AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691740 MtrunA17_Chr4g0041461 93.294 343 8 2 4 333 1 341 0.0 662
Msa0691740 MtrunA17_Chr2g0319981 70.882 340 81 4 4 330 1 335 2.18e-162 456
Msa0691740 MtrunA17_Chr1g0164721 35.789 190 106 5 77 254 68 253 1.21e-27 112
Msa0691740 MtrunA17_Chr5g0393371 38.333 120 70 3 73 189 2 120 8.04e-15 74.7
Msa0691740 MtrunA17_Chr7g0272881 30.247 162 101 5 79 234 51 206 1.36e-14 72.4
Msa0691740 MtrunA17_Chr1g0159511 44.000 75 42 0 73 147 2 76 6.58e-14 72.0
Msa0691740 MtrunA17_Chr1g0159491 45.205 73 40 0 77 149 6 78 8.64e-14 65.9
Msa0691740 MtrunA17_Chr8g0352451 36.283 113 67 3 78 188 73 182 1.39e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691740 AT2G42750.1 65.889 343 97 6 4 329 1 340 5.56e-148 421
Msa0691740 AT5G23240.1 38.144 194 106 6 68 252 41 229 5.54e-32 124
Msa0691740 AT1G76700.1 35.537 121 74 3 77 194 6 125 1.81e-12 68.2
Msa0691740 AT1G21080.1 44.156 77 41 1 77 151 6 82 1.87e-12 68.2
Msa0691740 AT1G21080.3 44.156 77 41 1 77 151 6 82 2.06e-12 67.8
Msa0691740 AT1G77020.1 44.118 68 38 0 78 145 7 74 9.42e-12 65.9
Msa0691740 AT3G05345.1 27.607 163 107 5 71 229 38 193 3.29e-11 63.2
Msa0691740 AT5G48030.1 41.791 67 39 0 75 141 92 158 3.95e-11 64.3

Find 97 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATCCATAATTGTAATT+TGG 0.087736 4_4:-60016485 Msa0691740:three_prime_UTR
ACTATAATTGATGACTTTAA+TGG 0.168393 4_4:-60021026 Msa0691740:exon
CAGGTTGCTCTAATGCTTTC+AGG 0.193170 4_4:-60018084 Msa0691740:CDS
TGAAGACTATTATGCAGTTT+TGG 0.211869 4_4:-60020792 Msa0691740:CDS
ATTTACCCAAATTACAATTA+TGG 0.216983 4_4:+60016479 None:intergenic
GATATGTTATAGGGAAAATA+AGG 0.221730 4_4:+60016578 None:intergenic
TATTTCTACCAAGGATTTAA+AGG 0.231420 4_4:-60016238 Msa0691740:three_prime_UTR
ACAATCCATAATTGTAATTT+GGG 0.267467 4_4:-60016484 Msa0691740:three_prime_UTR
ATAGCCGTTTGAATTAATTC+AGG 0.289083 4_4:+60018819 None:intergenic
ATTCAATGACATGCTATATA+TGG 0.294688 4_4:+60016529 None:intergenic
CTGCAGCTGCTGCTAGAAAA+TGG 0.315567 4_4:-60016686 Msa0691740:CDS
GACATCAATCAATCCTTTCA+TGG 0.320575 4_4:-60019864 Msa0691740:CDS
GTTCTGTTCTACATAGAAAT+AGG 0.321257 4_4:+60021070 None:intergenic
AGTTGCAAACGAAGAGGTTT+TGG 0.340245 4_4:-60020872 Msa0691740:CDS
GGACAGAGAGGATATGTTAT+AGG 0.342543 4_4:+60016568 None:intergenic
ATGATAAAACAAATTCATAC+TGG 0.346560 4_4:-60016979 Msa0691740:CDS
GCCAGAGTATACAATCAGTT+TGG 0.347992 4_4:-60018846 Msa0691740:CDS
TTACATTGACTCTTTCTATA+CGG 0.355741 4_4:+60018415 None:intergenic
ATCTGCTCCGGTGTTGCATC+TGG 0.358971 4_4:+60020127 None:intergenic
ACCAAGGATTTAAAGGGATA+AGG 0.362826 4_4:-60016231 Msa0691740:three_prime_UTR
GTCCAATGAATGCAGTCAAC+AGG 0.364201 4_4:+60018477 None:intergenic
TCCTTATCCCTTTAAATCCT+TGG 0.370385 4_4:+60016230 None:intergenic
TCATAAACCCTGCGCTGAAC+TGG 0.373813 4_4:+60019908 None:intergenic
TCAGGAATGGGATCAGCATT+AGG 0.391033 4_4:-60018066 Msa0691740:CDS
CCAAGAGACTACGAAAATTC+AGG 0.392251 4_4:-60016938 Msa0691740:intron
GGATCGTTGCCACTCAAATC+CGG 0.392784 4_4:+60020067 None:intergenic
GCCCTGTTGACTGCATTCAT+TGG 0.406145 4_4:-60018479 Msa0691740:CDS
GCTCTAATGCTTTCAGGAAT+GGG 0.406320 4_4:-60018078 Msa0691740:CDS
AGGGTTTATGATGATATTCA+TGG 0.407166 4_4:-60019896 Msa0691740:CDS
ATTTCTACCAAGGATTTAAA+GGG 0.410927 4_4:-60016237 Msa0691740:three_prime_UTR
GACAGAGAGGATATGTTATA+GGG 0.412780 4_4:+60016569 None:intergenic
AATGTTGCCTGTGATGTGTT+TGG 0.418176 4_4:-60018891 Msa0691740:CDS
GGTGCAGAAATTTGTGGTCT+CGG 0.423746 4_4:+60020045 None:intergenic
AAACCTCTTCGTTTGCAACT+TGG 0.425366 4_4:+60020875 None:intergenic
TCTGGAAGTTTGACTGTGGA+AGG 0.433523 4_4:+60016630 None:intergenic
TTTAGAGCTTCTGTGTATAG+TGG 0.435652 4_4:+60020989 None:intergenic
TTCAAACGGCTATTGAAAGT+TGG 0.439837 4_4:-60018809 Msa0691740:intron
TGCTCTAATGCTTTCAGGAA+TGG 0.444362 4_4:-60018079 Msa0691740:CDS
TCGACGAAAACATGATCCTT+TGG 0.446413 4_4:+60019830 None:intergenic
CCAGAGTATACAATCAGTTT+GGG 0.448971 4_4:-60018845 Msa0691740:CDS
TTTGGAATTGAAGAAGACTT+TGG 0.450046 4_4:-60018873 Msa0691740:CDS
TTGGTGGAAGAGGTTTCCTC+TGG 0.451754 4_4:+60016612 None:intergenic
AGTAAAAGTTGCTACTGATC+AGG 0.453197 4_4:-60020846 Msa0691740:CDS
ACAAATTCAGTGATGGGTTG+TGG 0.454596 4_4:+60020963 None:intergenic
AGAAAATTATTATCAGCTAA+AGG 0.461089 4_4:-60016319 Msa0691740:three_prime_UTR
TCATTAGTCCTTGGTGGAAG+AGG 0.480200 4_4:+60016602 None:intergenic
AATGAAGGTGCAGAAATTTG+TGG 0.484237 4_4:+60020039 None:intergenic
AATGACAAAGTTACACATCA+AGG 0.493127 4_4:+60016383 None:intergenic
CTCATAGACTTCATTAATGA+AGG 0.495012 4_4:+60020024 None:intergenic
GTGCAGAAATTTGTGGTCTC+GGG 0.497638 4_4:+60020046 None:intergenic
TAGCCGTTTGAATTAATTCA+GGG 0.500760 4_4:+60018820 None:intergenic
