AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081700 MtrunA17_Chr1g0194341 91.878 197 12 1 1 193 1 197 6.80e-122 344
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081700 AT4G01935.1 57.360 197 76 3 3 193 2 196 2.84e-69 211

Find 78 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATGCTTTACTTCATTA+AGG 0.194939 1_2:+60373708 None:intergenic
TGGACTAGAATTAATGTCTT+TGG 0.248033 1_2:+60373213 None:intergenic
TTGATAGGTTCCTCCCTTGC+TGG 0.255596 1_2:-60374349 Msa0081700:intron
CAAGCTAACATTGAAATCTT+TGG 0.287614 1_2:-60373599 Msa0081700:three_prime_UTR
ACCTAAACACATTATGCATT+TGG 0.289904 1_2:-60373190 Msa0081700:three_prime_UTR
TTCAGGTCTTACATTAATCT+TGG 0.295049 1_2:+60373161 None:intergenic
CTCGACGTTGTCTGCTATTC+CGG 0.310376 1_2:+60373843 None:intergenic
CTTTCAGGTTCCTTCACCTT+TGG 0.316840 1_2:-60373631 Msa0081700:three_prime_UTR
TCTCACAGTTTAAATTTGTT+TGG 0.329632 1_2:-60373679 Msa0081700:three_prime_UTR
TTCACCCTCTCATGCATTGT+TGG 0.330593 1_2:-60373757 Msa0081700:CDS
CCTAAACACATTATGCATTT+GGG 0.336010 1_2:-60373189 Msa0081700:three_prime_UTR
TCACCCTCTCATGCATTGTT+GGG 0.346406 1_2:-60373756 Msa0081700:CDS
TAAATTTGTTTGGCTATTGA+TGG 0.352569 1_2:-60373669 Msa0081700:three_prime_UTR
CCCAAATGCATAATGTGTTT+AGG 0.355683 1_2:+60373189 None:intergenic
ATGCAATACCTTCTTTCAAT+TGG 0.364532 1_2:-60374854 Msa0081700:CDS
ATGAAGCTGTAACGCTAGTT+TGG 0.368316 1_2:+60374744 None:intergenic
AAACTAGCGTTACAGCTTCA+TGG 0.374325 1_2:-60374742 Msa0081700:CDS
ATGCGTAGGGACTCGTTACT+TGG 0.375120 1_2:-60373354 Msa0081700:intron
GTAATGCTTTACTTCATTAA+GGG 0.376469 1_2:+60373709 None:intergenic
ACAACGAAGTAGAAAATGAT+TGG 0.378418 1_2:+60374907 None:intergenic
TTCGGCACAGGATTCGTGTT+TGG 0.393428 1_2:-60374698 Msa0081700:CDS
TGATAGGTTCCTCCCTTGCT+GGG 0.401780 1_2:-60374348 Msa0081700:intron
GCCCACTCCATACAAACATC+TGG 0.405704 1_2:-60374607 Msa0081700:CDS
AGGAACCTGAAAGAAGAAAA+AGG 0.412639 1_2:+60373641 None:intergenic
GGACAGAGTTAAACATAAAC+AGG 0.418315 1_2:-60374998 Msa0081700:five_prime_UTR
ACTCCACACAGTACGCAAAC+GGG 0.436084 1_2:-60374804 Msa0081700:CDS
TTGCAGCAGCAGAGTTCCTA+TGG 0.440373 1_2:-60373807 Msa0081700:CDS
CTTCGAATCTTCAATTGTGT+TGG 0.441295 1_2:-60375074 Msa0081700:five_prime_UTR
AACTCCACACAGTACGCAAA+CGG 0.451385 1_2:-60374805 Msa0081700:CDS
TTGTTGAATGGAACATGGCC+AGG 0.462568 1_2:-60373781 Msa0081700:CDS
TAACTCGATGCTCGCACAAA+AGG 0.467163 1_2:-60374883 Msa0081700:five_prime_UTR
CGCGTGTCACTTTCACTCTT+CGG 0.479757 1_2:-60374716 Msa0081700:CDS
ACCCAGATGTTTGTATGGAG+TGG 0.485990 1_2:+60374605 None:intergenic
TCACTTTCACTCTTCGGCAC+AGG 0.486315 1_2:-60374710 Msa0081700:CDS
TAACATTGAAATCTTTGGCC+AGG 0.494482 1_2:-60373594 Msa0081700:intron
AATGCATAATGTGTTTAGGT+TGG 0.496231 1_2:+60373193 None:intergenic
ACCCTACCCAGATGTTTGTA+TGG 0.505555 1_2:+60374600 None:intergenic
TTCAACTCTACCTTGATGAG+AGG 0.524503 1_2:-60374299 Msa0081700:CDS
GTGTTTGGTCCACTTCTCGA+TGG 0.525210 1_2:-60374683 Msa0081700:CDS
TGTTTAAGACCCTCTCATCA+AGG 0.536972 1_2:+60374289 None:intergenic
ATGCATGAGAGGGTGAAGCC+TGG 0.537143 1_2:+60373763 None:intergenic
TCTTCTTAATTAATTTGTCA+CGG 0.543532 1_2:-60373303 Msa0081700:three_prime_UTR
CCCAGATGTTTGTATGGAGT+GGG 0.545906 1_2:+60374606 None:intergenic
GGCTCTGCTGATTGACAGCA+CGG 0.546704 1_2:+60374765 None:intergenic
GAACTCGTTTCGTACAAGTT+CGG 0.548080 1_2:-60374644 Msa0081700:CDS
AAGATTTCAATGTTAGCTTG+AGG 0.553858 1_2:+60373602 None:intergenic
CAAACCCAACAATGCATGAG+AGG 0.555759 1_2:+60373752 None:intergenic
AAATCATCCAACACACTATG+TGG 0.556785 1_2:-60375019 Msa0081700:intron
