AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548160 MtrunA17_Chr4g0029971 96.679 271 9 0 1 271 1 271 0.0 551
Msa0548160 MtrunA17_Chr7g0263721 56.693 254 101 3 16 268 56 301 7.82e-103 308
Msa0548160 MtrunA17_Chr4g0026421 46.622 148 74 3 104 250 30 173 1.68e-36 133
Msa0548160 MtrunA17_Chr1g0178721 40.230 174 94 4 86 254 38 206 1.09e-34 128
Msa0548160 MtrunA17_Chr3g0136021 42.857 154 79 5 123 268 129 281 8.29e-34 127
Msa0548160 MtrunA17_Chr1g0178741 41.830 153 86 2 119 268 93 245 6.63e-33 124
Msa0548160 MtrunA17_Chr2g0321351 43.137 153 81 3 122 269 47 198 1.80e-32 122
Msa0548160 MtrunA17_Chr2g0321341 40.816 147 85 2 119 264 36 181 8.42e-32 120
Msa0548160 MtrunA17_Chr1g0171181 44.444 135 72 2 119 250 36 170 1.45e-30 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548160 AT3G09690.1 59.848 264 98 2 9 271 57 313 1.27e-111 332
Msa0548160 AT3G09690.2 59.848 264 98 2 9 271 57 313 1.27e-111 332
Msa0548160 AT5G02970.1 56.154 260 106 2 13 271 58 310 1.27e-103 311
Msa0548160 AT3G44510.3 47.059 153 72 5 124 268 8 159 3.10e-36 129
Msa0548160 AT3G54240.1 41.401 157 89 2 119 272 40 196 7.00e-35 129
Msa0548160 AT3G44510.2 47.059 153 72 5 124 268 8 159 1.06e-34 127
Msa0548160 AT5G22460.2 39.881 168 95 3 88 250 1 167 7.71e-34 125
Msa0548160 AT5G22460.3 39.881 168 95 3 88 250 1 167 7.71e-34 125
Msa0548160 AT5G22460.1 39.881 168 95 3 88 250 1 167 7.71e-34 125
Msa0548160 AT1G08310.3 47.368 133 68 2 119 250 5 136 2.16e-31 117
Msa0548160 AT1G08310.1 47.368 133 68 2 119 250 5 136 3.95e-31 118
Msa0548160 AT1G08310.2 46.667 135 69 2 119 250 5 139 1.04e-30 117
Msa0548160 AT1G74280.1 43.796 137 74 2 119 252 56 192 4.85e-30 116
Msa0548160 AT2G36290.2 40.120 167 89 4 93 250 8 172 2.77e-28 111
Msa0548160 AT1G74300.1 43.066 137 75 2 119 252 39 175 3.10e-28 110
Msa0548160 AT3G48410.2 38.202 178 92 5 82 250 75 243 3.13e-28 112
Msa0548160 AT3G48410.1 38.202 178 92 5 82 250 33 201 3.49e-28 111
Msa0548160 AT2G36290.1 40.120 167 89 4 93 250 22 186 3.53e-28 111
Msa0548160 AT3G03240.1 37.908 153 87 3 124 269 37 188 1.44e-27 108
Msa0548160 AT1G74290.1 42.446 139 75 3 119 252 56 194 1.53e-26 107
Msa0548160 AT3G03230.1 40.625 128 74 2 124 250 37 163 2.37e-24 100
Msa0548160 AT1G74300.2 48.684 76 38 1 178 252 1 76 8.70e-17 78.2

Find 129 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCATTGTTAAGAAATT+TGG 0.136021 4_1:+41881536 Msa0548160:CDS
ACAAAAGGAATGTGCTTAAT+TGG 0.161569 4_1:+41884432 Msa0548160:three_prime_UTR
TATCAGCGAAGTTTCTTATC+AGG 0.205500 4_1:+41883919 Msa0548160:three_prime_UTR
CTCTTGGTGTTGACAAGTTT+TGG 0.207857 4_1:+41883176 Msa0548160:CDS
CAAGTTCAACGTTGGCTTCT+AGG 0.207888 4_1:-41885508 None:intergenic
ATCCAATCTATGAGGATTTC+TGG 0.211014 4_1:+41884289 Msa0548160:three_prime_UTR
TGTGGAGGAAGCTGCTTTGC+AGG 0.230425 4_1:+41884359 Msa0548160:three_prime_UTR
TTCCTTTCCTCTCGGCTTGC+AGG 0.230918 4_1:+41882903 Msa0548160:CDS
TGCTTTGCAGGTCTCGAATT+GGG 0.231694 4_1:+41884371 Msa0548160:three_prime_UTR
CACTGAAACTCAGGAGTATA+CGG 0.248631 4_1:+41884469 Msa0548160:three_prime_UTR
TTGGGGTGGAAATTTGAAAT+AGG 0.248833 4_1:-41881193 None:intergenic
CGAAGCTTTCCTAGACTTCT+TGG 0.254206 4_1:+41883889 Msa0548160:three_prime_UTR
ACGTTGGCTTCTAGGGTAAT+TGG 0.261598 4_1:-41885500 None:intergenic
CTAACTGTAGAATTCTTAAA+AGG 0.264307 4_1:+41881473 Msa0548160:CDS
GTTAAGAAATTTGGAAAGAT+TGG 0.278897 4_1:+41881545 Msa0548160:CDS
ACTTATGATCTGCCTGGTTT+TGG 0.280877 4_1:+41883085 Msa0548160:CDS
CATATAATTTGTGATGATAT+TGG 0.288185 4_1:-41885627 None:intergenic
TGAGGCTGAGAGGGCCTTGC+GGG 0.293815 4_1:-41885457 None:intergenic
TCCTCATCCCAAACGAAATC+TGG 0.315816 4_1:+41883117 Msa0548160:CDS
TTAATACCTGCAAGTCTATC+AGG 0.327430 4_1:-41883253 None:intergenic
TGACGATTCCAGATTTCGTT+TGG 0.334193 4_1:-41883125 None:intergenic
CTGCTTTGCAGGTCTCGAAT+TGG 0.353135 4_1:+41884370 Msa0548160:three_prime_UTR
CGTTTGAAATTAGGAATTCC+TGG 0.355664 4_1:+41883019 Msa0548160:intron
TACATACCTGATAGACTTGC+AGG 0.361619 4_1:+41883247 Msa0548160:CDS
TGCTACCCGCATTATGCTTC+CGG 0.364526 4_1:+41882803 Msa0548160:CDS
TGCCAGAAATCCTCATAGAT+TGG 0.373531 4_1:-41884291 None:intergenic
AAATTGAGTGGTTGTGTGTT+GGG 0.383170 4_1:-41881211 None:intergenic
TTTGTCATCAAAGGATCATA+TGG 0.395653 4_1:-41883803 None:intergenic
CAGGAGTATACGGGATTTCT+CGG 0.400274 4_1:+41884479 Msa0548160:three_prime_UTR
GGGACAAAGAAATTAAGAAA+TGG 0.406300 4_1:-41881172 None:intergenic
GACGATTCCAGATTTCGTTT+GGG 0.408411 4_1:-41883124 None:intergenic
CTCATACTTTCCTTTCCTCT+CGG 0.410239 4_1:+41882895 Msa0548160:CDS
ATGATATTGGCCAGAACAAC+GGG 0.413247 4_1:-41885614 None:intergenic
GTTTCTTTACTTGCTTTCTC+AGG 0.414312 4_1:+41881677 Msa0548160:CDS
CAAGTGGAAGCAAGCATGCT+TGG 0.416127 4_1:+41883212 Msa0548160:CDS
GACGAAGAACCTGGAACAAA+TGG 0.419319 4_1:+41883834 Msa0548160:CDS
GGGATGTGGAAGAATCAATT+AGG 0.420004 4_1:+41884316 Msa0548160:three_prime_UTR
GAATGTGCTTAATTGGCTTA+AGG 0.424123 4_1:+41884439 Msa0548160:three_prime_UTR
