT+TGG | + | chr4_3:10162190-10162209 | None:intergenic | 35.0% |
| TGTGGAAAATGGTCATACAA+AGG | + | chr4_3:10162224-10162243 | None:intergenic | 35.0% | |
| TTCAGATGAAGTGTGGAAAA+TGG | + | chr4_3:10162235-10162254 | None:intergenic | 35.0% | |
| GACGATATGCATTGTTAAAC+AGG | + | chr4_3:10162826-10162845 | None:intergenic | 35.0% | |
| ACAAGTCATTCGTCTATAGT+CGG | + | chr4_3:10162882-10162901 | None:intergenic | 35.0% | |
| ! | AAGTCTTGGATCTAAAGTGT+CGG | + | chr4_3:10162946-10162965 | None:intergenic | 35.0% |
| ! | TAATTAGTGGATCTGGATAG+CGG | + | chr4_3:10163351-10163370 | None:intergenic | 35.0% |
| CTATCCAGATCCACTAATTA+AGG | - | chr4_3:10163351-10163370 | Msa0629280:intron | 35.0% | |
| !!! | CAGTGATCTTGTTGTTTTCA+AGG | + | chr4_3:10163399-10163418 | None:intergenic | 35.0% |
| CAAGAACAGAGAGAAACATA+AGG | - | chr4_3:10163492-10163511 | Msa0629280:intron | 35.0% | |
| !!! | TTTTGAGACTATCCATGTTC+AGG | - | chr4_3:10163519-10163538 | Msa0629280:intron | 35.0% |
| TTGGGCAATGTGTTTACTAT+TGG | - | chr4_3:10163571-10163590 | Msa0629280:intron | 35.0% | |
| CAATGTGTTTACTATTGGCA+AGG | - | chr4_3:10163576-10163595 | Msa0629280:intron | 35.0% | |
| ! | AACTTGATACCTTTTCCCTT+GGG | + | chr4_3:10163625-10163644 | None:intergenic | 35.0% |
| ! | CAAGTTGACTGTTATTGAAG+AGG | - | chr4_3:10163639-10163658 | Msa0629280:intron | 35.0% |
| TTATTGAAGAGGCTAGAAAG+AGG | - | chr4_3:10163650-10163669 | Msa0629280:intron | 35.0% | |
| !!! | TGACTGGGAGGTTTTTTTTT+TGG | - | chr4_3:10163729-10163748 | Msa0629280:intron | 35.0% |
| TTGATCCGTTGTACAAACTA+TGG | - | chr4_3:10163941-10163960 | Msa0629280:five_prime_UTR | 35.0% | |
| CGTTGTACAAACTATGGTTA+AGG | - | chr4_3:10163947-10163966 | Msa0629280:five_prime_UTR | 35.0% | |
| CAAAAGGTAACGAACCATGT+TGG | + | chr4_3:10160642-10160661 | None:intergenic | 40.0% | |
| GTAGCTGCATTGTGCTTATT+AGG | - | chr4_3:10160698-10160717 | Msa0629280:three_prime_UTR | 40.0% | |
| ! | TCCTGCATGTTTTCAACTGT+TGG | - | chr4_3:10160869-10160888 | Msa0629280:exon | 40.0% |
| ACCAACAGTTGAAAACATGC+AGG | + | chr4_3:10160873-10160892 | None:intergenic | 40.0% | |
| ACATCTTCAATCAGAAGGGT+AGG | + | chr4_3:10160923-10160942 | None:intergenic | 40.0% | |
| GGACACATCTTCAATCAGAA+GGG | + | chr4_3:10160927-10160946 | None:intergenic | 40.0% | |
| CTTCTGATTGAAGATGTGTC+CGG | - | chr4_3:10160926-10160945 | Msa0629280:CDS | 40.0% | |
| CAGACACTAACAATGACACA+TGG | + | chr4_3:10160972-10160991 | None:intergenic | 40.0% | |
| ! | TTTGGGATGGAGAGAGTATA+TGG | - | chr4_3:10161504-10161523 | Msa0629280:intron | 40.0% |
| ! | TTGGGATGGAGAGAGTATAT+GGG | - | chr4_3:10161505-10161524 | Msa0629280:intron | 40.0% |
