Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643380 | XP_003606488.1 | 97.527 | 364 | 9 | 0 | 1 | 364 | 126 | 489 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0643380 | 0.801110 | 1.050753e-48 | -8.615850e-47 |
| Msa0024500 | Msa0643380 | 0.811060 | 8.455702e-51 | -8.615850e-47 |
| Msa0050320 | Msa0643380 | 0.813434 | 2.564543e-51 | -8.615850e-47 |
| Msa0081700 | Msa0643380 | 0.803374 | 3.593269e-49 | -8.615850e-47 |
| Msa0120320 | Msa0643380 | 0.804774 | 1.838071e-49 | -8.615850e-47 |
| Msa0619670 | Msa0643380 | -0.812968 | 3.245666e-51 | -8.615850e-47 |
| Msa0639630 | Msa0643380 | 0.808362 | 3.214408e-50 | -8.615850e-47 |
| Msa0643380 | Msa0649530 | 0.810047 | 1.399335e-50 | -8.615850e-47 |
| Msa0643380 | Msa0683200 | 0.862199 | 6.001065e-64 | -8.615850e-47 |
| Msa0643380 | Msa0691740 | 0.823376 | 1.431883e-53 | -8.615850e-47 |
| Msa0643380 | Msa0807870 | 0.805459 | 1.321260e-49 | -8.615850e-47 |
| Msa0643380 | Msa0934290 | 0.800643 | 1.308955e-48 | -8.615850e-47 |
| Msa0643380 | Msa0971780 | 0.803125 | 4.046091e-49 | -8.615850e-47 |
| Msa0643380 | Msa1029570 | 0.806517 | 7.915485e-50 | -8.615850e-47 |
| Msa0643380 | Msa1093190 | 0.803164 | 3.972001e-49 | -8.615850e-47 |
| Msa0643380 | Msa1164830 | 0.810741 | 9.913229e-51 | -8.615850e-47 |
| Msa0643380 | Msa1175850 | 0.817033 | 4.067394e-52 | -8.615850e-47 |
| Msa0643380 | Msa1202710 | 0.809332 | 1.993824e-50 | -8.615850e-47 |
| Msa0643380 | Msa1205270 | 0.802114 | 6.540986e-49 | -8.615850e-47 |
| Msa0643380 | Msa1213470 | 0.805853 | 1.092035e-49 | -8.615850e-47 |
| Msa0643380 | Msa1235940 | 0.811214 | 7.829048e-51 | -8.615850e-47 |
| Msa0643380 | Msa1277580 | 0.811786 | 5.881831e-51 | -8.615850e-47 |
| Msa0643380 | Msa1300370 | 0.805508 | 1.290291e-49 | -8.615850e-47 |
| Msa0643380 | Msa1323260 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
| Msa0643380 | Msa1384410 | 0.808672 | 2.760356e-50 | -8.615850e-47 |
| Msa0643380 | Msa1414780 | 0.807730 | 4.382158e-50 | -8.615850e-47 |
| Msa0643380 | Msa1460530 | 0.807163 | 5.779763e-50 | -8.615850e-47 |
| Msa0154720 | Msa0643380 | 0.810885 | 9.228848e-51 | -8.615850e-47 |
| Msa0174060 | Msa0643380 | 0.811359 | 7.284656e-51 | -8.615850e-47 |
| Msa0225070 | Msa0643380 | 0.813210 | 2.872515e-51 | -8.615850e-47 |
| Msa0378310 | Msa0643380 | 0.805704 | 1.174142e-49 | -8.615850e-47 |
| Msa0457070 | Msa0643380 | 0.805809 | 1.115709e-49 | -8.615850e-47 |
| Msa0458690 | Msa0643380 | 0.806620 | 7.528052e-50 | -8.615850e-47 |
| Msa0548160 | Msa0643380 | 0.833788 | 4.360337e-56 | -8.615850e-47 |
| Msa0563230 | Msa0643380 | 0.803988 | 2.679917e-49 | -8.615850e-47 |
| Msa0563440 | Msa0643380 | -0.808289 | 3.331781e-50 | -8.615850e-47 |
| Msa0568050 | Msa0643380 | 0.832310 | 1.016678e-55 | -8.615850e-47 |
| Msa0602320 | Msa0643380 | 0.846419 | 2.197620e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643380 | MtrunA17_Chr4g0029971 | 97.527 | 364 | 9 | 0 | 1 | 364 | 126 | 489 | 0.0 | 749 |
| Msa0643380 | MtrunA17_Chr7g0263721 | 60.000 | 350 | 133 | 3 | 1 | 348 | 158 | 502 | 7.20e-162 | 463 |
| Msa0643380 | MtrunA17_Chr4g0026421 | 32.915 | 319 | 166 | 9 | 2 | 309 | 50 | 331 | 7.92e-42 | 149 |
| Msa0643380 | MtrunA17_Chr3g0136021 | 32.177 | 317 | 171 | 11 | 2 | 309 | 133 | 414 | 2.63e-40 | 147 |
| Msa0643380 | MtrunA17_Chr1g0178741 | 31.290 | 310 | 179 | 7 | 2 | 305 | 101 | 382 | 6.98e-39 | 142 |
| Msa0643380 | MtrunA17_Chr2g0321341 | 30.408 | 319 | 190 | 9 | 2 | 318 | 44 | 332 | 3.96e-38 | 139 |
| Msa0643380 | MtrunA17_Chr2g0321351 | 31.307 | 329 | 186 | 11 | 2 | 324 | 52 | 346 | 4.61e-38 | 140 |
| Msa0643380 | MtrunA17_Chr1g0178721 | 30.000 | 330 | 195 | 8 | 2 | 325 | 76 | 375 | 1.88e-37 | 138 |
| Msa0643380 | MtrunA17_Chr1g0171181 | 44.094 | 127 | 68 | 2 | 2 | 125 | 44 | 170 | 4.12e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643380 | AT3G09690.1 | 64.865 | 333 | 115 | 2 | 2 | 332 | 168 | 500 | 9.54e-166 | 474 |
| Msa0643380 | AT3G09690.2 | 64.865 | 333 | 115 | 2 | 2 | 332 | 168 | 500 | 9.54e-166 | 474 |
| Msa0643380 | AT5G02970.1 | 59.654 | 347 | 138 | 2 | 2 | 346 | 165 | 511 | 1.67e-158 | 455 |
| Msa0643380 | AT3G44510.2 | 31.707 | 328 | 183 | 10 | 2 | 319 | 11 | 307 | 1.75e-39 | 143 |
| Msa0643380 | AT5G22460.2 | 30.225 | 311 | 178 | 7 | 2 | 305 | 44 | 322 | 2.00e-38 | 140 |
| Msa0643380 | AT5G22460.3 | 30.225 | 311 | 178 | 7 | 2 | 305 | 44 | 322 | 2.00e-38 | 140 |