TGAAGTGGGTCTTTATCTTC+AGG 0.424536 4_1:-41881632 None:intergenic
ATACAAGGAGCAAGGTGTTT+CGG 0.426151 4_1:+41882842 Msa0548160:CDS
CTCTCTTCGTTTGTCATCAA+AGG 0.426304 4_1:-41883812 None:intergenic
TTAAGAAATTTGGAAAGATT+GGG 0.427485 4_1:+41881546 Msa0548160:CDS
AAAAGTATATATATGTGAAA+TGG 0.431214 4_1:-41885391 None:intergenic
TGGGGTGGAAATTTGAAATA+GGG 0.431236 4_1:-41881192 None:intergenic
TGTGTAAGAGAGTTCATGAT+TGG 0.436128 4_1:+41881440 Msa0548160:CDS
GATTCACTGATGGAAGAGTT+TGG 0.439690 4_1:+41883049 Msa0548160:CDS
CTCACTTGCCATATGTGTAT+TGG 0.440378 4_1:-41884503 None:intergenic
AGGTGGCTGTCTTTATCTCT+TGG 0.445446 4_1:+41883961 Msa0548160:three_prime_UTR
TAGTCTGATATGACAACAAT+TGG 0.449971 4_1:+41885746 Msa0548160:three_prime_UTR
GGACAAAGAAATTAAGAAAT+GGG 0.451567 4_1:-41881171 None:intergenic
ACGAAGAGAGACGAAGAACC+TGG 0.455949 4_1:+41883825 Msa0548160:CDS
AAGTTCAACGTTGGCTTCTA+GGG 0.458277 4_1:-41885507 None:intergenic
TCCAGATTTCGTTTGGGATG+AGG 0.462321 4_1:-41883118 None:intergenic
AAGTGGAAGCAAGCATGCTT+GGG 0.466214 4_1:+41883213 Msa0548160:CDS
TATGTGAAATGGCCTTCATA+TGG 0.467837 4_1:-41885380 None:intergenic
GGATCATATGGGTTCACCAT+GGG 0.473212 4_1:-41883791 None:intergenic
TTCTCGGTCCAATACACATA+TGG 0.474933 4_1:+41884495 Msa0548160:three_prime_UTR
GGAAGCATGGTCAGATTGAC+AGG 0.481984 4_1:+41883941 Msa0548160:three_prime_UTR
AAAATTGAGTGGTTGTGTGT+TGG 0.483321 4_1:-41881212 None:intergenic
TTGATTACTTATGATCTGCC+TGG 0.485276 4_1:+41883079 Msa0548160:CDS
GTGTAAGAGAGTTCATGATT+GGG 0.487800 4_1:+41881441 Msa0548160:CDS
ATAAAGACCCACTTCATGCT+TGG 0.491569 4_1:+41881639 Msa0548160:CDS
TTTGTGCATCGCGTACTACC+TGG 0.493610 4_1:+41885338 Msa0548160:three_prime_UTR
AATTGAGTGGTTGTGTGTTG+GGG 0.497267 4_1:-41881210 None:intergenic
AGTTTGTGTACTGCAGCTCC+AGG 0.498358 4_1:-41885356 None:intergenic
TGCAGAAACGAAAATACAAA+AGG 0.502548 4_1:+41884417 Msa0548160:three_prime_UTR
TGGAAGATACATGGCATACA+AGG 0.504189 4_1:+41882827 Msa0548160:CDS
GCACAAAATCAGTCATTGAC+GGG 0.504891 4_1:-41885322 None:intergenic
CTATGAGGATTTCTGGCAAA+GGG 0.505065 4_1:+41884296 Msa0548160:three_prime_UTR
GTCTTTATCTCTTGGAAAGA+GGG 0.506713 4_1:+41883969 Msa0548160:three_prime_UTR
GGATTTCTGGCAAAGGGATG+TGG 0.507209 4_1:+41884302 Msa0548160:three_prime_UTR
CGAGAGGAAAGGAAAGTATG+AGG 0.512168 4_1:-41882894 None:intergenic
AAAATACTTGCTTCTCAAGT+GGG 0.518790 4_1:-41882767 None:intergenic
TGTCTTTATCTCTTGGAAAG+AGG 0.519291 4_1:+41883968 Msa0548160:three_prime_UTR
GCTTTGCAGGTCTCGAATTG+GGG 0.522101 4_1:+41884372 Msa0548160:three_prime_UTR
AAAGCAGCTTCCTCCACAAA+GGG 0.525187 4_1:-41884354 None:intergenic
TCTTTCCTATGCTGCTCCAT+CGG 0.526421 4_1:-41885683 None:intergenic
TTGTCATCAAAGGATCATAT+GGG 0.529008 4_1:-41883802 None:intergenic
TAGAAGAAACCAAGAAGTCT+AGG 0.529335 4_1:-41883898 None:intergenic
TGTAAGAGAGTTCATGATTG+GGG 0.530248 4_1:+41881442 Msa0548160:CDS
ATGTGAAATGGCCTTCATAT+GGG 0.532028 4_1:-41885379 None:intergenic
ATCAGCGAAGTTTCTTATCA+GGG 0.532446 4_1:+41883920 Msa0548160:three_prime_UTR
TATGCCATGTATCTTCCATC+CGG 0.539640 4_1:-41882822 None:intergenic
ATAATGCGGGTAGCACTAGC+AGG 0.539782 4_1:-41882795 None:intergenic
CATCTCCGATGGAGCAGCAT+AGG 0.540320 4_1:+41885678 Msa0548160:three_prime_UTR
AAGAAATGCTGAGGCTGAGA+GGG 0.556389 4_1:-41885466 None:intergenic
CTGAGGCTGAGAGGGCCTTG+CGG 0.559279 4_1:-41885458 None:intergenic
TTGCTGTTCAAGTTCAACGT+TGG 0.561905 4_1:-41885516 None:intergenic
TGAGTGGTTGTGTGTTGGGG+TGG 0.562558 4_1:-41881207 None:intergenic
TAGTTGAGCTTCATCTCCGA+TGG 0.565207 4_1:+41885667 Msa0548160:three_prime_UTR
TGGATCATTGGTTACTCAAG+TGG 0.565359 4_1:+41883196 Msa0548160:CDS
TGGTGTTAAAGATTCACTGA+TGG 0.566190 4_1:+41883039 Msa0548160:CDS
ACTGAAACTCAGGAGTATAC+GGG 0.566332 4_1:+41884470 Msa0548160:three_prime_UTR
ATCAGTGAATCTTTAACACC+AGG 0.570063 4_1:-41883037 None:intergenic
CAAAGCAGCTTCCTCCACAA+AGG 0.573514 4_1:-41884355 None:intergenic
GATGGAAGATCCAATCTATG+AGG 0.573832 4_1:+41884281 Msa0548160:three_prime_UTR
TGCACAAAATCAGTCATTGA+CGG 0.575384 4_1:-41885323 None:intergenic
ATGACAAACCAAGCATGAAG+TGG 0.579236 4_1:-41881647 None:intergenic
TCCATCCGGAAGCATAATGC+GGG 0.582006 4_1:-41882808 None:intergenic
GTACACAAACTCCCATATGA+AGG 0.587384 4_1:+41885368 Msa0548160:three_prime_UTR
GGATCGCTCTCACCAAAACC+AGG 0.589789 4_1:-41883097 None:intergenic
AGGAAATGCGAAACCCTTTG+TGG 0.591906 4_1:+41884341 Msa0548160:three_prime_UTR
TTGTTCAACAATTTCTCACA+AGG 0.592322 4_1:-41881584 None:intergenic
GAGGCTGAGAGGGCCTTGCG+GGG 0.592778 4_1:-41885456 None:intergenic
ACCCGCATTATGCTTCCGGA+TGG 0.593805 4_1:+41882807 Msa0548160:CDS
TTCCATCCGGAAGCATAATG+CGG 0.604964 4_1:-41882809 None:intergenic
CACAAAATCAGTCATTGACG+GGG 0.606548 4_1:-41885321 None:intergenic
AACCTGCAAGCCGAGAGGAA+AGG 0.606711 4_1:-41882905 None:intergenic
GATCATATGGGTTCACCATG+GGG 0.606822 4_1:-41883790 None:intergenic
GTGGAAGAATCAATTAGGCA+AGG 0.615184 4_1:+41884321 Msa0548160:three_prime_UTR
