AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647480 MtrunA17_Chr4g0038651 99.104 558 5 0 1 558 1 558 0.0 1145
Msa0647480 MtrunA17_Chr7g0240501 60.890 427 156 6 85 506 182 602 3.90e-176 512
Msa0647480 MtrunA17_Chr3g0112731 57.991 438 169 5 82 513 95 523 3.46e-175 508
Msa0647480 MtrunA17_Chr5g0436141 57.895 418 165 4 89 503 84 493 1.31e-167 488
Msa0647480 MtrunA17_Chr4g0008771 62.264 371 134 2 85 453 94 460 8.12e-160 466
Msa0647480 MtrunA17_Chr4g0004771 55.769 364 142 5 87 449 90 435 4.35e-140 416
Msa0647480 MtrunA17_Chr8g0348921 54.145 386 156 6 82 452 90 469 6.34e-138 408
Msa0647480 MtrunA17_Chr2g0331631 50.754 398 178 6 68 464 68 448 2.68e-133 398
Msa0647480 MtrunA17_Chr6g0485861 50.886 395 174 6 86 479 95 470 5.17e-132 395
Msa0647480 MtrunA17_Chr7g0247761 49.176 425 154 5 83 451 109 527 6.56e-127 382
Msa0647480 MtrunA17_Chr5g0408591 47.107 363 184 3 86 448 117 471 1.88e-111 343
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647480 AT4G38430.1 70.123 569 138 13 1 558 1 548 0.0 742
Msa0647480 AT5G05940.1 57.143 448 179 6 81 518 96 540 4.93e-178 516
Msa0647480 AT5G02010.1 60.621 419 152 6 80 496 63 470 1.69e-177 512
Msa0647480 AT5G05940.2 61.290 341 126 2 81 416 96 435 2.67e-150 441
Msa0647480 AT3G55660.1 52.740 438 180 8 84 502 104 533 3.96e-148 438
Msa0647480 AT4G00460.2 55.764 373 152 6 87 452 104 470 4.42e-140 414
Msa0647480 AT4G00460.4 55.764 373 152 6 87 452 104 470 4.42e-140 414
Msa0647480 AT1G01700.1 54.301 372 159 5 87 452 116 482 2.47e-132 395
Msa0647480 AT4G13240.1 51.832 382 165 6 80 459 67 431 2.24e-130 391
Msa0647480 AT1G52240.1 55.096 363 140 6 88 448 105 446 6.70e-129 388
Msa0647480 AT3G24620.1 53.168 363 152 5 87 448 85 430 9.96e-129 387
Msa0647480 AT1G79860.1 52.329 365 155 7 85 448 90 436 1.71e-128 386
Msa0647480 AT3G55660.2 55.425 341 137 5 84 416 104 437 1.81e-128 383
Msa0647480 AT1G01700.4 50.249 402 159 6 87 452 116 512 7.22e-126 379
Msa0647480 AT5G19560.1 51.220 369 164 7 86 453 43 396 1.52e-120 365
Msa0647480 AT5G19560.5 51.220 369 164 7 86 453 43 396 1.52e-120 365
Msa0647480 AT2G45890.1 48.404 376 175 7 87 452 93 459 3.88e-120 362
Msa0647480 AT5G19560.4 51.220 369 164 7 86 453 62 415 5.38e-120 364
Msa0647480 AT4G00460.3 52.083 336 148 6 124 452 8 337 9.39e-116 347
Msa0647480 AT3G16130.1 49.176 364 169 5 86 448 89 437 4.85e-115 352
Msa0647480 AT1G01700.3 50.286 350 156 6 87 423 116 460 5.45e-109 334
