AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568050 MtrunA17_Chr8g0382621 98.627 510 7 0 1 510 1 510 0.0 1044
Msa0568050 MtrunA17_Chr3g0124321 92.157 510 40 0 1 510 1 510 0.0 989
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568050 AT5G10170.1 88.431 510 59 0 1 510 1 510 0.0 952
Msa0568050 AT2G22240.1 87.255 510 65 0 1 510 1 510 0.0 946
Msa0568050 AT4G39800.1 86.497 511 68 1 1 510 1 511 0.0 930
Msa0568050 AT2G22240.3 86.667 450 60 0 1 450 1 450 0.0 830
Msa0568050 AT2G22240.2 87.895 380 46 0 131 510 1 380 0.0 710

Find 160 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATTTAAGGGAGTTTA+AGG 0.110058 4_1:+69651289 Msa0568050:intron
ACAAACAAATGTCCCTAAAT+TGG 0.138163 4_1:+69649068 Msa0568050:CDS
ACATTATAGTACCCCAATTT+AGG 0.150535 4_1:-69649081 None:intergenic
AGTTCGGTTATATAGGAATT+TGG 0.170776 4_1:+69652742 Msa0568050:three_prime_UTR
ATTCAGCAAGCCAATTATTT+TGG 0.191379 4_1:+69650077 Msa0568050:CDS
AGACCATGTTGTTGTTATTA+AGG 0.225855 4_1:+69652066 Msa0568050:CDS
AAACTCATATTTGACTGTTT+TGG 0.228775 4_1:-69649040 None:intergenic
AGTTAGCGAACCAAAATAAT+TGG 0.245511 4_1:-69650087 None:intergenic
TGACACTACTGAAAATCTTT+TGG 0.270475 4_1:+69651391 Msa0568050:CDS
AACAGCAACGCCATTCTCTA+TGG 0.271568 4_1:+69652028 Msa0568050:CDS
GAACAAATCACAAGAGAAAA+AGG 0.283633 4_1:-69648861 None:intergenic
CGTGCTAACAACATCATTAA+AGG 0.294119 4_1:+69651149 Msa0568050:CDS
TGATTGATCTGGCCATTAAA+AGG 0.306030 4_1:+69651643 Msa0568050:CDS
TTGTCAATTCCATCTAGTTT+TGG 0.320706 4_1:+69652959 Msa0568050:three_prime_UTR
CAAACAAATGTCCCTAAATT+GGG 0.324468 4_1:+69649069 Msa0568050:CDS
AGGACCAAGTCCAAGATAAT+TGG 0.325843 4_1:-69652293 None:intergenic
CTTCACTTCACTTGTATTCA+AGG 0.329578 4_1:-69652715 None:intergenic
GTTCGGTTATATAGGAATTT+GGG 0.332244 4_1:+69652743 Msa0568050:three_prime_UTR
AATAGTGAGTTACAACCATT+TGG 0.336347 4_1:+69651919 Msa0568050:CDS
ACCTTCAACCCTCTATGCTT+TGG 0.341561 4_1:+69651445 Msa0568050:CDS
CACATGTGAAGATTCACTTT+TGG 0.343814 4_1:+69652265 Msa0568050:CDS
GAATCTATGGTTCCACTTCC+TGG 0.352749 4_1:+69651086 Msa0568050:CDS
ACCACAAACCTTCCGCTCTA+AGG 0.355614 4_1:+69651970 Msa0568050:CDS
TTAATTTCAGGGGTATATCT+TGG 0.355833 4_1:+69650039 Msa0568050:intron
CAGGGTAATGCTTGTTGGGT+GGG 0.357428 4_1:+69649198 Msa0568050:intron
TTTGGCTGCTCCAATTATCT+TGG 0.359211 4_1:+69652283 Msa0568050:CDS
CCTCATGTTCAGATTTGAAC+TGG 0.361883 4_1:-69652340 None:intergenic
CATTATAGTACCCCAATTTA+GGG 0.361937 4_1:-69649080 None:intergenic
AAGGCCATACATGGAATCTA+TGG 0.367694 4_1:+69651073 Msa0568050:CDS
TTCATCAGGGTTGATTGATC+TGG 0.389212 4_1:+69651632 Msa0568050:intron
TGCTCCAATTATCTTGGACT+TGG 0.391793 4_1:+69652289 Msa0568050:CDS
CATCCTCAGTTACCTCTCTA+AGG 0.392661 4_1:+69652483 Msa0568050:CDS
TGATTAGCAGCAATGAAATC+AGG 0.394949 4_1:-69651119 None:intergenic
TAGACCTACAGAAACAATTA+AGG 0.395631 4_1:+69651054 Msa0568050:CDS
ATTAAAAGGAATAGTTTGAT+TGG 0.397719 4_1:+69651657 Msa0568050:CDS
GTTGATTTCCTTGTGGGAGC+TGG 0.403764 4_1:+69651726 Msa0568050:CDS
GAAAATGTTCCTTTCATCAA+TGG 0.409621 4_1:+69651479 Msa0568050:CDS
AACCATTTGGGAAACAATGA+TGG 0.410930 4_1:+69651932 Msa0568050:CDS
AAGTAACAGTTCGGTTATAT+AGG 0.411072 4_1:+69652735 Msa0568050:three_prime_UTR
TAATTTCAGGGGTATATCTT+GGG 0.413688 4_1:+69650040 Msa0568050:intron
AATGTTTATCGAGAATTTCA+AGG 0.417336 4_1:+69648903 Msa0568050:exon
TTAATAACAACAACATGGTC+TGG 0.419106 4_1:-69652064 None:intergenic
GAGTAACGTTGTTGATGATA+TGG 0.424116 4_1:+69652003 Msa0568050:CDS
TACAGAAAACCAAAACTAGA+TGG 0.424459 4_1:-69652968 None:intergenic
GTGTTGGTTGATTTCCTTGT+GGG 0.425027 4_1:+69651720 Msa0568050:CDS
TTGGAAGAAGGCTCTTGAAT+GGG 0.425690 4_1:-69650160 None:intergenic
TTCCATCATTGTTTCCCAAA+TGG 0.426194 4_1:-69651934 None:intergenic
TCCTTAGAGCGGAAGGTTTG+TGG 0.427164 4_1:-69651971 None:intergenic
GATTTCATTGCTGCTAATCA+AGG 0.429621 4_1:+69651122 Msa0568050:CDS
ATTGTCAGGGTAATGCTTGT+TGG 0.429729 4_1:+69649193 Msa0568050:intron
ATTATTACATATGTTTAAGA+TGG 0.431777 4_1:-69652914 None:intergenic
TTGTCAGGGTAATGCTTGTT+GGG 0.436978 4_1:+69649194 Msa0568050:intron
TTTGACAATGCATTCACAAC+TGG 0.437976 4_1:-69652626 None:intergenic
TCTGTTCTCATGAACAAGTT+CGG 0.440423 4_1:-69648989 None:intergenic
AGGACATTGTGTGGGGAGGA+TGG 0.450002 4_1:+69650976 Msa0568050:CDS
ATCATCAACAACGTTACTCT+TGG 0.458421 4_1:-69651999 None:intergenic
TCAAGGATCATGTTGTTCTC+AGG 0.459581 4_1:-69652698 None:intergenic
CCTCCCCACACAATGTCCTC+AGG 0.463901 4_1:-69650972 None:intergenic
TCAGGGTAATGCTTGTTGGG+TGG 0.469540 4_1:+69649197 Msa0568050:intron
CTGATGCCATGGGCAGAGCT+AGG 0.472135 4_1:+69651021 Msa0568050:CDS
TTTGCAGTATGTGCCTTATG+TGG 0.475408 4_1:+69652166 Msa0568050:intron
GGGCATGTATTTCCTCCCCT+TGG 0.477592 4_1:-69650139 None:intergenic