TAAAACAACCCCAGCAAGGG+AGG 0.558692 1_2:+60374339 None:intergenic
GATAGGTTCCTCCCTTGCTG+GGG 0.563080 1_2:-60374347 Msa0081700:intron
TTATACGCCTGAAAAGATGA+AGG 0.563449 1_2:+60374827 None:intergenic
AAGGGGAACCAATTGAAAGA+AGG 0.569770 1_2:+60374846 None:intergenic
CAGTAAAACAACCCCAGCAA+GGG 0.570370 1_2:+60374336 None:intergenic
GGTCTTAAACAAAGTTCAAG+AGG 0.574160 1_2:-60374277 Msa0081700:CDS
TGCTGCTGCAAATAATATGT+AGG 0.583565 1_2:+60373819 None:intergenic
CCCACTCCATACAAACATCT+GGG 0.584936 1_2:-60374606 Msa0081700:intron
TATACGCCTGAAAAGATGAA+GGG 0.586025 1_2:+60374828 None:intergenic
AAACGAGTTCGACTCTCGAA+TGG 0.588877 1_2:+60374657 None:intergenic
GCAGTAAAACAACCCCAGCA+AGG 0.592268 1_2:+60374335 None:intergenic
TCAACTCTACCTTGATGAGA+GGG 0.596716 1_2:-60374298 Msa0081700:CDS
AGTGCTGAACTATACAAAGC+CGG 0.608175 1_2:-60373862 Msa0081700:CDS
GAGGATAGTACCAAAGGTGA+AGG 0.610524 1_2:+60373621 None:intergenic
AGTTTATGTCGCTCAAACAG+AGG 0.616371 1_2:-60373269 Msa0081700:three_prime_UTR
GAATGGAGTCCATCGAGAAG+TGG 0.618017 1_2:+60374674 None:intergenic
TAGCTTGAGGATAGTACCAA+AGG 0.624101 1_2:+60373615 None:intergenic
TGCTGATTGACAGCACGGTG+AGG 0.625751 1_2:+60374770 None:intergenic
AAGTTCGGAGCAATTGACAT+TGG 0.628907 1_2:-60374629 Msa0081700:CDS
ATGAATTCTAATATTCGATG+AGG 0.629970 1_2:+60374955 None:intergenic
ATTAAGGGTATCTCAGCTAG+TGG 0.632261 1_2:+60373724 None:intergenic
CTCCACACAGTACGCAAACG+GGG 0.633266 1_2:-60374803 Msa0081700:CDS
AAACCCAACAATGCATGAGA+GGG 0.633565 1_2:+60373753 None:intergenic
TCTTAATTAATTTGTCACGG+TGG 0.650683 1_2:-60373300 Msa0081700:three_prime_UTR
ATACGCCTGAAAAGATGAAG+GGG 0.657329 1_2:+60374829 None:intergenic
GTCTTAAACAAAGTTCAAGA+GGG 0.663204 1_2:-60374276 Msa0081700:CDS
GACCCCGTTTGCGTACTGTG+TGG 0.668600 1_2:+60374801 None:intergenic
AAGAGTGAAAGTGACACGCG+AGG 0.705464 1_2:+60374719 None:intergenic
CGGAATAGCAGACAACGTCG+AGG 0.727407 1_2:-60373842 Msa0081700:CDS
AGTGAGTACTTACATCAGGG+AGG 0.750946 1_2:+60374233 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAACTAAACAAATTAA+TGG + chr1_2:60374013-60374032 None:intergenic 10.0%
!! GTATTTGATTATAAATTTAT+AGG - chr1_2:60374143-60374162 Msa0081700:intron 10.0%
!! AATATAACTAAACAAATTAA+TGG + chr1_2:60374013-60374032 None:intergenic 10.0%
!! GTATTTGATTATAAATTTAT+AGG - chr1_2:60374143-60374162 Msa0081700:intron 10.0%
!! TCAAAACAATTTAATCAAAT+TGG - chr1_2:60374121-60374140 Msa0081700:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG - chr1_2:60374218-60374237 Msa0081700:intron 15.0%
!! TCAAAACAATTTAATCAAAT+TGG - chr1_2:60374121-60374140 Msa0081700:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG - chr1_2:60374218-60374237 Msa0081700:intron 15.0%
!! ATACAAACGCATAAAATATA+TGG + chr1_2:60373643-60373662 None:intergenic 20.0%
!! TGTTATAAGCTAATATGAAT+AGG + chr1_2:60374082-60374101 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG - chr1_2:60374217-60374236 Msa0081700:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG - chr1_2:60374219-60374238 Msa0081700:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG + chr1_2:60374656-60374675 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG - chr1_2:60374841-60374860 Msa0081700:CDS 20.0%
!!! GTATTTATTTTCTAAACTTC+AGG + chr1_2:60375003-60375022 None:intergenic 20.0%
!! ATACAAACGCATAAAATATA+TGG + chr1_2:60373643-60373662 None:intergenic 20.0%