AGTTTCTTATCAGGGAAGCA+TGG 0.625370 4_1:+41883928 Msa0548160:three_prime_UTR
ACAGGGAATGGATGACAAAG+TGG 0.625940 4_1:+41885295 Msa0548160:intron
TCTATGAGGATTTCTGGCAA+AGG 0.628041 4_1:+41884295 Msa0548160:three_prime_UTR
GCTTCCGGATGGAAGATACA+TGG 0.631513 4_1:+41882818 Msa0548160:CDS
TGACAAACCAAGCATGAAGT+GGG 0.631660 4_1:-41881646 None:intergenic
AGGATCATATGGGTTCACCA+TGG 0.635002 4_1:-41883792 None:intergenic
CAAGAAGTAGTAGCAAGTAG+TGG 0.638951 4_1:+41885536 Msa0548160:three_prime_UTR
TACATGGCATACAAGGAGCA+AGG 0.639291 4_1:+41882834 Msa0548160:CDS
GTGTAGTAAATATCTGTCTG+TGG 0.641522 4_1:-41885424 None:intergenic
AAAGAAATGCTGAGGCTGAG+AGG 0.645314 4_1:-41885467 None:intergenic
CTACTTCTAAAGAAATGCTG+AGG 0.649194 4_1:-41885475 None:intergenic
GATGATATTGGCCAGAACAA+CGG 0.649642 4_1:-41885615 None:intergenic
AAATACTTGCTTCTCAAGTG+GGG 0.651959 4_1:-41882766 None:intergenic
ATCATATGGGTTCACCATGG+GGG 0.655135 4_1:-41883789 None:intergenic
AAATGCGAAACCCTTTGTGG+AGG 0.661010 4_1:+41884344 Msa0548160:three_prime_UTR
TTGTGTGTACTTCTAATCAG+TGG 0.680829 4_1:-41885567 None:intergenic
AGCATGGTCAGATTGACAGG+TGG 0.689331 4_1:+41883944 Msa0548160:three_prime_UTR
CAAACAACCTGCAAGCCGAG+AGG 0.700337 4_1:-41882910 None:intergenic
ACAAAATCAGTCATTGACGG+GGG 0.748115 4_1:-41885320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGATTTTTATTTTAT+GGG - chr4_1:41881270-41881289 None:intergenic 10.0%
!!! AAGTTTTGATTTTTATTTTA+TGG - chr4_1:41881271-41881290 None:intergenic 10.0%
!!! AAATCATTTTTTAAATGAAA+TGG - chr4_1:41885792-41885811 None:intergenic 10.0%
!!! TACTTCATTAAATTTAGTTT+AGG + chr4_1:41883420-41883439 Msa0548160:intron 15.0%
!!! GTAAAATATTTAAAACTCTT+GGG - chr4_1:41884229-41884248 None:intergenic 15.0%
!!! TGTAAAATATTTAAAACTCT+TGG - chr4_1:41884230-41884249 None:intergenic 15.0%
!!! ATATTTTCATATTTGCAATT+TGG - chr4_1:41884606-41884625 None:intergenic 15.0%
!!! ATGAAAATATTAGCTTTTAT+AGG + chr4_1:41884616-41884635 Msa0548160:intron 15.0%
!!! TGAAAATATTAGCTTTTATA+GGG + chr4_1:41884617-41884636 Msa0548160:intron 15.0%
!!! TCTAAAATGAGTTTAAAAAT+TGG - chr4_1:41884743-41884762 None:intergenic 15.0%
!!! AAAAGTATATATATGTGAAA+TGG - chr4_1:41885394-41885413 None:intergenic 15.0%
!!! TTTTTGTTTTGAAAATTGAG+TGG - chr4_1:41881226-41881245 None:intergenic 20.0%
!!! TTGATTTTTATTTTATGGGT+TGG - chr4_1:41881266-41881285 None:intergenic 20.0%
!! TCTTTCATTGTTAAGAAATT+TGG + chr4_1:41881536-41881555 Msa0548160:CDS 20.0%
!! TTAAGAAATTTGGAAAGATT+GGG + chr4_1:41881546-41881565 Msa0548160:CDS 20.0%
!!! TTTACTTTTTTTTGAAGTTG+TGG + chr4_1:41881767-41881786 Msa0548160:intron 20.0%
!!! TATGTATGGTTTTAAATTGT+GGG + chr4_1:41881865-41881884 Msa0548160:intron 20.0%
!! TAATTTATTACTATGAATGC+AGG + chr4_1:41882437-41882456 Msa0548160:intron 20.0%
!!! ATTTCTTGTATTGTGTTTTT+AGG + chr4_1:41882628-41882647 Msa0548160:intron 20.0%
!!! ACTTTTAACTTGACAAAATT+TGG + chr4_1:41883328-41883347 Msa0548160:intron 20.0%
!!! TCTATTTCTCAATTTATTAC+CGG + chr4_1:41883633-41883652 Msa0548160:intron 20.0%
!! TTGTAAAAAAGTAACTATCA+AGG - chr4_1:41884718-41884737 None:intergenic 20.0%
!!! AAATTCTTTTAAGTTCTCAT+AGG + chr4_1:41884836-41884855 Msa0548160:intron 20.0%
!! AGTTAAATCAATAAACAAGA+CGG + chr4_1:41885132-41885151 Msa0548160:intron 20.0%
!!! CATATAATTTGTGATGATAT+TGG - chr4_1:41885630-41885649 None:intergenic 20.0%
! CTAACTGTAGAATTCTTAAA+AGG + chr4_1:41881473-41881492 Msa0548160:CDS 25.0%
! GTTAAGAAATTTGGAAAGAT+TGG + chr4_1:41881545-41881564 Msa0548160:CDS 25.0%
! ACAACCAAAAAAAGAAACAT+GGG - chr4_1:41881716-41881735 None:intergenic 25.0%
! AACAACCAAAAAAAGAAACA+TGG - chr4_1:41881717-41881736 None:intergenic 25.0%
!! AATTTGCATTTCTTGATGAT+GGG + chr4_1:41881818-41881837 Msa0548160:intron 25.0%
!!! GTATGTATGGTTTTAAATTG+TGG + chr4_1:41881864-41881883 Msa0548160:intron 25.0%
! ATCTTGATATTGTCACAAAA+TGG + chr4_1:41881904-41881923 Msa0548160:intron 25.0%
! TCTTGATATTGTCACAAAAT+GGG + chr4_1:41881905-41881924 Msa0548160:intron 25.0%
!! TAGTTTAGAACTAAGAATGT+AGG + chr4_1:41881943-41881962 Msa0548160:intron 25.0%
! ATATTATAGTTAAACCCACT+TGG + chr4_1:41882089-41882108 Msa0548160:intron 25.0%
!!! CTGCAATATAAATTTTTTGG+AGG - chr4_1:41882395-41882414 None:intergenic 25.0%
!!! TGGCTGCAATATAAATTTTT+TGG - chr4_1:41882398-41882417 None:intergenic 25.0%
! GCATAAAACATTGAGAATTA+GGG - chr4_1:41882593-41882612 None:intergenic 25.0%
! AGCATAAAACATTGAGAATT+AGG - chr4_1:41882594-41882613 None:intergenic 25.0%
!! TAATTCTCAATGTTTTATGC+TGG + chr4_1:41882593-41882612 Msa0548160:intron 25.0%
!! TTGAATTTGCGTTTGAAATT+AGG + chr4_1:41883010-41883029 Msa0548160:intron 25.0%
!! CATGATAGTTGTTATTCAAA+AGG - chr4_1:41883384-41883403 None:intergenic 25.0%
! AAATCTGTGTTTACAAAAGT+TGG + chr4_1:41884184-41884203 Msa0548160:intron 25.0%
! TTTCTTGACTACAAATAATC+TGG + chr4_1:41885058-41885077 Msa0548160:intron 25.0%
! TACATACAAACAAACATAGA+GGG - chr4_1:41885214-41885233 None:intergenic 25.0%
