AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435390 MtrunA17_Chr3g0142331 86.282 277 9 1 1 248 117 393 1.15e-164 461
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435390 AT4G29860.1 64.977 217 74 1 32 246 166 382 2.88e-105 310

Find 69 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTTAAGGTTGAAATT+TGG 0.157257 3_2:-88535702 Msa0435390:intron
TGATATTAGTATGATGTATT+AGG 0.234191 3_2:-88530378 Msa0435390:three_prime_UTR
ACACGTCTCCCTTCAAATAT+TGG 0.280177 3_2:-88535655 Msa0435390:CDS
CTATCATATGTGGCTTTGTC+GGG 0.310446 3_2:-88535813 Msa0435390:CDS
TGGAATTTCACAGAACTTAC+TGG 0.315860 3_2:+88532162 None:intergenic
TATGAGCCTCTTCTGTTTCA+AGG 0.331258 3_2:+88536590 None:intergenic
ATTGTTTAAGGTTGAAATTT+GGG 0.336934 3_2:-88535701 Msa0435390:intron
TTCGTCTGATTGTAAACTTA+TGG 0.343925 3_2:-88530457 Msa0435390:CDS
TCATACTAATATCATGTTCT+TGG 0.349256 3_2:+88530387 None:intergenic
CAACTGCTGGCTGGGACCAC+AGG 0.361390 3_2:-88531058 Msa0435390:intron
GGCAAAATTGCTGCAACTGC+TGG 0.372442 3_2:-88531071 Msa0435390:CDS
GATATTAGTATGATGTATTA+GGG 0.415849 3_2:-88530377 Msa0435390:three_prime_UTR
GCTATCATATGTGGCTTTGT+CGG 0.422647 3_2:-88535814 Msa0435390:CDS
AAATTGCTGCAACTGCTGGC+TGG 0.431609 3_2:-88531067 Msa0435390:CDS
TTGGAGCGACCTGGCATCTC+AGG 0.432105 3_2:-88531113 Msa0435390:CDS
CAGCTAAGGCGTTTCCTTTG+CGG 0.433322 3_2:+88530653 None:intergenic
GTGAAATTCCATTCTGAGCC+AGG 0.437622 3_2:-88532150 Msa0435390:intron
TGGTGGGATGTACGGAATCC+TGG 0.454971 3_2:-88532189 Msa0435390:CDS
CAGAGTACGGGGTCAAAAGC+AGG 0.457854 3_2:-88536631 Msa0435390:CDS
AGTTGTTCTGAAAGCTCTGA+AGG 0.466718 3_2:-88536559 Msa0435390:intron
AATTGCTGCAACTGCTGGCT+GGG 0.467224 3_2:-88531066 Msa0435390:CDS
GTACAGCTTGGATCATTCTT+CGG 0.473747 3_2:-88531976 Msa0435390:intron
TACTAATATCATGTTCTTGG+AGG 0.491008 3_2:+88530390 None:intergenic
TCTTCAATTGTTAGCAGCAA+AGG 0.493130 3_2:-88535625 Msa0435390:intron
CCATGCTTTGGTGGGATGTA+CGG 0.494219 3_2:-88532197 Msa0435390:CDS
GTATTGACGGATCTTGCAAA+GGG 0.501644 3_2:-88532034 Msa0435390:CDS
GAGTTACTACCAATATTTGA+AGG 0.504307 3_2:+88535646 None:intergenic
GGCATCTCAATTCGGCCTGA+TGG 0.506609 3_2:-88531092 Msa0435390:CDS
ACAGAACTTACTGGAACTCC+AGG 0.506661 3_2:+88532171 None:intergenic
ATGAAGATGGTACCATGCTT+TGG 0.521156 3_2:-88532209 Msa0435390:CDS
GCATCTCAGGCATCTCAATT+CGG 0.527846 3_2:-88531100 Msa0435390:CDS
CATGGCTAAGAATCAGAGTA+CGG 0.527885 3_2:-88536644 Msa0435390:CDS
CAATTAAGGGCTATCATATG+TGG 0.530557 3_2:-88535823 Msa0435390:intron
TATCATATGTGGCTTTGTCG+GGG 0.531270 3_2:-88535812 Msa0435390:CDS
GTTCTGAGCATTGGTATTGA+CGG 0.538890 3_2:-88532047 Msa0435390:CDS
ATTGAGATGCCTGAGATGCC+AGG 0.543183 3_2:+88531104 None:intergenic
ATGGCTAAGAATCAGAGTAC+GGG 0.543954 3_2:-88536643 Msa0435390:CDS
TGCATCTGCCGACACAATGG+TGG 0.557660 3_2:-88530430 Msa0435390:CDS
GGTATTGACGGATCTTGCAA+AGG 0.560279 3_2:-88532035 Msa0435390:CDS
CGACACAATGGTGGCGCTGT+GGG 0.564576 3_2:-88530421 Msa0435390:CDS
TGTCGATACCTGGCTCAGAA+TGG 0.564737 3_2:+88532142 None:intergenic
ATGATACTTAAGTACAGCTA+AGG 0.567428 3_2:+88530639 None:intergenic
AGGATATATAATTACCGCAA+AGG 0.569818 3_2:-88530667 Msa0435390:CDS
AGAGTACGGGGTCAAAAGCA+GGG 0.576846 3_2:-88536630 Msa0435390:CDS
GAAATCACATTGGAGCGACC+TGG 0.577804 3_2:-88531122 Msa0435390:CDS
CTCTGCATCTGCCGACACAA+TGG 0.579223 3_2:-88530433 Msa0435390:CDS
CATTGTGTCGGCAGATGCAG+AGG 0.583387 3_2:+88530434 None:intergenic
TTTCTTGTCAGGCATGTGCA+TGG 0.585675 3_2:-88535240 Msa0435390:intron
AAGTGTTGTAGATATGAAGA+TGG 0.590005 3_2:-88532222 Msa0435390:intron
AAGATGGTACCATGCTTTGG+TGG 0.590770 3_2:-88532206 Msa0435390:CDS
TACGGGGTCAAAAGCAGGGG+AGG 0.593678 3_2:-88536626 Msa0435390:CDS
GAGTACGGGGTCAAAAGCAG+GGG 0.597141 3_2:-88536629 Msa0435390:CDS
TCTCGGGAGCTGCAGATGAG+AGG 0.598112 3_2:-88532007 Msa0435390:CDS
TTTACCTTAGGGTACATGTG+TGG 0.601199 3_2:-88531153 Msa0435390:intron
TGTGTACCATCTGAATCTCA+AGG 0.602729 3_2:-88535206 Msa0435390:CDS
CGTACTCTGATTCTTAGCCA+TGG 0.608659 3_2:+88536645 None:intergenic
CCACAGCGCCACCATTGTGT+CGG 0.609267 3_2:+88530422 None:intergenic
ATCATATGTGGCTTTGTCGG+GGG 0.609638 3_2:-88535811 Msa0435390:CDS
AGTTACTACCAATATTTGAA+GGG 0.610741 3_2:+88535647 None:intergenic
AGATTGCCTTGAAACAGAAG+AGG 0.618951 3_2:-88536596 Msa0435390:CDS
CCGACACAATGGTGGCGCTG+TGG 0.629692 3_2:-88530422 Msa0435390:CDS
GAGGATTGTGATGTACAGCT+TGG 0.629834 3_2:-88531988 Msa0435390:CDS
CCGTACATCCCACCAAAGCA+TGG 0.636894 3_2:+88532197 None:intergenic
GGTCAATAAAGAAATCACAT+TGG 0.651588 3_2:-88531132 Msa0435390:CDS
ATTGACGGATCTTGCAAAGG+GGG 0.652410 3_2:-88532032 Msa0435390:CDS
AGATGGTACCATGCTTTGGT+GGG 0.687336 3_2:-88532205 Msa0435390:CDS
ACTTAAGTATCATCATGCCA+CGG 0.698852 3_2:-88530629 Msa0435390:intron
TGGCTAAGAATCAGAGTACG+GGG 0.711382 3_2:-88536642 Msa0435390:CDS
TATTGACGGATCTTGCAAAG+GGG 0.721177 3_2:-88532033 Msa0435390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAATAAATTTTATACTA+TGG + chr3_2:88533344-88533363 None:intergenic 10.0%
!! AAACATTTGAAGAATATAAA+AGG + chr3_2:88530999-88531018 None:intergenic 15.0%
!! ACATAATATTGTTAACAAAA+AGG + chr3_2:88531060-88531079 None:intergenic 15.0%