| Msa0643380 | AT5G22460.1 | 30.225 | 311 | 178 | 7 | 2 | 305 | 44 | 322 | 2.00e-38 | 140 |
| Msa0643380 | AT3G54240.1 | 27.356 | 329 | 208 | 6 | 2 | 327 | 48 | 348 | 2.74e-37 | 137 |
| Msa0643380 | AT1G74280.1 | 29.283 | 321 | 171 | 6 | 2 | 305 | 64 | 345 | 6.29e-37 | 137 |
| Msa0643380 | AT2G36290.2 | 31.494 | 308 | 181 | 8 | 2 | 305 | 46 | 327 | 9.14e-36 | 134 |
| Msa0643380 | AT2G36290.1 | 31.494 | 308 | 181 | 8 | 2 | 305 | 60 | 341 | 1.16e-35 | 134 |
| Msa0643380 | AT3G44510.3 | 42.697 | 178 | 84 | 6 | 2 | 171 | 11 | 178 | 1.98e-35 | 129 |
| Msa0643380 | AT1G08310.1 | 30.655 | 336 | 170 | 10 | 2 | 319 | 13 | 303 | 1.54e-34 | 129 |
| Msa0643380 | AT1G08310.2 | 30.473 | 338 | 171 | 10 | 2 | 319 | 13 | 306 | 4.21e-34 | 128 |
| Msa0643380 | AT1G74290.1 | 29.712 | 313 | 181 | 7 | 2 | 305 | 64 | 346 | 1.72e-32 | 125 |
| Msa0643380 | AT1G74300.1 | 29.114 | 316 | 178 | 6 | 2 | 305 | 47 | 328 | 1.93e-32 | 124 |
| Msa0643380 | AT3G03240.1 | 28.617 | 311 | 181 | 9 | 2 | 305 | 40 | 316 | 8.80e-32 | 122 |
| Msa0643380 | AT3G48410.1 | 28.235 | 340 | 183 | 10 | 2 | 323 | 75 | 371 | 1.14e-29 | 118 |
| Msa0643380 | AT3G48410.2 | 28.793 | 323 | 171 | 9 | 2 | 306 | 117 | 398 | 2.56e-29 | 117 |
| Msa0643380 | AT3G03230.1 | 27.213 | 305 | 192 | 6 | 2 | 305 | 40 | 315 | 2.69e-29 | 115 |
| Msa0643380 | AT1G08310.3 | 48.000 | 125 | 63 | 2 | 2 | 125 | 13 | 136 | 9.31e-28 | 109 |
| Msa0643380 | AT1G74300.2 | 27.757 | 263 | 146 | 5 | 53 | 305 | 1 | 229 | 2.43e-23 | 97.8 |
Find 110 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAAGGAATGTGCTTAAT+TGG | 0.161569 | 4_3:-46290100 | Msa0643380:CDS |
| TATCAGCGAAGTTTCTTATC+AGG | 0.205500 | 4_3:-46290610 | Msa0643380:CDS |
| CTCTTGGTGTTGACAAGTTT+TGG | 0.207857 | 4_3:-46291355 | Msa0643380:CDS |
| CAAGTTCAACGTTGGCTTCT+AGG | 0.207888 | 4_3:+46289024 | None:intergenic |
| ATCCAATCTATGAGGATTTC+TGG | 0.211014 | 4_3:-46290244 | Msa0643380:CDS |
| TGTGGAGGAAGCTGCTTTGC+AGG | 0.230425 | 4_3:-46290174 | Msa0643380:CDS |
| TTCCTTTCCTCTCGGCTTGC+AGG | 0.230918 | 4_3:-46291628 | Msa0643380:intron |
| TGCTTTGCAGGTCTCGAATT+GGG | 0.231694 | 4_3:-46290162 | Msa0643380:CDS |
| CACTGAAACTCAGGAGTATA+CGG | 0.248631 | 4_3:-46290063 | Msa0643380:CDS |
| CGAAGCTTTCCTAGACTTCT+TGG | 0.254206 | 4_3:-46290640 | Msa0643380:CDS |
| ACGTTGGCTTCTAGGGTAAT+TGG | 0.261598 | 4_3:+46289032 | None:intergenic |
| ACTTATGATCTGCCTGGTTT+TGG | 0.280877 | 4_3:-46291446 | Msa0643380:CDS |
| CATATAATTTGTGATGATAT+TGG | 0.288185 | 4_3:+46288905 | None:intergenic |
| TGAGGCTGAGAGGGCCTTGC+GGG | 0.293815 | 4_3:+46289075 | None:intergenic |
| GATTCACTGATGGAAGAATT+TGG | 0.296353 | 4_3:-46291482 | Msa0643380:CDS |
| TCCTCATCCCAAACGAAATC+TGG | 0.315816 | 4_3:-46291414 | Msa0643380:CDS |
| TTAATACCTGCAAGTCTATC+AGG | 0.327430 | 4_3:+46291278 | None:intergenic |
| TGACGATTCCAGATTTCGTT+TGG | 0.334193 | 4_3:+46291406 | None:intergenic |
| TCTGCAACTTGAGGTCTAAA+AGG | 0.346212 | 4_3:+46290132 | None:intergenic |
| CTGCTTTGCAGGTCTCGAAT+TGG | 0.353135 | 4_3:-46290163 | Msa0643380:CDS |
| CGTTTGAAATTAGGAATTCC+TGG | 0.355664 | 4_3:-46291512 | Msa0643380:intron |
| TACATACCTGATAGACTTGC+AGG | 0.361619 | 4_3:-46291284 | Msa0643380:intron |
| TGCTACCCGCATTATGCTTC+CGG | 0.364526 | 4_3:-46291728 | Msa0643380:exon |
| AATACCTGGTTGACATGATT+TGG | 0.369543 | 4_3:-46291836 | Msa0643380:five_prime_UTR |
| TGCCAGAAATCCTCATAGAT+TGG | 0.373531 | 4_3:+46290242 | None:intergenic |
| TTTGTCATCAAAGGATCATA+TGG | 0.395653 | 4_3:+46290727 | None:intergenic |
| CAGGAGTATACGGGATTTCT+CGG | 0.400274 | 4_3:-46290053 | Msa0643380:CDS |
| GACGATTCCAGATTTCGTTT+GGG | 0.408411 | 4_3:+46291407 | None:intergenic |
| CTCATACTTTCCTTTCCTCT+CGG | 0.410239 | 4_3:-46291636 | Msa0643380:CDS |
| ATGATATTGGCCAGAACAAC+GGG | 0.413247 | 4_3:+46288918 | None:intergenic |
| CAAGTGGAAGCAAGCATGCT+TGG | 0.416127 | 4_3:-46291319 | Msa0643380:CDS |
| GGGATGTGGAAGAATCAATT+AGG | 0.420004 | 4_3:-46290217 | Msa0643380:CDS |
| GAATGTGCTTAATTGGCTTA+AGG | 0.424123 | 4_3:-46290093 | Msa0643380:CDS |
| ATACAAGGAGCAAGGTGTTT+CGG | 0.426151 | 4_3:-46291689 | Msa0643380:CDS |
| CTCTCTTCGTTTGTCATCAA+AGG | 0.426304 | 4_3:+46290718 | None:intergenic |
| AAAAGTATATGTATGTGAAA+TGG | 0.431214 | 4_3:+46289141 | None:intergenic |
| AGGTGGCTGTCTTTATCTCT+TGG | 0.445446 | 4_3:-46290568 | Msa0643380:CDS |
| TAGTCTGATATGACAACAAT+TGG | 0.449971 | 4_3:-46288785 | Msa0643380:three_prime_UTR |
| AAGTTCAACGTTGGCTTCTA+GGG | 0.458277 | 4_3:+46289025 | None:intergenic |