!! TGTTATAAGCTAATATGAAT+AGG + chr1_2:60374082-60374101 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG - chr1_2:60374217-60374236 Msa0081700:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG - chr1_2:60374219-60374238 Msa0081700:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG + chr1_2:60374656-60374675 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG - chr1_2:60374841-60374860 Msa0081700:CDS 20.0%
!!! GTATTTATTTTCTAAACTTC+AGG + chr1_2:60375003-60375022 None:intergenic 20.0%
! ATGAATTCTAATATTCGATG+AGG + chr1_2:60373192-60373211 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG + chr1_2:60373232-60373251 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG + chr1_2:60373233-60373252 None:intergenic 25.0%
!!! TTTGAATTCACTTTTAGTAG+CGG - chr1_2:60373688-60373707 Msa0081700:three_prime_UTR 25.0%
! TTACCTTGTAACAGTATAAT+TGG - chr1_2:60373740-60373759 Msa0081700:CDS 25.0%
! TTGTCCAAATTGATATTGAT+AGG - chr1_2:60373780-60373799 Msa0081700:CDS 25.0%
! GTAATGCTTTACTTCATTAA+GGG + chr1_2:60374438-60374457 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG + chr1_2:60374439-60374458 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG - chr1_2:60374465-60374484 Msa0081700:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG - chr1_2:60374475-60374494 Msa0081700:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG + chr1_2:60374587-60374606 None:intergenic 25.0%
! ATGAATTCTAATATTCGATG+AGG + chr1_2:60373192-60373211 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG + chr1_2:60373232-60373251 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG + chr1_2:60373233-60373252 None:intergenic 25.0%
!!! TTTGAATTCACTTTTAGTAG+CGG - chr1_2:60373688-60373707 Msa0081700:three_prime_UTR 25.0%
! TTACCTTGTAACAGTATAAT+TGG - chr1_2:60373740-60373759 Msa0081700:CDS 25.0%
! TTGTCCAAATTGATATTGAT+AGG - chr1_2:60373780-60373799 Msa0081700:CDS 25.0%
! GTAATGCTTTACTTCATTAA+GGG + chr1_2:60374438-60374457 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG + chr1_2:60374439-60374458 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG - chr1_2:60374465-60374484 Msa0081700:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG - chr1_2:60374475-60374494 Msa0081700:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG + chr1_2:60374587-60374606 None:intergenic 25.0%
ACAACGAAGTAGAAAATGAT+TGG + chr1_2:60373240-60373259 None:intergenic 30.0%
ATGCAATACCTTCTTTCAAT+TGG - chr1_2:60373290-60373309 Msa0081700:three_prime_UTR 30.0%
! CTTTTACCACTCTAAATCAT+TGG - chr1_2:60373593-60373612 Msa0081700:intron 30.0%
GGAACCTATCAATATCAATT+TGG + chr1_2:60373787-60373806 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG - chr1_2:60373868-60373887 Msa0081700:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG + chr1_2:60374209-60374228 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG - chr1_2:60374351-60374370 Msa0081700:intron 30.0%
TTCCATTCAACAAAAACCAT+AGG + chr1_2:60374356-60374375 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG + chr1_2:60374545-60374564 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG - chr1_2:60374545-60374564 Msa0081700:intron 30.0%
TTTCATATTGTTGTCGTGTT+TGG + chr1_2:60374723-60374742 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG - chr1_2:60374726-60374745 Msa0081700:CDS 30.0%
ATGAATTCTATTCTATGCGT+AGG - chr1_2:60374776-60374795 Msa0081700:CDS 30.0%
TGAATTCTATTCTATGCGTA+GGG - chr1_2:60374777-60374796 Msa0081700:CDS 30.0%
!! TCTTAATTAATTTGTCACGG+TGG - chr1_2:60374844-60374863 Msa0081700:CDS 30.0%
! TGGACTAGAATTAATGTCTT+TGG + chr1_2:60374934-60374953 None:intergenic 30.0%
AATGCATAATGTGTTTAGGT+TGG + chr1_2:60374954-60374973 None:intergenic 30.0%