! ATACATACAAACAAACATAG+AGG - chr4_1:41885215-41885234 None:intergenic 25.0%
!! TCTAATTCAATTTGCTTTCT+GGG + chr4_1:41885237-41885256 Msa0548160:intron 25.0%
!! CAGATATTTACTACACTTTT+TGG + chr4_1:41885431-41885450 Msa0548160:three_prime_UTR 25.0%
TTGTTCAACAATTTCTCACA+AGG - chr4_1:41881587-41881606 None:intergenic 30.0%
!!! ATCACCCATGTTTCTTTTTT+TGG + chr4_1:41881709-41881728 Msa0548160:intron 30.0%
CAATTTGCATTTCTTGATGA+TGG + chr4_1:41881817-41881836 Msa0548160:intron 30.0%
!!! TTGATGATGGGTTTTTGTTT+AGG + chr4_1:41881830-41881849 Msa0548160:intron 30.0%
!! ATGGGTTTTTGTTTAGGAAT+AGG + chr4_1:41881836-41881855 Msa0548160:intron 30.0%
GGAATAGGTTAATGTATGTA+TGG + chr4_1:41881851-41881870 Msa0548160:intron 30.0%
CTTGATATTGTCACAAAATG+GGG + chr4_1:41881906-41881925 Msa0548160:intron 30.0%
TATTAGGAATAGGTCAATGT+AGG + chr4_1:41882269-41882288 Msa0548160:intron 30.0%
!!! TGAATGCAGGTTTTAAATTG+AGG + chr4_1:41882450-41882469 Msa0548160:intron 30.0%
TTGTTGAGACATTATGAGTA+GGG + chr4_1:41882534-41882553 Msa0548160:intron 30.0%
AGAATTAGGGTTTCAGAAAA+TGG - chr4_1:41882580-41882599 None:intergenic 30.0%
!!! TCTTGTATTGTGTTTTTAGG+TGG + chr4_1:41882631-41882650 Msa0548160:intron 30.0%
AAAATACTTGCTTCTCAAGT+GGG - chr4_1:41882770-41882789 None:intergenic 30.0%
AAAAATACTTGCTTCTCAAG+TGG - chr4_1:41882771-41882790 None:intergenic 30.0%
! ACTTGTTTAGAGTGAGTTAA+CGG + chr4_1:41883480-41883499 Msa0548160:intron 30.0%
!! ATGAAGCACTGAAATATACA+CGG - chr4_1:41883693-41883712 None:intergenic 30.0%
GATGTTGTGTATTAACTTTC+AGG + chr4_1:41883752-41883771 Msa0548160:intron 30.0%
TTGTCATCAAAGGATCATAT+GGG - chr4_1:41883805-41883824 None:intergenic 30.0%
TTTGTCATCAAAGGATCATA+TGG - chr4_1:41883806-41883825 None:intergenic 30.0%
GACAAAAAAAGAGATAAGCA+AGG - chr4_1:41884003-41884022 None:intergenic 30.0%
TTAGTCAACATGTCCATATA+TGG + chr4_1:41884025-41884044 Msa0548160:intron 30.0%
ATGTACATAGATAGAAATGC+AGG - chr4_1:41884061-41884080 None:intergenic 30.0%
TGGATGCTGATAAGAATTTA+TGG + chr4_1:41884110-41884129 Msa0548160:intron 30.0%
TGCAGAAACGAAAATACAAA+AGG + chr4_1:41884417-41884436 Msa0548160:three_prime_UTR 30.0%
ACAAAAGGAATGTGCTTAAT+TGG + chr4_1:41884432-41884451 Msa0548160:three_prime_UTR 30.0%
TAAGAAGAGAGAAATATGAC+AGG - chr4_1:41884766-41884785 None:intergenic 30.0%
TTTAACCGTCCAATCTTAAT+AGG - chr4_1:41884945-41884964 None:intergenic 30.0%
TTTACCAAGCTTAAATCAGA+CGG + chr4_1:41885004-41885023 Msa0548160:intron 30.0%
! CTCTAATTCAATTTGCTTTC+TGG + chr4_1:41885236-41885255 Msa0548160:intron 30.0%
TAGTCTGATATGACAACAAT+TGG + chr4_1:41885746-41885765 Msa0548160:three_prime_UTR 30.0%
! TGGGGTGGAAATTTGAAATA+GGG - chr4_1:41881195-41881214 None:intergenic 35.0%
! TTGGGGTGGAAATTTGAAAT+AGG - chr4_1:41881196-41881215 None:intergenic 35.0%
AAATTGAGTGGTTGTGTGTT+GGG - chr4_1:41881214-41881233 None:intergenic 35.0%
AAAATTGAGTGGTTGTGTGT+TGG - chr4_1:41881215-41881234 None:intergenic 35.0%
TGTGTAAGAGAGTTCATGAT+TGG + chr4_1:41881440-41881459 Msa0548160:CDS 35.0%
GTGTAAGAGAGTTCATGATT+GGG + chr4_1:41881441-41881460 Msa0548160:CDS 35.0%
TGTAAGAGAGTTCATGATTG+GGG + chr4_1:41881442-41881461 Msa0548160:CDS 35.0%
GTTTCTTTACTTGCTTTCTC+AGG + chr4_1:41881677-41881696 Msa0548160:CDS 35.0%
! GTGGCATTGAAGTTAAACAT+GGG - chr4_1:41881995-41882014 None:intergenic 35.0%
! TGTGGCATTGAAGTTAAACA+TGG - chr4_1:41881996-41882015 None:intergenic 35.0%
!!! ATGCCACATGTTTCCTTTTT+TGG + chr4_1:41882008-41882027 Msa0548160:intron 35.0%
!!! TGCCACATGTTTCCTTTTTT+GGG + chr4_1:41882009-41882028 Msa0548160:intron 35.0%
ATTCATAAACCCCCCAAAAA+AGG - chr4_1:41882024-41882043 None:intergenic 35.0%
ATAGTTAAACCCACTTGGAT+TGG + chr4_1:41882094-41882113 Msa0548160:intron 35.0%
AATACAATCCCTCAAAACCA+GGG - chr4_1:41882253-41882272 None:intergenic 35.0%
TAATACAATCCCTCAAAACC+AGG - chr4_1:41882254-41882273 None:intergenic 35.0%
!!! TGGTTTTGAGGGATTGTATT+AGG + chr4_1:41882253-41882272 Msa0548160:intron 35.0%
TGAGGGATTGTATTAGGAAT+AGG + chr4_1:41882259-41882278 Msa0548160:intron 35.0%
CTGCAAATTAGAGCAAAATG+TGG + chr4_1:41882327-41882346 Msa0548160:intron 35.0%
GAGCAAAATGTGGATAAATG+AGG + chr4_1:41882337-41882356 Msa0548160:intron 35.0%
GTTGTTGAGACATTATGAGT+AGG + chr4_1:41882533-41882552 Msa0548160:intron 35.0%
AATACCTGGTTGACATGATT+TGG + chr4_1:41882695-41882714 Msa0548160:intron 35.0%
AAATACTTGCTTCTCAAGTG+GGG - chr4_1:41882769-41882788 None:intergenic 35.0%
TCAACAATGCCTCAAACTAA+GGG - chr4_1:41882979-41882998 None:intergenic 35.0%
TTCAACAATGCCTCAAACTA+AGG - chr4_1:41882980-41882999 None:intergenic 35.0%
! CGTTTGAAATTAGGAATTCC+TGG + chr4_1:41883019-41883038 Msa0548160:intron 35.0%
ATCAGTGAATCTTTAACACC+AGG - chr4_1:41883040-41883059 None:intergenic 35.0%
! TGGTGTTAAAGATTCACTGA+TGG + chr4_1:41883039-41883058 Msa0548160:CDS 35.0%
TTGATTACTTATGATCTGCC+TGG + chr4_1:41883079-41883098 Msa0548160:CDS 35.0%
!!! GTTGACAAGTTTTGGATCAT+TGG + chr4_1:41883184-41883203 Msa0548160:CDS 35.0%