!! AACAATATTATGTACAATTA+AGG - chr3_2:88531067-88531086 Msa0435390:CDS 15.0%
!! ACAATATTATGTACAATTAA+GGG - chr3_2:88531068-88531087 Msa0435390:CDS 15.0%
!! TAATATTTAAATCAGACAAA+CGG + chr3_2:88532701-88532720 None:intergenic 15.0%
!! TTGAAAAGAATCTTATAAAA+AGG - chr3_2:88533497-88533516 Msa0435390:intron 15.0%
!! TGAAAAGAATCTTATAAAAA+GGG - chr3_2:88533498-88533517 Msa0435390:intron 15.0%
!!! AAATATTTTTTATGGAAATC+TGG - chr3_2:88534059-88534078 Msa0435390:intron 15.0%
!!! AATATTTTTTATGGAAATCT+GGG - chr3_2:88534060-88534079 Msa0435390:intron 15.0%
!!! CTTAAAGATATTTTTAATGT+GGG + chr3_2:88534516-88534535 None:intergenic 15.0%
!!! ACTTAAAGATATTTTTAATG+TGG + chr3_2:88534517-88534536 None:intergenic 15.0%
!!! TGAATATATTATCTTTTTAG+AGG + chr3_2:88535193-88535212 None:intergenic 15.0%
!! AAGATTTATTAAGTAAACTA+AGG - chr3_2:88535489-88535508 Msa0435390:intron 15.0%
!!! TTTTACACATCAAAGAATAT+GGG - chr3_2:88530774-88530793 Msa0435390:intron 20.0%
!! AATAACAAAATTCTTAGACT+TGG - chr3_2:88530804-88530823 Msa0435390:intron 20.0%
!! TAATATTGTTAACAAAAAGG+TGG + chr3_2:88531057-88531076 None:intergenic 20.0%
!!! ATTGTTTAAGGTTGAAATTT+GGG - chr3_2:88531203-88531222 Msa0435390:intron 20.0%
!! TGAGAATTTCAAAAAAATGA+TGG + chr3_2:88531345-88531364 None:intergenic 20.0%
!! AGAAAATATAACCAAAGAAT+GGG + chr3_2:88531622-88531641 None:intergenic 20.0%
!!! TTCTATTTATTTTGGTAACT+AGG + chr3_2:88532337-88532356 None:intergenic 20.0%
!!! CTCAATACTTCTATTTATTT+TGG + chr3_2:88532345-88532364 None:intergenic 20.0%
!! AAATCAGAGAAAAAGAAAAA+AGG - chr3_2:88532535-88532554 Msa0435390:intron 20.0%
!!! AATGGATAGATTTGATTTAA+GGG - chr3_2:88532566-88532585 Msa0435390:intron 20.0%
!! AATATTTAAATCAGACAAAC+GGG + chr3_2:88532700-88532719 None:intergenic 20.0%
!! ACTTAGTTTAAACTCAAATA+TGG - chr3_2:88532768-88532787 Msa0435390:intron 20.0%
!! ACATAAATCTAATACAATGT+AGG + chr3_2:88533045-88533064 None:intergenic 20.0%
!!! AATCAAACTTTTGAAACAAT+AGG - chr3_2:88533639-88533658 Msa0435390:intron 20.0%
!! AAATAAAAAATGACAGAATG+TGG + chr3_2:88533671-88533690 None:intergenic 20.0%
!!! AGGAGCTTAAATATTTTTTA+TGG - chr3_2:88534051-88534070 Msa0435390:intron 20.0%
!! CTTTATTAATTAATGTTGTC+AGG - chr3_2:88534550-88534569 Msa0435390:intron 20.0%
!! ACACATTTATATTACAAATC+AGG + chr3_2:88534620-88534639 None:intergenic 20.0%
!! TGAAAATAATGAGTAATCTA+AGG + chr3_2:88534802-88534821 None:intergenic 20.0%
!! GGAATACAGATAAAAATTAT+AGG + chr3_2:88534999-88535018 None:intergenic 20.0%
!!! ATCATAGTTTTATTCTAAGA+AGG + chr3_2:88535020-88535039 None:intergenic 20.0%
!! TAAGTTTGACTATTGAAATA+AGG + chr3_2:88535073-88535092 None:intergenic 20.0%
!! ACATTAACAACAACTAATTA+TGG + chr3_2:88535928-88535947 None:intergenic 20.0%
!! AATGTAGGAGAAAAAAAAAA+GGG + chr3_2:88536117-88536136 None:intergenic 20.0%
!! TAATGTAGGAGAAAAAAAAA+AGG + chr3_2:88536118-88536137 None:intergenic 20.0%
!! TTGAAACAATACATCATTAT+TGG - chr3_2:88536339-88536358 Msa0435390:intron 20.0%
!! TGATATTAGTATGATGTATT+AGG - chr3_2:88536526-88536545 Msa0435390:intron 20.0%
!! GATATTAGTATGATGTATTA+GGG - chr3_2:88536527-88536546 Msa0435390:intron 20.0%
!!! AGAACTTTTGAAACTTGTTA+CGG - chr3_2:88530400-88530419 Msa0435390:CDS 25.0%
!!! TAAATTTACTGATTTACTGC+TGG + chr3_2:88530688-88530707 None:intergenic 25.0%
! GCAGTAAATCAGTAAATTTA+AGG - chr3_2:88530688-88530707 Msa0435390:intron 25.0%
!! CTTTTACACATCAAAGAATA+TGG - chr3_2:88530773-88530792 Msa0435390:intron 25.0%
! TAAAAGGAAACAACATAGAA+AGG + chr3_2:88530983-88531002 None:intergenic 25.0%
!! CATTGTTTAAGGTTGAAATT+TGG - chr3_2:88531202-88531221 Msa0435390:intron 25.0%
! AGTTACTACCAATATTTGAA+GGG + chr3_2:88531260-88531279 None:intergenic 25.0%
! AGAATGCAAACATCAATTTA+AGG + chr3_2:88531522-88531541 None:intergenic 25.0%
! GAGAAAATATAACCAAAGAA+TGG + chr3_2:88531623-88531642 None:intergenic 25.0%
!! TCAAGGATTTTTAAATGTCA+TGG - chr3_2:88531715-88531734 Msa0435390:intron 25.0%
! CAATATTGGAAGTTACTTAA+GGG - chr3_2:88531952-88531971 Msa0435390:intron 25.0%
! AATATTGGAAGTTACTTAAG+GGG - chr3_2:88531953-88531972 Msa0435390:intron 25.0%
! CATTTCTCAAAAGAAATGAA+GGG - chr3_2:88532022-88532041 Msa0435390:CDS 25.0%
! GTCATTAAATTCATGTAGAT+TGG - chr3_2:88532240-88532259 Msa0435390:intron 25.0%
!! TTGGTAACTAGGTAAAATAT+TGG + chr3_2:88532326-88532345 None:intergenic 25.0%
!! AAAATTTTATCTTTCTCCCT+TGG - chr3_2:88532421-88532440 Msa0435390:intron 25.0%
!! AAATTTTATCTTTCTCCCTT+GGG - chr3_2:88532422-88532441 Msa0435390:intron 25.0%
!!! TTTTCTCTGATTTTTTTCGA+AGG + chr3_2:88532528-88532547 None:intergenic 25.0%
!! AGAAAAAAGGCATAATAGAA+TGG - chr3_2:88532548-88532567 Msa0435390:intron 25.0%
!! GAATGGATAGATTTGATTTA+AGG - chr3_2:88532565-88532584 Msa0435390:intron 25.0%
! ATATTTAAATCAGACAAACG+GGG + chr3_2:88532699-88532718 None:intergenic 25.0%
!!! AATATTATTTTTCACCAGCT+TGG - chr3_2:88532714-88532733 Msa0435390:intron 25.0%
! AATCTAATACAATGTAGGTA+TGG + chr3_2:88533040-88533059 None:intergenic 25.0%
! ACAACGAAATTCTGTATTTA+GGG + chr3_2:88533294-88533313 None:intergenic 25.0%
! AAAATATGCAACATAGTTAG+AGG - chr3_2:88533438-88533457 Msa0435390:intron 25.0%