| AGTATATGGGGTTGACTACA+TGG | - | chr4_3:10161518-10161537 | Msa0629280:intron | 40.0% | |
| TCAGTGAGTTTGGGTATGTT+TGG | - | chr4_3:10161600-10161619 | Msa0629280:intron | 40.0% | |
| GTTTGGAAGTCTCAATACCT+AGG | - | chr4_3:10161617-10161636 | Msa0629280:intron | 40.0% | |
| GAGCTCATCTTTATGTCCTA+GGG | - | chr4_3:10161801-10161820 | Msa0629280:intron | 40.0% | |
| TCATCTTTATGTCCTAGGGA+TGG | - | chr4_3:10161805-10161824 | Msa0629280:intron | 40.0% | |
| CATCTTTATGTCCTAGGGAT+GGG | - | chr4_3:10161806-10161825 | Msa0629280:intron | 40.0% | |
| ATCTTTATGTCCTAGGGATG+GGG | - | chr4_3:10161807-10161826 | Msa0629280:intron | 40.0% | |
| GACTCAATGCTCCAAAACAT+TGG | - | chr4_3:10162176-10162195 | Msa0629280:CDS | 40.0% | |
| CATTGGATGCTTGACAAACT+TGG | - | chr4_3:10162193-10162212 | Msa0629280:CDS | 40.0% | |
| CATATTTCAGTCTGTTTCGC+AGG | + | chr4_3:10162384-10162403 | None:intergenic | 40.0% | |
| !! | TCATGTTCTTGTTGATGGCA+AGG | - | chr4_3:10162444-10162463 | Msa0629280:intron | 40.0% |
| !! | TTCTTGTTGATGGCAAGGTT+AGG | - | chr4_3:10162449-10162468 | Msa0629280:intron | 40.0% |
| TCATAGGGTACAAGTCTTCA+AGG | - | chr4_3:10163093-10163112 | Msa0629280:intron | 40.0% | |
| CATAGGGTACAAGTCTTCAA+GGG | - | chr4_3:10163094-10163113 | Msa0629280:intron | 40.0% | |
| AATGTCAGACAGATGCATAC+AGG | - | chr4_3:10163137-10163156 | Msa0629280:intron | 40.0% | |
| ATCTGTTCAATTCGGACAGA+AGG | - | chr4_3:10163288-10163307 | Msa0629280:intron | 40.0% | |
| TCTGTTCAATTCGGACAGAA+GGG | - | chr4_3:10163289-10163308 | Msa0629280:intron | 40.0% | |
| CCATCATAGGTGTTCAGATA+GGG | + | chr4_3:10163319-10163338 | None:intergenic | 40.0% | |
| ACCATCATAGGTGTTCAGAT+AGG | + | chr4_3:10163320-10163339 | None:intergenic | 40.0% | |
| !! | TTGGCCTTAATTAGTGGATC+TGG | + | chr4_3:10163358-10163377 | None:intergenic | 40.0% |
| !! | GTGTCATTGGCCTTAATTAG+TGG | + | chr4_3:10163364-10163383 | None:intergenic | 40.0% |
| !! | GTTTTCAAGGTCAAGCTTGA+TGG | + | chr4_3:10163386-10163405 | None:intergenic | 40.0% |
| ! | CAACTTGATACCTTTTCCCT+TGG | + | chr4_3:10163626-10163645 | None:intergenic | 40.0% |
| !! | TTGCATTTTTGTTGACTGGG+AGG | - | chr4_3:10163717-10163736 | Msa0629280:intron | 40.0% |
| CCATGTTAAACATCACGCAA+CGG | + | chr4_3:10163919-10163938 | None:intergenic | 40.0% | |
| CGTTGCGTGATGTTTAACAT+GGG | - | chr4_3:10163917-10163936 | Msa0629280:intron | 40.0% | |
| TTCAGCACAAGACTCCAACA+TGG | - | chr4_3:10160625-10160644 | Msa0629280:three_prime_UTR | 45.0% | |
| CTTCAATCAGAAGGGTAGGA+GGG | + | chr4_3:10160919-10160938 | None:intergenic | 45.0% | |