Msa0647480 AT5G19560.2 49.398 332 152 7 86 416 62 378 2.93e-102 313
Msa0647480 AT1G31650.2 41.644 365 200 5 87 448 108 462 2.68e-96 304
Msa0647480 AT1G31650.1 41.644 365 200 5 87 448 136 490 1.33e-95 303
Msa0647480 AT4G00460.1 58.333 216 87 2 87 299 104 319 3.73e-82 260
Msa0647480 AT5G19560.3 49.097 277 125 7 178 453 5 266 1.54e-80 257
Msa0647480 AT1G01700.5 56.944 216 90 2 87 299 116 331 1.18e-78 252
Msa0647480 AT1G01700.2 56.944 216 90 2 87 299 116 331 1.18e-78 252

Find 205 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCTGAATCTTAAAT+TGG 0.169189 4_3:-53611740 None:intergenic
GATTCTGGCCATTATGTTAA+AGG 0.205615 4_3:-53610938 None:intergenic
TCTAGAACTCAGTCTCTTTC+TGG 0.210377 4_3:-53611300 None:intergenic
GATTGTGTTGGGTGATTCTA+AGG 0.220759 4_3:+53609480 Msa0647480:CDS
ATAAGAGAAAATGAAATAAA+TGG 0.228648 4_3:-53607799 None:intergenic
CAAATTGCTATGTAGAGTTT+TGG 0.254500 4_3:+53611708 Msa0647480:three_prime_UTR
CCATGGCAGCCTTAAGTATC+TGG 0.261590 4_3:-53609633 None:intergenic
CGACTGTGTTTGGTGAATTA+TGG 0.265683 4_3:+53609200 Msa0647480:CDS
GATTCAAAAGAAATACATTA+TGG 0.273300 4_3:+53611851 Msa0647480:three_prime_UTR
ATAGATACTAAGTGCCTCTT+TGG 0.277965 4_3:-53611464 None:intergenic
CGAAGCCAACTTTCCGGCCT+TGG 0.278677 4_3:-53611211 None:intergenic
AGCTTGAAACGCCGATTTCC+TGG 0.282493 4_3:+53610341 Msa0647480:CDS
ATCAGTCGAAGCCAACTTTC+CGG 0.286787 4_3:-53611217 None:intergenic
TTGTTCAGCAGGGGAGGTTT+TGG 0.291008 4_3:+53611018 Msa0647480:CDS
TAGTTCTGTTCTTGCTGAAA+TGG 0.305090 4_3:+53609663 Msa0647480:CDS
GGGGAAAGCCAGACGGTCTT+GGG 0.310784 4_3:+53610241 Msa0647480:CDS
CCTTCTGTGCAACAATTTCC+AGG 0.323902 4_3:+53609316 Msa0647480:CDS
AACCCATTTGGTGGAAGCTT+TGG 0.329873 4_3:-53609562 None:intergenic
TAGAGAGGGCCGTTCATCTT+TGG 0.330682 4_3:+53611512 Msa0647480:three_prime_UTR
CGGGGAAAGCCAGACGGTCT+TGG 0.332922 4_3:+53610240 Msa0647480:CDS
GAGCTTAGCCTTTAACATAA+TGG 0.342778 4_3:+53610930 Msa0647480:CDS
CGCCGCTCATTTCAACTTGC+CGG 0.344030 4_3:+53608049 Msa0647480:CDS
TCTAAGGATTGTGATGATTA+TGG 0.346046 4_3:+53609496 Msa0647480:CDS
TTAATTTGGTAACGCACATT+TGG 0.347361 4_3:-53607840 None:intergenic
GATATGTCTGGTGGTGGAAA+AGG 0.352459 4_3:+53608850 Msa0647480:CDS
TACCTTATTATACTGTATCT+TGG 0.354569 4_3:-53610390 None:intergenic
GGCCAAGATACAGTATAATA+AGG 0.358263 4_3:+53610388 Msa0647480:CDS
TGGGAAAGATGTTGCTGTTT+GGG 0.363508 4_3:+53608103 Msa0647480:CDS
TTGCCGCAAGTTTGCAAAAC+GGG 0.372103 4_3:-53611347 None:intergenic