GCCAAAGCATAGAGGGTTGA+AGG 0.480940 4_1:-69651446 None:intergenic
GTCAAAGCAGAGAGCTATGC+TGG 0.484045 4_1:+69652643 Msa0568050:CDS
GGAACCATAGATTCCATGTA+TGG 0.485779 4_1:-69651077 None:intergenic
AGGGTAATGCTTGTTGGGTG+GGG 0.488044 4_1:+69649199 Msa0568050:intron
ATTGGAAGAAGGCTCTTGAA+TGG 0.495541 4_1:-69650161 None:intergenic
GTTGGGTGGGGTGGAAACAA+TGG 0.495989 4_1:+69649211 Msa0568050:CDS
AACGCCATTCTCTATGGGCC+TGG 0.498201 4_1:+69652034 Msa0568050:CDS
CCTCAAAACACCTTTGTCCC+AGG 0.498483 4_1:+69651506 Msa0568050:CDS
CTCAGAGTGGGGTCTTTCCA+AGG 0.499911 4_1:+69650122 Msa0568050:CDS
TAAAGATATAAACAATCCAT+TGG 0.499981 4_1:-69653012 None:intergenic
GTCTCTGTGTACTTCACGTT+AGG 0.503662 4_1:-69648934 None:intergenic
AAAAGGAATAGTTTGATTGG+TGG 0.504764 4_1:+69651660 Msa0568050:CDS
CTCTGCCCATGGCATCAGCT+AGG 0.505167 4_1:-69651016 None:intergenic
GTAATGCTTGTTGGGTGGGG+TGG 0.506229 4_1:+69649202 Msa0568050:CDS
ATGGCCTTAATTGTTTCTGT+AGG 0.506495 4_1:-69651058 None:intergenic
TATGAGAGCTTGTGTTGGAT+TGG 0.506967 4_1:+69652673 Msa0568050:CDS
ATAGTGAGTTACAACCATTT+GGG 0.509679 4_1:+69651920 Msa0568050:CDS
TTGACAAGGTTGTTGTACTC+TGG 0.509739 4_1:+69651324 Msa0568050:CDS
CTCAATGCTCTAAAATAAGC+CGG 0.509900 4_1:-69652887 None:intergenic
AACAATGGTTCAACCCTCAC+TGG 0.512708 4_1:+69649226 Msa0568050:CDS
ATTCAAGAGCCTTCTTCCAA+TGG 0.522792 4_1:+69650163 Msa0568050:CDS
AGATATAGTAATATTGTTGT+GGG 0.526736 4_1:+69651362 Msa0568050:CDS
TGCAATAACACCACCAGTGA+GGG 0.527477 4_1:-69649239 None:intergenic
TTCACCAGGCCCATAGAGAA+TGG 0.529642 4_1:-69652038 None:intergenic
GCATTCACAACTGGTGTACC+TGG 0.532746 4_1:-69652617 None:intergenic
GTACACTTCAGAGATATTCA+TGG 0.535066 4_1:+69652214 Msa0568050:CDS
TGGAAAATAACCTGGGACAA+AGG 0.535610 4_1:-69651516 None:intergenic
TCAGAGTGGGGTCTTTCCAA+GGG 0.539646 4_1:+69650123 Msa0568050:CDS
GGACATTGTGTGGGGAGGAT+GGG 0.541581 4_1:+69650977 Msa0568050:CDS
AGAAGAGTGGTTACTTGTGT+TGG 0.543511 4_1:-69648819 None:intergenic
GAAACAATTAAGGCCATACA+TGG 0.543865 4_1:+69651064 Msa0568050:CDS
CAAGCATCAACTCTCAGAGT+GGG 0.544527 4_1:+69650110 Msa0568050:CDS
ACAGCAACGCCATTCTCTAT+GGG 0.545340 4_1:+69652029 Msa0568050:CDS
GGAGATTTCCTTAGAGCGGA+AGG 0.545632 4_1:-69651978 None:intergenic
GGGTATATCTTGGGCAACAA+AGG 0.546534 4_1:+69650049 Msa0568050:CDS
TGAGGGCTTCCATTGATGAA+AGG 0.547926 4_1:-69651488 None:intergenic
GAGATATAGTAATATTGTTG+TGG 0.549461 4_1:+69651361 Msa0568050:CDS
GAAAAGACACAATCAAATGT+TGG 0.550018 4_1:-69652859 None:intergenic
TGATGCCATGGGCAGAGCTA+GGG 0.550756 4_1:+69651022 Msa0568050:CDS
AACATTATGAGAGCTTGTGT+TGG 0.551621 4_1:+69652668 Msa0568050:CDS
ATGCTCTAAAATAAGCCGGC+AGG 0.557421 4_1:-69652883 None:intergenic
AACAACAAACAAAGGAGCAT+GGG 0.557437 4_1:-69652797 None:intergenic
GTTATTATTCTCAAGAAGAG+TGG 0.557745 4_1:-69648832 None:intergenic
TACAACAACCTTGTCAACCT+TGG 0.561169 4_1:-69651318 None:intergenic
ATTACTATATCTCTCAGTGT+TGG 0.568137 4_1:-69651351 None:intergenic
AACACAAGCCAAAGCATAGA+GGG 0.570612 4_1:-69651453 None:intergenic
GACCATATACCATTGGAAGA+AGG 0.571238 4_1:-69650172 None:intergenic
TAGTGCTAAGTTCAGCAAGA+AGG 0.571347 4_1:-69652313 None:intergenic
TTGCAGTATGTGCCTTATGT+GGG 0.573073 4_1:+69652167 Msa0568050:intron
GGGTCATAGATACCAGGAAG+TGG 0.573301 4_1:-69651098 None:intergenic
TAACAACAAACAAAGGAGCA+TGG 0.573914 4_1:-69652798 None:intergenic
AGTGAAGTGAAGTAACAGTT+CGG 0.574005 4_1:+69652726 Msa0568050:exon
CTTAGAGAGGTAACTGAGGA+TGG 0.576023 4_1:-69652482 None:intergenic
ACATGGTCTGGATGTTCACC+AGG 0.576442 4_1:-69652052 None:intergenic
GAACACAAGCCAAAGCATAG+AGG 0.576694 4_1:-69651454 None:intergenic
GGTTGTTTCGTAACTGTACA+CGG 0.578811 4_1:-69648968 None:intergenic
CTTGAACCTAGCTGATGCCA+TGG 0.584374 4_1:+69651010 Msa0568050:CDS
TGAGGATGGTTGCAACAGCA+TGG 0.587792 4_1:-69652468 None:intergenic
GGAAACTACCAAGGTTGACA+AGG 0.587852 4_1:+69651310 Msa0568050:CDS
CAGAGTGGGGTCTTTCCAAG+GGG 0.590292 4_1:+69650124 Msa0568050:CDS
AGACACAATCAAATGTTGGT+AGG 0.591202 4_1:-69652855 None:intergenic
CTCCCCACACAATGTCCTCA+GGG 0.593846 4_1:-69650971 None:intergenic
TACACTTCAGAGATATTCAT+GGG 0.596479 4_1:+69652215 Msa0568050:CDS
TTGTAACTCACTATTGATGT+TGG 0.596496 4_1:-69651911 None:intergenic
TGCAGTATGTGCCTTATGTG+GGG 0.598201 4_1:+69652168 Msa0568050:intron
CCAGTTCAAATCTGAACATG+AGG 0.602754 4_1:+69652340 Msa0568050:CDS
GATTAGCAGCAATGAAATCA+GGG 0.607120 4_1:-69651118 None:intergenic
AAATCAGGGTCATAGATACC+AGG 0.611731 4_1:-69651104 None:intergenic
TTGAACCTAGCTGATGCCAT+GGG 0.612923 4_1:+69651011 Msa0568050:CDS
AAACCCTGAGGACATTGTGT+GGG 0.613562 4_1:+69650968 Msa0568050:CDS
CTTTGATACCAGCTCCCACA+AGG 0.618754 4_1:-69651734 None:intergenic