| TCTTCAATCAGAAGGGTAGG+AGG | + | chr4_3:10160920-10160939 | None:intergenic | 45.0% | |
| CGGACACATCTTCAATCAGA+AGG | + | chr4_3:10160928-10160947 | None:intergenic | 45.0% | |
| CGCTAACATGTGTTAGACAC+CGG | + | chr4_3:10160948-10160967 | None:intergenic | 45.0% | |
| GATTGCATCAATGGCACCAA+TGG | + | chr4_3:10161176-10161195 | None:intergenic | 45.0% | |
| CACCCATCAACACACATCAA+CGG | + | chr4_3:10161203-10161222 | None:intergenic | 45.0% | |
| ! | TTGATGTGTGTTGATGGGTG+TGG | - | chr4_3:10161203-10161222 | Msa0629280:CDS | 45.0% |
| ! | TGATGTGTGTTGATGGGTGT+GGG | - | chr4_3:10161204-10161223 | Msa0629280:CDS | 45.0% |
| !! | TTGTGTGTCATTGGTGCCAT+TGG | + | chr4_3:10161269-10161288 | None:intergenic | 45.0% |
| GCACCAATGACACACAACTA+TGG | - | chr4_3:10161272-10161291 | Msa0629280:CDS | 45.0% | |
| GTGCCATAGTTGTGTGTCAT+TGG | + | chr4_3:10161278-10161297 | None:intergenic | 45.0% | |
| ACACAACTATGGCACCAAAG+TGG | - | chr4_3:10161283-10161302 | Msa0629280:CDS | 45.0% | |
| ! | TGGGATGGAGAGAGTATATG+GGG | - | chr4_3:10161506-10161525 | Msa0629280:intron | 45.0% |
| CGAGCTCATCTTTATGTCCT+AGG | - | chr4_3:10161800-10161819 | Msa0629280:intron | 45.0% | |
| ACTAACATATCCCCATCCCT+AGG | + | chr4_3:10161820-10161839 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAACTTGG+TGG | - | chr4_3:10162196-10162215 | Msa0629280:CDS | 45.0% | |
| !! | CTCAATTGGTTTGGATGTGC+AGG | - | chr4_3:10162300-10162319 | Msa0629280:intron | 45.0% |
| TTTCGCAGGATGAGGATCAA+AGG | + | chr4_3:10162370-10162389 | None:intergenic | 45.0% | |
| AACATGACGCTGCATCAAGA+TGG | + | chr4_3:10162431-10162450 | None:intergenic | 45.0% | |
| CAGCGTCATGTTCTTGTTGA+TGG | - | chr4_3:10162439-10162458 | Msa0629280:intron | 45.0% | |
| !! | ACATATCCCGCTGGTTTCAT+GGG | - | chr4_3:10162481-10162500 | Msa0629280:intron | 45.0% |
| !! | CCTTGGTGTCATACAGAAGA+CGG | + | chr4_3:10162651-10162670 | None:intergenic | 45.0% |
| CGTCTTCTGTATGACACCAA+GGG | - | chr4_3:10162649-10162668 | Msa0629280:intron | 45.0% | |
| TTCTGTATGACACCAAGGGT+CGG | - | chr4_3:10162653-10162672 | Msa0629280:intron | 45.0% | |
| TGTTAGGGATGATGAGGCAA+AGG | - | chr4_3:10162690-10162709 | Msa0629280:intron | 45.0% | |
| ACTCACTCACACACTGCTTA+AGG | - | chr4_3:10162846-10162865 | Msa0629280:intron | 45.0% | |
| CTCACTCACACACTGCTTAA+GGG | - | chr4_3:10162847-10162866 | Msa0629280:intron | 45.0% | |
| ATACTGACACAGACACGACA+TGG | + | chr4_3:10163066-10163085 | None:intergenic | 45.0% | |
| CCCTATCTGAACACCTATGA+TGG | - | chr4_3:10163316-10163335 | Msa0629280:intron | 45.0% | |
| !! | GTCAAGCTTGATGGTGTCAT+TGG | + | chr4_3:10163377-10163396 | None:intergenic | 45.0% |