| CTCACTTGCCATATGTGTAT+TGG | 0.459865 | 4_3:+46290029 | None:intergenic |
| TCCAGATTTCGTTTGGGATG+AGG | 0.462321 | 4_3:+46291413 | None:intergenic |
| AAGTGGAAGCAAGCATGCTT+GGG | 0.466214 | 4_3:-46291318 | Msa0643380:CDS |
| GGATCATATGGGTTCACCAT+GGG | 0.473212 | 4_3:+46290739 | None:intergenic |
| TTCTCGGTCCAATACACATA+TGG | 0.474933 | 4_3:-46290037 | Msa0643380:CDS |
| GGAAGCATGGTCAGATTGAC+AGG | 0.481984 | 4_3:-46290588 | Msa0643380:CDS |
| TTGATTACTTATGATCTGCC+TGG | 0.485276 | 4_3:-46291452 | Msa0643380:CDS |
| TTTGTGCATCGCGTACTACC+TGG | 0.493610 | 4_3:-46289194 | Msa0643380:CDS |
| AGTTTGTGTACTGCAGCTCC+AGG | 0.498358 | 4_3:+46289176 | None:intergenic |
| TGCAGAAACGAAAATACAAA+AGG | 0.502548 | 4_3:-46290115 | Msa0643380:CDS |
| TGGAAGATACATGGCATACA+AGG | 0.504189 | 4_3:-46291704 | Msa0643380:CDS |
| GCACAAAATCAGTCATTGAC+GGG | 0.504891 | 4_3:+46289210 | None:intergenic |
| CTATGAGGATTTCTGGCAAA+GGG | 0.505065 | 4_3:-46290237 | Msa0643380:CDS |
| GTCTTTATCTCTTGGAAAGA+GGG | 0.506713 | 4_3:-46290560 | Msa0643380:intron |
| GGATTTCTGGCAAAGGGATG+TGG | 0.507209 | 4_3:-46290231 | Msa0643380:CDS |
| CGAGAGGAAAGGAAAGTATG+AGG | 0.512168 | 4_3:+46291637 | None:intergenic |
| AAAATACTTGCTTCTCAAGT+GGG | 0.518790 | 4_3:+46291764 | None:intergenic |
| TGTCTTTATCTCTTGGAAAG+AGG | 0.519291 | 4_3:-46290561 | Msa0643380:CDS |
| GCTTTGCAGGTCTCGAATTG+GGG | 0.522101 | 4_3:-46290161 | Msa0643380:CDS |
| AAAGCAGCTTCCTCCACAAA+GGG | 0.525187 | 4_3:+46290179 | None:intergenic |
| TCTTTCCTATGCTGCTCCAT+CGG | 0.526421 | 4_3:+46288849 | None:intergenic |
| TATGTGAAATGGCCTTCATA+TGG | 0.527300 | 4_3:+46289152 | None:intergenic |
| TTGTCATCAAAGGATCATAT+GGG | 0.529008 | 4_3:+46290728 | None:intergenic |
| TAGAAGAAACCAAGAAGTCT+AGG | 0.529335 | 4_3:+46290631 | None:intergenic |
| ATCAGCGAAGTTTCTTATCA+GGG | 0.532446 | 4_3:-46290609 | Msa0643380:CDS |
| TATGCCATGTATCTTCCATC+CGG | 0.539640 | 4_3:+46291709 | None:intergenic |
| ATAATGCGGGTAGCACTAGC+AGG | 0.539782 | 4_3:+46291736 | None:intergenic |
| CATCTCCGATGGAGCAGCAT+AGG | 0.540320 | 4_3:-46288854 | Msa0643380:three_prime_UTR |
| TAGCTAGTCTGCTCAATACC+TGG | 0.543347 | 4_3:-46291850 | Msa0643380:five_prime_UTR |
| AAGAAATGCTGAGGCTGAGA+GGG | 0.556389 | 4_3:+46289066 | None:intergenic |
| CTGAGGCTGAGAGGGCCTTG+CGG | 0.559279 | 4_3:+46289074 | None:intergenic |
| TTGCTGTTCAAGTTCAACGT+TGG | 0.561905 | 4_3:+46289016 | None:intergenic |
| TAGTTGAGCTTCATCTCCGA+TGG | 0.565207 | 4_3:-46288865 | Msa0643380:three_prime_UTR |
| TGGATCATTGGTTACTCAAG+TGG | 0.565359 | 4_3:-46291335 | Msa0643380:CDS |
| TGGTGTTAAAGATTCACTGA+TGG | 0.566190 | 4_3:-46291492 | Msa0643380:CDS |
| ACTGAAACTCAGGAGTATAC+GGG | 0.566332 | 4_3:-46290062 | Msa0643380:CDS |
| ATCAGTGAATCTTTAACACC+AGG | 0.570063 | 4_3:+46291494 | None:intergenic |
| CAAAGCAGCTTCCTCCACAA+AGG | 0.573514 | 4_3:+46290178 | None:intergenic |
| GATGGAAGATCCAATCTATG+AGG | 0.573832 | 4_3:-46290252 | Msa0643380:CDS |
| TGCACAAAATCAGTCATTGA+CGG | 0.575384 | 4_3:+46289209 | None:intergenic |
| TCCATCCGGAAGCATAATGC+GGG | 0.582006 | 4_3:+46291723 | None:intergenic |
| AGGAAATGTGAAACCCTTTG+TGG | 0.583951 | 4_3:-46290192 | Msa0643380:CDS |
| GTACACAAACTCCCATATGA+AGG | 0.587384 | 4_3:-46289164 | Msa0643380:CDS |
| GGATCGCTCTCACCAAAACC+AGG | 0.589789 | 4_3:+46291434 | None:intergenic |
| GAGGCTGAGAGGGCCTTGCG+GGG | 0.592778 | 4_3:+46289076 | None:intergenic |
| ACCCGCATTATGCTTCCGGA+TGG | 0.593805 | 4_3:-46291724 | Msa0643380:exon |
| ATGTGAAATGGCCTTCATAT+GGG | 0.602865 | 4_3:+46289153 | None:intergenic |
| TTCCATCCGGAAGCATAATG+CGG | 0.604964 | 4_3:+46291722 | None:intergenic |
| CACAAAATCAGTCATTGACG+GGG | 0.606548 | 4_3:+46289211 | None:intergenic |
| AACCTGCAAGCCGAGAGGAA+AGG | 0.606711 | 4_3:+46291626 | None:intergenic |
| GATCATATGGGTTCACCATG+GGG | 0.606822 | 4_3:+46290740 | None:intergenic |
| GTGGAAGAATCAATTAGGCA+AGG | 0.615184 | 4_3:-46290212 | Msa0643380:CDS |
| AGTTTCTTATCAGGGAAGCA+TGG | 0.625370 | 4_3:-46290601 | Msa0643380:CDS |
| ACAGGGAATGGATGACAAAG+TGG | 0.625940 | 4_3:-46289237 | Msa0643380:intron |
| TCTATGAGGATTTCTGGCAA+AGG | 0.628041 | 4_3:-46290238 | Msa0643380:CDS |
| GCTTCCGGATGGAAGATACA+TGG | 0.631513 | 4_3:-46291713 | Msa0643380:CDS |
| TCAACCAAATCATGTCAACC+AGG | 0.633109 | 4_3:+46291832 | None:intergenic |
| AGGATCATATGGGTTCACCA+TGG | 0.635002 | 4_3:+46290738 | None:intergenic |
| CAAGAAGTAGTAGCAAGTAG+TGG | 0.638951 | 4_3:-46288996 | Msa0643380:CDS |