AAACAAATGTCCCTAAATTG+GGG 0.618805 4_1:+69649070 Msa0568050:CDS
TCTTGGAGATTTCCTTAGAG+CGG 0.619855 4_1:-69651982 None:intergenic
AAATTATTACAGGTTCCACC+AGG 0.620232 4_1:+69652599 Msa0568050:intron
TGGAAGAAGGCTCTTGAATG+GGG 0.622421 4_1:-69650159 None:intergenic
AATATGCACAGCATCTCCAA+TGG 0.623432 4_1:+69652996 Msa0568050:three_prime_UTR
CGTGTTGGTTGATTTCCTTG+TGG 0.626639 4_1:+69651719 Msa0568050:CDS
TTACAAGTGGAGCCTTAGAG+AGG 0.632655 4_1:-69652495 None:intergenic
TCAAGCATCAACTCTCAGAG+TGG 0.642540 4_1:+69650109 Msa0568050:CDS
ACAGAAATAACACTTATGAG+TGG 0.643058 4_1:+69649007 Msa0568050:CDS
CACAAGGAAATCAACCAACA+CGG 0.643310 4_1:-69651718 None:intergenic
ATAAGTATAACAACAAACAA+AGG 0.645751 4_1:-69652805 None:intergenic
AACCCTGAGGACATTGTGTG+GGG 0.647259 4_1:+69650969 Msa0568050:CDS
CTACCTTAATAACAACAACA+TGG 0.647725 4_1:-69652069 None:intergenic
GGAGTTTAAGGAAACTACCA+AGG 0.653956 4_1:+69651301 Msa0568050:CDS
TAAACCCTGAGGACATTGTG+TGG 0.656587 4_1:+69650967 Msa0568050:CDS
AGTGGGGTCTTTCCAAGGGG+AGG 0.661000 4_1:+69650127 Msa0568050:CDS
AAACACCCTAGCTCTGCCCA+TGG 0.664245 4_1:-69651027 None:intergenic
GAGCCTTAGAGAGGTAACTG+AGG 0.664939 4_1:-69652486 None:intergenic
GGTGGAGATGACTTCAAGAG+TGG 0.665221 4_1:+69651678 Msa0568050:CDS
AATGGTTCAACCCTCACTGG+TGG 0.671303 4_1:+69649229 Msa0568050:CDS
AAGCATCAACTCTCAGAGTG+GGG 0.673610 4_1:+69650111 Msa0568050:CDS
TTGCAATAACACCACCAGTG+AGG 0.674489 4_1:-69649240 None:intergenic
GCAGTATGTGCCTTATGTGG+GGG 0.685589 4_1:+69652169 Msa0568050:intron
TTCACAACTGGTGTACCTGG+TGG 0.687619 4_1:-69652614 None:intergenic
ACTTCAGAGATATTCATGGG+TGG 0.695938 4_1:+69652218 Msa0568050:CDS
CCTGAGGACATTGTGTGGGG+AGG 0.704840 4_1:+69650972 Msa0568050:CDS
AACTCAACAGGTAAACCCTG+AGG 0.738510 4_1:+69650956 Msa0568050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAATAACAAAAATAA+TGG - chr4_1:69649292-69649311 None:intergenic 10.0%
!!! ATTATTATCAATAATTTTTG+TGG + chr4_1:69649320-69649339 Msa0568050:intron 10.0%
!!! AAATATTTTCCATTTTTAAA+AGG - chr4_1:69650600-69650619 None:intergenic 10.0%
!!! ATATGAATATATTTTTCTTT+TGG - chr4_1:69650674-69650693 None:intergenic 10.0%
!! CGAAATTAAAATTAATTAAA+GGG - chr4_1:69651547-69651566 None:intergenic 10.0%
!! ACGAAATTAAAATTAATTAA+AGG - chr4_1:69651548-69651567 None:intergenic 10.0%
!! TAATAATTGAATAAACAAAA+TGG - chr4_1:69652391-69652410 None:intergenic 10.0%
!!! ATTATTATTTGTGTTTTTAC+CGG - chr4_1:69649969-69649988 None:intergenic 15.0%
!! AAAACACAAATAATAATAGA+AGG + chr4_1:69649972-69649991 Msa0568050:intron 15.0%
!!! AATATTTGATATAGCAATTT+TGG + chr4_1:69649996-69650015 Msa0568050:intron 15.0%
!!! ATATTTGATATAGCAATTTT+GGG + chr4_1:69649997-69650016 Msa0568050:intron 15.0%
!!! TTCAAATATCCTTTTTAAAT+GGG - chr4_1:69650543-69650562 None:intergenic 15.0%
!!! TTTCAAATATCCTTTTTAAA+TGG - chr4_1:69650544-69650563 None:intergenic 15.0%
!!! GTAATTTCATTTTTTTTTAG+AGG + chr4_1:69650902-69650921 Msa0568050:intron 15.0%
!! TAAGTTATAAAATGATCATA+GGG - chr4_1:69651257-69651276 None:intergenic 15.0%
!!! TAATGTGTTTTATGAATTTA+AGG + chr4_1:69651279-69651298 Msa0568050:intron 15.0%
!!! AATGTGTTTTATGAATTTAA+GGG + chr4_1:69651280-69651299 Msa0568050:intron 15.0%
!!! ATACTCTTTTGTTAATTAAT+TGG + chr4_1:69652136-69652155 Msa0568050:intron 15.0%
!! ATATCTATTAATCTTCTATA+AGG + chr4_1:69652539-69652558 Msa0568050:intron 15.0%
!! TAATTGTTACAAATTATTAC+AGG + chr4_1:69652589-69652608 Msa0568050:intron 15.0%
!! ATTATTACATATGTTTAAGA+TGG - chr4_1:69652917-69652936 None:intergenic 15.0%
!!! TTTTTTATGTTGATATTGTC+AGG + chr4_1:69649179-69649198 Msa0568050:intron 20.0%
!!! TTTTTATGTTGATATTGTCA+GGG + chr4_1:69649180-69649199 Msa0568050:intron 20.0%
!!! ATCAATAATTTTTGTGGTTA+TGG + chr4_1:69649326-69649345 Msa0568050:intron 20.0%
!! AACAAAAATTTAAAGAGAGA+GGG + chr4_1:69649787-69649806 Msa0568050:intron 20.0%
!! AAATTAAAGTCACAAAGATA+TGG - chr4_1:69650026-69650045 None:intergenic 20.0%
!! TACTTTGAATTGTATTGAAA+AGG + chr4_1:69650276-69650295 Msa0568050:intron 20.0%
!! TTAACATTTCCCATTTAAAA+AGG + chr4_1:69650531-69650550 Msa0568050:intron 20.0%
!! GTAAGTTATAAAATGATCAT+AGG - chr4_1:69651258-69651277 None:intergenic 20.0%
!! AGATATAGTAATATTGTTGT+GGG + chr4_1:69651362-69651381 Msa0568050:CDS 20.0%
!! AAATTAATTAAAGGGCAATT+TGG - chr4_1:69651539-69651558 None:intergenic 20.0%
!! AAATCGCAACATATATTAAT+TGG - chr4_1:69651573-69651592 None:intergenic 20.0%
!!! AATCAAACTATTCCTTTTAA+TGG - chr4_1:69651658-69651677 None:intergenic 20.0%
!! ATTAAAAGGAATAGTTTGAT+TGG + chr4_1:69651657-69651676 Msa0568050:CDS 20.0%
!! AATTGATATTTGAATTGTGA+TGG + chr4_1:69651874-69651893 Msa0568050:intron 20.0%
!!! TTAAGGTAGTAACTTTTATT+CGG + chr4_1:69652083-69652102 Msa0568050:intron 20.0%