! AAGTAGTAAGTAATAACTGT+CGG - chr3_2:88533561-88533580 Msa0435390:intron 25.0%
!! GGTTCAAATTTTGTTACTAA+TGG + chr3_2:88533590-88533609 None:intergenic 25.0%
! ATTATAAACCTTCCAAATTC+TGG - chr3_2:88533696-88533715 Msa0435390:intron 25.0%
! TTATAAACCTTCCAAATTCT+GGG - chr3_2:88533697-88533716 Msa0435390:intron 25.0%
! AAAAAATTGGTTAGAGTTTG+TGG - chr3_2:88533959-88533978 Msa0435390:intron 25.0%
! ATTAATTAATGTTGTCAGGT+AGG - chr3_2:88534554-88534573 Msa0435390:intron 25.0%
! TTAATTAATGTTGTCAGGTA+GGG - chr3_2:88534555-88534574 Msa0435390:intron 25.0%
! ATCTACAACACTTAGAAAAA+AGG + chr3_2:88534675-88534694 None:intergenic 25.0%
!! CTCTGGTTATCTTATTTATA+TGG - chr3_2:88535135-88535154 Msa0435390:intron 25.0%
! TATGGTATTTGATTCTTAGA+TGG - chr3_2:88535153-88535172 Msa0435390:intron 25.0%
!!! GATTCTTAGATGGATTAAAA+TGG - chr3_2:88535163-88535182 Msa0435390:intron 25.0%
! TATTGTGTAATTACAGTTGA+AGG - chr3_2:88535226-88535245 Msa0435390:CDS 25.0%
! ATTGTGTAATTACAGTTGAA+GGG - chr3_2:88535227-88535246 Msa0435390:CDS 25.0%
!! TTTTTACCCATAATGATAAC+AGG - chr3_2:88535411-88535430 Msa0435390:intron 25.0%
!! CCAAATTTTGAACATTTGAA+CGG + chr3_2:88535453-88535472 None:intergenic 25.0%
! AAGATACACAGATATGAAAA+AGG + chr3_2:88535730-88535749 None:intergenic 25.0%
!!! TGTGTATCTTTTTTACCTTA+GGG - chr3_2:88535740-88535759 Msa0435390:intron 25.0%
! TTAAATCGTTTAAAAACCTG+TGG + chr3_2:88535865-88535884 None:intergenic 25.0%
!! TTAGTTGTTGTTAATGTTCT+TGG - chr3_2:88535931-88535950 Msa0435390:intron 25.0%
! GTTAGTTGTTTGTCATAAAT+TGG + chr3_2:88535988-88536007 None:intergenic 25.0%
! TCTAATGCAGTTAAAACTAA+AGG + chr3_2:88536039-88536058 None:intergenic 25.0%
! AAACACATACTACATAATGT+AGG + chr3_2:88536132-88536151 None:intergenic 25.0%
!! AATACCTTGATTATTTTCGT+TGG - chr3_2:88536166-88536185 Msa0435390:intron 25.0%
! TCATACTAATATCATGTTCT+TGG + chr3_2:88536520-88536539 None:intergenic 25.0%
CTAATATGGTAAAAAGTAGC+AGG + chr3_2:88530467-88530486 None:intergenic 30.0%
! AATGTCGTGTTACTCTAATA+TGG + chr3_2:88530481-88530500 None:intergenic 30.0%
TGTGGAACAATAGAACTTTA+TGG - chr3_2:88530573-88530592 Msa0435390:intron 30.0%
AGTATAAGCATGTCTATTTC+TGG - chr3_2:88530642-88530661 Msa0435390:CDS 30.0%
TAAAAGAAAAACGACAACAG+TGG + chr3_2:88530759-88530778 None:intergenic 30.0%
AACATATATCAATCCAGACT+CGG + chr3_2:88530840-88530859 None:intergenic 30.0%
! ATTAGGAATTTGGTCCATTT+TGG + chr3_2:88530956-88530975 None:intergenic 30.0%
TTCTTCATCTTTGTAAACTG+TGG - chr3_2:88531157-88531176 Msa0435390:intron 30.0%
ACCAGTTCTATCATTGTTTA+AGG - chr3_2:88531191-88531210 Msa0435390:intron 30.0%
ACCTTAAACAATGATAGAAC+TGG + chr3_2:88531195-88531214 None:intergenic 30.0%
GAGTTACTACCAATATTTGA+AGG + chr3_2:88531261-88531280 None:intergenic 30.0%
!!! TTTTGAAATTCTCATTCCTC+AGG - chr3_2:88531351-88531370 Msa0435390:intron 30.0%
ACATACATACATGCATACAT+GGG + chr3_2:88531397-88531416 None:intergenic 30.0%
AAGCAACAATTAAAGTGAGA+TGG + chr3_2:88531474-88531493 None:intergenic 30.0%
TAATGCAATCATTTCTTGTC+AGG - chr3_2:88531653-88531672 Msa0435390:intron 30.0%
AAAAATCCTTGAGATTCAGA+TGG + chr3_2:88531707-88531726 None:intergenic 30.0%
! GATTTTTAAATGTCATGGCT+GGG - chr3_2:88531720-88531739 Msa0435390:intron 30.0%
AGGAGTAAATCTTGATCATT+GGG - chr3_2:88531818-88531837 Msa0435390:intron 30.0%
ACATTTAGGCATACCAATAT+TGG - chr3_2:88531938-88531957 Msa0435390:intron 30.0%
CCTTAAGTAACTTCCAATAT+TGG + chr3_2:88531954-88531973 None:intergenic 30.0%
CCAATATTGGAAGTTACTTA+AGG - chr3_2:88531951-88531970 Msa0435390:intron 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG + chr3_2:88532019-88532038 None:intergenic 30.0%
!! CCTTCATTTCTTTTGAGAAA+TGG + chr3_2:88532024-88532043 None:intergenic 30.0%
CCATTTCTCAAAAGAAATGA+AGG - chr3_2:88532021-88532040 Msa0435390:CDS 30.0%
GATAGTGACACATATGATAT+TGG - chr3_2:88532055-88532074 Msa0435390:intron 30.0%
CACAAGATCATGTTAAAGAT+TGG + chr3_2:88532169-88532188 None:intergenic 30.0%
CAATCTTTAACATGATCTTG+TGG - chr3_2:88532167-88532186 Msa0435390:CDS 30.0%
! ATGTTATTTGTCCTGTTGTT+AGG - chr3_2:88532277-88532296 Msa0435390:intron 30.0%
! TGTTATTTGTCCTGTTGTTA+GGG - chr3_2:88532278-88532297 Msa0435390:intron 30.0%
GATTGTTTGTATTGTGCTTA+AGG + chr3_2:88532600-88532619 None:intergenic 30.0%
TCATGTAATAATCAGTTCCA+AGG + chr3_2:88533207-88533226 None:intergenic 30.0%
AACTGATTATTACATGACTC+TGG - chr3_2:88533210-88533229 Msa0435390:intron 30.0%
ACATGACTCTGGTTATTTAT+TGG - chr3_2:88533221-88533240 Msa0435390:intron 30.0%
CATGACTCTGGTTATTTATT+GGG - chr3_2:88533222-88533241 Msa0435390:intron 30.0%
GGACGAATATGGTATTAAAT+TGG + chr3_2:88533273-88533292 None:intergenic 30.0%
GACAACGAAATTCTGTATTT+AGG + chr3_2:88533295-88533314 None:intergenic 30.0%
ATCACGAGAATTAAGAAAGT+TGG - chr3_2:88533318-88533337 Msa0435390:intron 30.0%
CCTGTAACAAATACTATGAT+GGG + chr3_2:88533411-88533430 None:intergenic 30.0%
ACCTGTAACAAATACTATGA+TGG + chr3_2:88533412-88533431 None:intergenic 30.0%
GACAAGAAAAAATCTCAAGA+GGG - chr3_2:88533520-88533539 Msa0435390:intron 30.0%
TCAAGAGGGTCTTTATATAT+AGG - chr3_2:88533534-88533553 Msa0435390:intron 30.0%
CAAGAGGGTCTTTATATATA+GGG - chr3_2:88533535-88533554 Msa0435390:intron 30.0%