AGCAATGTGGCGTAGGGAAA+TGG 0.382299 4_3:+53609252 Msa0647480:CDS
TCTCCAAAGCTTCCACCAAA+TGG 0.384270 4_3:+53609559 Msa0647480:CDS
AAAATTACACCCTCATATAC+AGG 0.387419 4_3:-53611559 None:intergenic
AACACATTGAGACGCACGTT+TGG 0.387708 4_3:+53611425 Msa0647480:three_prime_UTR
TGTACCATTCCCTGTATATG+AGG 0.388484 4_3:+53611549 Msa0647480:three_prime_UTR
ATATGTCTGGTGGTGGAAAA+GGG 0.392050 4_3:+53608851 Msa0647480:CDS
TAATTTGGTAACGCACATTT+GGG 0.399094 4_3:-53607839 None:intergenic
CTCAGCGCAAGAAGAAATTC+TGG 0.399210 4_3:+53611270 Msa0647480:CDS
TGTTCCTCCTCTCCTGTTAG+TGG 0.400070 4_3:+53611129 Msa0647480:CDS
TACTAAGTGCCTCTTTGGTT+TGG 0.400178 4_3:-53611459 None:intergenic
CTATTCTTGAAAGTTATTCC+AGG 0.402654 4_3:+53610899 Msa0647480:CDS
TCCTCAAACAGCGCTAGATA+TGG 0.409212 4_3:+53610367 Msa0647480:CDS
CTGCAAGGACTCCCACTAAC+AGG 0.411730 4_3:-53611141 None:intergenic
GTGGGAAAGATGTTGCTGTT+TGG 0.414429 4_3:+53608102 Msa0647480:CDS
ATAAAGGACATCATCGATTC+TGG 0.415180 4_3:-53610953 None:intergenic
CTTTCCACCCCAAGACCGTC+TGG 0.421418 4_3:-53610249 None:intergenic
GACGGCGCAGGCTATGCTTC+CGG 0.425048 4_3:+53608073 Msa0647480:CDS
TTCTAGAGTTGGCATGTGTT+TGG 0.426356 4_3:+53611316 Msa0647480:three_prime_UTR
TAAGAGAAAATGAAATAAAT+GGG 0.430598 4_3:-53607798 None:intergenic
AGCTTCTCTATTTCCACGTC+AGG 0.431442 4_3:+53611402 Msa0647480:three_prime_UTR
CAGATTCTATCTTGTTCAGC+AGG 0.433813 4_3:+53611007 Msa0647480:CDS
TTATAGTATCGTCTACATAA+AGG 0.435898 4_3:-53610969 None:intergenic
CCTGCATTGAAGAAGCTTGA+CGG 0.436172 4_3:+53609397 Msa0647480:CDS
CTCTGTCAGTGTTGTTGTTG+AGG 0.439826 4_3:-53607670 None:intergenic
ACACATTGAGACGCACGTTT+GGG 0.441992 4_3:+53611426 Msa0647480:three_prime_UTR
TTTGAGGAAGCCCAGGAAAT+CGG 0.442800 4_3:-53610352 None:intergenic
AGCTGAGCTGGAAGCTCCTT+CGG 0.443051 4_3:-53608006 None:intergenic
CTCCAAAGCTTCCACCAAAT+GGG 0.444467 4_3:+53609560 Msa0647480:CDS
AGCATAGCCTGCGCCGTCGC+CGG 0.445981 4_3:-53608068 None:intergenic
TTGGGATCACAAACGTGACT+TGG 0.452605 4_3:+53608121 Msa0647480:CDS
ATGGGTTGTGTGAGGATGAT+AGG 0.453326 4_3:+53609578 Msa0647480:CDS
TCATCCTCACACAACCCATT+TGG 0.456886 4_3:-53609574 None:intergenic
TGCAGAAGTTGAAATGATGA+AGG 0.459359 4_3:+53608798 Msa0647480:intron
AGAATGGTAAAGCTTGTCTT+GGG 0.459633 4_3:+53610057 Msa0647480:intron
GTAGCAAAAGGAGAGGCATA+TGG 0.460266 4_3:-53611096 None:intergenic
GAACCACTTTCTTGTCCAAC+GGG 0.461497 4_3:+53610301 Msa0647480:CDS
GTAATTGCAGCGACTGTGTT+TGG 0.462379 4_3:+53609190 Msa0647480:intron