!! ATAAGTATAACAACAAACAA+AGG - chr4_1:69652808-69652827 None:intergenic 20.0%
!!! ATACTTATATTTTGATGTGT+TGG + chr4_1:69652820-69652839 Msa0568050:three_prime_UTR 20.0%
!! TAAAGATATAAACAATCCAT+TGG - chr4_1:69653015-69653034 None:intergenic 20.0%
! AATGTTTATCGAGAATTTCA+AGG + chr4_1:69648903-69648922 Msa0568050:exon 25.0%
!! AACTCATATTTGACTGTTTT+GGG - chr4_1:69649042-69649061 None:intergenic 25.0%
!! AAACTCATATTTGACTGTTT+TGG - chr4_1:69649043-69649062 None:intergenic 25.0%
! TTGAATATAGACTCAAAATG+AGG - chr4_1:69649113-69649132 None:intergenic 25.0%
! ATTAAGATGAAACTAACTCT+CGG - chr4_1:69649267-69649286 None:intergenic 25.0%
!!! TATCATTTTGTTTGTATACG+TGG - chr4_1:69649426-69649445 None:intergenic 25.0%
! TGTGTACAATTTATCTTGTA+TGG + chr4_1:69649762-69649781 Msa0568050:intron 25.0%
!! CTCTCTCTTTAAATTTTTGT+TGG - chr4_1:69649788-69649807 None:intergenic 25.0%
! CAACAAAAATTTAAAGAGAG+AGG + chr4_1:69649786-69649805 Msa0568050:intron 25.0%
! CATTGTAGAAAGAAAATGTT+TGG - chr4_1:69649843-69649862 None:intergenic 25.0%
! ATGAATGTGCTTATTTATTC+CGG + chr4_1:69649860-69649879 Msa0568050:intron 25.0%
!! ATCTTTGTGACTTTAATTTC+AGG + chr4_1:69650027-69650046 Msa0568050:intron 25.0%
!! TCTTTGTGACTTTAATTTCA+GGG + chr4_1:69650028-69650047 Msa0568050:intron 25.0%
! AATGACTTTCATGAAAGAAA+GGG - chr4_1:69650197-69650216 None:intergenic 25.0%
! AAATGACTTTCATGAAAGAA+AGG - chr4_1:69650198-69650217 None:intergenic 25.0%
! TCGCATAACCAATTTAAAAA+GGG + chr4_1:69650348-69650367 Msa0568050:intron 25.0%
!! TAACATGACCCTTTTTAAAT+TGG - chr4_1:69650359-69650378 None:intergenic 25.0%
!! TGACTTACAATTTCTTCTTT+TGG - chr4_1:69650413-69650432 None:intergenic 25.0%
! TTTAAATGGGAAATGTTAAC+CGG - chr4_1:69650530-69650549 None:intergenic 25.0%
! TTTCTCAAACAATAACTAAC+AGG - chr4_1:69650636-69650655 None:intergenic 25.0%
! TATGAATTTAAGGGAGTTTA+AGG + chr4_1:69651289-69651308 Msa0568050:intron 25.0%
! GAGATATAGTAATATTGTTG+TGG + chr4_1:69651361-69651380 Msa0568050:CDS 25.0%
!! ATTGAATTTTGCTTGTATGT+TGG + chr4_1:69651609-69651628 Msa0568050:intron 25.0%
GTTATTATTCTCAAGAAGAG+TGG - chr4_1:69648835-69648854 None:intergenic 30.0%
GAACAAATCACAAGAGAAAA+AGG - chr4_1:69648864-69648883 None:intergenic 30.0%
ACAGAAATAACACTTATGAG+TGG + chr4_1:69649007-69649026 Msa0568050:CDS 30.0%
ACAAACAAATGTCCCTAAAT+TGG + chr4_1:69649068-69649087 Msa0568050:CDS 30.0%
CAAACAAATGTCCCTAAATT+GGG + chr4_1:69649069-69649088 Msa0568050:CDS 30.0%
AAACAAATGTCCCTAAATTG+GGG + chr4_1:69649070-69649089 Msa0568050:CDS 30.0%
CATTATAGTACCCCAATTTA+GGG - chr4_1:69649083-69649102 None:intergenic 30.0%
ACATTATAGTACCCCAATTT+AGG - chr4_1:69649084-69649103 None:intergenic 30.0%
!!! CAACTTTTTTCTGAAGTGTT+GGG - chr4_1:69649685-69649704 None:intergenic 30.0%
!!! TTGTGTTTTTACCGGTTTTA+TGG - chr4_1:69649961-69649980 None:intergenic 30.0%
! CTTTGTGACTTTAATTTCAG+GGG + chr4_1:69650029-69650048 Msa0568050:intron 30.0%
! TTAATTTCAGGGGTATATCT+TGG + chr4_1:69650039-69650058 Msa0568050:intron 30.0%
! TAATTTCAGGGGTATATCTT+GGG + chr4_1:69650040-69650059 Msa0568050:intron 30.0%
! ATTCAGCAAGCCAATTATTT+TGG + chr4_1:69650077-69650096 Msa0568050:CDS 30.0%
AGTTAGCGAACCAAAATAAT+TGG - chr4_1:69650090-69650109 None:intergenic 30.0%
TTAAATTGGTTATGCGACAA+GGG - chr4_1:69650345-69650364 None:intergenic 30.0%
TTTAAATTGGTTATGCGACA+AGG - chr4_1:69650346-69650365 None:intergenic 30.0%
GTCGCATAACCAATTTAAAA+AGG + chr4_1:69650347-69650366 Msa0568050:intron 30.0%
!! GAGTTCAGTCCTTTTAAAAA+TGG + chr4_1:69650588-69650607 Msa0568050:intron 30.0%
TAGACCTACAGAAACAATTA+AGG + chr4_1:69651054-69651073 Msa0568050:CDS 30.0%
ATTACTATATCTCTCAGTGT+TGG - chr4_1:69651354-69651373 None:intergenic 30.0%
! TGACACTACTGAAAATCTTT+TGG + chr4_1:69651391-69651410 Msa0568050:CDS 30.0%
GAAAATGTTCCTTTCATCAA+TGG + chr4_1:69651479-69651498 Msa0568050:CDS 30.0%
AAAAGGAATAGTTTGATTGG+TGG + chr4_1:69651660-69651679 Msa0568050:CDS 30.0%
TTGTAACTCACTATTGATGT+TGG - chr4_1:69651914-69651933 None:intergenic 30.0%
AATAGTGAGTTACAACCATT+TGG + chr4_1:69651919-69651938 Msa0568050:CDS 30.0%
ATAGTGAGTTACAACCATTT+GGG + chr4_1:69651920-69651939 Msa0568050:CDS 30.0%
TTAATAACAACAACATGGTC+TGG - chr4_1:69652067-69652086 None:intergenic 30.0%
! AGACCATGTTGTTGTTATTA+AGG + chr4_1:69652066-69652085 Msa0568050:CDS 30.0%
CTACCTTAATAACAACAACA+TGG - chr4_1:69652072-69652091 None:intergenic 30.0%
! TATTCGGTCTTTCTTTTTGT+TGG + chr4_1:69652099-69652118 Msa0568050:intron 30.0%
TACACTTCAGAGATATTCAT+GGG + chr4_1:69652215-69652234 Msa0568050:CDS 30.0%
CTGTAAATAAAAACAGCAAC+GGG - chr4_1:69652431-69652450 None:intergenic 30.0%
CCTGTAAATAAAAACAGCAA+CGG - chr4_1:69652432-69652451 None:intergenic 30.0%