TTCAGCTCCAACACTGTCAC+TGG 0.500793 4_4:+60020811 None:intergenic
GATCGTTGCCACTCAAATCC+GGG 0.515416 4_4:+60020068 None:intergenic
TCAGTGATCCAGTTCAGCGC+AGG 0.523230 4_4:-60019916 Msa0691740:CDS
TATGGATGAATTAATTACAT+TGG 0.523638 4_4:+60016547 None:intergenic
TATGCCTTCTTGATCTGCTC+CGG 0.526633 4_4:+60020115 None:intergenic
GATTTATAGCAGTATATACA+AGG 0.538744 4_4:-60016441 Msa0691740:three_prime_UTR
CTTGGTGTTGCAAATCTCCA+TGG 0.539226 4_4:+60020893 None:intergenic
TAAGGGTCATTAGTCCTTGG+TGG 0.541327 4_4:+60016596 None:intergenic
TACGACACAAATTCAGTGAT+GGG 0.541733 4_4:+60020957 None:intergenic
GAACCCTGAATTAATTCAAA+CGG 0.544125 4_4:-60018823 Msa0691740:CDS
CTTCATTAATGAAGTCTATG+AGG 0.547350 4_4:-60020023 Msa0691740:intron
GGACTAGAATCGTCCATGAA+AGG 0.550811 4_4:+60019851 None:intergenic
AAATAAGGGTCATTAGTCCT+TGG 0.551053 4_4:+60016593 None:intergenic
ATATGTTATAGGGAAAATAA+GGG 0.553915 4_4:+60016579 None:intergenic
TTCAATTCCAAACACATCAC+AGG 0.555793 4_4:+60018884 None:intergenic
CATGGACGATTCTAGTCCAA+AGG 0.558463 4_4:-60019846 Msa0691740:CDS
CTACGACACAAATTCAGTGA+TGG 0.563171 4_4:+60020956 None:intergenic
CAGTGATCCAGTTCAGCGCA+GGG 0.564590 4_4:-60019915 Msa0691740:CDS
CCCAAACTGATTGTATACTC+TGG 0.564770 4_4:+60018845 None:intergenic
CTACTCATTTATTTCTACCA+AGG 0.568395 4_4:-60016247 Msa0691740:three_prime_UTR
TCATACTGGGACAATCTTCG+CGG 0.577771 4_4:-60016965 Msa0691740:CDS
GAAAATGGAGGGAATACTCA+AGG 0.578572 4_4:-60016671 Msa0691740:CDS
TGATAAAACAAATTCATACT+GGG 0.578815 4_4:-60016978 Msa0691740:CDS
CCAGCTTCCAGATGCAACAC+CGG 0.580606 4_4:-60020134 Msa0691740:intron
GTCGATGAATTCAGCTGCAT+AGG 0.581217 4_4:-60019812 Msa0691740:intron
ATGACAAAGTTACACATCAA+GGG 0.583624 4_4:+60016384 None:intergenic
AAACACATCACAGGCAACAT+TGG 0.584006 4_4:+60018893 None:intergenic
ATGGAGGGAATACTCAAGGA+AGG 0.597715 4_4:-60016667 Msa0691740:CDS
TCGAGAATGATGAAGCAGAA+AGG 0.598097 4_4:-60017004 Msa0691740:CDS
ACACCAAGTTGCAAACGAAG+AGG 0.606484 4_4:-60020878 Msa0691740:CDS
ATTTGTGTCGTAGAAGCTCA+TGG 0.614378 4_4:-60020946 Msa0691740:CDS
AGCTGCTGCTAGAAAATGGA+GGG 0.615130 4_4:-60016682 Msa0691740:CDS
ATTAATTACATTGGACAGAG+AGG 0.619569 4_4:+60016556 None:intergenic
TCCAATGAATGCAGTCAACA+GGG 0.619810 4_4:+60018478 None:intergenic
TTCCTCTGGAAGTTTGACTG+TGG 0.633663 4_4:+60016626 None:intergenic
TTGTATGAAAACATGCCACC+CGG 0.634799 4_4:-60020086 Msa0691740:CDS
AGGGAATACTCAAGGAAGGG+TGG 0.636023 4_4:-60016663 Msa0691740:CDS
ACATGCCACCCGGATTTGAG+TGG 0.636275 4_4:-60020076 Msa0691740:CDS
CAGCTGCTGCTAGAAAATGG+AGG 0.647077 4_4:-60016683 Msa0691740:CDS
TTCCACAGTCAAACTTCCAG+AGG 0.649396 4_4:-60016628 Msa0691740:CDS
TGGAGGGAATACTCAAGGAA+GGG 0.660724 4_4:-60016666 Msa0691740:CDS
AACACCGGAGCAGATCAAGA+AGG 0.666069 4_4:-60020119 Msa0691740:CDS
GTGTCATGCAGGAACAAGCG+AGG 0.686221 4_4:-60017027 Msa0691740:intron
AGAGGAAACCTCTTCCACCA+AGG 0.699546 4_4:-60016610 Msa0691740:CDS
ATTTATAGCAGTATATACAA+GGG 0.703285 4_4:-60016440 Msa0691740:three_prime_UTR
CGTTGCCACTCAAATCCGGG+TGG 0.724566 4_4:+60020071 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAATTGATATTTTTTTAA+GGG + chr4_4:60016541-60016560 None:intergenic 10.0%
!!! AGTTAATTGATATTTTTTTA+AGG + chr4_4:60016542-60016561 None:intergenic 10.0%
!!! TGAATTAAAAAAAAGTTTTT+TGG + chr4_4:60016785-60016804 None:intergenic 10.0%
!!! TTTTATTTTTCGAATTTTTG+AGG + chr4_4:60015979-60015998 None:intergenic 15.0%
!! AAATGAAAATATAAAAATGG+AGG + chr4_4:60016026-60016045 None:intergenic 15.0%
!!! GTTGTTTTGATTTTTTAAAT+AGG - chr4_4:60018374-60018393 Msa0691740:intron 15.0%
!!! TATTACTGATATGTTTTATT+TGG - chr4_4:60018425-60018444 Msa0691740:CDS 15.0%
!! AAGTTATTCTTATATTGTTA+AGG + chr4_4:60019255-60019274 None:intergenic 15.0%
!! CAAAATTATGAAAAATGTTA+TGG + chr4_4:60019553-60019572 None:intergenic 15.0%
!! ATTATCTTAAAGAATATTCT+TGG + chr4_4:60019825-60019844 None:intergenic 15.0%
!!! TACTAATTTTACATTAATGA+GGG - chr4_4:60019933-60019952 Msa0691740:intron 15.0%
!! ATAATTATCTACTAAAGAAA+GGG + chr4_4:60020014-60020033 None:intergenic 15.0%
!! TATTGTTAAAAGAAAAATCA+TGG + chr4_4:60020277-60020296 None:intergenic 15.0%
!!! ACTATAATTGATGACTTTAA+TGG - chr4_4:60016095-60016114 Msa0691740:intron 20.0%
!!! TGTGTTTTTATAGAATTTCA+AGG - chr4_4:60016442-60016461 Msa0691740:three_prime_UTR 20.0%
!! ATACATGTGTATTATATGTT+AGG - chr4_4:60016506-60016525 Msa0691740:three_prime_UTR 20.0%
!! AAAATTCAAGATATCCAAAA+AGG + chr4_4:60017130-60017149 None:intergenic 20.0%
!! TATTATGCTTCAAAAATTTG+TGG - chr4_4:60017149-60017168 Msa0691740:intron 20.0%
!!! TTTTCTAACTTTTCTATTTC+AGG - chr4_4:60017179-60017198 Msa0691740:intron 20.0%
!!! TATCCAAAAAAGTTTGATTT+AGG - chr4_4:60017444-60017463 Msa0691740:intron 20.0%