| TACATGGCATACAAGGAGCA+AGG | 0.639291 | 4_3:-46291697 | Msa0643380:CDS |
| GTGTAGTAAATATCTGTCTG+TGG | 0.641522 | 4_3:+46289108 | None:intergenic |
| AAAGAAATGCTGAGGCTGAG+AGG | 0.645314 | 4_3:+46289065 | None:intergenic |
| AAATGTGAAACCCTTTGTGG+AGG | 0.646017 | 4_3:-46290189 | Msa0643380:CDS |
| CTACTTCTAAAGAAATGCTG+AGG | 0.649194 | 4_3:+46289057 | None:intergenic |
| GATGATATTGGCCAGAACAA+CGG | 0.649642 | 4_3:+46288917 | None:intergenic |
| AAATACTTGCTTCTCAAGTG+GGG | 0.651959 | 4_3:+46291765 | None:intergenic |
| ATCATATGGGTTCACCATGG+GGG | 0.655135 | 4_3:+46290741 | None:intergenic |
| TTGTGTGTACTTCTAATCAG+TGG | 0.680829 | 4_3:+46288965 | None:intergenic |
| AGCATGGTCAGATTGACAGG+TGG | 0.689331 | 4_3:-46290585 | Msa0643380:CDS |
| CAAACAACCTGCAAGCCGAG+AGG | 0.700337 | 4_3:+46291621 | None:intergenic |
| ACAAAATCAGTCATTGACGG+GGG | 0.748115 | 4_3:+46289212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCATTTTTTAAATGAAA+TGG | + | chr4_3:46291822-46291841 | None:intergenic | 10.0% |
| !!! | TACTTCATTAAATTTAGTTT+AGG | - | chr4_3:46289451-46289470 | Msa0643380:intron | 15.0% |
| !!! | GTAAAATATTTAAAACTCTT+GGG | + | chr4_3:46290257-46290276 | None:intergenic | 15.0% |
| !!! | TGTAAAATATTTAAAACTCT+TGG | + | chr4_3:46290258-46290277 | None:intergenic | 15.0% |
| !!! | ATATTTTCATATTTGCAATT+TGG | + | chr4_3:46290635-46290654 | None:intergenic | 15.0% |
| !!! | ATGAAAATATTAGCTTTTAT+AGG | - | chr4_3:46290645-46290664 | Msa0643380:CDS | 15.0% |
| !!! | TGAAAATATTAGCTTTTATA+GGG | - | chr4_3:46290646-46290665 | Msa0643380:CDS | 15.0% |
| !!! | TCTAAAATGAGTTTAAAAAT+TGG | + | chr4_3:46290772-46290791 | None:intergenic | 15.0% |
| !!! | ACTTTTAACTTGACAAAATT+TGG | - | chr4_3:46289359-46289378 | Msa0643380:intron | 20.0% |
| !!! | TCTATTTCTCAATTTATTAC+CGG | - | chr4_3:46289664-46289683 | Msa0643380:intron | 20.0% |
| !! | AAGAAAAAAAAAGATAAGCA+AGG | + | chr4_3:46290035-46290054 | None:intergenic | 20.0% |
| !!! | AAATTCTTTTAAGTTCTCAT+AGG | - | chr4_3:46290865-46290884 | Msa0643380:intron | 20.0% |
| !! | AGTTAAATCAATAAACAAGA+CGG | - | chr4_3:46291161-46291180 | Msa0643380:intron | 20.0% |
| !!! | AAAAGTATATGTATGTGAAA+TGG | + | chr4_3:46291423-46291442 | None:intergenic | 20.0% |
| !!! | CATATAATTTGTGATGATAT+TGG | + | chr4_3:46291659-46291678 | None:intergenic | 20.0% |
| !! | TTGAATTTGCGTTTGAAATT+AGG | - | chr4_3:46289040-46289059 | Msa0643380:CDS | 25.0% |
| !! | CATGATAGTTGTTATTCAAA+AGG | + | chr4_3:46289415-46289434 | None:intergenic | 25.0% |
| ! | AAATCTGTGTTTACAAAAGT+TGG | - | chr4_3:46290212-46290231 | Msa0643380:CDS | 25.0% |
| ! | TTGTAAAAAAGTAACTCTCA+AGG | + | chr4_3:46290747-46290766 | None:intergenic | 25.0% |
| ! | TTTCTTGACTACAAATAATC+TGG | - | chr4_3:46291087-46291106 | Msa0643380:intron | 25.0% |
| ! | TACATACAAACAAACATAGA+GGG | + | chr4_3:46291243-46291262 | None:intergenic | 25.0% |
| ! | ATACATACAAACAAACATAG+AGG | + | chr4_3:46291244-46291263 | None:intergenic | 25.0% |
| !! | TCTAATTCAATTTGCTTTCT+GGG | - | chr4_3:46291266-46291285 | Msa0643380:intron | 25.0% |
| !! | CAGATATTTACTACACTTTT+TGG | - | chr4_3:46291460-46291479 | Msa0643380:CDS | 25.0% |
| AAAATACTTGCTTCTCAAGT+GGG | + | chr4_3:46288800-46288819 | None:intergenic | 30.0% | |
| AAAAATACTTGCTTCTCAAG+TGG | + | chr4_3:46288801-46288820 | None:intergenic | 30.0% | |
| ! | GTTGTTATTCAAAAGGTAAG+TGG | + | chr4_3:46289408-46289427 | None:intergenic | 30.0% |
| ! | ACTTGTTTAGAGTGAGTTAA+CGG | - | chr4_3:46289511-46289530 | Msa0643380:intron | 30.0% |
| !! | ATGAAGCACTGAAATATACA+CGG | + | chr4_3:46289724-46289743 | None:intergenic | 30.0% |
| GATGTTGTGTATTAACTTTC+AGG | - | chr4_3:46289783-46289802 | Msa0643380:intron | 30.0% | |
| TTGTCATCAAAGGATCATAT+GGG | + | chr4_3:46289836-46289855 | None:intergenic | 30.0% | |
| TTTGTCATCAAAGGATCATA+TGG | + | chr4_3:46289837-46289856 | None:intergenic | 30.0% | |
| TTAGTCAACATGTCCATATA+TGG | - | chr4_3:46290053-46290072 | Msa0643380:CDS | 30.0% | |
| ATGTACATAGATAGAAATGC+AGG | + | chr4_3:46290089-46290108 | None:intergenic | 30.0% | |
| TGGATGCTGATAAGAATTTA+TGG | - | chr4_3:46290138-46290157 | Msa0643380:CDS | 30.0% | |
| TGCAGAAACGAAAATACAAA+AGG | - | chr4_3:46290446-46290465 | Msa0643380:intron | 30.0% | |
| ACAAAAGGAATGTGCTTAAT+TGG | - | chr4_3:46290461-46290480 | Msa0643380:intron | 30.0% | |
| TAAGAAGAGAGAAATATGAC+AGG | + | chr4_3:46290795-46290814 | None:intergenic | 30.0% | |