TGAATGTCTTCTTGACTGCC+TGG 0.463418 4_3:+53610121 Msa0647480:CDS
CTGTTAGGCAAGAAGAGAAA+TGG 0.465548 4_3:+53609527 Msa0647480:CDS
TCATTTCAACTTGCCGGCGA+CGG 0.465724 4_3:+53608055 Msa0647480:CDS
CAACTTGCCGGCGACGGCGC+AGG 0.470587 4_3:+53608061 Msa0647480:CDS
CAGAATGGTAAAGCTTGTCT+TGG 0.471373 4_3:+53610056 Msa0647480:intron
CAGGCTATGCTTCCGGTCAT+CGG 0.475533 4_3:+53608080 Msa0647480:CDS
GAAAGTTCTAGCAGCTTCTA+CGG 0.475680 4_3:+53607969 Msa0647480:CDS
GTTGATAGAGGGATTGTGTT+GGG 0.477945 4_3:+53609469 Msa0647480:CDS
ATTATGGTAGACCTTCTGTT+AGG 0.480466 4_3:+53609512 Msa0647480:CDS
TGTTGAATTGAGAAGGGGCT+GGG 0.481257 4_3:-53611069 None:intergenic
CCGTCAAGCTTCTTCAATGC+AGG 0.482835 4_3:-53609397 None:intergenic
TGAAAGTTATTCCAGGGTGA+TGG 0.483592 4_3:+53610906 Msa0647480:CDS
GTTCCTCCTCTCCTGTTAGT+GGG 0.489622 4_3:+53611130 Msa0647480:CDS
GTGCAACAATTTCCAGGTGG+TGG 0.490405 4_3:+53609322 Msa0647480:CDS
TGGCGAGAGATTAGCTGAGC+TGG 0.492120 4_3:-53608018 None:intergenic
GCCATATCTAGCGCTGTTTG+AGG 0.492418 4_3:-53610368 None:intergenic
AGATTCCAAGGCCGGAAAGT+TGG 0.493306 4_3:+53611206 Msa0647480:CDS
GTTTGGTGAATTATGGAGGT+TGG 0.496317 4_3:+53609207 Msa0647480:CDS
CCTGGAAATTGTTGCACAGA+AGG 0.500430 4_3:-53609316 None:intergenic
CAGAATTTCTTCTTGCGCTG+AGG 0.503230 4_3:-53611269 None:intergenic
TGTGTAGGCGTCATTGACTA+TGG 0.503238 4_3:-53611786 None:intergenic
TTGAGGCTGCTATACATGTA+TGG 0.504433 4_3:+53610186 Msa0647480:CDS
TAGCAAAAGGAGAGGCATAT+GGG 0.505390 4_3:-53611095 None:intergenic
GTGTTGAATTGAGAAGGGGC+TGG 0.507650 4_3:-53611070 None:intergenic
GTACCATTCCCTGTATATGA+GGG 0.509025 4_3:+53611550 Msa0647480:three_prime_UTR
GCTTGAAACGCCGATTTCCT+GGG 0.512807 4_3:+53610342 Msa0647480:CDS
TTCTCTTCTTGCCTAACAGA+AGG 0.513322 4_3:-53609523 None:intergenic
CGGAATGCTGCTAAGTATGT+TGG 0.515803 4_3:+53609417 Msa0647480:CDS
GGAGAGGATATGTCTGGTGG+TGG 0.518827 4_3:+53608844 Msa0647480:CDS
CTAATGCTGAATCTTAAATT+GGG 0.519098 4_3:-53611739 None:intergenic
CGACTGATTATGAGAAGGTA+TGG 0.520176 4_3:+53611232 Msa0647480:CDS
CAGAACGAAGGAGTAGCAAA+AGG 0.523441 4_3:-53611108 None:intergenic
CTATGGCAGTAAGGACATAA+TGG 0.524949 4_3:-53611769 None:intergenic
TTGTACAAACCAGATACTTA+AGG 0.526700 4_3:+53609624 Msa0647480:CDS
TCCTCACACAACCCATTTGG+TGG 0.531504 4_3:-53609571 None:intergenic
AACGCCATCACGAATCTCTC+CGG 0.532591 4_3:+53608898 Msa0647480:CDS
GCAGTAGTGTCTCTGCCCGT+TGG 0.535109 4_3:-53610316 None:intergenic