ACCTAAACACATTATGCATT+TGG - chr1_2:60374954-60374973 Msa0081700:five_prime_UTR 30.0%
CCTAAACACATTATGCATTT+GGG - chr1_2:60374955-60374974 Msa0081700:five_prime_UTR 30.0%
TTCAGGTCTTACATTAATCT+TGG + chr1_2:60374986-60375005 None:intergenic 30.0%
ACAACGAAGTAGAAAATGAT+TGG + chr1_2:60373240-60373259 None:intergenic 30.0%
ATGCAATACCTTCTTTCAAT+TGG - chr1_2:60373290-60373309 Msa0081700:three_prime_UTR 30.0%
! CTTTTACCACTCTAAATCAT+TGG - chr1_2:60373593-60373612 Msa0081700:intron 30.0%
GGAACCTATCAATATCAATT+TGG + chr1_2:60373787-60373806 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG - chr1_2:60373868-60373887 Msa0081700:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG + chr1_2:60374209-60374228 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG - chr1_2:60374351-60374370 Msa0081700:intron 30.0%
TTCCATTCAACAAAAACCAT+AGG + chr1_2:60374356-60374375 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG + chr1_2:60374545-60374564 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG - chr1_2:60374545-60374564 Msa0081700:intron 30.0%
TTTCATATTGTTGTCGTGTT+TGG + chr1_2:60374723-60374742 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG - chr1_2:60374726-60374745 Msa0081700:CDS 30.0%
ATGAATTCTATTCTATGCGT+AGG - chr1_2:60374776-60374795 Msa0081700:CDS 30.0%
TGAATTCTATTCTATGCGTA+GGG - chr1_2:60374777-60374796 Msa0081700:CDS 30.0%
!! TCTTAATTAATTTGTCACGG+TGG - chr1_2:60374844-60374863 Msa0081700:CDS 30.0%
! TGGACTAGAATTAATGTCTT+TGG + chr1_2:60374934-60374953 None:intergenic 30.0%
AATGCATAATGTGTTTAGGT+TGG + chr1_2:60374954-60374973 None:intergenic 30.0%
ACCTAAACACATTATGCATT+TGG - chr1_2:60374954-60374973 Msa0081700:five_prime_UTR 30.0%
CCTAAACACATTATGCATTT+GGG - chr1_2:60374955-60374974 Msa0081700:five_prime_UTR 30.0%
TTCAGGTCTTACATTAATCT+TGG + chr1_2:60374986-60375005 None:intergenic 30.0%
AAATCATCCAACACACTATG+TGG - chr1_2:60373125-60373144 Msa0081700:three_prime_UTR 35.0%
GGACAGAGTTAAACATAAAC+AGG - chr1_2:60373146-60373165 Msa0081700:three_prime_UTR 35.0%
TATACGCCTGAAAAGATGAA+GGG + chr1_2:60373319-60373338 None:intergenic 35.0%
TTATACGCCTGAAAAGATGA+AGG + chr1_2:60373320-60373339 None:intergenic 35.0%
TTCAGACCAATGATTTAGAG+TGG + chr1_2:60373602-60373621 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG + chr1_2:60373732-60373751 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG + chr1_2:60373733-60373752 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG + chr1_2:60373746-60373765 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG - chr1_2:60373867-60373886 Msa0081700:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG + chr1_2:60374328-60374347 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG - chr1_2:60374358-60374377 Msa0081700:intron 35.0%
! CATCTCCTTTTTCTTCTTTC+AGG - chr1_2:60374498-60374517 Msa0081700:intron 35.0%
AGGAACCTGAAAGAAGAAAA+AGG + chr1_2:60374506-60374525 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG - chr1_2:60374550-60374569 Msa0081700:intron 35.0%
! TATTAAGGTGTCAATGTGTG+AGG + chr1_2:60374641-60374660 None:intergenic 35.0%
CCCAAATGCATAATGTGTTT+AGG + chr1_2:60374958-60374977 None:intergenic 35.0%
TCCAACACAATTGAAGATTC+GGG + chr1_2:60373074-60373093 None:intergenic 35.0%
GTCCAACACAATTGAAGATT+CGG + chr1_2:60373075-60373094 None:intergenic 35.0%
AAATCATCCAACACACTATG+TGG - chr1_2:60373125-60373144 Msa0081700:three_prime_UTR 35.0%
GGACAGAGTTAAACATAAAC+AGG - chr1_2:60373146-60373165 Msa0081700:three_prime_UTR 35.0%