ATCCTTTCAAATCCAATGTT+AGG + chr3_2:88533793-88533812 None:intergenic 30.0%
TTGGATTTGAAAGGATAGTA+CGG - chr3_2:88533797-88533816 Msa0435390:intron 30.0%
CCACATCAAAATAATCCATA+TGG + chr3_2:88533909-88533928 None:intergenic 30.0%
!!! CCATATGGATTATTTTGATG+TGG - chr3_2:88533906-88533925 Msa0435390:intron 30.0%
! ATAAAGGTTTTTCCATTTCC+AGG - chr3_2:88534108-88534127 Msa0435390:intron 30.0%
! TAAAGGTTTTTCCATTTCCA+GGG - chr3_2:88534109-88534128 Msa0435390:intron 30.0%
ATTGTCATAGAAACAAAGGA+GGG + chr3_2:88534223-88534242 None:intergenic 30.0%
AATTGTCATAGAAACAAAGG+AGG + chr3_2:88534224-88534243 None:intergenic 30.0%
TTGACATGAATAAGAAAGGA+TGG + chr3_2:88534288-88534307 None:intergenic 30.0%
TCCTTTCTTATTCATGTCAA+AGG - chr3_2:88534288-88534307 Msa0435390:intron 30.0%
CCTTTCTTATTCATGTCAAA+GGG - chr3_2:88534289-88534308 Msa0435390:intron 30.0%
! AAGTGTTGTAGATATGAAGA+TGG - chr3_2:88534682-88534701 Msa0435390:intron 30.0%
AACTATGATGCTTCTAGTAA+TGG - chr3_2:88535031-88535050 Msa0435390:intron 30.0%
!!! CCTTTTGCTATTCAGATTAA+TGG + chr3_2:88535376-88535395 None:intergenic 30.0%
CCATTAATCTGAATAGCAAA+AGG - chr3_2:88535373-88535392 Msa0435390:intron 30.0%
CCGTTCAAATGTTCAAAATT+TGG - chr3_2:88535450-88535469 Msa0435390:intron 30.0%
!!! CTGTGTATCTTTTTTACCTT+AGG - chr3_2:88535739-88535758 Msa0435390:intron 30.0%
GGTCAATAAAGAAATCACAT+TGG - chr3_2:88535772-88535791 Msa0435390:intron 30.0%
TTATGGATCATCAAGAAATG+TGG + chr3_2:88535911-88535930 None:intergenic 30.0%
GATTCATGTCAATAATACTG+AGG + chr3_2:88535963-88535982 None:intergenic 30.0%
TGTACCAACGAAAATAATCA+AGG + chr3_2:88536173-88536192 None:intergenic 30.0%
ATATCCTTATTCTGCCAATA+AGG + chr3_2:88536224-88536243 None:intergenic 30.0%
AGGATATATAATTACCGCAA+AGG - chr3_2:88536237-88536256 Msa0435390:intron 30.0%
ATGATACTTAAGTACAGCTA+AGG + chr3_2:88536268-88536287 None:intergenic 30.0%
TTCGTCTGATTGTAAACTTA+TGG - chr3_2:88536447-88536466 Msa0435390:intron 30.0%
TACTAATATCATGTTCTTGG+AGG + chr3_2:88536517-88536536 None:intergenic 30.0%
! TGTGAGTTCTAGTCAACAAT+TGG - chr3_2:88530370-88530389 Msa0435390:three_prime_UTR 35.0%
!!! ACTTTTGAAACTTGTTACGG+TGG - chr3_2:88530403-88530422 Msa0435390:CDS 35.0%
GAATTCAAATGTCAGGTTCA+TGG + chr3_2:88530438-88530457 None:intergenic 35.0%
GAACTCTGAATTCAAATGTC+AGG + chr3_2:88530445-88530464 None:intergenic 35.0%
ACGACATTCATTGAATTGTG+AGG - chr3_2:88530493-88530512 Msa0435390:intron 35.0%
!! CAAATTTGATAGCGTTGCAT+TGG - chr3_2:88530540-88530559 Msa0435390:intron 35.0%
TTATACTCAGAAAGCAACTG+TGG + chr3_2:88530629-88530648 None:intergenic 35.0%
TAGCTGTATTTGAGCTTGTA+AGG - chr3_2:88530713-88530732 Msa0435390:intron 35.0%
!! TGAGTCTTCTCGCTTATTTT+TGG - chr3_2:88530900-88530919 Msa0435390:intron 35.0%
GAAAGGCAAGATTAGGAATT+TGG + chr3_2:88530966-88530985 None:intergenic 35.0%
CAACATAGAAAGGCAAGATT+AGG + chr3_2:88530973-88530992 None:intergenic 35.0%
CAATTAAGGGCTATCATATG+TGG - chr3_2:88531081-88531100 Msa0435390:CDS 35.0%
TCTTCAATTGTTAGCAGCAA+AGG - chr3_2:88531279-88531298 Msa0435390:intron 35.0%
CACATACATACATGCATACA+TGG + chr3_2:88531398-88531417 None:intergenic 35.0%
ATTAATAGCTAGACCTTGAC+TGG - chr3_2:88531592-88531611 Msa0435390:intron 35.0%
! GGATTTTTAAATGTCATGGC+TGG - chr3_2:88531719-88531738 Msa0435390:intron 35.0%
ACGTCTTCAATGTGTATTTG+CGG + chr3_2:88531781-88531800 None:intergenic 35.0%
GAGGAGTAAATCTTGATCAT+TGG - chr3_2:88531817-88531836 Msa0435390:intron 35.0%
ACGATCCAAGTGATATAGAT+TGG - chr3_2:88531893-88531912 Msa0435390:intron 35.0%
CTTGACCAATCTATATCACT+TGG + chr3_2:88531901-88531920 None:intergenic 35.0%
CGCTTAAAAAGTCCTAAACT+CGG - chr3_2:88531985-88532004 Msa0435390:CDS 35.0%
GCTTAAAAAGTCCTAAACTC+GGG - chr3_2:88531986-88532005 Msa0435390:CDS 35.0%
! ATATGTGTCACTATCTCCAA+TGG + chr3_2:88532050-88532069 None:intergenic 35.0%
AGTGACACATATGATATTGG+TGG - chr3_2:88532058-88532077 Msa0435390:intron 35.0%
GTGACACATATGATATTGGT+GGG - chr3_2:88532059-88532078 Msa0435390:intron 35.0%
GATCTTGAAAGAAATGGAGA+GGG + chr3_2:88532124-88532143 None:intergenic 35.0%
ACAAACAATCCTCCTTATGA+AGG - chr3_2:88532610-88532629 Msa0435390:intron 35.0%
CATACATGTCATACAGATGT+TGG + chr3_2:88532664-88532683 None:intergenic 35.0%
GTCTCGAACAAACTTCATTT+AGG - chr3_2:88532911-88532930 Msa0435390:intron 35.0%
GAATCTTGACTATCCATACA+AGG + chr3_2:88532982-88533001 None:intergenic 35.0%
GATTTATGTATGTCATGTCC+TGG - chr3_2:88533056-88533075 Msa0435390:intron 35.0%
TGTGCAAACATGACAGAAAA+TGG - chr3_2:88533117-88533136 Msa0435390:intron 35.0%
TCTGTATTTAGGGACGAATA+TGG + chr3_2:88533284-88533303 None:intergenic 35.0%
! CCCATCATAGTATTTGTTAC+AGG - chr3_2:88533408-88533427 Msa0435390:intron 35.0%
GGACAAGAAAAAATCTCAAG+AGG - chr3_2:88533519-88533538 Msa0435390:intron 35.0%
AAAAATGACAGAATGTGGCT+TGG + chr3_2:88533666-88533685 None:intergenic 35.0%
TATGAGAAAACAAGCTACAG+CGG + chr3_2:88533762-88533781 None:intergenic 35.0%
CATAAAACTGAGCCTAACAT+TGG - chr3_2:88533778-88533797 Msa0435390:intron 35.0%
AGCCTAACATTGGATTTGAA+AGG - chr3_2:88533788-88533807 Msa0435390:intron 35.0%
AGTATTGTGCACTGTGAATT+TGG - chr3_2:88533840-88533859 Msa0435390:intron 35.0%