TATGTCTGGTGGTGGAAAAG+GGG 0.535150 4_3:+53608852 Msa0647480:CDS
TGCTGCTAAGTATGTTGGAT+GGG 0.536146 4_3:+53609422 Msa0647480:CDS
TGACGTGGAAATAGAGAAGC+TGG 0.538221 4_3:-53611400 None:intergenic
ACATCTTTCCCACCGATGAC+CGG 0.539491 4_3:-53608092 None:intergenic
AAACGTGACTTGGATTTGAC+CGG 0.539763 4_3:+53608131 Msa0647480:CDS
ATATACCGGTACATAACTGC+TGG 0.541260 4_3:+53610086 Msa0647480:CDS
GGGGTGTGTTGAATTGAGAA+GGG 0.542741 4_3:-53611075 None:intergenic
CGTCATTGACTATGGCAGTA+AGG 0.544352 4_3:-53611778 None:intergenic
ATTGCCGCAAGTTTGCAAAA+CGG 0.546354 4_3:-53611348 None:intergenic
TGTGGACCTGTGGAGTATAG+TGG 0.548211 4_3:-53607647 None:intergenic
GAGTGCTGACATCAGCGAAT+CGG 0.550570 4_3:+53607947 Msa0647480:CDS
AAGGGTAAAGATTCCAAGGC+CGG 0.550775 4_3:+53611198 Msa0647480:CDS
TATTCTTGAAAGTTATTCCA+GGG 0.551588 4_3:+53610900 Msa0647480:CDS
AAGGATTCAACATAAGCAGC+AGG 0.553157 4_3:-53609691 None:intergenic
CTATTAACTTTAATCTAGAG+AGG 0.553768 4_3:+53611497 Msa0647480:three_prime_UTR
ACTTCATAAGTTCCACCACC+TGG 0.555405 4_3:-53609334 None:intergenic
GCTATGCTTCCGGTCATCGG+TGG 0.557617 4_3:+53608083 Msa0647480:CDS
AAATGAGCGGCGAGCTGACG+TGG 0.558695 4_3:-53608038 None:intergenic
CCAGATACTTAAGGCTGCCA+TGG 0.558712 4_3:+53609633 Msa0647480:CDS
TCTATCTTGTTCAGCAGGGG+AGG 0.559447 4_3:+53611012 Msa0647480:CDS
TCAGTGTTGTTGTTGAGGTG+TGG 0.563762 4_3:-53607665 None:intergenic
AAGCATTATTACCCTTGGCA+AGG 0.564336 4_3:-53609710 None:intergenic
TGGTGGAACTTATGAAGTAA+TGG 0.566731 4_3:+53609339 Msa0647480:CDS
GGTAACGCACATTTGGGTAA+CGG 0.567797 4_3:-53607833 None:intergenic
AGCGCTGTTTGAGGAAGCCC+AGG 0.567802 4_3:-53610359 None:intergenic
TGGGGTGTGTTGAATTGAGA+AGG 0.569446 4_3:-53611076 None:intergenic
ATTTGAAGGCATACCTGTGT+AGG 0.569765 4_3:-53611801 None:intergenic
TATTCGTAGGCAATATGAGT+AGG 0.573733 4_3:+53611586 Msa0647480:three_prime_UTR
CTCCTTCGGCGTCGAAACGT+CGG 0.574174 4_3:-53607992 None:intergenic
AACAGAACTATTAATCGCCA+TGG 0.575102 4_3:-53609650 None:intergenic
GTCTTGGGGATATAATATAC+CGG 0.575804 4_3:+53610072 Msa0647480:CDS
AAAGCCAGACGGTCTTGGGG+TGG 0.577009 4_3:+53610245 Msa0647480:CDS
ACACCCTCATATACAGGGAA+TGG 0.577332 4_3:-53611553 None:intergenic
ATAAAGCTTTCATGTTAACA+TGG 0.577730 4_3:-53611374 None:intergenic
GTTGTTGAGGTGTGGACCTG+TGG 0.578794 4_3:-53607657 None:intergenic
AGAACCACTTTCTTGTCCAA+CGG 0.580288 4_3:+53610300 Msa0647480:CDS
TGTGTCCTGCGTGGACTGCA+AGG 0.582733 4_3:-53611156 None:intergenic
TGTTGATAGAGGGATTGTGT+TGG 0.583213 4_3:+53609468 Msa0647480:CDS