TATACGCCTGAAAAGATGAA+GGG + chr1_2:60373319-60373338 None:intergenic 35.0%
TTATACGCCTGAAAAGATGA+AGG + chr1_2:60373320-60373339 None:intergenic 35.0%
TTCAGACCAATGATTTAGAG+TGG + chr1_2:60373602-60373621 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG + chr1_2:60373732-60373751 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG + chr1_2:60373733-60373752 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG + chr1_2:60373746-60373765 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG - chr1_2:60373867-60373886 Msa0081700:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG + chr1_2:60374328-60374347 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG - chr1_2:60374358-60374377 Msa0081700:intron 35.0%
! CATCTCCTTTTTCTTCTTTC+AGG - chr1_2:60374498-60374517 Msa0081700:intron 35.0%
AGGAACCTGAAAGAAGAAAA+AGG + chr1_2:60374506-60374525 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG - chr1_2:60374550-60374569 Msa0081700:intron 35.0%
! TATTAAGGTGTCAATGTGTG+AGG + chr1_2:60374641-60374660 None:intergenic 35.0%
CCCAAATGCATAATGTGTTT+AGG + chr1_2:60374958-60374977 None:intergenic 35.0%
AAGGGGAACCAATTGAAAGA+AGG + chr1_2:60373301-60373320 None:intergenic 40.0%
ATACGCCTGAAAAGATGAAG+GGG + chr1_2:60373318-60373337 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG + chr1_2:60373403-60373422 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG - chr1_2:60373402-60373421 Msa0081700:intron 40.0%
GAACTCGTTTCGTACAAGTT+CGG - chr1_2:60373500-60373519 Msa0081700:intron 40.0%
AAGTTCGGAGCAATTGACAT+TGG - chr1_2:60373515-60373534 Msa0081700:intron 40.0%
TCCATACAAACATCTGGGTA+GGG - chr1_2:60373543-60373562 Msa0081700:intron 40.0%
ATGCGTTTGTATGTGTGCTT+CGG - chr1_2:60373651-60373670 Msa0081700:three_prime_UTR 40.0%
GTGCTTCGGGATAAATTATG+CGG - chr1_2:60373665-60373684 Msa0081700:three_prime_UTR 40.0%
TTCAACTCTACCTTGATGAG+AGG - chr1_2:60373845-60373864 Msa0081700:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG - chr1_2:60373846-60373865 Msa0081700:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG + chr1_2:60373858-60373877 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG + chr1_2:60373917-60373936 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG + chr1_2:60373918-60373937 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG - chr1_2:60374282-60374301 Msa0081700:CDS 40.0%
AAACCCAACAATGCATGAGA+GGG + chr1_2:60374394-60374413 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG + chr1_2:60374423-60374442 None:intergenic 40.0%
TAGCTTGAGGATAGTACCAA+AGG + chr1_2:60374532-60374551 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG + chr1_2:60374571-60374590 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG - chr1_2:60374875-60374894 Msa0081700:exon 40.0%
AAGGGGAACCAATTGAAAGA+AGG + chr1_2:60373301-60373320 None:intergenic 40.0%
ATACGCCTGAAAAGATGAAG+GGG + chr1_2:60373318-60373337 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG + chr1_2:60373403-60373422 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG - chr1_2:60373402-60373421 Msa0081700:intron 40.0%
GAACTCGTTTCGTACAAGTT+CGG - chr1_2:60373500-60373519 Msa0081700:intron 40.0%
AAGTTCGGAGCAATTGACAT+TGG - chr1_2:60373515-60373534 Msa0081700:intron 40.0%
TCCATACAAACATCTGGGTA+GGG - chr1_2:60373543-60373562 Msa0081700:intron 40.0%
ATGCGTTTGTATGTGTGCTT+CGG - chr1_2:60373651-60373670 Msa0081700:three_prime_UTR 40.0%
GTGCTTCGGGATAAATTATG+CGG - chr1_2:60373665-60373684 Msa0081700:three_prime_UTR 40.0%