TGAATTTGGTACTACGTTTG+TGG - chr3_2:88533854-88533873 Msa0435390:intron 35.0%
GAATTTGGTACTACGTTTGT+GGG - chr3_2:88533855-88533874 Msa0435390:intron 35.0%
!! GGAAGATTAAGGCATTGATT+TGG - chr3_2:88533882-88533901 Msa0435390:intron 35.0%
!!! TTATTTTGATGTGGTCTGTC+TGG - chr3_2:88533915-88533934 Msa0435390:intron 35.0%
! TAGTAAGGTTTTGCTTTGCA+AGG - chr3_2:88534031-88534050 Msa0435390:intron 35.0%
CTGTACCATTAACACAAAAC+AGG + chr3_2:88534087-88534106 None:intergenic 35.0%
GTGTTAATGGTACAGCATAA+AGG - chr3_2:88534092-88534111 Msa0435390:intron 35.0%
! TAATAGCCATGATTAGCTCA+TGG + chr3_2:88534177-88534196 None:intergenic 35.0%
GGCAATTGTCATAGAAACAA+AGG + chr3_2:88534227-88534246 None:intergenic 35.0%
CCCTTTGACATGAATAAGAA+AGG + chr3_2:88534292-88534311 None:intergenic 35.0%
ATCACTATGCATATAAGAGG+AGG + chr3_2:88534343-88534362 None:intergenic 35.0%
TCCTCTTATATGCATAGTGA+TGG - chr3_2:88534342-88534361 Msa0435390:intron 35.0%
! AACTAGAAAGGTGTAACCAA+GGG - chr3_2:88534410-88534429 Msa0435390:intron 35.0%
TGGAATTTCACAGAACTTAC+TGG + chr3_2:88534745-88534764 None:intergenic 35.0%
!!! GATTTTGTAGTTCTGAGCAT+TGG - chr3_2:88534848-88534867 Msa0435390:intron 35.0%
!! AGTTGAAGGGTTGATGTAAT+TGG - chr3_2:88535240-88535259 Msa0435390:intron 35.0%
TACCACTTCAAGAATACTTG+AGG - chr3_2:88535344-88535363 Msa0435390:intron 35.0%
CAACAGCCTGTTATCATTAT+GGG + chr3_2:88535420-88535439 None:intergenic 35.0%
!! ATACAAACTTGCTACTGCAA+TGG + chr3_2:88535550-88535569 None:intergenic 35.0%
TTATTCTGCCAATAAGGTGA+CGG + chr3_2:88536218-88536237 None:intergenic 35.0%
ACTTAAGTATCATCATGCCA+CGG - chr3_2:88536275-88536294 Msa0435390:intron 35.0%
ATGGCTAAGAATCAGAGTAC+GGG - chr3_2:88530261-88530280 Msa0435390:three_prime_UTR 40.0%
AGATTGCCTTGAAACAGAAG+AGG - chr3_2:88530308-88530327 Msa0435390:three_prime_UTR 40.0%
TATGAGCCTCTTCTGTTTCA+AGG + chr3_2:88530317-88530336 None:intergenic 40.0%
!! AGTTGTTCTGAAAGCTCTGA+AGG - chr3_2:88530345-88530364 Msa0435390:three_prime_UTR 40.0%
TCAAATGTCAGGTTCATGGA+TGG + chr3_2:88530434-88530453 None:intergenic 40.0%
!! TGCATTGGCTGCAAAATTTG+TGG - chr3_2:88530555-88530574 Msa0435390:intron 40.0%
!!! GTCTTCTCGCTTATTTTTGG+AGG - chr3_2:88530903-88530922 Msa0435390:intron 40.0%
ATCTCCAAAGTGCAATAGCA+GGG + chr3_2:88530929-88530948 None:intergenic 40.0%
! CTTTGGAGATGGTACCAAAA+TGG - chr3_2:88530939-88530958 Msa0435390:intron 40.0%
!! GCTATCATATGTGGCTTTGT+CGG - chr3_2:88531090-88531109 Msa0435390:CDS 40.0%
!! CTATCATATGTGGCTTTGTC+GGG - chr3_2:88531091-88531110 Msa0435390:CDS 40.0%
!! TATCATATGTGGCTTTGTCG+GGG - chr3_2:88531092-88531111 Msa0435390:CDS 40.0%
ATGATAGAACTGGTGAGCTT+GGG + chr3_2:88531185-88531204 None:intergenic 40.0%
AATGATAGAACTGGTGAGCT+TGG + chr3_2:88531186-88531205 None:intergenic 40.0%
ACACGTCTCCCTTCAAATAT+TGG - chr3_2:88531249-88531268 Msa0435390:intron 40.0%
AAGAATGGGAAATCCAGTCA+AGG + chr3_2:88531608-88531627 None:intergenic 40.0%
TGACTGGATTTCCCATTCTT+TGG - chr3_2:88531608-88531627 Msa0435390:intron 40.0%
TGTGTACCATCTGAATCTCA+AGG - chr3_2:88531698-88531717 Msa0435390:intron 40.0%
CGTCTTCAATGTGTATTTGC+GGG + chr3_2:88531780-88531799 None:intergenic 40.0%
TGTCTCCTCATCTCACATTT+AGG - chr3_2:88531924-88531943 Msa0435390:intron 40.0%
GTATGCCTAAATGTGAGATG+AGG + chr3_2:88531932-88531951 None:intergenic 40.0%
AAAGAAATGAAGGGCTCCAT+TGG - chr3_2:88532031-88532050 Msa0435390:CDS 40.0%
GGATCTTGAAAGAAATGGAG+AGG + chr3_2:88532125-88532144 None:intergenic 40.0%
GGTTGGGATCTTGAAAGAAA+TGG + chr3_2:88532130-88532149 None:intergenic 40.0%
AAGATTGGAATGCCGAGTTT+GGG + chr3_2:88532154-88532173 None:intergenic 40.0%
AAAGATTGGAATGCCGAGTT+TGG + chr3_2:88532155-88532174 None:intergenic 40.0%
CACAAATACACACAGTGAGA+CGG + chr3_2:88532193-88532212 None:intergenic 40.0%
CAAACTCAGCTTGAAAGAGA+GGG + chr3_2:88532502-88532521 None:intergenic 40.0%
TCAAACTCAGCTTGAAAGAG+AGG + chr3_2:88532503-88532522 None:intergenic 40.0%
! AATCCTCCTTATGAAGGTGT+TGG - chr3_2:88532616-88532635 Msa0435390:intron 40.0%
AACGTTCCAACACCTTCATA+AGG + chr3_2:88532625-88532644 None:intergenic 40.0%
!! TTATGAAGGTGTTGGAACGT+TGG - chr3_2:88532624-88532643 Msa0435390:intron 40.0%
TTTAAATCAGACAAACGGGG+AGG + chr3_2:88532696-88532715 None:intergenic 40.0%
! GTATAAGTTGAGACGAAGAG+AGG + chr3_2:88533008-88533027 None:intergenic 40.0%
TTATGTATGTCATGTCCTGG+TGG - chr3_2:88533059-88533078 Msa0435390:intron 40.0%
!!! TGAGTTTTGAAGAGTAGCCT+TGG - chr3_2:88533187-88533206 Msa0435390:intron 40.0%
ACTCTGGTTATTTATTGGGC+AGG - chr3_2:88533226-88533245 Msa0435390:intron 40.0%
TGCACTCTTCAAGAGATGAT+TGG - chr3_2:88533377-88533396 Msa0435390:intron 40.0%
! CAACATAGTTAGAGGTATGC+AGG - chr3_2:88533446-88533465 Msa0435390:intron 40.0%
! AGTTAGAGGTATGCAGGTAA+TGG - chr3_2:88533452-88533471 Msa0435390:intron 40.0%
ACTAATGAATGGTCCAAACC+AGG + chr3_2:88533723-88533742 None:intergenic 40.0%
CAGAGTAGCTGACTAATGAA+TGG + chr3_2:88533734-88533753 None:intergenic 40.0%
!! TTGTGGGCTTTGGAAGATTA+AGG - chr3_2:88533871-88533890 Msa0435390:intron 40.0%
!! AGGCATTGATTTGGTCCATA+TGG - chr3_2:88533891-88533910 Msa0435390:intron 40.0%
!! TGTCTGGAAGTATCTACTGT+GGG - chr3_2:88533931-88533950 Msa0435390:intron 40.0%