| TTTAACCGTCCAATCTTAAT+AGG | + | chr4_3:46290974-46290993 | None:intergenic | 30.0% | |
| TTTACCAAGCTTAAATCAGA+CGG | - | chr4_3:46291033-46291052 | Msa0643380:intron | 30.0% | |
| ! | CTCTAATTCAATTTGCTTTC+TGG | - | chr4_3:46291265-46291284 | Msa0643380:intron | 30.0% |
| TAGTCTGATATGACAACAAT+TGG | - | chr4_3:46291776-46291795 | Msa0643380:five_prime_UTR | 30.0% | |
| AATACCTGGTTGACATGATT+TGG | - | chr4_3:46288725-46288744 | Msa0643380:three_prime_UTR | 35.0% | |
| AAATACTTGCTTCTCAAGTG+GGG | + | chr4_3:46288799-46288818 | None:intergenic | 35.0% | |
| TCAACAATGCCTCAAACTAA+GGG | + | chr4_3:46289009-46289028 | None:intergenic | 35.0% | |
| TTCAACAATGCCTCAAACTA+AGG | + | chr4_3:46289010-46289029 | None:intergenic | 35.0% | |
| ! | CGTTTGAAATTAGGAATTCC+TGG | - | chr4_3:46289049-46289068 | Msa0643380:CDS | 35.0% |
| ATCAGTGAATCTTTAACACC+AGG | + | chr4_3:46289070-46289089 | None:intergenic | 35.0% | |
| ! | TGGTGTTAAAGATTCACTGA+TGG | - | chr4_3:46289069-46289088 | Msa0643380:CDS | 35.0% |
| GATTCACTGATGGAAGAATT+TGG | - | chr4_3:46289079-46289098 | Msa0643380:CDS | 35.0% | |
| TTGATTACTTATGATCTGCC+TGG | - | chr4_3:46289109-46289128 | Msa0643380:CDS | 35.0% | |
| !!! | GTTGACAAGTTTTGGATCAT+TGG | - | chr4_3:46289214-46289233 | Msa0643380:CDS | 35.0% |
| TTAATACCTGCAAGTCTATC+AGG | + | chr4_3:46289286-46289305 | None:intergenic | 35.0% | |
| TTGTGTCACATCAATAGAAC+AGG | - | chr4_3:46289565-46289584 | Msa0643380:intron | 35.0% | |
| CAGATCACTTATATGCTGTT+TGG | + | chr4_3:46289760-46289779 | None:intergenic | 35.0% | |
| TAGAAGAAACCAAGAAGTCT+AGG | + | chr4_3:46289933-46289952 | None:intergenic | 35.0% | |
| TATCAGCGAAGTTTCTTATC+AGG | - | chr4_3:46289951-46289970 | Msa0643380:intron | 35.0% | |
| ATCAGCGAAGTTTCTTATCA+GGG | - | chr4_3:46289952-46289971 | Msa0643380:intron | 35.0% | |
| TGTCTTTATCTCTTGGAAAG+AGG | - | chr4_3:46290000-46290019 | Msa0643380:intron | 35.0% | |
| GTCTTTATCTCTTGGAAAGA+GGG | - | chr4_3:46290001-46290020 | Msa0643380:intron | 35.0% | |
| AGGATGGTATAAGCCATATA+TGG | + | chr4_3:46290069-46290088 | None:intergenic | 35.0% | |
| ACATAGATAGAAATGCAGGA+TGG | + | chr4_3:46290085-46290104 | None:intergenic | 35.0% | |
| TATCAGCATCCATCTAACTA+GGG | + | chr4_3:46290130-46290149 | None:intergenic | 35.0% | |
| TTATCAGCATCCATCTAACT+AGG | + | chr4_3:46290131-46290150 | None:intergenic | 35.0% | |
| AATTACAGAACCCAACTCAA+TGG | - | chr4_3:46290166-46290185 | Msa0643380:CDS | 35.0% | |
| ATTAGCTGAACCATTGAGTT+GGG | + | chr4_3:46290179-46290198 | None:intergenic | 35.0% | |
| AATTAGCTGAACCATTGAGT+TGG | + | chr4_3:46290180-46290199 | None:intergenic | 35.0% | |
| ! | TTTACAAAAGTTGGTTCCGA+GGG | - | chr4_3:46290221-46290240 | Msa0643380:CDS | 35.0% |
| ATCCAATCTATGAGGATTTC+TGG | - | chr4_3:46290317-46290336 | Msa0643380:intron | 35.0% | |
| ! | ATTTTCGTTTCTGCAACTTG+AGG | + | chr4_3:46290441-46290460 | None:intergenic | 35.0% |
| ! | GAATGTGCTTAATTGGCTTA+AGG | - | chr4_3:46290468-46290487 | Msa0643380:intron | 35.0% |
| GTTATGAAAATGCATGCAGA+AGG | + | chr4_3:46290575-46290594 | None:intergenic | 35.0% | |
| ! | GATGGTAATGAGTGGATTTA+TGG | + | chr4_3:46290820-46290839 | None:intergenic | 35.0% |
| ! | AAAGAATTTTACACCGCTGA+GGG | + | chr4_3:46290854-46290873 | None:intergenic | 35.0% |
| ! | AAAAGAATTTTACACCGCTG+AGG | + | chr4_3:46290855-46290874 | None:intergenic | 35.0% |
| ACAGTCCTATTAAGATTGGA+CGG | - | chr4_3:46290966-46290985 | Msa0643380:intron | 35.0% | |
| ATTGCAGTACAATTGTTGAC+AGG | - | chr4_3:46291306-46291325 | Msa0643380:CDS | 35.0% | |
| TTGCAGTACAATTGTTGACA+GGG | - | chr4_3:46291307-46291326 | Msa0643380:CDS | 35.0% | |
| TGCACAAAATCAGTCATTGA+CGG | + | chr4_3:46291355-46291374 | None:intergenic | 35.0% | |
| ATGTGAAATGGCCTTCATAT+GGG | + | chr4_3:46291411-46291430 | None:intergenic | 35.0% | |
| TATGTGAAATGGCCTTCATA+TGG | + | chr4_3:46291412-46291431 | None:intergenic | 35.0% | |
| GTGTAGTAAATATCTGTCTG+TGG | + | chr4_3:46291456-46291475 | None:intergenic | 35.0% | |
| ! | CTACTTCTAAAGAAATGCTG+AGG | + | chr4_3:46291507-46291526 | None:intergenic | 35.0% |
| TTGTGTGTACTTCTAATCAG+TGG | + | chr4_3:46291599-46291618 | None:intergenic | 35.0% | |
| !! | ATTTGTTTTTCCCGTTGTTC+TGG | - | chr4_3:46291633-46291652 | Msa0643380:CDS | 35.0% |
| AGTTCAATAGCCCAAAAACA+GGG | + | chr4_3:46291757-46291776 | None:intergenic | 35.0% | |
| TAGTTCAATAGCCCAAAAAC+AGG | + | chr4_3:46291758-46291777 | None:intergenic | 35.0% | |