TTCAACTCTACCTTGATGAG+AGG - chr1_2:60373845-60373864 Msa0081700:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG - chr1_2:60373846-60373865 Msa0081700:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG + chr1_2:60373858-60373877 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG + chr1_2:60373917-60373936 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG + chr1_2:60373918-60373937 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG - chr1_2:60374282-60374301 Msa0081700:CDS 40.0%
AAACCCAACAATGCATGAGA+GGG + chr1_2:60374394-60374413 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG + chr1_2:60374423-60374442 None:intergenic 40.0%
TAGCTTGAGGATAGTACCAA+AGG + chr1_2:60374532-60374551 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG + chr1_2:60374571-60374590 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG - chr1_2:60374875-60374894 Msa0081700:exon 40.0%
ACTCTGTCCACATAGTGTGT+TGG + chr1_2:60373135-60373154 None:intergenic 45.0%
TAACTCGATGCTCGCACAAA+AGG - chr1_2:60373261-60373280 Msa0081700:three_prime_UTR 45.0%
! TGGTTCCCCTTCATCTTTTC+AGG - chr1_2:60373310-60373329 Msa0081700:three_prime_UTR 45.0%
AACTCCACACAGTACGCAAA+CGG - chr1_2:60373339-60373358 Msa0081700:three_prime_UTR 45.0%
AAACGAGTTCGACTCTCGAA+TGG + chr1_2:60373490-60373509 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG + chr1_2:60373541-60373560 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG - chr1_2:60373538-60373557 Msa0081700:intron 45.0%
ACCCAGATGTTTGTATGGAG+TGG + chr1_2:60373542-60373561 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG - chr1_2:60373542-60373561 Msa0081700:intron 45.0%
ACCCTACCCAGATGTTTGTA+TGG + chr1_2:60373547-60373566 None:intergenic 45.0%
TACAAACATCTGGGTAGGGT+AGG - chr1_2:60373547-60373566 Msa0081700:intron 45.0%
TGCGTTTGTATGTGTGCTTC+GGG - chr1_2:60373652-60373671 Msa0081700:three_prime_UTR 45.0%
! ACTTTTAGTAGCGGTGACGA+TGG - chr1_2:60373697-60373716 Msa0081700:three_prime_UTR 45.0%
CAGTAAAACAACCCCAGCAA+GGG + chr1_2:60373811-60373830 None:intergenic 45.0%
AGTGAGTACTTACATCAGGG+AGG + chr1_2:60373914-60373933 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG - chr1_2:60374363-60374382 Msa0081700:intron 45.0%
TTCACCCTCTCATGCATTGT+TGG - chr1_2:60374387-60374406 Msa0081700:intron 45.0%
TCACCCTCTCATGCATTGTT+GGG - chr1_2:60374388-60374407 Msa0081700:intron 45.0%
CAAACCCAACAATGCATGAG+AGG + chr1_2:60374395-60374414 None:intergenic 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG - chr1_2:60374513-60374532 Msa0081700:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG + chr1_2:60374526-60374545 None:intergenic 45.0%
ACTCTGTCCACATAGTGTGT+TGG + chr1_2:60373135-60373154 None:intergenic 45.0%
TAACTCGATGCTCGCACAAA+AGG - chr1_2:60373261-60373280 Msa0081700:three_prime_UTR 45.0%
! TGGTTCCCCTTCATCTTTTC+AGG - chr1_2:60373310-60373329 Msa0081700:three_prime_UTR 45.0%
AACTCCACACAGTACGCAAA+CGG - chr1_2:60373339-60373358 Msa0081700:three_prime_UTR 45.0%
AAACGAGTTCGACTCTCGAA+TGG + chr1_2:60373490-60373509 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG + chr1_2:60373541-60373560 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG - chr1_2:60373538-60373557 Msa0081700:intron 45.0%
ACCCAGATGTTTGTATGGAG+TGG + chr1_2:60373542-60373561 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG - chr1_2:60373542-60373561 Msa0081700:intron 45.0%
ACCCTACCCAGATGTTTGTA+TGG + chr1_2:60373547-60373566 None:intergenic 45.0%
TACAAACATCTGGGTAGGGT+AGG - chr1_2:60373547-60373566 Msa0081700:intron 45.0%