!! ACTGTGGGTGCTGAAAAAAT+TGG - chr3_2:88533946-88533965 Msa0435390:intron 40.0%
TTTGGCATGTCTTTGTGACT+TGG - chr3_2:88534006-88534025 Msa0435390:intron 40.0%
!! CTTTGTGACTTGGACTAGTA+AGG - chr3_2:88534016-88534035 Msa0435390:intron 40.0%
! TGGGTCCTGTTTTGTGTTAA+TGG - chr3_2:88534079-88534098 Msa0435390:intron 40.0%
! CTCTACTTTGGTGCATTCTA+TGG - chr3_2:88534151-88534170 Msa0435390:intron 40.0%
GCCATCACTATGCATATAAG+AGG + chr3_2:88534346-88534365 None:intergenic 40.0%
!! CAAGTGTGTTTCTAGCAACT+AGG - chr3_2:88534375-88534394 Msa0435390:intron 40.0%
! CTTGGTTACACCTTTCTAGT+TGG + chr3_2:88534411-88534430 None:intergenic 40.0%
! CAACTAGAAAGGTGTAACCA+AGG - chr3_2:88534409-88534428 Msa0435390:intron 40.0%
ATGGTTTCAACTAGCCAGAA+AGG - chr3_2:88534446-88534465 Msa0435390:intron 40.0%
! ATGTTGTCAGGTAGGGTATT+TGG - chr3_2:88534562-88534581 Msa0435390:intron 40.0%
ATGAAGATGGTACCATGCTT+TGG - chr3_2:88534695-88534714 Msa0435390:intron 40.0%
!! GTTCTGAGCATTGGTATTGA+CGG - chr3_2:88534857-88534876 Msa0435390:intron 40.0%
! GTATTGACGGATCTTGCAAA+GGG - chr3_2:88534870-88534889 Msa0435390:intron 40.0%
! TATTGACGGATCTTGCAAAG+GGG - chr3_2:88534871-88534890 Msa0435390:intron 40.0%
GTACAGCTTGGATCATTCTT+CGG - chr3_2:88534928-88534947 Msa0435390:intron 40.0%
GTAATTGGAGTCAAACCAAC+TGG - chr3_2:88535255-88535274 Msa0435390:intron 40.0%
CACCTCAAGTATTCTTGAAG+TGG + chr3_2:88535349-88535368 None:intergenic 40.0%
TAGCAAAAGGAAGCTTTCAC+TGG - chr3_2:88535386-88535405 Msa0435390:intron 40.0%
CCAACAGCCTGTTATCATTA+TGG + chr3_2:88535421-88535440 None:intergenic 40.0%
CCATAATGATAACAGGCTGT+TGG - chr3_2:88535418-88535437 Msa0435390:intron 40.0%
TCATTTCTTGTTACGCAACC+TGG + chr3_2:88535600-88535619 None:intergenic 40.0%
TTTACCTTAGGGTACATGTG+TGG - chr3_2:88535751-88535770 Msa0435390:intron 40.0%
ATCATCAAGAAATGTGGTGG+TGG + chr3_2:88535905-88535924 None:intergenic 40.0%
TGGATCATCAAGAAATGTGG+TGG + chr3_2:88535908-88535927 None:intergenic 40.0%
GTCACCTTATTGGCAGAATA+AGG - chr3_2:88536217-88536236 Msa0435390:intron 40.0%
!! TTGAAAACATCGACTTACCG+TGG + chr3_2:88536295-88536314 None:intergenic 40.0%
TGGCTAAGAATCAGAGTACG+GGG - chr3_2:88530262-88530281 Msa0435390:three_prime_UTR 45.0%
CATCTCCAAAGTGCAATAGC+AGG + chr3_2:88530930-88530949 None:intergenic 45.0%
! CTGCTATTGCACTTTGGAGA+TGG - chr3_2:88530928-88530947 Msa0435390:intron 45.0%
!! ATCATATGTGGCTTTGTCGG+GGG - chr3_2:88531093-88531112 Msa0435390:CDS 45.0%
TGATAGAACTGGTGAGCTTG+GGG + chr3_2:88531184-88531203 None:intergenic 45.0%
TTTCTTGTCAGGCATGTGCA+TGG - chr3_2:88531664-88531683 Msa0435390:intron 45.0%
GAGGATATTGACCCGAGTTT+AGG + chr3_2:88532000-88532019 None:intergenic 45.0%
GGGGACTGGGTATCAAATAT+GGG + chr3_2:88532086-88532105 None:intergenic 45.0%
TGGGGACTGGGTATCAAATA+TGG + chr3_2:88532087-88532106 None:intergenic 45.0%
CCATATAGAGTTTGGGGACT+GGG + chr3_2:88532099-88532118 None:intergenic 45.0%
AGGGAGCCATATAGAGTTTG+GGG + chr3_2:88532105-88532124 None:intergenic 45.0%
GAGGGAGCCATATAGAGTTT+GGG + chr3_2:88532106-88532125 None:intergenic 45.0%
AGAGGGAGCCATATAGAGTT+TGG + chr3_2:88532107-88532126 None:intergenic 45.0%
AGATTGGAATGCCGAGTTTG+GGG + chr3_2:88532153-88532172 None:intergenic 45.0%
AATCGCAACTCCCTAACAAC+AGG + chr3_2:88532291-88532310 None:intergenic 45.0%
TGAGTTTCATGACAGCCCAA+GGG + chr3_2:88532440-88532459 None:intergenic 45.0%
TTGAGTTTCATGACAGCCCA+AGG + chr3_2:88532441-88532460 None:intergenic 45.0%
GTTCCAACACCTTCATAAGG+AGG + chr3_2:88532622-88532641 None:intergenic 45.0%
TGTTTAGCAAGTGTCCAAGC+TGG + chr3_2:88532731-88532750 None:intergenic 45.0%
! GCTTGGACACTTGCTAAACA+CGG - chr3_2:88532731-88532750 Msa0435390:intron 45.0%
! GACACTTGCTAAACACGGTT+TGG - chr3_2:88532736-88532755 Msa0435390:intron 45.0%
!! GCTAAACACGGTTTGGTGTT+TGG - chr3_2:88532743-88532762 Msa0435390:intron 45.0%
CATACAAGGTCGTGTAGGTA+TGG + chr3_2:88532968-88532987 None:intergenic 45.0%
CATACCTACACGACCTTGTA+TGG - chr3_2:88532966-88532985 Msa0435390:intron 45.0%
CTATCCATACAAGGTCGTGT+AGG + chr3_2:88532973-88532992 None:intergenic 45.0%
CTAATACACCATAGACCACC+AGG + chr3_2:88533077-88533096 None:intergenic 45.0%
ACAGAGAACGTCACAGAATC+TGG - chr3_2:88533151-88533170 Msa0435390:intron 45.0%
CTGCAGTGTGTTTCATCTGT+AGG + chr3_2:88533611-88533630 None:intergenic 45.0%
TGAAAGGATAGTACGGTGTG+TGG - chr3_2:88533804-88533823 Msa0435390:intron 45.0%
GAAAGGATAGTACGGTGTGT+GGG - chr3_2:88533805-88533824 Msa0435390:intron 45.0%
!! CTGTCTGGAAGTATCTACTG+TGG - chr3_2:88533930-88533949 Msa0435390:intron 45.0%
TTACCCCTGGGCTGAAAATT+TGG - chr3_2:88533988-88534007 Msa0435390:intron 45.0%
! ATGCCAAATTTTCAGCCCAG+GGG + chr3_2:88533994-88534013 None:intergenic 45.0%
! CATGCCAAATTTTCAGCCCA+GGG + chr3_2:88533995-88534014 None:intergenic 45.0%
! ACATGCCAAATTTTCAGCCC+AGG + chr3_2:88533996-88534015 None:intergenic 45.0%
CTATGGCCATGAGCTAATCA+TGG - chr3_2:88534168-88534187 Msa0435390:intron 45.0%
CTATGACAATTGCCACGTTG+TGG - chr3_2:88534233-88534252 Msa0435390:intron 45.0%
!! TACACCTTTCTAGTTGGCCA+TGG + chr3_2:88534405-88534424 None:intergenic 45.0%