AAGTAACAGTTCGGTTATAT+AGG + chr4_1:69652735-69652754 Msa0568050:three_prime_UTR 30.0%
AGTTCGGTTATATAGGAATT+TGG + chr4_1:69652742-69652761 Msa0568050:three_prime_UTR 30.0%
GTTCGGTTATATAGGAATTT+GGG + chr4_1:69652743-69652762 Msa0568050:three_prime_UTR 30.0%
GAAAAGACACAATCAAATGT+TGG - chr4_1:69652862-69652881 None:intergenic 30.0%
!! TTGTCAATTCCATCTAGTTT+TGG + chr4_1:69652959-69652978 Msa0568050:three_prime_UTR 30.0%
TACAGAAAACCAAAACTAGA+TGG - chr4_1:69652971-69652990 None:intergenic 30.0%
!! TTTGAGATTGTTTTTCTCGA+CGG - chr4_1:69653087-69653106 None:intergenic 30.0%
TCTGTTCTCATGAACAAGTT+CGG - chr4_1:69648992-69649011 None:intergenic 35.0%
ATAGACTCAAAATGAGGAGA+AGG - chr4_1:69649107-69649126 None:intergenic 35.0%
!!! TTTTTTCTGAAGTGTTGGGT+TGG - chr4_1:69649681-69649700 None:intergenic 35.0%
!!! GCAACTTTTTTCTGAAGTGT+TGG - chr4_1:69649686-69649705 None:intergenic 35.0%
!! TGTTTGGTGCTTATAGAGAA+GGG - chr4_1:69649827-69649846 None:intergenic 35.0%
!! ATGTTTGGTGCTTATAGAGA+AGG - chr4_1:69649828-69649847 None:intergenic 35.0%
GTGTTTCACTTATTTAGCAC+CGG - chr4_1:69649882-69649901 None:intergenic 35.0%
! AGTAAACCTCCTTTTTCTGA+AGG + chr4_1:69650565-69650584 Msa0568050:intron 35.0%
! GTAAACCTCCTTTTTCTGAA+GGG + chr4_1:69650566-69650585 Msa0568050:intron 35.0%
ACACAACAACAAGTAAGATG+TGG + chr4_1:69650761-69650780 Msa0568050:intron 35.0%
!! ATGGCCTTAATTGTTTCTGT+AGG - chr4_1:69651061-69651080 None:intergenic 35.0%
GAAACAATTAAGGCCATACA+TGG + chr4_1:69651064-69651083 Msa0568050:CDS 35.0%
GATTAGCAGCAATGAAATCA+GGG - chr4_1:69651121-69651140 None:intergenic 35.0%
TGATTAGCAGCAATGAAATC+AGG - chr4_1:69651122-69651141 None:intergenic 35.0%
GATTTCATTGCTGCTAATCA+AGG + chr4_1:69651122-69651141 Msa0568050:CDS 35.0%
CGTGCTAACAACATCATTAA+AGG + chr4_1:69651149-69651168 Msa0568050:CDS 35.0%
!!! TGAAAATCTTTTGGCTTCTG+TGG + chr4_1:69651400-69651419 Msa0568050:CDS 35.0%
GGCAATTTGGAAAATAACCT+GGG - chr4_1:69651526-69651545 None:intergenic 35.0%
TGATTGATCTGGCCATTAAA+AGG + chr4_1:69651643-69651662 Msa0568050:CDS 35.0%
AACAAAAATGAAGTCCGTGT+TGG + chr4_1:69651704-69651723 Msa0568050:CDS 35.0%
AACCATTTGGGAAACAATGA+TGG + chr4_1:69651932-69651951 Msa0568050:CDS 35.0%
TTCCATCATTGTTTCCCAAA+TGG - chr4_1:69651937-69651956 None:intergenic 35.0%
ATCATCAACAACGTTACTCT+TGG - chr4_1:69652002-69652021 None:intergenic 35.0%
!! GAGTAACGTTGTTGATGATA+TGG + chr4_1:69652003-69652022 Msa0568050:CDS 35.0%
GTACACTTCAGAGATATTCA+TGG + chr4_1:69652214-69652233 Msa0568050:CDS 35.0%
! CACATGTGAAGATTCACTTT+TGG + chr4_1:69652265-69652284 Msa0568050:CDS 35.0%
!!! CCGTTGCTGTTTTTATTTAC+AGG + chr4_1:69652429-69652448 Msa0568050:intron 35.0%
AGCTACATTAGACTTACAAG+TGG - chr4_1:69652511-69652530 None:intergenic 35.0%
ACTTGTAAGTCTAATGTAGC+TGG + chr4_1:69652510-69652529 Msa0568050:intron 35.0%
AAATTATTACAGGTTCCACC+AGG + chr4_1:69652599-69652618 Msa0568050:intron 35.0%
TTTGACAATGCATTCACAAC+TGG - chr4_1:69652629-69652648 None:intergenic 35.0%
AACATTATGAGAGCTTGTGT+TGG + chr4_1:69652668-69652687 Msa0568050:CDS 35.0%
CTTCACTTCACTTGTATTCA+AGG - chr4_1:69652718-69652737 None:intergenic 35.0%
AGTGAAGTGAAGTAACAGTT+CGG + chr4_1:69652726-69652745 Msa0568050:exon 35.0%
! AACAACAAACAAAGGAGCAT+GGG - chr4_1:69652800-69652819 None:intergenic 35.0%
TAACAACAAACAAAGGAGCA+TGG - chr4_1:69652801-69652820 None:intergenic 35.0%
AGACACAATCAAATGTTGGT+AGG - chr4_1:69652858-69652877 None:intergenic 35.0%
!! CTCAATGCTCTAAAATAAGC+CGG - chr4_1:69652890-69652909 None:intergenic 35.0%
!!! CTTATTTTAGAGCATTGAGC+AGG + chr4_1:69652891-69652910 Msa0568050:three_prime_UTR 35.0%
!! TTGAGATTGTTTTTCTCGAC+GGG - chr4_1:69653086-69653105 None:intergenic 35.0%
AGAAGAGTGGTTACTTGTGT+TGG - chr4_1:69648822-69648841 None:intergenic 40.0%
! GGTTGTTTCGTAACTGTACA+CGG - chr4_1:69648971-69648990 None:intergenic 40.0%
ATTGTCAGGGTAATGCTTGT+TGG + chr4_1:69649193-69649212 Msa0568050:intron 40.0%
TTGTCAGGGTAATGCTTGTT+GGG + chr4_1:69649194-69649213 Msa0568050:intron 40.0%
! TACAACAGAGCACTCCATTT+CGG + chr4_1:69649581-69649600 Msa0568050:intron 40.0%
ATCCACTTAAACACCCGAAA+TGG - chr4_1:69649598-69649617 None:intergenic 40.0%
TCACTTGTGCACCATAAAAC+CGG + chr4_1:69649947-69649966 Msa0568050:intron 40.0%
TTGGAAGAAGGCTCTTGAAT+GGG - chr4_1:69650163-69650182 None:intergenic 40.0%
ATTGGAAGAAGGCTCTTGAA+TGG - chr4_1:69650164-69650183 None:intergenic 40.0%
ATTCAAGAGCCTTCTTCCAA+TGG + chr4_1:69650163-69650182 Msa0568050:CDS 40.0%
AGCCTTCTTCCAATGGTATA+TGG + chr4_1:69650170-69650189 Msa0568050:intron 40.0%
GACCATATACCATTGGAAGA+AGG - chr4_1:69650175-69650194 None:intergenic 40.0%
AGAAAGGGACCATATACCAT+TGG - chr4_1:69650182-69650201 None:intergenic 40.0%