TAAAGCTTTCATGTTAACAT+GGG 0.584419 4_3:-53611373 None:intergenic
CTGTGTTTGGTGAATTATGG+AGG 0.584849 4_3:+53609203 Msa0647480:CDS
CTGCCCGTTGGACAAGAAAG+TGG 0.585462 4_3:-53610304 None:intergenic
AAGAGACTGAGTTCTAGAGT+TGG 0.586872 4_3:+53611305 Msa0647480:exon
AGATATAGCTAATAGAATTG+AGG 0.588400 4_3:+53610169 Msa0647480:CDS
GAGTTGGCATGTGTTTGGAA+CGG 0.590639 4_3:+53611321 Msa0647480:three_prime_UTR
TTTGGTGGAAGCTTTGGAGA+AGG 0.594961 4_3:-53609556 None:intergenic
TATTAGCTATATCTTGTGTG+TGG 0.596055 4_3:-53610160 None:intergenic
GCAGGACACATGATGTAAAG+AGG 0.599723 4_3:+53611169 Msa0647480:CDS
CAGACGGTCTTGGGGTGGAA+AGG 0.600589 4_3:+53610250 Msa0647480:CDS
CTTATGTTGAATCCTTGCCA+AGG 0.600693 4_3:+53609698 Msa0647480:CDS
AGATTCTATCTTGTTCAGCA+GGG 0.601015 4_3:+53611008 Msa0647480:CDS
GAGTGATTCAATAGTCGAGT+TGG 0.601610 4_3:+53609291 Msa0647480:CDS
GGGAAAGCCAGACGGTCTTG+GGG 0.602570 4_3:+53610242 Msa0647480:CDS
GGCCGACGTTTCGACGCCGA+AGG 0.603179 4_3:+53607990 Msa0647480:CDS
CTATGCTTCCGGTCATCGGT+GGG 0.603684 4_3:+53608084 Msa0647480:CDS
CATTGAGACGCACGTTTGGG+TGG 0.604175 4_3:+53611429 Msa0647480:three_prime_UTR
TTAGGAGAGGATATGTCTGG+TGG 0.604883 4_3:+53608841 Msa0647480:CDS
GGTGCTCAGATGATAAATCC+AGG 0.607693 4_3:-53610139 None:intergenic
ATGCTGCTAAGTATGTTGGA+TGG 0.608493 4_3:+53609421 Msa0647480:CDS
TATTAACTTTAATCTAGAGA+GGG 0.610000 4_3:+53611498 Msa0647480:three_prime_UTR
TGGCAAGGGTAAAGATTCCA+AGG 0.610500 4_3:+53611194 Msa0647480:CDS
AGAAATGGGAAGTGTTTCGT+CGG 0.610958 4_3:+53607890 Msa0647480:exon
GGCTAAGCTCTCCATCACCC+TGG 0.611779 4_3:-53610917 None:intergenic
GGCTTCGACTGATTATGAGA+AGG 0.612301 4_3:+53611227 Msa0647480:CDS
TTATGTTGAATCCTTGCCAA+GGG 0.615016 4_3:+53609699 Msa0647480:CDS
GATTCTATCTTGTTCAGCAG+GGG 0.618909 4_3:+53611009 Msa0647480:CDS
ACACATGATGTAAAGAGGAA+TGG 0.620963 4_3:+53611174 Msa0647480:CDS
TGATGTAAAGAGGAATGGCA+AGG 0.621154 4_3:+53611179 Msa0647480:CDS
ACTGACCAGCAGTTATGTAC+CGG 0.623263 4_3:-53610091 None:intergenic
GTCTCAATGTGTTCCTGACG+TGG 0.623749 4_3:-53611415 None:intergenic
CGCAAGAAGAAATTCTGGCG+AGG 0.629857 4_3:+53611275 Msa0647480:CDS
TCTTCTCACCATCAGCAACA+AGG 0.630373 4_3:-53610280 None:intergenic
GTAAAGAGCCTTGTTGCTGA+TGG 0.632308 4_3:+53610272 Msa0647480:CDS
GGGTGTGTTGAATTGAGAAG+GGG 0.632385 4_3:-53611074 None:intergenic
AGCAAAAGGAGAGGCATATG+GGG 0.632893 4_3:-53611094 None:intergenic
GATGTAAAGAGGAATGGCAA+GGG 0.633745 4_3:+53611180 Msa0647480:CDS