| TCAACCAAATCATGTCAACC+AGG | + | chr4_3:46288732-46288751 | None:intergenic | 40.0% | |
| TATGCCATGTATCTTCCATC+CGG | + | chr4_3:46288855-46288874 | None:intergenic | 40.0% | |
| TGGAAGATACATGGCATACA+AGG | - | chr4_3:46288857-46288876 | Msa0643380:three_prime_UTR | 40.0% | |
| ! | ATACAAGGAGCAAGGTGTTT+CGG | - | chr4_3:46288872-46288891 | Msa0643380:three_prime_UTR | 40.0% |
| CTCATACTTTCCTTTCCTCT+CGG | - | chr4_3:46288925-46288944 | Msa0643380:three_prime_UTR | 40.0% | |
| ! | TTGTTTCCACCCTTAGTTTG+AGG | - | chr4_3:46288997-46289016 | Msa0643380:CDS | 40.0% |
| ! | ACTTATGATCTGCCTGGTTT+TGG | - | chr4_3:46289115-46289134 | Msa0643380:CDS | 40.0% |
| GACGATTCCAGATTTCGTTT+GGG | + | chr4_3:46289157-46289176 | None:intergenic | 40.0% | |
| TGACGATTCCAGATTTCGTT+TGG | + | chr4_3:46289158-46289177 | None:intergenic | 40.0% | |
| !!! | TCGTTTTTAGCTGATGCTCT+TGG | - | chr4_3:46289190-46289209 | Msa0643380:CDS | 40.0% |
| !!! | CTCTTGGTGTTGACAAGTTT+TGG | - | chr4_3:46289206-46289225 | Msa0643380:CDS | 40.0% |
| ! | TGGATCATTGGTTACTCAAG+TGG | - | chr4_3:46289226-46289245 | Msa0643380:CDS | 40.0% |
| TACATACCTGATAGACTTGC+AGG | - | chr4_3:46289277-46289296 | Msa0643380:intron | 40.0% | |
| TCAGTGAGAATAAGTGTGTC+TGG | - | chr4_3:46289593-46289612 | Msa0643380:intron | 40.0% | |
| CTCTCTTCGTTTGTCATCAA+AGG | + | chr4_3:46289846-46289865 | None:intergenic | 40.0% | |
| GACGAAAAACCTGGAACAAA+TGG | - | chr4_3:46289865-46289884 | Msa0643380:intron | 40.0% | |
| AGTTTCTTATCAGGGAAGCA+TGG | - | chr4_3:46289960-46289979 | Msa0643380:intron | 40.0% | |
| TATCTCTTGGAAAGAGGGTA+AGG | - | chr4_3:46290006-46290025 | Msa0643380:intron | 40.0% | |
| TCGTGTTAACCCTAGTTAGA+TGG | - | chr4_3:46290118-46290137 | Msa0643380:CDS | 40.0% | |
| ! | GTTTACAAAAGTTGGTTCCG+AGG | - | chr4_3:46290220-46290239 | Msa0643380:CDS | 40.0% |
| ! | CAGATCTCATTGCCTTTTTC+AGG | - | chr4_3:46290276-46290295 | Msa0643380:intron | 40.0% |
| TCAGTGCTTTGTCCTGAAAA+AGG | + | chr4_3:46290291-46290310 | None:intergenic | 40.0% | |
| !!! | TTTTCAGGACAAAGCACTGA+TGG | - | chr4_3:46290291-46290310 | Msa0643380:intron | 40.0% |
| GATGGAAGATCCAATCTATG+AGG | - | chr4_3:46290309-46290328 | Msa0643380:intron | 40.0% | |
| TGCCAGAAATCCTCATAGAT+TGG | + | chr4_3:46290322-46290341 | None:intergenic | 40.0% | |
| !! | TCTATGAGGATTTCTGGCAA+AGG | - | chr4_3:46290323-46290342 | Msa0643380:intron | 40.0% |
| !! | CTATGAGGATTTCTGGCAAA+GGG | - | chr4_3:46290324-46290343 | Msa0643380:intron | 40.0% |
| GGGATGTGGAAGAATCAATT+AGG | - | chr4_3:46290344-46290363 | Msa0643380:intron | 40.0% | |
| GTGGAAGAATCAATTAGGCA+AGG | - | chr4_3:46290349-46290368 | Msa0643380:intron | 40.0% | |
| AGGAAATGTGAAACCCTTTG+TGG | - | chr4_3:46290369-46290388 | Msa0643380:intron | 40.0% | |
| AAATGTGAAACCCTTTGTGG+AGG | - | chr4_3:46290372-46290391 | Msa0643380:intron | 40.0% | |
| TCTGCAACTTGAGGTCTAAA+AGG | + | chr4_3:46290432-46290451 | None:intergenic | 40.0% | |
| ! | GGCAATTTTCACTGAAACTC+AGG | - | chr4_3:46290489-46290508 | Msa0643380:intron | 40.0% |
| ! | CACTGAAACTCAGGAGTATA+CGG | - | chr4_3:46290498-46290517 | Msa0643380:intron | 40.0% |
| ! | ACTGAAACTCAGGAGTATAC+GGG | - | chr4_3:46290499-46290518 | Msa0643380:intron | 40.0% |
| TTCTCGGTCCAATACACATA+TGG | - | chr4_3:46290524-46290543 | Msa0643380:intron | 40.0% | |
| CTCACTTGCCATATGTGTAT+TGG | + | chr4_3:46290535-46290554 | None:intergenic | 40.0% | |
| ! | AGAAGCATACAGCTCAATTG+AGG | - | chr4_3:46290890-46290909 | Msa0643380:intron | 40.0% |
| CAATCTTAATAGGACTGTCC+AGG | + | chr4_3:46290964-46290983 | None:intergenic | 40.0% | |
| CTGGACAGTCCTATTAAGAT+TGG | - | chr4_3:46290962-46290981 | Msa0643380:intron | 40.0% | |
| TAAATCAGACGGTCTGCATT+TGG | - | chr4_3:46291044-46291063 | Msa0643380:intron | 40.0% | |
| GTACAATTGTTGACAGGGAA+TGG | - | chr4_3:46291312-46291331 | Msa0643380:CDS | 40.0% | |
| ACAAAATCAGTCATTGACGG+GGG | + | chr4_3:46291352-46291371 | None:intergenic | 40.0% | |
| CACAAAATCAGTCATTGACG+GGG | + | chr4_3:46291353-46291372 | None:intergenic | 40.0% | |
| GCACAAAATCAGTCATTGAC+GGG | + | chr4_3:46291354-46291373 | None:intergenic | 40.0% | |
| GTACACAAACTCCCATATGA+AGG | - | chr4_3:46291397-46291416 | Msa0643380:CDS | 40.0% | |
| !! | AAGTTCAACGTTGGCTTCTA+GGG | + | chr4_3:46291539-46291558 | None:intergenic | 40.0% |
| ! | TTGCTGTTCAAGTTCAACGT+TGG | + | chr4_3:46291548-46291567 | None:intergenic | 40.0% |
| CAAGAAGTAGTAGCAAGTAG+TGG | - | chr4_3:46291565-46291584 | Msa0643380:intron | 40.0% | |