TTAATACCTGCAAGTCTATC+AGG - chr4_1:41883256-41883275 None:intergenic 35.0%
TTGTGTCACATCAATAGAAC+AGG + chr4_1:41883534-41883553 Msa0548160:intron 35.0%
CAGATCACTTATATGCTGTT+TGG - chr4_1:41883729-41883748 None:intergenic 35.0%
TAGAAGAAACCAAGAAGTCT+AGG - chr4_1:41883901-41883920 None:intergenic 35.0%
TATCAGCGAAGTTTCTTATC+AGG + chr4_1:41883919-41883938 Msa0548160:three_prime_UTR 35.0%
ATCAGCGAAGTTTCTTATCA+GGG + chr4_1:41883920-41883939 Msa0548160:three_prime_UTR 35.0%
TGTCTTTATCTCTTGGAAAG+AGG + chr4_1:41883968-41883987 Msa0548160:three_prime_UTR 35.0%
GTCTTTATCTCTTGGAAAGA+GGG + chr4_1:41883969-41883988 Msa0548160:three_prime_UTR 35.0%
AGGATGGTATAAGCCATATA+TGG - chr4_1:41884041-41884060 None:intergenic 35.0%
ACATAGATAGAAATGCAGGA+TGG - chr4_1:41884057-41884076 None:intergenic 35.0%
TATCAGCATCCATCTAACTA+GGG - chr4_1:41884102-41884121 None:intergenic 35.0%
TTATCAGCATCCATCTAACT+AGG - chr4_1:41884103-41884122 None:intergenic 35.0%
AATTACAGAACCCAACTCAA+TGG + chr4_1:41884138-41884157 Msa0548160:intron 35.0%
ATTAGCTGAACCATTGAGTT+GGG - chr4_1:41884151-41884170 None:intergenic 35.0%
AATTAGCTGAACCATTGAGT+TGG - chr4_1:41884152-41884171 None:intergenic 35.0%
! TTTACAAAAGTTGGTTCCGA+GGG + chr4_1:41884193-41884212 Msa0548160:intron 35.0%
ATCCAATCTATGAGGATTTC+TGG + chr4_1:41884289-41884308 Msa0548160:three_prime_UTR 35.0%
! ATTTTCGTTTCTGCAACTTG+AGG - chr4_1:41884412-41884431 None:intergenic 35.0%
! GAATGTGCTTAATTGGCTTA+AGG + chr4_1:41884439-41884458 Msa0548160:three_prime_UTR 35.0%
GTTATGAAAATGCATGCAGA+AGG - chr4_1:41884546-41884565 None:intergenic 35.0%
! AAAGAATTTTACACCGCTGA+GGG - chr4_1:41884825-41884844 None:intergenic 35.0%
! AAAAGAATTTTACACCGCTG+AGG - chr4_1:41884826-41884845 None:intergenic 35.0%
ACAGTCCTATTAAGATTGGA+CGG + chr4_1:41884937-41884956 Msa0548160:intron 35.0%
ATTGCAGTACAATTGTTGAC+AGG + chr4_1:41885277-41885296 Msa0548160:intron 35.0%
TTGCAGTACAATTGTTGACA+GGG + chr4_1:41885278-41885297 Msa0548160:intron 35.0%
TGCACAAAATCAGTCATTGA+CGG - chr4_1:41885326-41885345 None:intergenic 35.0%
ATGTGAAATGGCCTTCATAT+GGG - chr4_1:41885382-41885401 None:intergenic 35.0%
TATGTGAAATGGCCTTCATA+TGG - chr4_1:41885383-41885402 None:intergenic 35.0%
GTGTAGTAAATATCTGTCTG+TGG - chr4_1:41885427-41885446 None:intergenic 35.0%
! CTACTTCTAAAGAAATGCTG+AGG - chr4_1:41885478-41885497 None:intergenic 35.0%
TTGTGTGTACTTCTAATCAG+TGG - chr4_1:41885570-41885589 None:intergenic 35.0%
!! ATTTGTTTTTCCCGTTGTTC+TGG + chr4_1:41885604-41885623 Msa0548160:three_prime_UTR 35.0%
AGTTCAATAGCCCAAAAACA+GGG - chr4_1:41885727-41885746 None:intergenic 35.0%
TAGTTCAATAGCCCAAAAAC+AGG - chr4_1:41885728-41885747 None:intergenic 35.0%
AATTGAGTGGTTGTGTGTTG+GGG - chr4_1:41881213-41881232 None:intergenic 40.0%
TGAAGTGGGTCTTTATCTTC+AGG - chr4_1:41881635-41881654 None:intergenic 40.0%
ATAAAGACCCACTTCATGCT+TGG + chr4_1:41881639-41881658 Msa0548160:CDS 40.0%
TGACAAACCAAGCATGAAGT+GGG - chr4_1:41881649-41881668 None:intergenic 40.0%
ATGACAAACCAAGCATGAAG+TGG - chr4_1:41881650-41881669 None:intergenic 40.0%
!!! GCCACATGTTTCCTTTTTTG+GGG + chr4_1:41882010-41882029 Msa0548160:intron 40.0%
!!! CCACATGTTTCCTTTTTTGG+GGG + chr4_1:41882011-41882030 Msa0548160:intron 40.0%
!!! CACATGTTTCCTTTTTTGGG+GGG + chr4_1:41882012-41882031 Msa0548160:intron 40.0%
GATTATCCCCATGCCAAATT+CGG + chr4_1:41882172-41882191 Msa0548160:intron 40.0%
TGAATTCAATTGACCTTCCC+TGG + chr4_1:41882233-41882252 Msa0548160:intron 40.0%
!! GTAGGCATGGTTCTAAATTG+CGG + chr4_1:41882287-41882306 Msa0548160:intron 40.0%
CGGCATCACAACTACAATTT+GGG - chr4_1:41882363-41882382 None:intergenic 40.0%
TCGGCATCACAACTACAATT+TGG - chr4_1:41882364-41882383 None:intergenic 40.0%
AAATTGTAGTTGTGATGCCG+AGG + chr4_1:41882363-41882382 Msa0548160:intron 40.0%
!!! TTTTTTGGAGGTCTTCACCT+CGG - chr4_1:41882383-41882402 None:intergenic 40.0%
ACAGTCTACAACTGCAATTG+TGG - chr4_1:41882418-41882437 None:intergenic 40.0%
TCAACCACTAAAGTCAGACA+GGG - chr4_1:41882486-41882505 None:intergenic 40.0%
ATCAACCACTAAAGTCAGAC+AGG - chr4_1:41882487-41882506 None:intergenic 40.0%
CCACAATGTGAATGCAATTG+AGG - chr4_1:41882514-41882533 None:intergenic 40.0%
CCTCAATTGCATTCACATTG+TGG + chr4_1:41882511-41882530 Msa0548160:intron 40.0%
TGAGACATTATGAGTAGGGT+CGG + chr4_1:41882538-41882557 Msa0548160:intron 40.0%
TCAACCAAATCATGTCAACC+AGG - chr4_1:41882702-41882721 None:intergenic 40.0%
TATGCCATGTATCTTCCATC+CGG - chr4_1:41882825-41882844 None:intergenic 40.0%
TGGAAGATACATGGCATACA+AGG + chr4_1:41882827-41882846 Msa0548160:CDS 40.0%
! ATACAAGGAGCAAGGTGTTT+CGG + chr4_1:41882842-41882861 Msa0548160:CDS 40.0%
CTCATACTTTCCTTTCCTCT+CGG + chr4_1:41882895-41882914 Msa0548160:CDS 40.0%
! TTGTTTCCACCCTTAGTTTG+AGG + chr4_1:41882967-41882986 Msa0548160:intron 40.0%
GATTCACTGATGGAAGAGTT+TGG + chr4_1:41883049-41883068 Msa0548160:CDS 40.0%
! ACTTATGATCTGCCTGGTTT+TGG + chr4_1:41883085-41883104 Msa0548160:CDS 40.0%