| TGATGTGGGGAATGTTGTCA+TGG | - | chr4_3:10163432-10163451 | Msa0629280:intron | 45.0% | |
| GGGAATGTTGTCATGGTTAC+CGG | - | chr4_3:10163439-10163458 | Msa0629280:intron | 45.0% | |
| AATGTTGTCATGGTTACCGG+AGG | - | chr4_3:10163442-10163461 | Msa0629280:intron | 45.0% | |
| ATCCATGTTCAGGATGCAAG+TGG | - | chr4_3:10163529-10163548 | Msa0629280:intron | 45.0% | |
| GTATCTCTTCCCAAGGGAAA+AGG | - | chr4_3:10163613-10163632 | Msa0629280:intron | 45.0% | |
| CCGTTGCGTGATGTTTAACA+TGG | - | chr4_3:10163916-10163935 | Msa0629280:intron | 45.0% | |
| ! | GCCGTCTTTTTGTGTCGTGT+CGG | - | chr4_3:10161036-10161055 | Msa0629280:CDS | 50.0% |
| CCCGACACGACACAAAAAGA+CGG | + | chr4_3:10161040-10161059 | None:intergenic | 50.0% | |
| ! | CCGTCTTTTTGTGTCGTGTC+GGG | - | chr4_3:10161037-10161056 | Msa0629280:CDS | 50.0% |
| ATGGCACCCAAGCAATGTCA+TGG | + | chr4_3:10161157-10161176 | None:intergenic | 50.0% | |
| ! | TGACATTGCTTGGGTGCCAT+TGG | - | chr4_3:10161157-10161176 | Msa0629280:CDS | 50.0% |
| !! | TGGTGCCATTGATGCAATCC+TGG | - | chr4_3:10161177-10161196 | Msa0629280:CDS | 50.0% |
| AACGGCCAGGATTGCATCAA+TGG | + | chr4_3:10161185-10161204 | None:intergenic | 50.0% | |
| ATCAACACACATCAACGGCC+AGG | + | chr4_3:10161198-10161217 | None:intergenic | 50.0% | |
| TGGCCGTTGATGTGTGTTGA+TGG | - | chr4_3:10161197-10161216 | Msa0629280:CDS | 50.0% | |
| ! | GGCCGTTGATGTGTGTTGAT+GGG | - | chr4_3:10161198-10161217 | Msa0629280:CDS | 50.0% |
| ! | GATGTGTGTTGATGGGTGTG+GGG | - | chr4_3:10161205-10161224 | Msa0629280:CDS | 50.0% |
| GTGTGTGATGTGTGTGTGTG+TGG | - | chr4_3:10161232-10161251 | Msa0629280:CDS | 50.0% | |
| TGTGATGTGTGTGTGTGTGG+TGG | - | chr4_3:10161235-10161254 | Msa0629280:CDS | 50.0% | |
| ! | TGTGGTGGAGATGACACCAA+TGG | - | chr4_3:10161250-10161269 | Msa0629280:CDS | 50.0% |
| ! | GTGTGAAACGGGTTCCACTT+TGG | + | chr4_3:10161300-10161319 | None:intergenic | 50.0% |
| ATCTGGACCCCACAAGTCAA+GGG | - | chr4_3:10162336-10162355 | Msa0629280:intron | 50.0% | |
| !! | AAGGCACTCCCTTGACTTGT+GGG | + | chr4_3:10162347-10162366 | None:intergenic | 50.0% |
| GCAGGATGAGGATCAAAGGA+AGG | + | chr4_3:10162366-10162385 | None:intergenic | 50.0% | |
| TCAGTCTGTTTCGCAGGATG+AGG | + | chr4_3:10162378-10162397 | None:intergenic | 50.0% | |
| ACAGACAAGACATATCCCGC+TGG | - | chr4_3:10162472-10162491 | Msa0629280:intron | 50.0% | |
| !! | GACATATCCCGCTGGTTTCA+TGG | - | chr4_3:10162480-10162499 | Msa0629280:intron | 50.0% |
| CACATACCCATGAAACCAGC+GGG | + | chr4_3:10162490-10162509 | None:intergenic | 50.0% | |
| GCACATACCCATGAAACCAG+CGG | + | chr4_3:10162491-10162510 | None:intergenic | 50.0% | |