| ATGATATTGGCCAGAACAAC+GGG | + | chr4_3:46291646-46291665 | None:intergenic | 40.0% | |
| GATGATATTGGCCAGAACAA+CGG | + | chr4_3:46291647-46291666 | None:intergenic | 40.0% | |
| GTTCAATAGCCCAAAAACAG+GGG | + | chr4_3:46291756-46291775 | None:intergenic | 40.0% | |
| ! | TAGCTAGTCTGCTCAATACC+TGG | - | chr4_3:46288711-46288730 | Msa0643380:three_prime_UTR | 45.0% |
| ! | TTCCATCCGGAAGCATAATG+CGG | + | chr4_3:46288842-46288861 | None:intergenic | 45.0% |
| TACATGGCATACAAGGAGCA+AGG | - | chr4_3:46288864-46288883 | Msa0643380:three_prime_UTR | 45.0% | |
| ! | CGAGAGGAAAGGAAAGTATG+AGG | + | chr4_3:46288927-46288946 | None:intergenic | 45.0% |
| ACAATGCCTCAAACTAAGGG+TGG | + | chr4_3:46289006-46289025 | None:intergenic | 45.0% | |
| TCCTCATCCCAAACGAAATC+TGG | - | chr4_3:46289147-46289166 | Msa0643380:CDS | 45.0% | |
| ! | TCCAGATTTCGTTTGGGATG+AGG | + | chr4_3:46289151-46289170 | None:intergenic | 45.0% |
| AAGTGGAAGCAAGCATGCTT+GGG | - | chr4_3:46289243-46289262 | Msa0643380:intron | 45.0% | |
| ATCATATGGGTTCACCATGG+GGG | + | chr4_3:46289823-46289842 | None:intergenic | 45.0% | |
| GATCATATGGGTTCACCATG+GGG | + | chr4_3:46289824-46289843 | None:intergenic | 45.0% | |
| GGATCATATGGGTTCACCAT+GGG | + | chr4_3:46289825-46289844 | None:intergenic | 45.0% | |
| AGGATCATATGGGTTCACCA+TGG | + | chr4_3:46289826-46289845 | None:intergenic | 45.0% | |
| ACGAAGAGAGACGAAAAACC+TGG | - | chr4_3:46289856-46289875 | Msa0643380:intron | 45.0% | |
| ! | TTTTCGCGTCCATTTGTTCC+AGG | + | chr4_3:46289877-46289896 | None:intergenic | 45.0% |
| CGAAGCTTTCCTAGACTTCT+TGG | - | chr4_3:46289921-46289940 | Msa0643380:intron | 45.0% | |
| AGGTGGCTGTCTTTATCTCT+TGG | - | chr4_3:46289993-46290012 | Msa0643380:intron | 45.0% | |
| AAAGCAGCTTCCTCCACAAA+GGG | + | chr4_3:46290385-46290404 | None:intergenic | 45.0% | |
| TGCTTTGCAGGTCTCGAATT+GGG | - | chr4_3:46290399-46290418 | Msa0643380:intron | 45.0% | |
| ! | CAGGAGTATACGGGATTTCT+CGG | - | chr4_3:46290508-46290527 | Msa0643380:intron | 45.0% |
| ! | ATTTTACACCGCTGAGGGAA+GGG | + | chr4_3:46290849-46290868 | None:intergenic | 45.0% |
| ! | AATTTTACACCGCTGAGGGA+AGG | + | chr4_3:46290850-46290869 | None:intergenic | 45.0% |
| ATCTCGATTCTCTGCTGTCA+GGG | - | chr4_3:46290913-46290932 | Msa0643380:intron | 45.0% | |
| CAGACCGTCTGATTTAAGCT+TGG | + | chr4_3:46291040-46291059 | None:intergenic | 45.0% | |
| ACAGGGAATGGATGACAAAG+TGG | - | chr4_3:46291324-46291343 | Msa0643380:CDS | 45.0% | |
| AAGAAATGCTGAGGCTGAGA+GGG | + | chr4_3:46291498-46291517 | None:intergenic | 45.0% | |
| AAAGAAATGCTGAGGCTGAG+AGG | + | chr4_3:46291499-46291518 | None:intergenic | 45.0% | |
| !! | ACGTTGGCTTCTAGGGTAAT+TGG | + | chr4_3:46291532-46291551 | None:intergenic | 45.0% |
| !! | CAAGTTCAACGTTGGCTTCT+AGG | + | chr4_3:46291540-46291559 | None:intergenic | 45.0% |
| TAGTTGAGCTTCATCTCCGA+TGG | - | chr4_3:46291696-46291715 | Msa0643380:CDS | 45.0% | |
| TCTTTCCTATGCTGCTCCAT+CGG | + | chr4_3:46291715-46291734 | None:intergenic | 45.0% | |
| ATAATGCGGGTAGCACTAGC+AGG | + | chr4_3:46288828-46288847 | None:intergenic | 50.0% | |
| TGCTACCCGCATTATGCTTC+CGG | - | chr4_3:46288833-46288852 | Msa0643380:three_prime_UTR | 50.0% | |
| ! | TCCATCCGGAAGCATAATGC+GGG | + | chr4_3:46288841-46288860 | None:intergenic | 50.0% |
| GCTTCCGGATGGAAGATACA+TGG | - | chr4_3:46288848-46288867 | Msa0643380:three_prime_UTR | 50.0% | |
| CAAGTGGAAGCAAGCATGCT+TGG | - | chr4_3:46289242-46289261 | Msa0643380:intron | 50.0% | |
| TGACACTGACACGTAGAGAC+CGG | + | chr4_3:46289686-46289705 | None:intergenic | 50.0% | |
| TGTCAGTGTCATGTCGTGTC+TGG | - | chr4_3:46289695-46289714 | Msa0643380:intron | 50.0% | |
| ! | GGAAGCATGGTCAGATTGAC+AGG | - | chr4_3:46289973-46289992 | Msa0643380:intron | 50.0% |
| AGCATGGTCAGATTGACAGG+TGG | - | chr4_3:46289976-46289995 | Msa0643380:intron | 50.0% | |
| ! | AAAGTTGGTTCCGAGGGCAT+AGG | - | chr4_3:46290227-46290246 | Msa0643380:CDS | 50.0% |
| !! | GGATTTCTGGCAAAGGGATG+TGG | - | chr4_3:46290330-46290349 | Msa0643380:intron | 50.0% |
| CAAAGCAGCTTCCTCCACAA+AGG | + | chr4_3:46290386-46290405 | None:intergenic | 50.0% | |
| CTGCTTTGCAGGTCTCGAAT+TGG | - | chr4_3:46290398-46290417 | Msa0643380:intron | 50.0% | |
| GCTTTGCAGGTCTCGAATTG+GGG | - | chr4_3:46290400-46290419 | Msa0643380:intron | 50.0% | |
| ! | GGGAAGGAGATGGTAATGAG+TGG | + | chr4_3:46290828-46290847 | None:intergenic | 50.0% |
| ! | TTTTACACCGCTGAGGGAAG+GGG | + | chr4_3:46290848-46290867 | None:intergenic | 50.0% |