!! TGATGTCGTGTCGCTGATTT+GGG - chr3_2:88534478-88534497 Msa0435390:intron 45.0%
AAGATGGTACCATGCTTTGG+TGG - chr3_2:88534698-88534717 Msa0435390:intron 45.0%
AGATGGTACCATGCTTTGGT+GGG - chr3_2:88534699-88534718 Msa0435390:intron 45.0%
ACAGAACTTACTGGAACTCC+AGG + chr3_2:88534736-88534755 None:intergenic 45.0%
GTGAAATTCCATTCTGAGCC+AGG - chr3_2:88534754-88534773 Msa0435390:intron 45.0%
TGATGACTGATGTCGATACC+TGG + chr3_2:88534775-88534794 None:intergenic 45.0%
!! GGTATTGACGGATCTTGCAA+AGG - chr3_2:88534869-88534888 Msa0435390:intron 45.0%
! ATTGACGGATCTTGCAAAGG+GGG - chr3_2:88534872-88534891 Msa0435390:intron 45.0%
GAGGATTGTGATGTACAGCT+TGG - chr3_2:88534916-88534935 Msa0435390:intron 45.0%
TCAGTCTCTCTTTCTCTCTC+TGG - chr3_2:88535118-88535137 Msa0435390:intron 45.0%
GTATGAAGTCAACGACCAGT+TGG + chr3_2:88535273-88535292 None:intergenic 45.0%
TTGACCACACATGTACCCTA+AGG + chr3_2:88535758-88535777 None:intergenic 45.0%
GCATCTCAGGCATCTCAATT+CGG - chr3_2:88535804-88535823 Msa0435390:CDS 45.0%
! GTTGCAGCAATTTTGCCATC+AGG + chr3_2:88535830-88535849 None:intergenic 45.0%
!! ATCAAGAAATGTGGTGGTGG+TGG + chr3_2:88535902-88535921 None:intergenic 45.0%
ACGGACAGGTATTAAACAGC+GGG + chr3_2:88536199-88536218 None:intergenic 45.0%
GACGGACAGGTATTAAACAG+CGG + chr3_2:88536200-88536219 None:intergenic 45.0%
ATACCTGTCCGTCACCTTAT+TGG - chr3_2:88536207-88536226 Msa0435390:intron 45.0%
!! CAATTAAATTAATAAATTAT+CGG + chr3_2:88536385-88536404 None:intergenic 5.0%
AGAGTACGGGGTCAAAAGCA+GGG - chr3_2:88530274-88530293 Msa0435390:three_prime_UTR 50.0%
! TGGTACACTTTTGCCGAGTC+TGG - chr3_2:88530824-88530843 Msa0435390:intron 50.0%
CGTGCTGCATTATGAGTGAG+AGG - chr3_2:88531798-88531817 Msa0435390:intron 50.0%
CCCAGTCCCCAAACTCTATA+TGG - chr3_2:88532096-88532115 Msa0435390:intron 50.0%
GCCATATAGAGTTTGGGGAC+TGG + chr3_2:88532100-88532119 None:intergenic 50.0%
ATTGGAATGCCGAGTTTGGG+GGG + chr3_2:88532151-88532170 None:intergenic 50.0%
GATTGGAATGCCGAGTTTGG+GGG + chr3_2:88532152-88532171 None:intergenic 50.0%
TGTATTTGTGCGAGCGTGTG+CGG - chr3_2:88532203-88532222 Msa0435390:CDS 50.0%
TGTCATGTCCTGGTGGTCTA+TGG - chr3_2:88533066-88533085 Msa0435390:intron 50.0%
AACCTTCCAAATTCTGGGCC+TGG - chr3_2:88533702-88533721 Msa0435390:intron 50.0%
AACCAGGCCCAGAATTTGGA+AGG + chr3_2:88533707-88533726 None:intergenic 50.0%
TCCAAATTCTGGGCCTGGTT+TGG - chr3_2:88533707-88533726 Msa0435390:intron 50.0%
TCCAAACCAGGCCCAGAATT+TGG + chr3_2:88533711-88533730 None:intergenic 50.0%
GGTACTACGTTTGTGGGCTT+TGG - chr3_2:88533861-88533880 Msa0435390:intron 50.0%
TTTGTGGTCTGAGTTACCCC+TGG - chr3_2:88533975-88533994 Msa0435390:intron 50.0%
TTGTGGTCTGAGTTACCCCT+GGG - chr3_2:88533976-88533995 Msa0435390:intron 50.0%
AGTCTCAGACTCCCTGGAAA+TGG + chr3_2:88534123-88534142 None:intergenic 50.0%
! TTCCAGGGAGTCTGAGACTT+CGG - chr3_2:88534124-88534143 Msa0435390:intron 50.0%
! GACTTCGGTGTGCTCTACTT+TGG - chr3_2:88534139-88534158 Msa0435390:intron 50.0%
!! TCTAGCAACTAGGAGTGCCA+TGG - chr3_2:88534385-88534404 Msa0435390:intron 50.0%
AGTGCCATGGCCAACTAGAA+AGG - chr3_2:88534398-88534417 Msa0435390:intron 50.0%
CATGAGAAACGCAACACCCT+TGG + chr3_2:88534429-88534448 None:intergenic 50.0%
!! CAAGGGTGTTGCGTTTCTCA+TGG - chr3_2:88534427-88534446 Msa0435390:intron 50.0%
CATCACAGGTCACACCTTTC+TGG + chr3_2:88534463-88534482 None:intergenic 50.0%
AATCAGCGACACGACATCAC+AGG + chr3_2:88534477-88534496 None:intergenic 50.0%
! GTGATGTCGTGTCGCTGATT+TGG - chr3_2:88534477-88534496 Msa0435390:intron 50.0%
CCATGCTTTGGTGGGATGTA+CGG - chr3_2:88534707-88534726 Msa0435390:intron 50.0%
TGTCGATACCTGGCTCAGAA+TGG + chr3_2:88534765-88534784 None:intergenic 50.0%
!! ATCTTGCAAAGGGGGCATCT+CGG - chr3_2:88534880-88534899 Msa0435390:intron 50.0%
CTGGCACTTAGTAGCTACTC+TGG + chr3_2:88535581-88535600 None:intergenic 50.0%
CAGAGTAGCTACTAAGTGCC+AGG - chr3_2:88535579-88535598 Msa0435390:intron 50.0%
GAAATCACATTGGAGCGACC+TGG - chr3_2:88535782-88535801 Msa0435390:intron 50.0%
ATTGAGATGCCTGAGATGCC+AGG + chr3_2:88535803-88535822 None:intergenic 50.0%
GGCAAAATTGCTGCAACTGC+TGG - chr3_2:88535833-88535852 Msa0435390:intron 50.0%
AAATTGCTGCAACTGCTGGC+TGG - chr3_2:88535837-88535856 Msa0435390:intron 50.0%
! AATTGCTGCAACTGCTGGCT+GGG - chr3_2:88535838-88535857 Msa0435390:intron 50.0%
! TATCCAGCCTTGTGCGAAGT+GGG + chr3_2:88536092-88536111 None:intergenic 50.0%
! ATATCCAGCCTTGTGCGAAG+TGG + chr3_2:88536093-88536112 None:intergenic 50.0%
! CAGCTAAGGCGTTTCCTTTG+CGG + chr3_2:88536254-88536273 None:intergenic 50.0%
CAGAGTACGGGGTCAAAAGC+AGG - chr3_2:88530273-88530292 Msa0435390:three_prime_UTR 55.0%
GAGTACGGGGTCAAAAGCAG+GGG - chr3_2:88530275-88530294 Msa0435390:three_prime_UTR 55.0%
GAGGCCCTGCTATTGCACTT+TGG - chr3_2:88530922-88530941 Msa0435390:intron 55.0%
!! GGGGAGAACTCTTCTGAGGT+AGG - chr3_2:88531112-88531131 Msa0435390:CDS 55.0%
TGACAGCACTGTGGAACCTG+AGG + chr3_2:88531370-88531389 None:intergenic 55.0%
! ATGGGAGTGTGACAGCACTG+TGG + chr3_2:88531379-88531398 None:intergenic 55.0%
GCGGGTGAGTGACAAAGAGA+TGG + chr3_2:88531762-88531781 None:intergenic 55.0%
AGATCCCAACCCCCCAAACT+CGG - chr3_2:88532139-88532158 Msa0435390:intron 55.0%