!! AACACAATTCTTAAAATACT+AGG - chr4_4:60017761-60017780 Msa0691740:intron 20.0%
!!! TTTTATGTGCTTAATTGATA+TGG - chr4_4:60018071-60018090 Msa0691740:CDS 20.0%
!! CATTAACATCTAATTAACAA+AGG + chr4_4:60018132-60018151 None:intergenic 20.0%
!! AACATATCAGTAATATAGAA+TGG + chr4_4:60018420-60018439 None:intergenic 20.0%
!! TTGAAGTTAAGAAATAATAG+TGG + chr4_4:60018471-60018490 None:intergenic 20.0%
!!! TAGTTAAACACTTAGTTTTT+AGG - chr4_4:60018530-60018549 Msa0691740:intron 20.0%
!!! GAAATAAACTTTTATGACTT+TGG + chr4_4:60018734-60018753 None:intergenic 20.0%
!! GTTTAATGACTAAATTAATG+TGG + chr4_4:60018938-60018957 None:intergenic 20.0%
!! ATCTAACCATACTATAATAA+CGG - chr4_4:60019158-60019177 Msa0691740:intron 20.0%
!! CTTATATTGTTAAGGAAAAA+TGG + chr4_4:60019247-60019266 None:intergenic 20.0%
!! GAGAAAAAATGATAATTTAG+GGG + chr4_4:60019292-60019311 None:intergenic 20.0%
!! GGAGAAAAAATGATAATTTA+GGG + chr4_4:60019293-60019312 None:intergenic 20.0%
!! AGGAGAAAAAATGATAATTT+AGG + chr4_4:60019294-60019313 None:intergenic 20.0%
!! GAATTCAAAATTAGTGTAAA+CGG - chr4_4:60019339-60019358 Msa0691740:intron 20.0%
!!! TATGACATTACAAATTTTCA+AGG + chr4_4:60019395-60019414 None:intergenic 20.0%
!!! CTACTAATTTTACATTAATG+AGG - chr4_4:60019932-60019951 Msa0691740:intron 20.0%
!! CATAATTATCTACTAAAGAA+AGG + chr4_4:60020015-60020034 None:intergenic 20.0%
!! ATGATAAAACAAATTCATAC+TGG - chr4_4:60020142-60020161 Msa0691740:intron 20.0%
!! TGATAAAACAAATTCATACT+GGG - chr4_4:60020143-60020162 Msa0691740:intron 20.0%
!! GAATATGTAAATACAAAAGA+AGG - chr4_4:60020210-60020229 Msa0691740:intron 20.0%
!! ATCATTTCAAAACTATTTAG+TGG + chr4_4:60020372-60020391 None:intergenic 20.0%
!! ATATGTTATAGGGAAAATAA+GGG + chr4_4:60020545-60020564 None:intergenic 20.0%
!! TATGGATGAATTAATTACAT+TGG + chr4_4:60020577-60020596 None:intergenic 20.0%
!! AACAATCCATAATTGTAATT+TGG - chr4_4:60020636-60020655 Msa0691740:intron 20.0%
!! ACAATCCATAATTGTAATTT+GGG - chr4_4:60020637-60020656 Msa0691740:intron 20.0%
!! ATTTACCCAAATTACAATTA+TGG + chr4_4:60020645-60020664 None:intergenic 20.0%
!! ATTTATAGCAGTATATACAA+GGG - chr4_4:60020681-60020700 Msa0691740:intron 20.0%
!! AGAAAATTATTATCAGCTAA+AGG - chr4_4:60020802-60020821 Msa0691740:CDS 20.0%
!!! TATTTTTCGAATTTTTGAGG+TGG + chr4_4:60015976-60015995 None:intergenic 25.0%
!! AAATATGAAGGAACCATTTT+GGG + chr4_4:60016474-60016493 None:intergenic 25.0%
!! AAAATATGAAGGAACCATTT+TGG + chr4_4:60016475-60016494 None:intergenic 25.0%
!! AATGTGTCTTTTAGTCAATT+TGG - chr4_4:60016665-60016684 Msa0691740:CDS 25.0%
! TTATTTACAAAAGAGACACT+TGG - chr4_4:60016697-60016716 Msa0691740:CDS 25.0%
! TATTTACAAAAGAGACACTT+GGG - chr4_4:60016698-60016717 Msa0691740:CDS 25.0%
!!! TGAGTAATTTTTCAGAGAAT+AGG - chr4_4:60016859-60016878 Msa0691740:intron 25.0%
! AATGTTGCCTTATATGTTAA+CGG - chr4_4:60017359-60017378 Msa0691740:intron 25.0%
!! TTTATGTGTGTCCATTTTAT+AGG + chr4_4:60017710-60017729 None:intergenic 25.0%
! ATAAAATGGACACACATAAA+AGG - chr4_4:60017710-60017729 Msa0691740:intron 25.0%
! AAGACAATTGAATCAAAATG+TGG + chr4_4:60017918-60017937 None:intergenic 25.0%
! TTTCCTTAATTTAACTCCTT+TGG - chr4_4:60017936-60017955 Msa0691740:intron 25.0%
! TTACCAAAGGAGTTAAATTA+AGG + chr4_4:60017942-60017961 None:intergenic 25.0%
! CTAATTAACAAAGGTAATGA+AGG + chr4_4:60018123-60018142 None:intergenic 25.0%
!!! ATCTATTTTGAGTTTTTGCA+AGG - chr4_4:60018154-60018173 Msa0691740:intron 25.0%
! ATATCAGTAATATAGAATGG+TGG + chr4_4:60018417-60018436 None:intergenic 25.0%
!!! TTACATTGACTCTTTCTATA+CGG + chr4_4:60018709-60018728 None:intergenic 25.0%
! TTACAAATAGAGATCTTAAG+GGG + chr4_4:60018766-60018785 None:intergenic 25.0%
! CTTACAAATAGAGATCTTAA+GGG + chr4_4:60018767-60018786 None:intergenic 25.0%
! TCTTACAAATAGAGATCTTA+AGG + chr4_4:60018768-60018787 None:intergenic 25.0%
!!! GCTATTTAACTTTTCATACT+AGG - chr4_4:60018869-60018888 Msa0691740:CDS 25.0%
! GAAAAGACAGTTAAAATTCT+TGG - chr4_4:60019201-60019220 Msa0691740:intron 25.0%
!!! ATTTTTTCTCCTGTTAATCT+TGG - chr4_4:60019302-60019321 Msa0691740:intron 25.0%
!!! TTTTTTCTCCTGTTAATCTT+GGG - chr4_4:60019303-60019322 Msa0691740:intron 25.0%
! TCTCAACAAATATGAATTCT+AGG + chr4_4:60019642-60019661 None:intergenic 25.0%
! AACATATCTGTAAGCAATTT+AGG + chr4_4:60019667-60019686 None:intergenic 25.0%
!! TTTTAACAATATGCTTCAGT+AGG - chr4_4:60020286-60020305 Msa0691740:intron 25.0%
! TTCAAAACTATTTAGTGGAA+TGG + chr4_4:60020367-60020386 None:intergenic 25.0%
!! AAATGATGATAATTTTGCAG+AGG - chr4_4:60020385-60020404 Msa0691740:intron 25.0%
! GATATGTTATAGGGAAAATA+AGG + chr4_4:60020546-60020565 None:intergenic 25.0%