| GATCTCGATTCTCTGCTGTC+AGG | - | chr4_3:46290912-46290931 | Msa0643380:intron | 50.0% | |
| TCATGTGCGTGAGCGATAGA+GGG | + | chr4_3:46291115-46291134 | None:intergenic | 50.0% | |
| TTCATGTGCGTGAGCGATAG+AGG | + | chr4_3:46291116-46291135 | None:intergenic | 50.0% | |
| TTTGTGCATCGCGTACTACC+TGG | - | chr4_3:46291367-46291386 | Msa0643380:CDS | 50.0% | |
| AGTTTGTGTACTGCAGCTCC+AGG | + | chr4_3:46291388-46291407 | None:intergenic | 50.0% | |
| !!! | ACACTTTTTGGAACCCCGCA+AGG | - | chr4_3:46291472-46291491 | Msa0643380:CDS | 50.0% |
| ! | AGTGTTTCCGCCCCTGTTTT+TGG | - | chr4_3:46291743-46291762 | Msa0643380:five_prime_UTR | 50.0% |
| !! | GTGTTTCCGCCCCTGTTTTT+GGG | - | chr4_3:46291744-46291763 | Msa0643380:five_prime_UTR | 50.0% |
| CAATAGCCCAAAAACAGGGG+CGG | + | chr4_3:46291753-46291772 | None:intergenic | 50.0% | |
| ACCCGCATTATGCTTCCGGA+TGG | - | chr4_3:46288837-46288856 | Msa0643380:three_prime_UTR | 55.0% | |
| ! | TTCCTTTCCTCTCGGCTTGC+AGG | - | chr4_3:46288933-46288952 | Msa0643380:three_prime_UTR | 55.0% |
| AACCTGCAAGCCGAGAGGAA+AGG | + | chr4_3:46288938-46288957 | None:intergenic | 55.0% | |
| CAAACAACCTGCAAGCCGAG+AGG | + | chr4_3:46288943-46288962 | None:intergenic | 55.0% | |
| GGATCGCTCTCACCAAAACC+AGG | + | chr4_3:46289130-46289149 | None:intergenic | 55.0% | |
| GTTCACCATGGGGGCAAACA+TGG | + | chr4_3:46289814-46289833 | None:intergenic | 55.0% | |
| CTTGGGATAGCCTATGCCCT+CGG | + | chr4_3:46290240-46290259 | None:intergenic | 55.0% | |
| ! | TGTGGAGGAAGCTGCTTTGC+AGG | - | chr4_3:46290387-46290406 | Msa0643380:intron | 55.0% |
| ! | GCTTGCTAACGGCATGACCA+GGG | + | chr4_3:46290942-46290961 | None:intergenic | 55.0% |
| !! | GGACTGTCCAGGCTTGCTAA+CGG | + | chr4_3:46290953-46290972 | None:intergenic | 55.0% |
| CATCTCCGATGGAGCAGCAT+AGG | - | chr4_3:46291707-46291726 | Msa0643380:CDS | 55.0% | |
| TGCTGCCATGTTTGCCCCCA+TGG | - | chr4_3:46289806-46289825 | Msa0643380:intron | 60.0% | |
| CTGAGGGAAGGGGAAGGAGA+TGG | + | chr4_3:46290838-46290857 | None:intergenic | 60.0% | |
| TCTCCTTCCCCTTCCCTCAG+CGG | - | chr4_3:46290838-46290857 | Msa0643380:intron | 60.0% | |
| CTCTGCTGTCAGGGAATCCC+TGG | - | chr4_3:46290922-46290941 | Msa0643380:intron | 60.0% | |
| !! | GGCTTGCTAACGGCATGACC+AGG | + | chr4_3:46290943-46290962 | None:intergenic | 60.0% |
| GGTCATGCCGTTAGCAAGCC+TGG | - | chr4_3:46290943-46290962 | Msa0643380:intron | 60.0% | |
| ACACCGCTGAGGGAAGGGGA+AGG | + | chr4_3:46290844-46290863 | None:intergenic | 65.0% | |
| TGAGGCTGAGAGGGCCTTGC+GGG | + | chr4_3:46291489-46291508 | None:intergenic | 65.0% | |
| CTGAGGCTGAGAGGGCCTTG+CGG | + | chr4_3:46291490-46291509 | None:intergenic | 65.0% | |
| GAGGCTGAGAGGGCCTTGCG+GGG | + | chr4_3:46291488-46291507 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 46288688 | 46291895 | 46288688 | ID=Msa0643380;Name=Msa0643380 |
| chr4_3 | mRNA | 46288688 | 46291895 | 46288688 | ID=Msa0643380-mRNA-1;Parent=Msa0643380;Name=Msa0643380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=158|1|1|1|1|1|5|289|364 |
| chr4_3 | exon | 46288688 | 46289255 | 46288688 | ID=Msa0643380-mRNA-1:exon:10776;Parent=Msa0643380-mRNA-1 |
| chr4_3 | exon | 46290034 | 46290285 | 46290034 | ID=Msa0643380-mRNA-1:exon:10775;Parent=Msa0643380-mRNA-1 |
| chr4_3 | exon | 46290561 | 46290778 | 46290561 | ID=Msa0643380-mRNA-1:exon:10774;Parent=Msa0643380-mRNA-1 |
| chr4_3 | exon | 46291285 | 46291521 | 46291285 | ID=Msa0643380-mRNA-1:exon:10773;Parent=Msa0643380-mRNA-1 |
| chr4_3 | exon | 46291629 | 46291895 | 46291629 | ID=Msa0643380-mRNA-1:exon:10772;Parent=Msa0643380-mRNA-1 |
| chr4_3 | five_prime_UTR | 46291738 | 46291895 | 46291738 | ID=Msa0643380-mRNA-1:five_prime_utr;Parent=Msa0643380-mRNA-1 |
| chr4_3 | CDS | 46291629 | 46291737 | 46291629 | ID=Msa0643380-mRNA-1:cds;Parent=Msa0643380-mRNA-1 |
| chr4_3 | CDS | 46291285 | 46291521 | 46291285 | ID=Msa0643380-mRNA-1:cds;Parent=Msa0643380-mRNA-1 |
| chr4_3 | CDS | 46290561 | 46290778 | 46290561 | ID=Msa0643380-mRNA-1:cds;Parent=Msa0643380-mRNA-1 |
| chr4_3 | CDS | 46290034 | 46290285 | 46290034 | ID=Msa0643380-mRNA-1:cds;Parent=Msa0643380-mRNA-1 |
| chr4_3 | CDS | 46288977 | 46289255 | 46288977 | ID=Msa0643380-mRNA-1:cds;Parent=Msa0643380-mRNA-1 |
| chr4_3 | three_prime_UTR | 46288688 | 46288976 | 46288688 | ID=Msa0643380-mRNA-1:three_prime_utr;Parent=Msa0643380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