GACGATTCCAGATTTCGTTT+GGG - chr4_1:41883127-41883146 None:intergenic 40.0%
TGACGATTCCAGATTTCGTT+TGG - chr4_1:41883128-41883147 None:intergenic 40.0%
!!! TCGTTTTTAGCTGATGCTCT+TGG + chr4_1:41883160-41883179 Msa0548160:CDS 40.0%
!!! CTCTTGGTGTTGACAAGTTT+TGG + chr4_1:41883176-41883195 Msa0548160:CDS 40.0%
! TGGATCATTGGTTACTCAAG+TGG + chr4_1:41883196-41883215 Msa0548160:CDS 40.0%
TACATACCTGATAGACTTGC+AGG + chr4_1:41883247-41883266 Msa0548160:CDS 40.0%
TCAGTGAGAATAAGTGTGTC+TGG + chr4_1:41883562-41883581 Msa0548160:intron 40.0%
CTCTCTTCGTTTGTCATCAA+AGG - chr4_1:41883815-41883834 None:intergenic 40.0%
AGTTTCTTATCAGGGAAGCA+TGG + chr4_1:41883928-41883947 Msa0548160:three_prime_UTR 40.0%
TATCTCTTGGAAAGAGGGTA+AGG + chr4_1:41883974-41883993 Msa0548160:intron 40.0%
TCGTGTTAACCCTAGTTAGA+TGG + chr4_1:41884090-41884109 Msa0548160:intron 40.0%
! GTTTACAAAAGTTGGTTCCG+AGG + chr4_1:41884192-41884211 Msa0548160:intron 40.0%
! CAGATCTCATTGCCTTTTTC+AGG + chr4_1:41884248-41884267 Msa0548160:intron 40.0%
TCAGTGCTTTGTCCTGAAAA+AGG - chr4_1:41884263-41884282 None:intergenic 40.0%
!!! TTTTCAGGACAAAGCACTGA+TGG + chr4_1:41884263-41884282 Msa0548160:intron 40.0%
GATGGAAGATCCAATCTATG+AGG + chr4_1:41884281-41884300 Msa0548160:three_prime_UTR 40.0%
TGCCAGAAATCCTCATAGAT+TGG - chr4_1:41884294-41884313 None:intergenic 40.0%
!! TCTATGAGGATTTCTGGCAA+AGG + chr4_1:41884295-41884314 Msa0548160:three_prime_UTR 40.0%
!! CTATGAGGATTTCTGGCAAA+GGG + chr4_1:41884296-41884315 Msa0548160:three_prime_UTR 40.0%
GGGATGTGGAAGAATCAATT+AGG + chr4_1:41884316-41884335 Msa0548160:three_prime_UTR 40.0%
GTGGAAGAATCAATTAGGCA+AGG + chr4_1:41884321-41884340 Msa0548160:three_prime_UTR 40.0%
! CACTGAAACTCAGGAGTATA+CGG + chr4_1:41884469-41884488 Msa0548160:three_prime_UTR 40.0%
! ACTGAAACTCAGGAGTATAC+GGG + chr4_1:41884470-41884489 Msa0548160:three_prime_UTR 40.0%
TTCTCGGTCCAATACACATA+TGG + chr4_1:41884495-41884514 Msa0548160:three_prime_UTR 40.0%
CTCACTTGCCATATGTGTAT+TGG - chr4_1:41884506-41884525 None:intergenic 40.0%
! GATGGTAATGAGCGGATTTA+TGG - chr4_1:41884791-41884810 None:intergenic 40.0%
! AGAAGCATACAGCTCAATTG+AGG + chr4_1:41884861-41884880 Msa0548160:intron 40.0%
CAATCTTAATAGGACTGTCC+AGG - chr4_1:41884935-41884954 None:intergenic 40.0%
CTGGACAGTCCTATTAAGAT+TGG + chr4_1:41884933-41884952 Msa0548160:intron 40.0%
TAAATCAGACGGTCTGCATT+TGG + chr4_1:41885015-41885034 Msa0548160:intron 40.0%
GTACAATTGTTGACAGGGAA+TGG + chr4_1:41885283-41885302 Msa0548160:intron 40.0%
ACAAAATCAGTCATTGACGG+GGG - chr4_1:41885323-41885342 None:intergenic 40.0%
CACAAAATCAGTCATTGACG+GGG - chr4_1:41885324-41885343 None:intergenic 40.0%
GCACAAAATCAGTCATTGAC+GGG - chr4_1:41885325-41885344 None:intergenic 40.0%
GTACACAAACTCCCATATGA+AGG + chr4_1:41885368-41885387 Msa0548160:three_prime_UTR 40.0%
!! AAGTTCAACGTTGGCTTCTA+GGG - chr4_1:41885510-41885529 None:intergenic 40.0%
! TTGCTGTTCAAGTTCAACGT+TGG - chr4_1:41885519-41885538 None:intergenic 40.0%
CAAGAAGTAGTAGCAAGTAG+TGG + chr4_1:41885536-41885555 Msa0548160:three_prime_UTR 40.0%
ATGATATTGGCCAGAACAAC+GGG - chr4_1:41885617-41885636 None:intergenic 40.0%
GATGATATTGGCCAGAACAA+CGG - chr4_1:41885618-41885637 None:intergenic 40.0%
CCCCCAAAAAAGGAAACATG+TGG - chr4_1:41882014-41882033 None:intergenic 45.0%
!! TAAACCCACTTGGATTGGTC+CGG + chr4_1:41882099-41882118 Msa0548160:intron 45.0%
!!! ATTGACCTTCCCTGGTTTTG+AGG + chr4_1:41882241-41882260 Msa0548160:intron 45.0%
!!! TTGACCTTCCCTGGTTTTGA+GGG + chr4_1:41882242-41882261 Msa0548160:intron 45.0%
GGAATAGGTCAATGTAGGCA+TGG + chr4_1:41882274-41882293 Msa0548160:intron 45.0%
!! ATGGTTCTAAATTGCGGCTG+TGG + chr4_1:41882293-41882312 Msa0548160:intron 45.0%
CAACCACTAAAGTCAGACAG+GGG - chr4_1:41882485-41882504 None:intergenic 45.0%
ATTATGAGTAGGGTCGGTCT+AGG + chr4_1:41882544-41882563 Msa0548160:intron 45.0%
! TAGCTAGTCTGCTCAATACC+TGG + chr4_1:41882681-41882700 Msa0548160:intron 45.0%
! TTCCATCCGGAAGCATAATG+CGG - chr4_1:41882812-41882831 None:intergenic 45.0%
TACATGGCATACAAGGAGCA+AGG + chr4_1:41882834-41882853 Msa0548160:CDS 45.0%
! CGAGAGGAAAGGAAAGTATG+AGG - chr4_1:41882897-41882916 None:intergenic 45.0%
ACAATGCCTCAAACTAAGGG+TGG - chr4_1:41882976-41882995 None:intergenic 45.0%
TCCTCATCCCAAACGAAATC+TGG + chr4_1:41883117-41883136 Msa0548160:CDS 45.0%
! TCCAGATTTCGTTTGGGATG+AGG - chr4_1:41883121-41883140 None:intergenic 45.0%
AAGTGGAAGCAAGCATGCTT+GGG + chr4_1:41883213-41883232 Msa0548160:CDS 45.0%
ATCATATGGGTTCACCATGG+GGG - chr4_1:41883792-41883811 None:intergenic 45.0%
GATCATATGGGTTCACCATG+GGG - chr4_1:41883793-41883812 None:intergenic 45.0%
GGATCATATGGGTTCACCAT+GGG - chr4_1:41883794-41883813 None:intergenic 45.0%
AGGATCATATGGGTTCACCA+TGG - chr4_1:41883795-41883814 None:intergenic 45.0%
GACGAAGAACCTGGAACAAA+TGG + chr4_1:41883834-41883853 Msa0548160:CDS 45.0%
! TTTTCGCGTCCATTTGTTCC+AGG - chr4_1:41883846-41883865 None:intergenic 45.0%