! ATTCAATGACATGCTATATA+TGG + chr4_4:60020595-60020614 None:intergenic 25.0%
! GATTTATAGCAGTATATACA+AGG - chr4_4:60020680-60020699 Msa0691740:intron 25.0%
!! TATTTCTACCAAGGATTTAA+AGG - chr4_4:60020883-60020902 Msa0691740:CDS 25.0%
! ATTTCTACCAAGGATTTAAA+GGG - chr4_4:60020884-60020903 Msa0691740:CDS 25.0%
!!! TCACAAAAGTTGTTGATTTT+TGG + chr4_4:60020967-60020986 None:intergenic 25.0%
!!! TCTACTTTTCCTTTGAAAAT+TGG + chr4_4:60020996-60021015 None:intergenic 25.0%
!!! GAGGTTGATATTTTGTTGAA+TGG + chr4_4:60016007-60016026 None:intergenic 30.0%
GTTCTGTTCTACATAGAAAT+AGG + chr4_4:60016054-60016073 None:intergenic 30.0%
! TGAAGACTATTATGCAGTTT+TGG - chr4_4:60016329-60016348 Msa0691740:three_prime_UTR 30.0%
! GAAGACTATTATGCAGTTTT+GGG - chr4_4:60016330-60016349 Msa0691740:three_prime_UTR 30.0%
ACAGACGTAAAATAAGAGTT+TGG + chr4_4:60016373-60016392 None:intergenic 30.0%
TTCAAGGATATTACCCAAAA+TGG - chr4_4:60016458-60016477 Msa0691740:three_prime_UTR 30.0%
! AATGGTTCCTTCATATTTTC+TGG - chr4_4:60016476-60016495 Msa0691740:three_prime_UTR 30.0%
! ATGGTTCCTTCATATTTTCT+GGG - chr4_4:60016477-60016496 Msa0691740:three_prime_UTR 30.0%
TGTGTATTATATGTTAGGAG+AGG - chr4_4:60016511-60016530 Msa0691740:three_prime_UTR 30.0%
ACTAACAAGGAAGTAAATCA+CGG + chr4_4:60016631-60016650 None:intergenic 30.0%
!!! ATTCGACGAGTTTTAGTTTA+AGG - chr4_4:60016732-60016751 Msa0691740:intron 30.0%
TTAGTTTAAGGAGTTGAACA+AGG - chr4_4:60016744-60016763 Msa0691740:intron 30.0%
TAGTTTAAGGAGTTGAACAA+GGG - chr4_4:60016745-60016764 Msa0691740:intron 30.0%
CTCATAGACTTCATTAATGA+AGG + chr4_4:60017100-60017119 None:intergenic 30.0%
CTTCATTAATGAAGTCTATG+AGG - chr4_4:60017098-60017117 Msa0691740:intron 30.0%
AGGGTTTATGATGATATTCA+TGG - chr4_4:60017225-60017244 Msa0691740:intron 30.0%
TACCAAATATTTAGACCACT+GGG - chr4_4:60017389-60017408 Msa0691740:intron 30.0%
!!! CGTCCTAAATCAAACTTTTT+TGG + chr4_4:60017450-60017469 None:intergenic 30.0%
TATCCAGTATAGTAGTTATG+GGG + chr4_4:60017498-60017517 None:intergenic 30.0%
CTATCCAGTATAGTAGTTAT+GGG + chr4_4:60017499-60017518 None:intergenic 30.0%
CATAACTACTATACTGGATA+GGG - chr4_4:60017498-60017517 Msa0691740:intron 30.0%
ACTCATGATTAGCAATGATT+GGG + chr4_4:60017623-60017642 None:intergenic 30.0%
! GTGTCCATTTTATAGGATTT+GGG + chr4_4:60017703-60017722 None:intergenic 30.0%
! TGTGTCCATTTTATAGGATT+TGG + chr4_4:60017704-60017723 None:intergenic 30.0%
TTGTTAGGGTAAATTACCAA+AGG + chr4_4:60017955-60017974 None:intergenic 30.0%
! TCGGAAATGCTTTTCAATAA+AGG + chr4_4:60017991-60018010 None:intergenic 30.0%
GTCAGCATTTATTATCTCTT+CGG + chr4_4:60018037-60018056 None:intergenic 30.0%
ATACTTCAATATCCTTGAAC+AGG - chr4_4:60018191-60018210 Msa0691740:intron 30.0%
! TTTGGAATTGAAGAAGACTT+TGG - chr4_4:60018248-60018267 Msa0691740:intron 30.0%
GAACCCTGAATTAATTCAAA+CGG - chr4_4:60018298-60018317 Msa0691740:intron 30.0%
TAGCCGTTTGAATTAATTCA+GGG + chr4_4:60018304-60018323 None:intergenic 30.0%
ATAGCCGTTTGAATTAATTC+AGG + chr4_4:60018305-60018324 None:intergenic 30.0%
!! AAGTTGGTATGTTTATGACT+AGG - chr4_4:60018328-60018347 Msa0691740:intron 30.0%
ATATGCAGTTATGCTTCATT+TGG - chr4_4:60018505-60018524 Msa0691740:intron 30.0%
GTATAGAAAGAGTCAATGTA+AGG - chr4_4:60018708-60018727 Msa0691740:intron 30.0%
TACAAATAGAGATCTTAAGG+GGG + chr4_4:60018765-60018784 None:intergenic 30.0%
CATACTAGGAAATTTCTTGA+TGG - chr4_4:60018883-60018902 Msa0691740:CDS 30.0%
GTAGTTGTTATAACTAGAAG+AGG + chr4_4:60018998-60019017 None:intergenic 30.0%
! TTTAGTTCCTGAAAGATAGA+AGG - chr4_4:60019419-60019438 Msa0691740:intron 30.0%
TTAGTTCCTGAAAGATAGAA+GGG - chr4_4:60019420-60019439 Msa0691740:intron 30.0%
!! CAAGCATAAACGTATTTTGA+TGG - chr4_4:60019505-60019524 Msa0691740:intron 30.0%
CAACTAATCGTGGATAATAA+TGG + chr4_4:60019608-60019627 None:intergenic 30.0%
GTAAAACTTTCAACTAATCG+TGG + chr4_4:60019618-60019637 None:intergenic 30.0%
CCATCTTAAAATTTGTGCTT+AGG + chr4_4:60019719-60019738 None:intergenic 30.0%
!! CCTAAGCACAAATTTTAAGA+TGG - chr4_4:60019716-60019735 Msa0691740:intron 30.0%
CTAACTAAACACCAAGATAT+GGG + chr4_4:60019787-60019806 None:intergenic 30.0%
!! TTTGTAAGTTCTGAGTTCTT+AGG - chr4_4:60019872-60019891 Msa0691740:CDS 30.0%
CTACTAAAGAAAGGGATAAT+AGG + chr4_4:60020006-60020025 None:intergenic 30.0%
TCATGGTTGATCAAGTATTA+TGG + chr4_4:60020260-60020279 None:intergenic 30.0%
CATGATTATTTAGCTGTTTG+TGG - chr4_4:60020309-60020328 Msa0691740:intron 30.0%
ATTAATTACATTGGACAGAG+AGG + chr4_4:60020568-60020587 None:intergenic 30.0%
ATGACAAAGTTACACATCAA+GGG + chr4_4:60020740-60020759 None:intergenic 30.0%
AATGACAAAGTTACACATCA+AGG + chr4_4:60020741-60020760 None:intergenic 30.0%
!! CTACTCATTTATTTCTACCA+AGG - chr4_4:60020874-60020893 Msa0691740:CDS 30.0%