AATGCCGAGTTTGGGGGGTT+GGG + chr3_2:88532146-88532165 None:intergenic 55.0%
GACAAACGGGGAGGAATGTC+TGG + chr3_2:88532687-88532706 None:intergenic 55.0%
CCGTACATCCCACCAAAGCA+TGG + chr3_2:88534710-88534729 None:intergenic 55.0%
TGGTGGGATGTACGGAATCC+TGG - chr3_2:88534715-88534734 Msa0435390:intron 55.0%
!! TCTTGCAAAGGGGGCATCTC+GGG - chr3_2:88534881-88534900 Msa0435390:intron 55.0%
GGCATCTCAATTCGGCCTGA+TGG - chr3_2:88535812-88535831 Msa0435390:CDS 55.0%
! ATCCAGCCTTGTGCGAAGTG+GGG + chr3_2:88536091-88536110 None:intergenic 55.0%
!! CTGCCAATAAGGTGACGGAC+AGG + chr3_2:88536213-88536232 None:intergenic 55.0%
! CATTGTGTCGGCAGATGCAG+AGG + chr3_2:88536473-88536492 None:intergenic 55.0%
CTCTGCATCTGCCGACACAA+TGG - chr3_2:88536471-88536490 Msa0435390:intron 55.0%
TGCATCTGCCGACACAATGG+TGG - chr3_2:88536474-88536493 Msa0435390:intron 55.0%
TACGGGGTCAAAAGCAGGGG+AGG - chr3_2:88530278-88530297 Msa0435390:three_prime_UTR 60.0%
GTCGGGGGAGAACTCTTCTG+AGG - chr3_2:88531108-88531127 Msa0435390:CDS 60.0%
GAATGCCGAGTTTGGGGGGT+TGG + chr3_2:88532147-88532166 None:intergenic 60.0%
CACCGAAGTCTCAGACTCCC+TGG + chr3_2:88534129-88534148 None:intergenic 60.0%
TCTCGGGAGCTGCAGATGAG+AGG - chr3_2:88534897-88534916 Msa0435390:intron 60.0%
TTGGAGCGACCTGGCATCTC+AGG - chr3_2:88535791-88535810 Msa0435390:intron 60.0%
CCACAGCGCCACCATTGTGT+CGG + chr3_2:88536485-88536504 None:intergenic 60.0%
! CGACACAATGGTGGCGCTGT+GGG - chr3_2:88536483-88536502 Msa0435390:intron 60.0%
! CAACTGCTGGCTGGGACCAC+AGG - chr3_2:88535846-88535865 Msa0435390:intron 65.0%
GTGCGAAGTGGGGCAGAGGA+TGG + chr3_2:88536081-88536100 None:intergenic 65.0%
CCTTGTGCGAAGTGGGGCAG+AGG + chr3_2:88536085-88536104 None:intergenic 65.0%
CCTCTGCCCCACTTCGCACA+AGG - chr3_2:88536082-88536101 Msa0435390:intron 65.0%
TGCCCCACTTCGCACAAGGC+TGG - chr3_2:88536086-88536105 Msa0435390:intron 65.0%
! CCGACACAATGGTGGCGCTG+TGG - chr3_2:88536482-88536501 Msa0435390:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 88530261 88536665 88530261 ID=Msa0435390;Name=Msa0435390
chr3_2 mRNA 88530261 88536665 88530261 ID=Msa0435390-mRNA-1;Parent=Msa0435390;Name=Msa0435390-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0.44|1|1|1|9|137|248
chr3_2 exon 88530261 88530496 88530261 ID=Msa0435390-mRNA-1:exon:26102;Parent=Msa0435390-mRNA-1
chr3_2 exon 88530630 88530693 88530630 ID=Msa0435390-mRNA-1:exon:26101;Parent=Msa0435390-mRNA-1
chr3_2 exon 88531059 88531165 88531059 ID=Msa0435390-mRNA-1:exon:26100;Parent=Msa0435390-mRNA-1
chr3_2 exon 88531977 88532068 88531977 ID=Msa0435390-mRNA-1:exon:26099;Parent=Msa0435390-mRNA-1
chr3_2 exon 88532151 88532233 88532151 ID=Msa0435390-mRNA-1:exon:26098;Parent=Msa0435390-mRNA-1
chr3_2 exon 88535185 88535251 88535185 ID=Msa0435390-mRNA-1:exon:26097;Parent=Msa0435390-mRNA-1
chr3_2 exon 88535626 88535713 88535626 ID=Msa0435390-mRNA-1:exon:26096;Parent=Msa0435390-mRNA-1
chr3_2 exon 88535797 88535837 88535797 ID=Msa0435390-mRNA-1:exon:26095;Parent=Msa0435390-mRNA-1
chr3_2 exon 88536560 88536665 88536560 ID=Msa0435390-mRNA-1:exon:26094;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88536560 88536665 88536560 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88535797 88535837 88535797 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88535626 88535713 88535626 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88535185 88535251 88535185 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88532151 88532233 88532151 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88531977 88532068 88531977 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88531059 88531165 88531059 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88530630 88530693 88530630 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 CDS 88530398 88530496 88530398 ID=Msa0435390-mRNA-1:cds;Parent=Msa0435390-mRNA-1
chr3_2 three_prime_UTR 88530261 88530397 88530261 ID=Msa0435390-mRNA-1:three_prime_utr;Parent=Msa0435390-mRNA-1
Gene Sequence

>Msa0435390

ATGGCTAAGAATCAGAGTACGGGGTCAAAAGCAGGGGAGGCATCAAAAGATTGCCTTGAAACAGAAGAGGCTCATATTAATCAAAGTTGTTCTGAAAGCTCTGAAGGGCTATCATATGTGGCTTTGTCGGGGGAGAACTCTTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAGATTTACACGTCTCCCTTCAAATATTGGTAGTAACTCTTCAATTGTTAGCAGCAAAGGCATGTGCATGGCACTTCAATTGTGTGTACCATCTGAATCTCAAGGATTTTTAAATGTCATGGCTGGATATGAAGATGGTACCATGCTTTGGTGGGATGTACGGAATCCTGGAGTTCCAGTAAGTTCTGTGAAATTCCATTCTGAGCCAGTTCTGAGCATTGGTATTGACGGATCTTGCAAAGGGGGCATCTCGGGAGCTGCAGATGAGAGGATTGTGATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAATAAAGAAATCACATTGGAGCGACCTGGCATCTCAGGCATCTCAATTCGGCCTGATGGCAAAATTGCTGCAACTGCTGGCTGGGACCACAGAATAAGGATATATAATTACCGCAAAGGAAACGCCTTAGCTGTACTTAAGTATCATCATGCCACGTGCAATGCAGTAACTTTTTCGTCTGATTGTAAACTTATGGCCTCTGCATCTGCCGACACAATGGTGGCGCTGTGGGAATTGTATCCTCCAAGAACATGA

Protein sequence

>Msa0435390

MAKNQSTGSKAGEASKDCLETEEAHINQSCSESSEGLSYVALSGENSSEVEIWDLKSAERFTRLPSNIGSNSSIVSSKGMCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRNPGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSGTCVVNKEITLERPGISGISIRPDGKIAATAGWDHRIRIYNYRKGNALAVLKYHHATCNAVTFSSDCKLMASASADTMVALWELYPPRT*