TGCGTTTGTATGTGTGCTTC+GGG - chr1_2:60373652-60373671 Msa0081700:three_prime_UTR 45.0%
! ACTTTTAGTAGCGGTGACGA+TGG - chr1_2:60373697-60373716 Msa0081700:three_prime_UTR 45.0%
CAGTAAAACAACCCCAGCAA+GGG + chr1_2:60373811-60373830 None:intergenic 45.0%
AGTGAGTACTTACATCAGGG+AGG + chr1_2:60373914-60373933 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG - chr1_2:60374363-60374382 Msa0081700:intron 45.0%
TTCACCCTCTCATGCATTGT+TGG - chr1_2:60374387-60374406 Msa0081700:intron 45.0%
TCACCCTCTCATGCATTGTT+GGG - chr1_2:60374388-60374407 Msa0081700:intron 45.0%
CAAACCCAACAATGCATGAG+AGG + chr1_2:60374395-60374414 None:intergenic 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG - chr1_2:60374513-60374532 Msa0081700:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG + chr1_2:60374526-60374545 None:intergenic 45.0%
CAGTATGAGAACACGAGCAG+TGG + chr1_2:60373097-60373116 None:intergenic 50.0%
ACTCCACACAGTACGCAAAC+GGG - chr1_2:60373340-60373359 Msa0081700:three_prime_UTR 50.0%
AAGAGTGAAAGTGACACGCG+AGG + chr1_2:60373428-60373447 None:intergenic 50.0%
!! CGCGTGTCACTTTCACTCTT+CGG - chr1_2:60373428-60373447 Msa0081700:intron 50.0%
TCACTTTCACTCTTCGGCAC+AGG - chr1_2:60373434-60373453 Msa0081700:intron 50.0%
TTCGGCACAGGATTCGTGTT+TGG - chr1_2:60373446-60373465 Msa0081700:intron 50.0%
GTGTTTGGTCCACTTCTCGA+TGG - chr1_2:60373461-60373480 Msa0081700:intron 50.0%
GAATGGAGTCCATCGAGAAG+TGG + chr1_2:60373473-60373492 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG - chr1_2:60373537-60373556 Msa0081700:intron 50.0%
TTGATAGGTTCCTCCCTTGC+TGG - chr1_2:60373795-60373814 Msa0081700:CDS 50.0%
TGATAGGTTCCTCCCTTGCT+GGG - chr1_2:60373796-60373815 Msa0081700:CDS 50.0%
TAAAACAACCCCAGCAAGGG+AGG + chr1_2:60373808-60373827 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG + chr1_2:60373812-60373831 None:intergenic 50.0%
!! GCTGGGGTTGTTTTACTGCT+CGG - chr1_2:60373813-60373832 Msa0081700:CDS 50.0%
!! GGGTTGTTTTACTGCTCGGT+TGG - chr1_2:60373817-60373836 Msa0081700:CDS 50.0%
CTCGACGTTGTCTGCTATTC+CGG + chr1_2:60374304-60374323 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG - chr1_2:60374337-60374356 Msa0081700:CDS 50.0%
ATGCGTAGGGACTCGTTACT+TGG - chr1_2:60374790-60374809 Msa0081700:CDS 50.0%
CAGTATGAGAACACGAGCAG+TGG + chr1_2:60373097-60373116 None:intergenic 50.0%
ACTCCACACAGTACGCAAAC+GGG - chr1_2:60373340-60373359 Msa0081700:three_prime_UTR 50.0%
AAGAGTGAAAGTGACACGCG+AGG + chr1_2:60373428-60373447 None:intergenic 50.0%
!! CGCGTGTCACTTTCACTCTT+CGG - chr1_2:60373428-60373447 Msa0081700:intron 50.0%
TCACTTTCACTCTTCGGCAC+AGG - chr1_2:60373434-60373453 Msa0081700:intron 50.0%
TTCGGCACAGGATTCGTGTT+TGG - chr1_2:60373446-60373465 Msa0081700:intron 50.0%
GTGTTTGGTCCACTTCTCGA+TGG - chr1_2:60373461-60373480 Msa0081700:intron 50.0%
GAATGGAGTCCATCGAGAAG+TGG + chr1_2:60373473-60373492 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG - chr1_2:60373537-60373556 Msa0081700:intron 50.0%
TTGATAGGTTCCTCCCTTGC+TGG - chr1_2:60373795-60373814 Msa0081700:CDS 50.0%
TGATAGGTTCCTCCCTTGCT+GGG - chr1_2:60373796-60373815 Msa0081700:CDS 50.0%
TAAAACAACCCCAGCAAGGG+AGG + chr1_2:60373808-60373827 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG + chr1_2:60373812-60373831 None:intergenic 50.0%
!! GCTGGGGTTGTTTTACTGCT+CGG - chr1_2:60373813-60373832 Msa0081700:CDS 50.0%
!! GGGTTGTTTTACTGCTCGGT+TGG - chr1_2:60373817-60373836 Msa0081700:CDS 50.0%
CTCGACGTTGTCTGCTATTC+CGG + chr1_2:60374304-60374323 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG - chr1_2:60374337-60374356 Msa0081700:CDS 50.0%