!! ACTTTTCCTTTGAAAATTGG+TGG + chr4_4:60020993-60021012 None:intergenic 30.0%
! ACTTTCTCTCTCTATTGTTT+TGG + chr4_4:60021033-60021052 None:intergenic 30.0%
!!! TTTTCGAATTTTTGAGGTGG+AGG + chr4_4:60015973-60015992 None:intergenic 35.0%
! TTTAGAGCTTCTGTGTATAG+TGG + chr4_4:60016135-60016154 None:intergenic 35.0%
TACGACACAAATTCAGTGAT+GGG + chr4_4:60016167-60016186 None:intergenic 35.0%
AAAAAACTGCAACTAGTCCA+TGG - chr4_4:60016211-60016230 Msa0691740:three_prime_UTR 35.0%
AGTAAAAGTTGCTACTGATC+AGG - chr4_4:60016275-60016294 Msa0691740:three_prime_UTR 35.0%
GAGGACTAAACTAACTAACA+AGG + chr4_4:60016644-60016663 None:intergenic 35.0%
TTGACTAAAAGACACATTCG+AGG + chr4_4:60016663-60016682 None:intergenic 35.0%
AGTTGAACAAGGGAATATCT+TGG - chr4_4:60016755-60016774 Msa0691740:intron 35.0%
! TTGAGTGATTTTCTGAACTG+TGG - chr4_4:60016809-60016828 Msa0691740:intron 35.0%
! TGAGTGATTTTCTGAACTGT+GGG - chr4_4:60016810-60016829 Msa0691740:intron 35.0%
! AATGAAGGTGCAGAAATTTG+TGG + chr4_4:60017085-60017104 None:intergenic 35.0%
CATTAATGAAGTCTATGAGG+TGG - chr4_4:60017101-60017120 Msa0691740:intron 35.0%
GACATCAATCAATCCTTTCA+TGG - chr4_4:60017257-60017276 Msa0691740:intron 35.0%
CTGAACACCGTTAACATATA+AGG + chr4_4:60017369-60017388 None:intergenic 35.0%
GTACCAAATATTTAGACCAC+TGG - chr4_4:60017388-60017407 Msa0691740:intron 35.0%
ATCCAGTATAGTAGTTATGG+GGG + chr4_4:60017497-60017516 None:intergenic 35.0%
CCTATCCAGTATAGTAGTTA+TGG + chr4_4:60017500-60017519 None:intergenic 35.0%
CCATAACTACTATACTGGAT+AGG - chr4_4:60017497-60017516 Msa0691740:intron 35.0%
AGCAAGTCCATTATTATGGA+CGG + chr4_4:60017551-60017570 None:intergenic 35.0%
AAGGAGCAAGTCCATTATTA+TGG + chr4_4:60017555-60017574 None:intergenic 35.0%
CACTCATGATTAGCAATGAT+TGG + chr4_4:60017624-60017643 None:intergenic 35.0%
AATCATGAGTGAATATCCTG+TGG - chr4_4:60017633-60017652 Msa0691740:intron 35.0%
ATCATGAGTGAATATCCTGT+GGG - chr4_4:60017634-60017653 Msa0691740:intron 35.0%
AAGGCCCAAATCCTATAAAA+TGG - chr4_4:60017696-60017715 Msa0691740:intron 35.0%
ACTAGGTTATCCTCCAATTA+AGG - chr4_4:60017778-60017797 Msa0691740:intron 35.0%
CTAGGTTATCCTCCAATTAA+GGG - chr4_4:60017779-60017798 Msa0691740:intron 35.0%
TCACTCATCTTGAACAGAAA+CGG - chr4_4:60017804-60017823 Msa0691740:intron 35.0%
!! GAAGTGTTGTCAGATTGTTA+GGG + chr4_4:60017969-60017988 None:intergenic 35.0%
! ATTTGACTGACTCATCGAAT+CGG + chr4_4:60018010-60018029 None:intergenic 35.0%
AAGGTAATGAAGGACTATCT+AGG + chr4_4:60018113-60018132 None:intergenic 35.0%
TTCAATTCCAAACACATCAC+AGG + chr4_4:60018240-60018259 None:intergenic 35.0%
CCAGAGTATACAATCAGTTT+GGG - chr4_4:60018276-60018295 Msa0691740:intron 35.0%
TTCAAACGGCTATTGAAAGT+TGG - chr4_4:60018312-60018331 Msa0691740:intron 35.0%
!!! CACTTAGTTTTTAGGACCTT+CGG - chr4_4:60018538-60018557 Msa0691740:intron 35.0%
!!! CAATGTTATTTTCATGCCGA+AGG + chr4_4:60018557-60018576 None:intergenic 35.0%
TTGTGAAGCAACTAAGCTAA+CGG - chr4_4:60018578-60018597 Msa0691740:intron 35.0%
ACAAATAGAGATCTTAAGGG+GGG + chr4_4:60018764-60018783 None:intergenic 35.0%
!!! TTTTTTCCCTTTCTGCTTGA+TGG - chr4_4:60018806-60018825 Msa0691740:intron 35.0%
! ATTAGGCGATGTTTTCAGAA+TGG - chr4_4:60019072-60019091 Msa0691740:intron 35.0%
GGTAATAGCTTAGAGATTAC+TGG - chr4_4:60019093-60019112 Msa0691740:intron 35.0%
GTATGGTTAGATAACATCAG+AGG + chr4_4:60019150-60019169 None:intergenic 35.0%
AACCATACTATAATAACGGC+AGG - chr4_4:60019162-60019181 Msa0691740:intron 35.0%
! TTAACTGTCTTTTCTCCCAT+CGG + chr4_4:60019195-60019214 None:intergenic 35.0%
AATCTTGGGAAAGGTCTTTA+TGG - chr4_4:60019317-60019336 Msa0691740:intron 35.0%
AAATTAGTGTAAACGGCCAT+TGG - chr4_4:60019346-60019365 Msa0691740:intron 35.0%
GATATACCCTTCTATCTTTC+AGG + chr4_4:60019429-60019448 None:intergenic 35.0%
CCTAACTAAACACCAAGATA+TGG + chr4_4:60019788-60019807 None:intergenic 35.0%
!! CCATATCTTGGTGTTTAGTT+AGG - chr4_4:60019785-60019804 Msa0691740:intron 35.0%
!! AAGTTCTGAGTTCTTAGGAT+TGG - chr4_4:60019877-60019896 Msa0691740:CDS 35.0%
AACAATTATGAGTGTCATGC+AGG - chr4_4:60020083-60020102 Msa0691740:CDS 35.0%
AGACTACGAAAATTCAGGTA+TGG - chr4_4:60020188-60020207 Msa0691740:intron 35.0%
! TGATGATAATTTTGCAGAGG+AGG - chr4_4:60020388-60020407 Msa0691740:intron 35.0%
AAATAAGGGTCATTAGTCCT+TGG + chr4_4:60020531-60020550 None:intergenic 35.0%
GACAGAGAGGATATGTTATA+GGG + chr4_4:60020555-60020574 None:intergenic 35.0%
ACCAAGGATTTAAAGGGATA+AGG - chr4_4:60020890-60020909 Msa0691740:CDS 35.0%
TCCTTATCCCTTTAAATCCT+TGG + chr4_4:60020894-60020913 None:intergenic 35.0%
! TGACAACCACCAATTTTCAA+AGG - chr4_4:60020984-60021003 Msa0691740:CDS 35.0%
AGGAAAAGTAGATAGTGACA+CGG - chr4_4:60021004-60021023 Msa0691740:CDS 35.0%