TGCTTCCTTAATCAATGTCC+CGG + chr4_1:69650499-69650518 Msa0568050:intron 40.0%
ACTGAACTCCCTTCAGAAAA+AGG - chr4_1:69650577-69650596 None:intergenic 40.0%
AGCATGTCTTTCAACTCAAC+AGG + chr4_1:69650944-69650963 Msa0568050:intron 40.0%
AAGGCCATACATGGAATCTA+TGG + chr4_1:69651073-69651092 Msa0568050:CDS 40.0%
GGAACCATAGATTCCATGTA+TGG - chr4_1:69651080-69651099 None:intergenic 40.0%
AAATCAGGGTCATAGATACC+AGG - chr4_1:69651107-69651126 None:intergenic 40.0%
GGAGTTTAAGGAAACTACCA+AGG + chr4_1:69651301-69651320 Msa0568050:CDS 40.0%
TACAACAACCTTGTCAACCT+TGG - chr4_1:69651321-69651340 None:intergenic 40.0%
TTGACAAGGTTGTTGTACTC+TGG + chr4_1:69651324-69651343 Msa0568050:CDS 40.0%
AACACAAGCCAAAGCATAGA+GGG - chr4_1:69651456-69651475 None:intergenic 40.0%
TGGAAAATAACCTGGGACAA+AGG - chr4_1:69651519-69651538 None:intergenic 40.0%
GGGCAATTTGGAAAATAACC+TGG - chr4_1:69651527-69651546 None:intergenic 40.0%
!! TGCTTGTATGTTGGTTCATC+AGG + chr4_1:69651618-69651637 Msa0568050:intron 40.0%
!! GCTTGTATGTTGGTTCATCA+GGG + chr4_1:69651619-69651638 Msa0568050:intron 40.0%
! TTCATCAGGGTTGATTGATC+TGG + chr4_1:69651632-69651651 Msa0568050:intron 40.0%
CACAAGGAAATCAACCAACA+CGG - chr4_1:69651721-69651740 None:intergenic 40.0%
!! GTGTTGGTTGATTTCCTTGT+GGG + chr4_1:69651720-69651739 Msa0568050:CDS 40.0%
TCTTGGAGATTTCCTTAGAG+CGG - chr4_1:69651985-69652004 None:intergenic 40.0%
TTTGCAGTATGTGCCTTATG+TGG + chr4_1:69652166-69652185 Msa0568050:intron 40.0%
TTGCAGTATGTGCCTTATGT+GGG + chr4_1:69652167-69652186 Msa0568050:intron 40.0%
ACTTCAGAGATATTCATGGG+TGG + chr4_1:69652218-69652237 Msa0568050:CDS 40.0%
TTTGGCTGCTCCAATTATCT+TGG + chr4_1:69652283-69652302 Msa0568050:CDS 40.0%
TGCTCCAATTATCTTGGACT+TGG + chr4_1:69652289-69652308 Msa0568050:CDS 40.0%
AGGACCAAGTCCAAGATAAT+TGG - chr4_1:69652296-69652315 None:intergenic 40.0%
TAGTGCTAAGTTCAGCAAGA+AGG - chr4_1:69652316-69652335 None:intergenic 40.0%
CCTCATGTTCAGATTTGAAC+TGG - chr4_1:69652343-69652362 None:intergenic 40.0%
CCAGTTCAAATCTGAACATG+AGG + chr4_1:69652340-69652359 Msa0568050:CDS 40.0%
TATGAGAGCTTGTGTTGGAT+TGG + chr4_1:69652673-69652692 Msa0568050:CDS 40.0%
TCAAGGATCATGTTGTTCTC+AGG - chr4_1:69652701-69652720 None:intergenic 40.0%
!! AGGAGCATGGGATAAGTTTT+AGG - chr4_1:69652788-69652807 None:intergenic 40.0%
AATATGCACAGCATCTCCAA+TGG + chr4_1:69652996-69653015 Msa0568050:three_prime_UTR 40.0%
GTCTCTGTGTACTTCACGTT+AGG - chr4_1:69648937-69648956 None:intergenic 45.0%
AACAATGGTTCAACCCTCAC+TGG + chr4_1:69649226-69649245 Msa0568050:CDS 45.0%
TGCAATAACACCACCAGTGA+GGG - chr4_1:69649242-69649261 None:intergenic 45.0%
TTGCAATAACACCACCAGTG+AGG - chr4_1:69649243-69649262 None:intergenic 45.0%
! ATGGAGTGCTCTGTTGTAGA+TGG - chr4_1:69649579-69649598 None:intergenic 45.0%
! ACAACAGAGCACTCCATTTC+GGG + chr4_1:69649582-69649601 Msa0568050:intron 45.0%
! CTCCATTTCGGGTGTTTAAG+TGG + chr4_1:69649593-69649612 Msa0568050:intron 45.0%
! TTGGTGCTTATAGAGAAGGG+TGG - chr4_1:69649824-69649843 None:intergenic 45.0%
GGGTATATCTTGGGCAACAA+AGG + chr4_1:69650049-69650068 Msa0568050:CDS 45.0%
TCAAGCATCAACTCTCAGAG+TGG + chr4_1:69650109-69650128 Msa0568050:CDS 45.0%
CAAGCATCAACTCTCAGAGT+GGG + chr4_1:69650110-69650129 Msa0568050:CDS 45.0%
AAGCATCAACTCTCAGAGTG+GGG + chr4_1:69650111-69650130 Msa0568050:CDS 45.0%
TGGAAGAAGGCTCTTGAATG+GGG - chr4_1:69650162-69650181 None:intergenic 45.0%
GCTTCCTTAATCAATGTCCC+GGG + chr4_1:69650500-69650519 Msa0568050:intron 45.0%
CTTCCTTAATCAATGTCCCG+GGG + chr4_1:69650501-69650520 Msa0568050:intron 45.0%
TTCCTTAATCAATGTCCCGG+GGG + chr4_1:69650502-69650521 Msa0568050:intron 45.0%
GAACTCCCTTCAGAAAAAGG+AGG - chr4_1:69650574-69650593 None:intergenic 45.0%
AACTCAACAGGTAAACCCTG+AGG + chr4_1:69650956-69650975 Msa0568050:intron 45.0%
TAAACCCTGAGGACATTGTG+TGG + chr4_1:69650967-69650986 Msa0568050:CDS 45.0%
AAACCCTGAGGACATTGTGT+GGG + chr4_1:69650968-69650987 Msa0568050:CDS 45.0%
TTGAACCTAGCTGATGCCAT+GGG + chr4_1:69651011-69651030 Msa0568050:CDS 45.0%
GAATCTATGGTTCCACTTCC+TGG + chr4_1:69651086-69651105 Msa0568050:CDS 45.0%
GGAAACTACCAAGGTTGACA+AGG + chr4_1:69651310-69651329 Msa0568050:CDS 45.0%
ACCTTCAACCCTCTATGCTT+TGG + chr4_1:69651445-69651464 Msa0568050:CDS 45.0%
GAACACAAGCCAAAGCATAG+AGG - chr4_1:69651457-69651476 None:intergenic 45.0%
TGAGGGCTTCCATTGATGAA+AGG - chr4_1:69651491-69651510 None:intergenic 45.0%
!!! CTGGGACAAAGGTGTTTTGA+GGG - chr4_1:69651508-69651527 None:intergenic 45.0%
!! CGTGTTGGTTGATTTCCTTG+TGG + chr4_1:69651719-69651738 Msa0568050:CDS 45.0%
AACAGCAACGCCATTCTCTA+TGG + chr4_1:69652028-69652047 Msa0568050:CDS 45.0%
ACAGCAACGCCATTCTCTAT+GGG + chr4_1:69652029-69652048 Msa0568050:CDS 45.0%