CGAAGCTTTCCTAGACTTCT+TGG + chr4_1:41883889-41883908 Msa0548160:three_prime_UTR 45.0%
AGGTGGCTGTCTTTATCTCT+TGG + chr4_1:41883961-41883980 Msa0548160:three_prime_UTR 45.0%
AGGAAATGCGAAACCCTTTG+TGG + chr4_1:41884341-41884360 Msa0548160:three_prime_UTR 45.0%
AAATGCGAAACCCTTTGTGG+AGG + chr4_1:41884344-41884363 Msa0548160:three_prime_UTR 45.0%
AAAGCAGCTTCCTCCACAAA+GGG - chr4_1:41884357-41884376 None:intergenic 45.0%
TGCTTTGCAGGTCTCGAATT+GGG + chr4_1:41884371-41884390 Msa0548160:three_prime_UTR 45.0%
! GGCAGTTTTCACTGAAACTC+AGG + chr4_1:41884460-41884479 Msa0548160:three_prime_UTR 45.0%
! CAGGAGTATACGGGATTTCT+CGG + chr4_1:41884479-41884498 Msa0548160:three_prime_UTR 45.0%
! ATTTTACACCGCTGAGGGAA+GGG - chr4_1:41884820-41884839 None:intergenic 45.0%
! AATTTTACACCGCTGAGGGA+AGG - chr4_1:41884821-41884840 None:intergenic 45.0%
ATCTCGATTCTCTGCTGTCA+GGG + chr4_1:41884884-41884903 Msa0548160:intron 45.0%
CAGACCGTCTGATTTAAGCT+TGG - chr4_1:41885011-41885030 None:intergenic 45.0%
ACAGGGAATGGATGACAAAG+TGG + chr4_1:41885295-41885314 Msa0548160:intron 45.0%
AAGAAATGCTGAGGCTGAGA+GGG - chr4_1:41885469-41885488 None:intergenic 45.0%
AAAGAAATGCTGAGGCTGAG+AGG - chr4_1:41885470-41885489 None:intergenic 45.0%
!! ACGTTGGCTTCTAGGGTAAT+TGG - chr4_1:41885503-41885522 None:intergenic 45.0%
!! CAAGTTCAACGTTGGCTTCT+AGG - chr4_1:41885511-41885530 None:intergenic 45.0%
TAGTTGAGCTTCATCTCCGA+TGG + chr4_1:41885667-41885686 Msa0548160:three_prime_UTR 45.0%
TCTTTCCTATGCTGCTCCAT+CGG - chr4_1:41885686-41885705 None:intergenic 45.0%
!! AGTGTTTCCGCCCTGTTTTT+GGG + chr4_1:41885714-41885733 Msa0548160:three_prime_UTR 45.0%
TCAATAGCCCAAAAACAGGG+CGG - chr4_1:41885724-41885743 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTAAGTTA+TGG + chr4_1:41882055-41882074 Msa0548160:intron 5.0%
AGGTCAAAAGCCAACACCAC+CGG - chr4_1:41882121-41882140 None:intergenic 50.0%
!!! GTGGTGTTGGCTTTTGACCT+TGG + chr4_1:41882121-41882140 Msa0548160:intron 50.0%
! CTTGAGAAGAGCACACTCCA+AGG - chr4_1:41882141-41882160 None:intergenic 50.0%
CTTGGAGTGTGCTCTTCTCA+AGG + chr4_1:41882139-41882158 Msa0548160:intron 50.0%
GTGTGCTCTTCTCAAGGTCT+CGG + chr4_1:41882145-41882164 Msa0548160:intron 50.0%
TGTGCTCTTCTCAAGGTCTC+GGG + chr4_1:41882146-41882165 Msa0548160:intron 50.0%
TATCCCCATGCCAAATTCGG+TGG + chr4_1:41882175-41882194 Msa0548160:intron 50.0%
ATCCCCATGCCAAATTCGGT+GGG + chr4_1:41882176-41882195 Msa0548160:intron 50.0%
TAGCCCACCGAATTTGGCAT+GGG - chr4_1:41882182-41882201 None:intergenic 50.0%
CCAAACTAGCCCACCGAATT+TGG - chr4_1:41882188-41882207 None:intergenic 50.0%
!! CCAAATTCGGTGGGCTAGTT+TGG + chr4_1:41882185-41882204 Msa0548160:intron 50.0%
CAATCCCTCAAAACCAGGGA+AGG - chr4_1:41882249-41882268 None:intergenic 50.0%
ATAATGCGGGTAGCACTAGC+AGG - chr4_1:41882798-41882817 None:intergenic 50.0%
TGCTACCCGCATTATGCTTC+CGG + chr4_1:41882803-41882822 Msa0548160:CDS 50.0%
! TCCATCCGGAAGCATAATGC+GGG - chr4_1:41882811-41882830 None:intergenic 50.0%
GCTTCCGGATGGAAGATACA+TGG + chr4_1:41882818-41882837 Msa0548160:CDS 50.0%
CAAGTGGAAGCAAGCATGCT+TGG + chr4_1:41883212-41883231 Msa0548160:CDS 50.0%
TGACACTGACACGTAGAGAC+CGG - chr4_1:41883655-41883674 None:intergenic 50.0%
TGTCAGTGTCATGTCGTGTC+TGG + chr4_1:41883664-41883683 Msa0548160:intron 50.0%
ACGAAGAGAGACGAAGAACC+TGG + chr4_1:41883825-41883844 Msa0548160:CDS 50.0%
! GGAAGCATGGTCAGATTGAC+AGG + chr4_1:41883941-41883960 Msa0548160:three_prime_UTR 50.0%
AGCATGGTCAGATTGACAGG+TGG + chr4_1:41883944-41883963 Msa0548160:three_prime_UTR 50.0%
! AAAGTTGGTTCCGAGGGCAT+AGG + chr4_1:41884199-41884218 Msa0548160:intron 50.0%
!! GGATTTCTGGCAAAGGGATG+TGG + chr4_1:41884302-41884321 Msa0548160:three_prime_UTR 50.0%
CAAAGCAGCTTCCTCCACAA+AGG - chr4_1:41884358-41884377 None:intergenic 50.0%
CTGCTTTGCAGGTCTCGAAT+TGG + chr4_1:41884370-41884389 Msa0548160:three_prime_UTR 50.0%
GCTTTGCAGGTCTCGAATTG+GGG + chr4_1:41884372-41884391 Msa0548160:three_prime_UTR 50.0%
! GGGAAGGAGATGGTAATGAG+CGG - chr4_1:41884799-41884818 None:intergenic 50.0%
! TTTTACACCGCTGAGGGAAG+GGG - chr4_1:41884819-41884838 None:intergenic 50.0%
GATCTCGATTCTCTGCTGTC+AGG + chr4_1:41884883-41884902 Msa0548160:intron 50.0%
TCATGTGCGTGAGCGATAGA+GGG - chr4_1:41885086-41885105 None:intergenic 50.0%
TTCATGTGCGTGAGCGATAG+AGG - chr4_1:41885087-41885106 None:intergenic 50.0%
TTTGTGCATCGCGTACTACC+TGG + chr4_1:41885338-41885357 Msa0548160:three_prime_UTR 50.0%
AGTTTGTGTACTGCAGCTCC+AGG - chr4_1:41885359-41885378 None:intergenic 50.0%
!!! ACACTTTTTGGAACCCCGCA+AGG + chr4_1:41885443-41885462 Msa0548160:three_prime_UTR 50.0%
! CAGTGTTTCCGCCCTGTTTT+TGG + chr4_1:41885713-41885732 Msa0548160:three_prime_UTR 50.0%
TGAGTGGTTGTGTGTTGGGG+TGG - chr4_1:41881210-41881229 None:intergenic 55.0%
ACCACCGGACCAATCCAAGT+GGG - chr4_1:41882106-41882125 None:intergenic 55.0%
!! TTGGATTGGTCCGGTGGTGT+TGG + chr4_1:41882108-41882127 Msa0548160:intron 55.0%