| CCGTCTTCTGTATGACACCA+AGG | - | chr4_3:10162648-10162667 | Msa0629280:intron | 50.0% | |
| GTTCCGTCTCCACTCTGTTA+GGG | - | chr4_3:10162675-10162694 | Msa0629280:intron | 50.0% | |
| CATCCCTAACAGAGTGGAGA+CGG | + | chr4_3:10162681-10162700 | None:intergenic | 50.0% | |
| CCTCATCATCCCTAACAGAG+TGG | + | chr4_3:10162687-10162706 | None:intergenic | 50.0% | |
| CCACTCTGTTAGGGATGATG+AGG | - | chr4_3:10162684-10162703 | Msa0629280:intron | 50.0% | |
| TCACGTGTCTGGACAAGTCT+TGG | + | chr4_3:10162960-10162979 | None:intergenic | 50.0% | |
| !! | TAGTGGATCTGGATAGCGGA+TGG | + | chr4_3:10163347-10163366 | None:intergenic | 50.0% |
| TTGTCATGGTTACCGGAGGA+AGG | - | chr4_3:10163446-10163465 | Msa0629280:intron | 50.0% | |
| GTTACCGGAGGAAGGAATAG+AGG | - | chr4_3:10163454-10163473 | Msa0629280:intron | 50.0% | |
| ACGACCTCTATTCCTTCCTC+CGG | + | chr4_3:10163461-10163480 | None:intergenic | 50.0% | |
| GGAAGGAATAGAGGTCGTGT+TGG | - | chr4_3:10163463-10163482 | Msa0629280:intron | 50.0% | |
| GACCACTTGCATCCTGAACA+TGG | + | chr4_3:10163534-10163553 | None:intergenic | 50.0% | |
| GTGGTCATGAGTTTGCCACT+CGG | - | chr4_3:10163548-10163567 | Msa0629280:intron | 50.0% | |
| TCATGAGTTTGCCACTCGGT+TGG | - | chr4_3:10163552-10163571 | Msa0629280:intron | 50.0% | |
| CATGAGTTTGCCACTCGGTT+GGG | - | chr4_3:10163553-10163572 | Msa0629280:intron | 50.0% | |
| AAACACATTGCCCAACCGAG+TGG | + | chr4_3:10163566-10163585 | None:intergenic | 50.0% | |
| TTGGCAAGGGAACAAAGCCT+TGG | - | chr4_3:10163590-10163609 | Msa0629280:intron | 50.0% | |
| TGGCAAGGGAACAAAGCCTT+GGG | - | chr4_3:10163591-10163610 | Msa0629280:intron | 50.0% | |
| CCTTGGGTATCTCTTCCCAA+GGG | - | chr4_3:10163607-10163626 | Msa0629280:intron | 50.0% | |
| TGAAGAGGCTAGAAAGAGGC+AGG | - | chr4_3:10163654-10163673 | Msa0629280:intron | 50.0% | |
| TCAGAGATGAGTTCCGCCGT+GGG | + | chr4_3:10160600-10160619 | None:intergenic | 55.0% | |
| ATCAGAGATGAGTTCCGCCG+TGG | + | chr4_3:10160601-10160620 | None:intergenic | 55.0% | |
| CGCATGGGCATGTGTGAAAC+GGG | + | chr4_3:10161311-10161330 | None:intergenic | 55.0% | |
| GCGCATGGGCATGTGTGAAA+CGG | + | chr4_3:10161312-10161331 | None:intergenic | 55.0% | |
| CAGGCACCAAAGCCATCATC+TGG | - | chr4_3:10162319-10162338 | Msa0629280:intron | 55.0% | |
| ! | TGGGGTCCAGATGATGGCTT+TGG | + | chr4_3:10162328-10162347 | None:intergenic | 55.0% |
| GACTTGTGGGGTCCAGATGA+TGG | + | chr4_3:10162334-10162353 | None:intergenic | 55.0% | |
| CATCTGGACCCCACAAGTCA+AGG | - | chr4_3:10162335-10162354 | Msa0629280:intron | 55.0% | |
| !! | AGGCACTCCCTTGACTTGTG+GGG | + | chr4_3:10162346-10162365 | None:intergenic | 55.0% |