TCACCACCACTATACTCCAC+AGG 0.634580 4_3:+53607641 None:intergenic
GATTCGCTGATGTCAGCACT+CGG 0.634852 4_3:-53607945 None:intergenic
GGAGTCCTTGCAGTCCACGC+AGG 0.635954 4_3:+53611151 Msa0647480:CDS
ATAGTCAATGACGCCTACAC+AGG 0.642514 4_3:+53611788 Msa0647480:three_prime_UTR
CGCCGGCAAGTTGAAATGAG+CGG 0.644525 4_3:-53608051 None:intergenic
TGTGTGAGGATGATAGGAAA+AGG 0.644810 4_3:+53609584 Msa0647480:CDS
ACTCCCACTAACAGGAGAGG+AGG 0.651034 4_3:-53611133 None:intergenic
CGAAGGAGTAGCAAAAGGAG+AGG 0.653019 4_3:-53611103 None:intergenic
TTAGGCAAGAAGAGAAATGG+TGG 0.655462 4_3:+53609530 Msa0647480:CDS
TTTACATCATGTGTCCTGCG+TGG 0.655545 4_3:-53611165 None:intergenic
TGTGGCGTAGGGAAATGGAA+TGG 0.660140 4_3:+53609257 Msa0647480:CDS
ACTAGATAACCAAAGATGAA+CGG 0.662357 4_3:-53611521 None:intergenic
GGAGAGGAGGAACAGAACGA+AGG 0.664755 4_3:-53611120 None:intergenic
GGACCTGTGGAGTATAGTGG+TGG 0.667940 4_3:-53607644 None:intergenic
GGTAGACTGCCAAACCAAAG+AGG 0.668978 4_3:+53611450 Msa0647480:three_prime_UTR
AAATTACACCCTCATATACA+GGG 0.669557 4_3:-53611558 None:intergenic
GAGAAGGTATGGTCATACGC+AGG 0.673120 4_3:+53611243 Msa0647480:CDS
GAATGGTAAAGCTTGTCTTG+GGG 0.676070 4_3:+53610058 Msa0647480:intron
AGGACTCCCACTAACAGGAG+AGG 0.681765 4_3:-53611136 None:intergenic
AGTAAGGACATAATGGCACA+TGG 0.682072 4_3:-53611762 None:intergenic
TCCACCAAATGGGTTGTGTG+AGG 0.688832 4_3:+53609570 Msa0647480:CDS
CTAACCGGAGAGATTCGTGA+TGG 0.691477 4_3:-53608902 None:intergenic
TCTGTGCAACAATTTCCAGG+TGG 0.694742 4_3:+53609319 Msa0647480:CDS
GAAGATGTTTCAGAGCGATG+TGG 0.696488 4_3:+53607912 Msa0647480:CDS
TTGATGTACAAATCAGAGCG+AGG 0.697670 4_3:-53609370 None:intergenic
CTTATGAAGTAATGGCAACG+CGG 0.715804 4_3:+53609347 Msa0647480:CDS
AGGCTGCTATACATGTATGG+AGG 0.750304 4_3:+53610189 Msa0647480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATTTTTTTATTTGT+GGG - chr4_3:53608359-53608378 None:intergenic 10.0%
!!! AAAATGTTTATAGAAATTTT+GGG - chr4_3:53608392-53608411 None:intergenic 10.0%
!!! AAAAATGTTTATAGAAATTT+TGG - chr4_3:53608393-53608412 None:intergenic 10.0%
!!! GTAAAAAATATTTTTTTTTG+GGG - chr4_3:53608445-53608464 None:intergenic 10.0%
!!! GGTAAAAAATATTTTTTTTT+GGG - chr4_3:53608446-53608465 None:intergenic 10.0%
!! TAAGAGAAAATGAAATAAAT+GGG - chr4_3:53607801-53607820 None:intergenic 15.0%
!! ATAAGAGAAAATGAAATAAA+TGG - chr4_3:53607802-53607821 None:intergenic 15.0%
!!! CTTTTTGATTTTTTTATTTG+TGG - chr4_3:53608360-53608379 None:intergenic 15.0%