GAGAGATAAAGTTGTCACAT+AGG - chr4_4:60021072-60021091 Msa0691740:five_prime_UTR 35.0%
TCACATAGGTTGTCACAAAA+TGG - chr4_4:60021086-60021105 Msa0691740:five_prime_UTR 35.0%
!! ACAAATTCAGTGATGGGTTG+TGG + chr4_4:60016161-60016180 None:intergenic 40.0%
CTACGACACAAATTCAGTGA+TGG + chr4_4:60016168-60016187 None:intergenic 40.0%
ATTTGTGTCGTAGAAGCTCA+TGG - chr4_4:60016175-60016194 Msa0691740:intron 40.0%
AAACCTCTTCGTTTGCAACT+TGG + chr4_4:60016249-60016268 None:intergenic 40.0%
! AGTTGCAAACGAAGAGGTTT+TGG - chr4_4:60016249-60016268 Msa0691740:three_prime_UTR 40.0%
! TTTTCAACCAGTGACAGTGT+TGG - chr4_4:60016303-60016322 Msa0691740:three_prime_UTR 40.0%
!!! CTATTATGCAGTTTTGGGTC+TGG - chr4_4:60016335-60016354 Msa0691740:three_prime_UTR 40.0%
!!! TCCTTCATATTTTCTGGGAC+TGG - chr4_4:60016482-60016501 Msa0691740:three_prime_UTR 40.0%
!!! CCTTCATATTTTCTGGGACT+GGG - chr4_4:60016483-60016502 Msa0691740:three_prime_UTR 40.0%
CACGGACAAAAGACACATTT+AGG + chr4_4:60016613-60016632 None:intergenic 40.0%
TCCAGCTAATATATCGTCTG+CGG + chr4_4:60016889-60016908 None:intergenic 40.0%
TTGTATGAAAACATGCCACC+CGG - chr4_4:60017035-60017054 Msa0691740:intron 40.0%
! CTATGAGGTGGTTTCCTTTT+TGG - chr4_4:60017113-60017132 Msa0691740:intron 40.0%
TCGACGAAAACATGATCCTT+TGG + chr4_4:60017294-60017313 None:intergenic 40.0%
GACGACTGAGTAAAGAATGT+AGG - chr4_4:60017466-60017485 Msa0691740:intron 40.0%
AGTATAGTAGTTATGGGGGA+TGG + chr4_4:60017493-60017512 None:intergenic 40.0%
ATCCCCCATAACTACTATAC+TGG - chr4_4:60017492-60017511 Msa0691740:intron 40.0%
TACTATACTGGATAGGGAGA+TGG - chr4_4:60017504-60017523 Msa0691740:intron 40.0%
ACTATACTGGATAGGGAGAT+GGG - chr4_4:60017505-60017524 Msa0691740:intron 40.0%
ATGATTGGGTGAGGTATGAA+GGG + chr4_4:60017609-60017628 None:intergenic 40.0%
AATGATTGGGTGAGGTATGA+AGG + chr4_4:60017610-60017629 None:intergenic 40.0%
TGATTAGCAATGATTGGGTG+AGG + chr4_4:60017618-60017637 None:intergenic 40.0%
TCATGAGTGAATATCCTGTG+GGG - chr4_4:60017635-60017654 Msa0691740:intron 40.0%
GGACACACATAAAAGGCTAA+AGG - chr4_4:60017717-60017736 Msa0691740:intron 40.0%
AGATGAGTGACACCCTTAAT+TGG + chr4_4:60017794-60017813 None:intergenic 40.0%
!! GGAAGTGTTGTCAGATTGTT+AGG + chr4_4:60017970-60017989 None:intergenic 40.0%
AAACACATCACAGGCAACAT+TGG + chr4_4:60018231-60018250 None:intergenic 40.0%
AATGTTGCCTGTGATGTGTT+TGG - chr4_4:60018230-60018249 Msa0691740:intron 40.0%
GCCAGAGTATACAATCAGTT+TGG - chr4_4:60018275-60018294 Msa0691740:intron 40.0%
CCCAAACTGATTGTATACTC+TGG + chr4_4:60018279-60018298 None:intergenic 40.0%
TCCAATGAATGCAGTCAACA+GGG + chr4_4:60018646-60018665 None:intergenic 40.0%
TAGTAGCCATCAAGCAGAAA+GGG + chr4_4:60018815-60018834 None:intergenic 40.0%
TTAGTAGCCATCAAGCAGAA+AGG + chr4_4:60018816-60018835 None:intergenic 40.0%
TGAGATTCTTAAATCCGAGC+AGG - chr4_4:60019018-60019037 Msa0691740:intron 40.0%
TGCTCTAATGCTTTCAGGAA+TGG - chr4_4:60019042-60019061 Msa0691740:intron 40.0%
GCTCTAATGCTTTCAGGAAT+GGG - chr4_4:60019043-60019062 Msa0691740:intron 40.0%
TGCCTGCCGTTATTATAGTA+TGG + chr4_4:60019167-60019186 None:intergenic 40.0%
! TAACTGTCTTTTCTCCCATC+GGG + chr4_4:60019194-60019213 None:intergenic 40.0%
TCTCCTGTTAATCTTGGGAA+AGG - chr4_4:60019308-60019327 Msa0691740:intron 40.0%
AGACCTTTCCCAAGATTAAC+AGG + chr4_4:60019314-60019333 None:intergenic 40.0%
ATGTCCGCTCTTGAGTATAA+CGG - chr4_4:60019742-60019761 Msa0691740:intron 40.0%
AAGAAAGGGATAATAGGTCG+AGG + chr4_4:60020000-60020019 None:intergenic 40.0%
TCGAGAATGATGAAGCAGAA+AGG - chr4_4:60020117-60020136 Msa0691740:CDS 40.0%
! CCTGAATTTTCGTAGTCTCT+TGG + chr4_4:60020186-60020205 None:intergenic 40.0%
CCAAGAGACTACGAAAATTC+AGG - chr4_4:60020183-60020202 Msa0691740:intron 40.0%
GAAAATGGAGGGAATACTCA+AGG - chr4_4:60020450-60020469 Msa0691740:intron 40.0%
GGACAGAGAGGATATGTTAT+AGG + chr4_4:60020556-60020575 None:intergenic 40.0%
!! CTTGGTGTTGCAAATCTCCA+TGG + chr4_4:60016231-60016250 None:intergenic 45.0%
ACACCAAGTTGCAAACGAAG+AGG - chr4_4:60016243-60016262 Msa0691740:three_prime_UTR 45.0%
CCCAGTCCCAGAAAATATGA+AGG + chr4_4:60016486-60016505 None:intergenic 45.0%
ACCGCAGACGATATATTAGC+TGG - chr4_4:60016885-60016904 Msa0691740:intron 45.0%
GCATCTGGAAGCTGGTAAAA+AGG + chr4_4:60016982-60017001 None:intergenic 45.0%
TATGCCTTCTTGATCTGCTC+CGG + chr4_4:60017009-60017028 None:intergenic 45.0%
GTGCAGAAATTTGTGGTCTC+GGG + chr4_4:60017078-60017097 None:intergenic 45.0%
GGTGCAGAAATTTGTGGTCT+CGG + chr4_4:60017079-60017098 None:intergenic 45.0%
GGACTAGAATCGTCCATGAA+AGG + chr4_4:60017273-60017292 None:intergenic 45.0%
CATGGACGATTCTAGTCCAA+AGG - chr4_4:60017275-60017294 Msa0691740:intron 45.0%
GTCGATGAATTCAGCTGCAT+AGG - chr4_4:60017309-60017328 Msa0691740:intron 45.0%