| !! | GAAGGCACTCCCTTGACTTG+TGG | + | chr4_3:10162348-10162367 | None:intergenic | 55.0% |
| GGTTCCGTCTCCACTCTGTT+AGG | - | chr4_3:10162674-10162693 | Msa0629280:intron | 55.0% | |
| ACAGACGCATGTCACGTGTC+TGG | + | chr4_3:10162971-10162990 | None:intergenic | 55.0% | |
| GCCTTGGGTATCTCTTCCCA+AGG | - | chr4_3:10163606-10163625 | Msa0629280:intron | 55.0% | |
| CCCTTGGGAAGAGATACCCA+AGG | + | chr4_3:10163610-10163629 | None:intergenic | 55.0% | |
| AGATGAGTTCCGCCGTGGGT+GGG | + | chr4_3:10160596-10160615 | None:intergenic | 60.0% | |
| GCGGATGGTGCGACCATCAT+AGG | + | chr4_3:10163332-10163351 | None:intergenic | 60.0% | |
| !! | AGCTCTGAACCCACCCACGG+CGG | - | chr4_3:10160584-10160603 | Msa0629280:three_prime_UTR | 65.0% |
| GAGATGAGTTCCGCCGTGGG+TGG | + | chr4_3:10160597-10160616 | None:intergenic | 65.0% | |
| GTGGAGACGGAACCGACCCT+TGG | + | chr4_3:10162668-10162687 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 10160583 | 10163991 | 10160583 | ID=Msa0629280;Name=Msa0629280 |
| chr4_3 | mRNA | 10160583 | 10163991 | 10160583 | ID=Msa0629280-mRNA-1;Parent=Msa0629280;Name=Msa0629280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=61|1|1|1|0.75|0.8|5|289|264 |
| chr4_3 | exon | 10160583 | 10161306 | 10160583 | ID=Msa0629280-mRNA-1:exon:3064;Parent=Msa0629280-mRNA-1 |
| chr4_3 | exon | 10161863 | 10161960 | 10161863 | ID=Msa0629280-mRNA-1:exon:3063;Parent=Msa0629280-mRNA-1 |
| chr4_3 | exon | 10162072 | 10162252 | 10162072 | ID=Msa0629280-mRNA-1:exon:3062;Parent=Msa0629280-mRNA-1 |
| chr4_3 | exon | 10162349 | 10162426 | 10162349 | ID=Msa0629280-mRNA-1:exon:3061;Parent=Msa0629280-mRNA-1 |
| chr4_3 | exon | 10163928 | 10163991 | 10163928 | ID=Msa0629280-mRNA-1:exon:3060;Parent=Msa0629280-mRNA-1 |
| chr4_3 | five_prime_UTR | 10163931 | 10163991 | 10163931 | ID=Msa0629280-mRNA-1:five_prime_utr;Parent=Msa0629280-mRNA-1 |
| chr4_3 | CDS | 10163928 | 10163930 | 10163928 | ID=Msa0629280-mRNA-1:cds;Parent=Msa0629280-mRNA-1 |
| chr4_3 | CDS | 10162349 | 10162426 | 10162349 | ID=Msa0629280-mRNA-1:cds;Parent=Msa0629280-mRNA-1 |
| chr4_3 | CDS | 10162072 | 10162252 | 10162072 | ID=Msa0629280-mRNA-1:cds;Parent=Msa0629280-mRNA-1 |
| chr4_3 | CDS | 10161863 | 10161960 | 10161863 | ID=Msa0629280-mRNA-1:cds;Parent=Msa0629280-mRNA-1 |
| chr4_3 | CDS | 10160872 | 10161306 | 10160872 | ID=Msa0629280-mRNA-1:cds;Parent=Msa0629280-mRNA-1 |
| chr4_3 | three_prime_UTR | 10160583 | 10160871 | 10160583 | ID=Msa0629280-mRNA-1:three_prime_utr;Parent=Msa0629280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