TGCAGTATGTGCCTTATGTG+GGG + chr4_1:69652168-69652187 Msa0568050:intron 45.0%
CTTAGAGAGGTAACTGAGGA+TGG - chr4_1:69652485-69652504 None:intergenic 45.0%
CATCCTCAGTTACCTCTCTA+AGG + chr4_1:69652483-69652502 Msa0568050:CDS 45.0%
TTACAAGTGGAGCCTTAGAG+AGG - chr4_1:69652498-69652517 None:intergenic 45.0%
! GATTGTGTCTTTTCTCCTGC+CGG + chr4_1:69652868-69652887 Msa0568050:three_prime_UTR 45.0%
!! ATGCTCTAAAATAAGCCGGC+AGG - chr4_1:69652886-69652905 None:intergenic 45.0%
! TCAGGGTAATGCTTGTTGGG+TGG + chr4_1:69649197-69649216 Msa0568050:intron 50.0%
! CAGGGTAATGCTTGTTGGGT+GGG + chr4_1:69649198-69649217 Msa0568050:intron 50.0%
! AGGGTAATGCTTGTTGGGTG+GGG + chr4_1:69649199-69649218 Msa0568050:intron 50.0%
AATGGTTCAACCCTCACTGG+TGG + chr4_1:69649229-69649248 Msa0568050:CDS 50.0%
TCAGAGTGGGGTCTTTCCAA+GGG + chr4_1:69650123-69650142 Msa0568050:CDS 50.0%
AACCCTGAGGACATTGTGTG+GGG + chr4_1:69650969-69650988 Msa0568050:CDS 50.0%
CTTGAACCTAGCTGATGCCA+TGG + chr4_1:69651010-69651029 Msa0568050:CDS 50.0%
GGGTCATAGATACCAGGAAG+TGG - chr4_1:69651101-69651120 None:intergenic 50.0%
GCCAAAGCATAGAGGGTTGA+AGG - chr4_1:69651449-69651468 None:intergenic 50.0%
!!! CCTGGGACAAAGGTGTTTTG+AGG - chr4_1:69651509-69651528 None:intergenic 50.0%
CCTCAAAACACCTTTGTCCC+AGG + chr4_1:69651506-69651525 Msa0568050:CDS 50.0%
GGTGGAGATGACTTCAAGAG+TGG + chr4_1:69651678-69651697 Msa0568050:CDS 50.0%
! GTTGATTTCCTTGTGGGAGC+TGG + chr4_1:69651726-69651745 Msa0568050:CDS 50.0%
CTTTGATACCAGCTCCCACA+AGG - chr4_1:69651737-69651756 None:intergenic 50.0%
ACCACAAACCTTCCGCTCTA+AGG + chr4_1:69651970-69651989 Msa0568050:CDS 50.0%
TCCTTAGAGCGGAAGGTTTG+TGG - chr4_1:69651974-69651993 None:intergenic 50.0%
GGAGATTTCCTTAGAGCGGA+AGG - chr4_1:69651981-69652000 None:intergenic 50.0%
TTCACCAGGCCCATAGAGAA+TGG - chr4_1:69652041-69652060 None:intergenic 50.0%
ACATGGTCTGGATGTTCACC+AGG - chr4_1:69652055-69652074 None:intergenic 50.0%
GCAGTATGTGCCTTATGTGG+GGG + chr4_1:69652169-69652188 Msa0568050:intron 50.0%
TGAGGATGGTTGCAACAGCA+TGG - chr4_1:69652471-69652490 None:intergenic 50.0%
GAGCCTTAGAGAGGTAACTG+AGG - chr4_1:69652489-69652508 None:intergenic 50.0%
TTCACAACTGGTGTACCTGG+TGG - chr4_1:69652617-69652636 None:intergenic 50.0%
GCATTCACAACTGGTGTACC+TGG - chr4_1:69652620-69652639 None:intergenic 50.0%
GTCAAAGCAGAGAGCTATGC+TGG + chr4_1:69652643-69652662 Msa0568050:CDS 50.0%
! GTAATGCTTGTTGGGTGGGG+TGG + chr4_1:69649202-69649221 Msa0568050:CDS 55.0%
GTTGGGTGGGGTGGAAACAA+TGG + chr4_1:69649211-69649230 Msa0568050:CDS 55.0%
CTCAGAGTGGGGTCTTTCCA+AGG + chr4_1:69650122-69650141 Msa0568050:CDS 55.0%
CAGAGTGGGGTCTTTCCAAG+GGG + chr4_1:69650124-69650143 Msa0568050:CDS 55.0%
GGGCATGTATTTCCTCCCCT+TGG - chr4_1:69650142-69650161 None:intergenic 55.0%
GGTCATGTTAACCAGTGCCC+CGG + chr4_1:69650369-69650388 Msa0568050:intron 55.0%
GTCATGTTAACCAGTGCCCC+GGG + chr4_1:69650370-69650389 Msa0568050:intron 55.0%
TCATGTTAACCAGTGCCCCG+GGG + chr4_1:69650371-69650390 Msa0568050:intron 55.0%
! TGCCCCCGGGACATTGATTA+AGG - chr4_1:69650507-69650526 None:intergenic 55.0%
AAATGTTAACCGGTGCCCCC+GGG - chr4_1:69650520-69650539 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG - chr4_1:69650521-69650540 None:intergenic 55.0%
CTCCCCACACAATGTCCTCA+GGG - chr4_1:69650974-69650993 None:intergenic 55.0%
AGGACATTGTGTGGGGAGGA+TGG + chr4_1:69650976-69650995 Msa0568050:CDS 55.0%
GGACATTGTGTGGGGAGGAT+GGG + chr4_1:69650977-69650996 Msa0568050:CDS 55.0%
TGATGCCATGGGCAGAGCTA+GGG + chr4_1:69651022-69651041 Msa0568050:CDS 55.0%
!! AAACACCCTAGCTCTGCCCA+TGG - chr4_1:69651030-69651049 None:intergenic 55.0%
AACGCCATTCTCTATGGGCC+TGG + chr4_1:69652034-69652053 Msa0568050:CDS 55.0%
! CTCTTGCTGTCCCCCACATA+AGG - chr4_1:69652182-69652201 None:intergenic 55.0%
AGTGGGGTCTTTCCAAGGGG+AGG + chr4_1:69650127-69650146 Msa0568050:CDS 60.0%
CATGTTAACCAGTGCCCCGG+GGG + chr4_1:69650372-69650391 Msa0568050:intron 60.0%
TTCCTTAACCAGTGCCCCCG+GGG - chr4_1:69650389-69650408 None:intergenic 60.0%
CTTCCTTAACCAGTGCCCCC+GGG - chr4_1:69650390-69650409 None:intergenic 60.0%
GCTTCCTTAACCAGTGCCCC+CGG - chr4_1:69650391-69650410 None:intergenic 60.0%
! AATCAATGTCCCGGGGGCAC+CGG + chr4_1:69650508-69650527 Msa0568050:intron 60.0%
CCTCCCCACACAATGTCCTC+AGG - chr4_1:69650975-69650994 None:intergenic 60.0%
CCTGAGGACATTGTGTGGGG+AGG + chr4_1:69650972-69650991 Msa0568050:CDS 60.0%
CTCTGCCCATGGCATCAGCT+AGG - chr4_1:69651019-69651038 None:intergenic 60.0%
CTGATGCCATGGGCAGAGCT+AGG + chr4_1:69651021-69651040 Msa0568050:CDS 60.0%
GGGGGACAGCAAGAGAGCAA+TGG + chr4_1:69652187-69652206 Msa0568050:CDS 60.0%
!! TGCCCCGGGGGCACTGGTTA+AGG + chr4_1:69650384-69650403 Msa0568050:intron 70.0%