AGCCCACCGAATTTGGCATG+GGG - chr4_1:41882181-41882200 None:intergenic 55.0%
CTAGCCCACCGAATTTGGCA+TGG - chr4_1:41882183-41882202 None:intergenic 55.0%
CACTAAAGTCAGACAGGGGC+AGG - chr4_1:41882481-41882500 None:intergenic 55.0%
CTGCCCCTGTCTGACTTTAG+TGG + chr4_1:41882479-41882498 Msa0548160:intron 55.0%
ACCCGCATTATGCTTCCGGA+TGG + chr4_1:41882807-41882826 Msa0548160:CDS 55.0%
! TTCCTTTCCTCTCGGCTTGC+AGG + chr4_1:41882903-41882922 Msa0548160:CDS 55.0%
AACCTGCAAGCCGAGAGGAA+AGG - chr4_1:41882908-41882927 None:intergenic 55.0%
CAAACAACCTGCAAGCCGAG+AGG - chr4_1:41882913-41882932 None:intergenic 55.0%
GGATCGCTCTCACCAAAACC+AGG - chr4_1:41883100-41883119 None:intergenic 55.0%
GTTCACCATGGGGGCAAACA+TGG - chr4_1:41883783-41883802 None:intergenic 55.0%
CTTGGGATAGCCTATGCCCT+CGG - chr4_1:41884212-41884231 None:intergenic 55.0%
! TGTGGAGGAAGCTGCTTTGC+AGG + chr4_1:41884359-41884378 Msa0548160:three_prime_UTR 55.0%
! GCTTGCTAACGGCATGACCA+GGG - chr4_1:41884913-41884932 None:intergenic 55.0%
!! GGACTGTCCAGGCTTGCTAA+CGG - chr4_1:41884924-41884943 None:intergenic 55.0%
CATCTCCGATGGAGCAGCAT+AGG + chr4_1:41885678-41885697 Msa0548160:three_prime_UTR 55.0%
!! ACCCACTTGGATTGGTCCGG+TGG + chr4_1:41882102-41882121 Msa0548160:intron 60.0%
CACCACCGGACCAATCCAAG+TGG - chr4_1:41882107-41882126 None:intergenic 60.0%
TGCTGCCATGTTTGCCCCCA+TGG + chr4_1:41883775-41883794 Msa0548160:CDS 60.0%
CTGAGGGAAGGGGAAGGAGA+TGG - chr4_1:41884809-41884828 None:intergenic 60.0%
TCTCCTTCCCCTTCCCTCAG+CGG + chr4_1:41884809-41884828 Msa0548160:intron 60.0%
CTCTGCTGTCAGGGAATCCC+TGG + chr4_1:41884893-41884912 Msa0548160:intron 60.0%
!! GGCTTGCTAACGGCATGACC+AGG - chr4_1:41884914-41884933 None:intergenic 60.0%
GGTCATGCCGTTAGCAAGCC+TGG + chr4_1:41884914-41884933 Msa0548160:intron 60.0%
ACACCGCTGAGGGAAGGGGA+AGG - chr4_1:41884815-41884834 None:intergenic 65.0%
TGAGGCTGAGAGGGCCTTGC+GGG - chr4_1:41885460-41885479 None:intergenic 65.0%
CTGAGGCTGAGAGGGCCTTG+CGG - chr4_1:41885461-41885480 None:intergenic 65.0%
GAGGCTGAGAGGGCCTTGCG+GGG - chr4_1:41885459-41885478 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41881174 41885864 41881174 ID=Msa0548160;Name=Msa0548160
chr4_1 mRNA 41881174 41885864 41881174 ID=Msa0548160-mRNA-1;Parent=Msa0548160;Name=Msa0548160-mRNA-1;_AED=0.02;_eAED=0.02;_QI=233|1|1|1|1|0.66|6|933|273
chr4_1 exon 41881174 41881698 41881174 ID=Msa0548160-mRNA-1:exon:10739;Parent=Msa0548160-mRNA-1
chr4_1 exon 41882733 41882924 41882733 ID=Msa0548160-mRNA-1:exon:10740;Parent=Msa0548160-mRNA-1
chr4_1 exon 41883032 41883268 41883032 ID=Msa0548160-mRNA-1:exon:10741;Parent=Msa0548160-mRNA-1
chr4_1 exon 41883774 41883990 41883774 ID=Msa0548160-mRNA-1:exon:10742;Parent=Msa0548160-mRNA-1
chr4_1 exon 41884270 41884520 41884270 ID=Msa0548160-mRNA-1:exon:10743;Parent=Msa0548160-mRNA-1
chr4_1 exon 41885299 41885864 41885299 ID=Msa0548160-mRNA-1:exon:10744;Parent=Msa0548160-mRNA-1
chr4_1 five_prime_UTR 41881174 41881406 41881174 ID=Msa0548160-mRNA-1:five_prime_utr;Parent=Msa0548160-mRNA-1
chr4_1 CDS 41881407 41881698 41881407 ID=Msa0548160-mRNA-1:cds;Parent=Msa0548160-mRNA-1
chr4_1 CDS 41882733 41882924 41882733 ID=Msa0548160-mRNA-1:cds;Parent=Msa0548160-mRNA-1
chr4_1 CDS 41883032 41883268 41883032 ID=Msa0548160-mRNA-1:cds;Parent=Msa0548160-mRNA-1
chr4_1 CDS 41883774 41883874 41883774 ID=Msa0548160-mRNA-1:cds;Parent=Msa0548160-mRNA-1
chr4_1 three_prime_UTR 41883875 41883990 41883875 ID=Msa0548160-mRNA-1:three_prime_utr;Parent=Msa0548160-mRNA-1
chr4_1 three_prime_UTR 41884270 41884520 41884270 ID=Msa0548160-mRNA-1:three_prime_utr;Parent=Msa0548160-mRNA-1
chr4_1 three_prime_UTR 41885299 41885864 41885299 ID=Msa0548160-mRNA-1:three_prime_utr;Parent=Msa0548160-mRNA-1
Gene Sequence

>Msa0548160

ATGAATCAAAGAGAGTTGATACGTTTCAAGATATGTGTAAGAGAGTTCATGATTGGGGTTTCAGAACTAACTGTAGAATTCTTAAAAGGTTGCAGAGACATAGTGAAACAAAGCATAGTGAATGAAGATTCTTTCATTGTTAAGAAATTTGGAAAGATTGGGAAGAGAGTGAGAAAACCTTGTGAGAAATTGTTGAACAAATTGAGTTACTTTAATAAGTATTTGCCTGAAGATAAAGACCCACTTCATGCTTGGTTTGTCATCTTGTTCGTTTCTTTACTTGCTTTCTCAGCTTTGTATGTAAATTTTGAGTATGATCAATCTGCCCCACTTGAGAAGCAAGTATTTTTGCATCCTGCTAGTGCTACCCGCATTATGCTTCCGGATGGAAGATACATGGCATACAAGGAGCAAGGTGTTTCGGCTGACAGAGCAAGATTTTCGATTATTTCTCCTCATACTTTCCTTTCCTCTCGGCTTGCAGGAATTCCTGGTGTTAAAGATTCACTGATGGAAGAGTTTGGCGTTCACTTGATTACTTATGATCTGCCTGGTTTTGGTGAGAGCGATCCTCATCCCAAACGAAATCTGGAATCGTCAGCAATAGATATGTCGTTTTTAGCTGATGCTCTTGGTGTTGACAAGTTTTGGATCATTGGTTACTCAAGTGGAAGCAAGCATGCTTGGGCTGCGCTTAGATACATACCTGATAGACTTGCAGGTGCTGCCATGTTTGCCCCCATGGTGAACCCATATGATCCTTTGATGACAAACGAAGAGAGACGAAGAACCTGGAACAAATGGACGCGAAAAGAAAATTGA

Protein sequence

>Msa0548160

MNQRELIRFKICVREFMIGVSELTVEFLKGCRDIVKQSIVNEDSFIVKKFGKIGKRVRKPCEKLLNKLSYFNKYLPEDKDPLHAWFVILFVSLLAFSALYVNFEYDQSAPLEKQVFLHPASATRIMLPDGRYMAYKEQGVSADRARFSIISPHTFLSSRLAGIPGVKDSLMEEFGVHLITYDLPGFGESDPHPKRNLESSAIDMSFLADALGVDKFWIIGYSSGSKHAWAALRYIPDRLAGAAMFAPMVNPYDPLMTNEERRRTWNKWTRKEN*