ATGCGTAGGGACTCGTTACT+TGG - chr1_2:60374790-60374809 Msa0081700:CDS 50.0%
CTCCACACAGTACGCAAACG+GGG - chr1_2:60373341-60373360 Msa0081700:three_prime_UTR 55.0%
! TGCTGATTGACAGCACGGTG+AGG + chr1_2:60373377-60373396 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG + chr1_2:60373382-60373401 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG - chr1_2:60373797-60373816 Msa0081700:CDS 55.0%
CGGAATAGCAGACAACGTCG+AGG - chr1_2:60374302-60374321 Msa0081700:CDS 55.0%
ATGCATGAGAGGGTGAAGCC+TGG + chr1_2:60374384-60374403 None:intergenic 55.0%
CTCCACACAGTACGCAAACG+GGG - chr1_2:60373341-60373360 Msa0081700:three_prime_UTR 55.0%
! TGCTGATTGACAGCACGGTG+AGG + chr1_2:60373377-60373396 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG + chr1_2:60373382-60373401 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG - chr1_2:60373797-60373816 Msa0081700:CDS 55.0%
CGGAATAGCAGACAACGTCG+AGG - chr1_2:60374302-60374321 Msa0081700:CDS 55.0%
ATGCATGAGAGGGTGAAGCC+TGG + chr1_2:60374384-60374403 None:intergenic 55.0%
GACCCCGTTTGCGTACTGTG+TGG + chr1_2:60373346-60373365 None:intergenic 60.0%
GACCCCGTTTGCGTACTGTG+TGG + chr1_2:60373346-60373365 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 60373073 60375093 60373073 ID=Msa0081700;Name=Msa0081700
chr1_2 mRNA 60373073 60375093 60373073 ID=Msa0081700-mRNA-1;Parent=Msa0081700;Name=Msa0081700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=177|1|1|1|0.5|0.2|5|418|193
chr1_2 exon 60373073 60373368 60373073 ID=Msa0081700-mRNA-1:exon:19667;Parent=Msa0081700-mRNA-1
chr1_2 exon 60373595 60373909 60373595 ID=Msa0081700-mRNA-1:exon:19666;Parent=Msa0081700-mRNA-1
chr1_2 exon 60374246 60374364 60374246 ID=Msa0081700-mRNA-1:exon:19665;Parent=Msa0081700-mRNA-1
chr1_2 exon 60374607 60375027 60374607 ID=Msa0081700-mRNA-1:exon:19664;Parent=Msa0081700-mRNA-1
chr1_2 exon 60375068 60375093 60375068 ID=Msa0081700-mRNA-1:exon:19663;Parent=Msa0081700-mRNA-1
chr1_2 five_prime_UTR 60375068 60375093 60375068 ID=Msa0081700-mRNA-1:five_prime_utr;Parent=Msa0081700-mRNA-1
chr1_2 five_prime_UTR 60374877 60375027 60374877 ID=Msa0081700-mRNA-1:five_prime_utr;Parent=Msa0081700-mRNA-1
chr1_2 CDS 60374607 60374876 60374607 ID=Msa0081700-mRNA-1:cds;Parent=Msa0081700-mRNA-1
chr1_2 CDS 60374246 60374364 60374246 ID=Msa0081700-mRNA-1:cds;Parent=Msa0081700-mRNA-1
chr1_2 CDS 60373717 60373909 60373717 ID=Msa0081700-mRNA-1:cds;Parent=Msa0081700-mRNA-1
chr1_2 three_prime_UTR 60373595 60373716 60373595 ID=Msa0081700-mRNA-1:three_prime_utr;Parent=Msa0081700-mRNA-1
chr1_2 three_prime_UTR 60373073 60373368 60373073 ID=Msa0081700-mRNA-1:three_prime_utr;Parent=Msa0081700-mRNA-1
Gene Sequence

>Msa0081700

ATGCAATACCTTCTTTCAATTGGTTCCCCTTCATCTTTTCAGGCGTATAAACTCCACACAGTACGCAAACGGGGTCTGCTTAAGCCTCACCGTGCTGTCAATCAGCAGAGCCAAACTAGCGTTACAGCTTCATGGCCTCGCGTGTCACTTTCACTCTTCGGCACAGGATTCGTGTTTGGTCCACTTCTCGATGGACTCCATTCGAGAGTCGAACTCGTTTCGTACAAGTTCGGAGCAATTGACATTGGCCCACTCCATACAAACATCTGGGTTCCTCCCTTGCTGGGGTTGTTTTACTGCTCGGTTGGTTTGCTTCAACTCTACCTTGATGAGAGGGTCTTAAACAAAGTTCAAGAGGGAAGTTTAACAAAAACAATATCCTCCCTGATATTAGTAGCGTTGTTCATAGAGTTGAGTGCTGAACTATACAAAGCCGGAATAGCAGACAACGTCGAGGCCTACATATTATTTGCAGCAGCAGAGTTCCTATGGTTTTTGTTGAATGGAACATGGCCAGGCTTCACCCTCTCATGCATTGTTGGGTTTGCTTGTCCACTAGCTGAGATACCCTTAATGAAGTAA

Protein sequence

>Msa0081700

MQYLLSIGSPSSFQAYKLHTVRKRGLLKPHRAVNQQSQTSVTASWPRVSLSLFGTGFVFGPLLDGLHSRVELVSYKFGAIDIGPLHTNIWVPPLLGLFYCSVGLLQLYLDERVLNKVQEGSLTKTISSLILVALFIELSAELYKAGIADNVEAYILFAAAEFLWFLLNGTWPGFTLSCIVGFACPLAEIPLMK*