! AACCAGTGCCCCGGGGGCAC+TGG + chr4_1:69650378-69650397 Msa0568050:intron 75.0%
AACCAGTGCCCCCGGGGCAC+TGG - chr4_1:69650383-69650402 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69648816 69653108 69648816 ID=Msa0568050;Name=Msa0568050
chr4_1 mRNA 69648816 69653108 69648816 ID=Msa0568050-mRNA-1;Parent=Msa0568050;Name=Msa0568050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=88|1|1|1|1|1|10|378|510
chr4_1 exon 69648816 69649091 69648816 ID=Msa0568050-mRNA-1:exon:23224;Parent=Msa0568050-mRNA-1
chr4_1 exon 69649201 69649269 69649201 ID=Msa0568050-mRNA-1:exon:23225;Parent=Msa0568050-mRNA-1
chr4_1 exon 69650049 69650184 69650049 ID=Msa0568050-mRNA-1:exon:23226;Parent=Msa0568050-mRNA-1
chr4_1 exon 69650966 69651213 69650966 ID=Msa0568050-mRNA-1:exon:23227;Parent=Msa0568050-mRNA-1
chr4_1 exon 69651301 69651527 69651301 ID=Msa0568050-mRNA-1:exon:23228;Parent=Msa0568050-mRNA-1
chr4_1 exon 69651640 69651755 69651640 ID=Msa0568050-mRNA-1:exon:23229;Parent=Msa0568050-mRNA-1
chr4_1 exon 69651911 69652087 69651911 ID=Msa0568050-mRNA-1:exon:23230;Parent=Msa0568050-mRNA-1
chr4_1 exon 69652173 69652361 69652173 ID=Msa0568050-mRNA-1:exon:23231;Parent=Msa0568050-mRNA-1
chr4_1 exon 69652451 69652513 69652451 ID=Msa0568050-mRNA-1:exon:23232;Parent=Msa0568050-mRNA-1
chr4_1 exon 69652611 69653108 69652611 ID=Msa0568050-mRNA-1:exon:23233;Parent=Msa0568050-mRNA-1
chr4_1 five_prime_UTR 69648816 69648903 69648816 ID=Msa0568050-mRNA-1:five_prime_utr;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69648904 69649091 69648904 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69649201 69649269 69649201 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69650049 69650184 69650049 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69650966 69651213 69650966 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69651301 69651527 69651301 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69651640 69651755 69651640 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69651911 69652087 69651911 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69652173 69652361 69652173 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69652451 69652513 69652451 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 CDS 69652611 69652730 69652611 ID=Msa0568050-mRNA-1:cds;Parent=Msa0568050-mRNA-1
chr4_1 three_prime_UTR 69652731 69653108 69652731 ID=Msa0568050-mRNA-1:three_prime_utr;Parent=Msa0568050-mRNA-1
Gene Sequence

>Msa0568050

ATGTTTATCGAGAATTTCAAGGTCGAAAGTCCTAACGTGAAGTACACAGAGACTGAGATTCAGTCCGTGTACAGTTACGAAACAACCGAACTTGTTCATGAGAACAGAAATAACACTTATGAGTGGATTGTTAAGCCCAAAACAGTCAAATATGAGTTTAAAACACAAACAAATGTCCCTAAATTGGGGGTAATGCTTGTTGGGTGGGGTGGAAACAATGGTTCAACCCTCACTGGTGGTGTTATTGCAAACCGAGAGGGTATATCTTGGGCAACAAAGGACAAGATTCAGCAAGCCAATTATTTTGGTTCGCTAACTCAAGCATCAACTCTCAGAGTGGGGTCTTTCCAAGGGGAGGAAATACATGCCCCATTCAAGAGCCTTCTTCCAATGGTAAACCCTGAGGACATTGTGTGGGGAGGATGGGATATCAGTAACTTGAACCTAGCTGATGCCATGGGCAGAGCTAGGGTGTTTGACATAGACCTACAGAAACAATTAAGGCCATACATGGAATCTATGGTTCCACTTCCTGGTATCTATGACCCTGATTTCATTGCTGCTAATCAAGGAGATCGTGCTAACAACATCATTAAAGGAACAAAAAAAGAGCAACTTCAGCAAGTCATCAAAGACATTAAGGAGTTTAAGGAAACTACCAAGGTTGACAAGGTTGTTGTACTCTGGACTGCCAACACTGAGAGATATAGTAATATTGTTGTGGGACTAAATGACACTACTGAAAATCTTTTGGCTTCTGTGGACAAGAATGAAGCTGAGATTTCACCTTCAACCCTCTATGCTTTGGCTTGTGTTCTTGAAAATGTTCCTTTCATCAATGGAAGCCCTCAAAACACCTTTGTCCCAGGGTTGATTGATCTGGCCATTAAAAGGAATAGTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAAACAAAAATGAAGTCCGTGTTGGTTGATTTCCTTGTGGGAGCTGGTATCAAACCAACATCAATAGTGAGTTACAACCATTTGGGAAACAATGATGGAATGAATCTTTCTGCACCACAAACCTTCCGCTCTAAGGAAATCTCCAAGAGTAACGTTGTTGATGATATGGTCAACAGCAACGCCATTCTCTATGGGCCTGGTGAACATCCAGACCATGTTGTTGTTATTAAGTATGTGCCTTATGTGGGGGACAGCAAGAGAGCAATGGATGAGTACACTTCAGAGATATTCATGGGTGGAAAGAACACAATTGTGATGCACAACACATGTGAAGATTCACTTTTGGCTGCTCCAATTATCTTGGACTTGGTCCTTCTTGCTGAACTTAGCACTAGAATCCAGTTCAAATCTGAACATGAGGACAAGTTTCATTCATTCCATGCTGTTGCAACCATCCTCAGTTACCTCTCTAAGGCTCCACTTGTTCCACCAGGTACACCAGTTGTGAATGCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATTATGAGAGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATCCTTGAATACAAGTGA

Protein sequence

>Msa0568050

MFIENFKVESPNVKYTETEIQSVYSYETTELVHENRNNTYEWIVKPKTVKYEFKTQTNVPKLGVMLVGWGGNNGSTLTGGVIANREGISWATKDKIQQANYFGSLTQASTLRVGSFQGEEIHAPFKSLLPMVNPEDIVWGGWDISNLNLADAMGRARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGDRANNIIKGTKKEQLQQVIKDIKEFKETTKVDKVVVLWTANTERYSNIVVGLNDTTENLLASVDKNEAEISPSTLYALACVLENVPFINGSPQNTFVPGLIDLAIKRNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVNSNAILYGPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQFKSEHEDKFHSFHAVATILSYLSKAPLVPPGTPVVNALSKQRAMLENIMRACVGLAPENNMILEYK*