GGCCCAGTGGTCTAAATATT+TGG + chr4_4:60017394-60017413 None:intergenic 45.0%
AATATTTAGACCACTGGGCC+AGG - chr4_4:60017394-60017413 Msa0691740:intron 45.0%
CTATACTGGATAGGGAGATG+GGG - chr4_4:60017506-60017525 Msa0691740:intron 45.0%
AGAGCGACCGTCCATAATAA+TGG - chr4_4:60017541-60017560 Msa0691740:intron 45.0%
TGAGTGACACCCTTAATTGG+AGG + chr4_4:60017791-60017810 None:intergenic 45.0%
CGTCTGAAAACACCAAGTCT+AGG + chr4_4:60017833-60017852 None:intergenic 45.0%
! CAGTTTTTGCAGCCTGTTCA+AGG + chr4_4:60018206-60018225 None:intergenic 45.0%
GTCCAATGAATGCAGTCAAC+AGG + chr4_4:60018647-60018666 None:intergenic 45.0%
TAGAGATCTTAAGGGGGGAA+AGG + chr4_4:60018759-60018778 None:intergenic 45.0%
AAGCATTAGAGCAACCTGCT+CGG + chr4_4:60019035-60019054 None:intergenic 45.0%
CAGGTTGCTCTAATGCTTTC+AGG - chr4_4:60019037-60019056 Msa0691740:intron 45.0%
TCAGGAATGGGATCAGCATT+AGG - chr4_4:60019055-60019074 Msa0691740:intron 45.0%
CAGTCCGTTATACTCAAGAG+CGG + chr4_4:60019749-60019768 None:intergenic 45.0%
GACTTGAGAGTCCCATATCT+TGG - chr4_4:60019773-60019792 Msa0691740:intron 45.0%
TACTGCGTTTGTGTTCAAGC+GGG + chr4_4:60019908-60019927 None:intergenic 45.0%
CTACTGCGTTTGTGTTCAAG+CGG + chr4_4:60019909-60019928 None:intergenic 45.0%
TCATACTGGGACAATCTTCG+CGG - chr4_4:60020156-60020175 Msa0691740:intron 45.0%
AGCTGCTGCTAGAAAATGGA+GGG - chr4_4:60020439-60020458 Msa0691740:intron 45.0%
ATGGAGGGAATACTCAAGGA+AGG - chr4_4:60020454-60020473 Msa0691740:intron 45.0%
TGGAGGGAATACTCAAGGAA+GGG - chr4_4:60020455-60020474 Msa0691740:intron 45.0%
TCTGGAAGTTTGACTGTGGA+AGG + chr4_4:60020494-60020513 None:intergenic 45.0%
TTCCACAGTCAAACTTCCAG+AGG - chr4_4:60020493-60020512 Msa0691740:intron 45.0%
! TTCCTCTGGAAGTTTGACTG+TGG + chr4_4:60020498-60020517 None:intergenic 45.0%
TCATTAGTCCTTGGTGGAAG+AGG + chr4_4:60020522-60020541 None:intergenic 45.0%
TAAGGGTCATTAGTCCTTGG+TGG + chr4_4:60020528-60020547 None:intergenic 45.0%
!! TAAAAATGAAAATATAAAAA+TGG + chr4_4:60016029-60016048 None:intergenic 5.0%
TTCAGCTCCAACACTGTCAC+TGG + chr4_4:60016313-60016332 None:intergenic 50.0%
AACACCGGAGCAGATCAAGA+AGG - chr4_4:60017002-60017021 Msa0691740:CDS 50.0%
GATCGTTGCCACTCAAATCC+GGG + chr4_4:60017056-60017075 None:intergenic 50.0%
GGATCGTTGCCACTCAAATC+CGG + chr4_4:60017057-60017076 None:intergenic 50.0%
TCATAAACCCTGCGCTGAAC+TGG + chr4_4:60017216-60017235 None:intergenic 50.0%
ATACAACTTACCCCTCCCGA+TGG + chr4_4:60017427-60017446 None:intergenic 50.0%
TATGGACGGTCGCTCTTACT+TGG + chr4_4:60017537-60017556 None:intergenic 50.0%
GCTCCTTCCAGTTCCAAACA+TGG - chr4_4:60017568-60017587 Msa0691740:intron 50.0%
! ACGCCATGTTTGGAACTGGA+AGG + chr4_4:60017574-60017593 None:intergenic 50.0%
! TGTCACGCCATGTTTGGAAC+TGG + chr4_4:60017578-60017597 None:intergenic 50.0%
CAGAAACGGTGACCTAGACT+TGG - chr4_4:60017818-60017837 Msa0691740:intron 50.0%
! GCCCTGTTGACTGCATTCAT+TGG - chr4_4:60018642-60018661 Msa0691740:intron 50.0%
CGCAGTCATTCAAGAGCCAA+TGG + chr4_4:60019365-60019384 None:intergenic 50.0%
CTGCAGCTGCTGCTAGAAAA+TGG - chr4_4:60020435-60020454 Msa0691740:intron 50.0%
CAGCTGCTGCTAGAAAATGG+AGG - chr4_4:60020438-60020457 Msa0691740:intron 50.0%
AGGGAATACTCAAGGAAGGG+TGG - chr4_4:60020458-60020477 Msa0691740:intron 50.0%
TTGGTGGAAGAGGTTTCCTC+TGG + chr4_4:60020512-60020531 None:intergenic 50.0%
AGAGGAAACCTCTTCCACCA+AGG - chr4_4:60020511-60020530 Msa0691740:intron 50.0%
CCAGCTTCCAGATGCAACAC+CGG - chr4_4:60016987-60017006 Msa0691740:CDS 55.0%
!! ATCTGCTCCGGTGTTGCATC+TGG + chr4_4:60016997-60017016 None:intergenic 55.0%
ACATGCCACCCGGATTTGAG+TGG - chr4_4:60017045-60017064 Msa0691740:intron 55.0%
TCAGTGATCCAGTTCAGCGC+AGG - chr4_4:60017205-60017224 Msa0691740:intron 55.0%
CAGTGATCCAGTTCAGCGCA+GGG - chr4_4:60017206-60017225 Msa0691740:intron 55.0%
TGGGCCAGGCTCAATTCCAT+CGG - chr4_4:60017408-60017427 Msa0691740:intron 55.0%
CAGGCTCAATTCCATCGGGA+GGG - chr4_4:60017413-60017432 Msa0691740:intron 55.0%
AGGCTCAATTCCATCGGGAG+GGG - chr4_4:60017414-60017433 Msa0691740:intron 55.0%
GGGACCAAGCACCCAAATCA+GGG - chr4_4:60017655-60017674 Msa0691740:intron 55.0%
ACCAAGCACCCAAATCAGGG+TGG - chr4_4:60017658-60017677 Msa0691740:intron 55.0%
CCAAGCACCCAAATCAGGGT+GGG - chr4_4:60017659-60017678 Msa0691740:intron 55.0%
TTGGGCCTTCTCCTTTCGTC+AGG + chr4_4:60017685-60017704 None:intergenic 55.0%
AACGGCAGGCAAATACCCGA+TGG - chr4_4:60019176-60019195 Msa0691740:intron 55.0%
ACGGCAGGCAAATACCCGAT+GGG - chr4_4:60019177-60019196 Msa0691740:intron 55.0%
GCGTTTGTGTTCAAGCGGGT+TGG + chr4_4:60019904-60019923 None:intergenic 55.0%
GTGTCATGCAGGAACAAGCG+AGG - chr4_4:60020094-60020113 Msa0691740:CDS 55.0%
!! CCGGTGTTGCATCTGGAAGC+TGG + chr4_4:60016990-60017009 None:intergenic 60.0%
CGTTGCCACTCAAATCCGGG+TGG + chr4_4:60017053-60017072 None:intergenic 60.0%
TGGAATTGAGCCTGGCCCAG+TGG + chr4_4:60017407-60017426 None:intergenic 60.0%
GGGCCAGGCTCAATTCCATC+GGG - chr4_4:60017409-60017428 Msa0691740:intron 60.0%
CCTCCCGATGGAATTGAGCC+TGG + chr4_4:60017415-60017434 None:intergenic 60.0%
CCAGGCTCAATTCCATCGGG+AGG - chr4_4:60017412-60017431 Msa0691740:intron 60.0%
GACGCGTGTCACGCCATGTT+TGG + chr4_4:60017584-60017603 None:intergenic 60.0%
TTTGGGTGCTTGGTCCCCAC+AGG + chr4_4:60017652-60017671 None:intergenic 60.0%
GGGGACCAAGCACCCAAATC+AGG - chr4_4:60017654-60017673 Msa0691740:intron 60.0%
!! CCCACCCTGATTTGGGTGCT+TGG + chr4_4:60017662-60017681 None:intergenic 60.0%
CGTCAGGCCCACCCTGATTT+GGG + chr4_4:60017669-60017688 None:intergenic 60.0%
TCGTCAGGCCCACCCTGATT+TGG + chr4_4:60017670-60017689 None:intergenic 60.0%
ATCAGGGTGGGCCTGACGAA+AGG - chr4_4:60017671-60017690 Msa0691740:intron 60.0%
GTGGGCCTGACGAAAGGAGA+AGG - chr4_4:60017677-60017696 Msa0691740:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 60015968 60021175 60015968 ID=Msa0691740;Name=Msa0691740
chr4_4 mRNA 60015968 60021175 60015968 ID=Msa0691740-mRNA-1;Parent=Msa0691740;Name=Msa0691740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=137|0.87|1|1|0.87|0.77|9|443|333
chr4_4 exon 60015968 60016007 60015968 ID=Msa0691740-mRNA-1:exon:16383;Parent=Msa0691740-mRNA-1
chr4_4 exon 60016202 60016738 60016202 ID=Msa0691740-mRNA-1:exon:16382;Parent=Msa0691740-mRNA-1
chr4_4 exon 60016939 60017038 60016939 ID=Msa0691740-mRNA-1:exon:16381;Parent=Msa0691740-mRNA-1
chr4_4 exon 60018050 60018103 60018050 ID=Msa0691740-mRNA-1:exon:16380;Parent=Msa0691740-mRNA-1
chr4_4 exon 60018419 60018500 60018419 ID=Msa0691740-mRNA-1:exon:16379;Parent=Msa0691740-mRNA-1
chr4_4 exon 60018810 60018930 60018810 ID=Msa0691740-mRNA-1:exon:16378;Parent=Msa0691740-mRNA-1
chr4_4 exon 60019813 60019942 60019813 ID=Msa0691740-mRNA-1:exon:16377;Parent=Msa0691740-mRNA-1
chr4_4 exon 60020024 60020152 60020024 ID=Msa0691740-mRNA-1:exon:16376;Parent=Msa0691740-mRNA-1
chr4_4 exon 60020787 60021175 60020787 ID=Msa0691740-mRNA-1:exon:16375;Parent=Msa0691740-mRNA-1
chr4_4 five_prime_UTR 60021039 60021175 60021039 ID=Msa0691740-mRNA-1:five_prime_utr;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60020787 60021038 60020787 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60020024 60020152 60020024 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60019813 60019942 60019813 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60018810 60018930 60018810 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60018419 60018500 60018419 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60018050 60018103 60018050 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60016939 60017038 60016939 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 CDS 60016605 60016738 60016605 ID=Msa0691740-mRNA-1:cds;Parent=Msa0691740-mRNA-1
chr4_4 three_prime_UTR 60016202 60016604 60016202 ID=Msa0691740-mRNA-1:three_prime_utr;Parent=Msa0691740-mRNA-1
chr4_4 three_prime_UTR 60015968 60016007 60015968 ID=Msa0691740-mRNA-1:three_prime_utr;Parent=Msa0691740-mRNA-1
Gene Sequence

>Msa0691740

ATGACTTTAATGGCTCAATTATTGTCACCACTATACACAGAAGCTCTAAAAATCCACAACCCATCACTGAATTTGTGTCGTAGAAGCTCATGGCAGATGCTACAACAAAAAACTGCAACTAGTCCATGGAGATTTGCAACACCAAGTTGCAAACGAAGAGGTTTTGGTAGAGTAAAAGTTGCTACTGATCAGGAATCATTTTCAACCAGTGACAGTGTTGGAGCTGAAGACTATTATGCAGTTTTGGGTCTGCTTCCAGATGCAACACCGGAGCAGATCAAGAAGGCATACTACAATTGTATGAAAACATGCCACCCGGATTTGAGTGGCAACGATCCCGAGACCACAAATTTCTGCACCTTCATTAATGAAGTCTATGAGGTGCTCAGTGATCCAGTTCAGCGCAGGGTTTATGATGATATTCATGGCTATTCTTTGACATCAATCAATCCTTTCATGGACGATTCTAGTCCAAAGGATCATGTTTTCGTCGATGAATTCAGCTGCATAGGCTGCAAAAACTGTGCCAATGTTGCCTGTGATGTGTTTGGAATTGAAGAAGACTTTGGAAGAGCCAGAGTATACAATCAGTTTGGGAACCCTGAATTAATTCAAACGGCTATTGAAAGTTGCCCTGTTGACTGCATTCATTGGACATCAGCTGCACAACTATCATTACTTGAAGACGAAATGCGCCGTATAGAAAGAGTCAATGTTGCTCTAATGCTTTCAGGAATGGGATCAGCATTAGGCGATGTTTTCAGAATGGAACAAGCGAGGTCGAGAATGATGAAGCAGAAAGGTTATGATAAAACAAATTCATACTGGGACAATCTTCGCGGAAAACCAAGAGACTACGAAAATTCAGAGGAGGAAGTAAAAGAAAGAGCTAAAAGAGCTGCAGCTGCTGCTAGAAAATGGAGGGAATACTCAAGGAAGGGTGGTGCTGTTAAGCCTTCCACAGTCAAACTTCCAGAGGAAACCTCTTCCACCAAGGACTAA

Protein sequence

>Msa0691740

MTLMAQLLSPLYTEALKIHNPSLNLCRRSSWQMLQQKTATSPWRFATPSCKRRGFGRVKVATDQESFSTSDSVGAEDYYAVLGLLPDATPEQIKKAYYNCMKTCHPDLSGNDPETTNFCTFINEVYEVLSDPVQRRVYDDIHGYSLTSINPFMDDSSPKDHVFVDEFSCIGCKNCANVACDVFGIEEDFGRARVYNQFGNPELIQTAIESCPVDCIHWTSAAQLSLLEDEMRRIERVNVALMLSGMGSALGDVFRMEQARSRMMKQKGYDKTNSYWDNLRGKPRDYENSEEEVKERAKRAAAAARKWREYSRKGGAVKPSTVKLPEETSSTKD*