!!! AAATGTTTATAGAAATTTTG+GGG - chr4_3:53608391-53608410 None:intergenic 15.0%
!!! CGGTAAAAAATATTTTTTTT+TGG - chr4_3:53608447-53608466 None:intergenic 15.0%
!!! TTTACGGTAAAAAATTTTTT+CGG - chr4_3:53608467-53608486 None:intergenic 15.0%
!!! TTTTACGGTAATTTTTTTTA+CGG - chr4_3:53608550-53608569 None:intergenic 15.0%
!! TATAAAATCAACTTATTTGT+GGG - chr4_3:53608647-53608666 None:intergenic 15.0%
!!! AAATAAGTTGATTTTATAGT+GGG + chr4_3:53608649-53608668 Msa0647480:intron 15.0%
!! TAATTGAACAAAATTATTTG+GGG - chr4_3:53608680-53608699 None:intergenic 15.0%
!! CTAATTGAACAAAATTATTT+GGG - chr4_3:53608681-53608700 None:intergenic 15.0%
!!! CAAATAATTTTGTTCAATTA+GGG + chr4_3:53608680-53608699 Msa0647480:intron 15.0%
!!! AAATAATTTTGTTCAATTAG+GGG + chr4_3:53608681-53608700 Msa0647480:intron 15.0%
!!! AATTTTTTTCCTTCTAAAAT+TGG + chr4_3:53609997-53610016 Msa0647480:intron 15.0%
!! CTATAAGAAACTTAAAAAAT+CGG + chr4_3:53610220-53610239 Msa0647480:CDS 15.0%
!! TATAAGAAACTTAAAAAATC+GGG + chr4_3:53610221-53610240 Msa0647480:CDS 15.0%
!!! ATTTCTTTTGAATCAAAATA+TGG - chr4_3:53611845-53611864 None:intergenic 15.0%
!!! ATTTTACACAGATCTTAATT+TGG - chr4_3:53607857-53607876 None:intergenic 20.0%
!! TGAAAATTCACAAAACAAAA+AGG + chr4_3:53608317-53608336 Msa0647480:intron 20.0%
!!! GGGGTAAAAAAAAAATTTTA+CGG - chr4_3:53608565-53608584 None:intergenic 20.0%
!!! TTTTTTGGGTAAAAAAATTC+CGG - chr4_3:53608602-53608621 None:intergenic 20.0%
!! TTTACCCAAAAAAATTAATG+TGG + chr4_3:53608609-53608628 Msa0647480:intron 20.0%
!! TTACCCAAAAAAATTAATGT+GGG + chr4_3:53608610-53608629 Msa0647480:intron 20.0%
!! CTATAAAATCAACTTATTTG+TGG - chr4_3:53608648-53608667 None:intergenic 20.0%
!!! CAAATAAGTTGATTTTATAG+TGG + chr4_3:53608648-53608667 Msa0647480:intron 20.0%
!! CCTAATTGAACAAAATTATT+TGG - chr4_3:53608682-53608701 None:intergenic 20.0%
!!! CCAAATAATTTTGTTCAATT+AGG + chr4_3:53608679-53608698 Msa0647480:intron 20.0%
!!! TGTAATTTTTGCATATTATG+TGG + chr4_3:53609879-53609898 Msa0647480:intron 20.0%
!!! TTATTAAAGTTTTTGAACCA+TGG - chr4_3:53609930-53609949 None:intergenic 20.0%
!! AAAACTTTAATAAGCTGAAA+TGG + chr4_3:53609937-53609956 Msa0647480:intron 20.0%
!! TTCAAAAATGGTTTAGTATT+TGG + chr4_3:53609962-53609981 Msa0647480:intron 20.0%
!! ATAAGAAACTTAAAAAATCG+GGG + chr4_3:53610222-53610241 Msa0647480:CDS 20.0%
!!! TTTTTTATTTGTTTTTGCTG+AGG + chr4_3:53610667-53610686 Msa0647480:intron 20.0%
!! GAAAATACTATTCATATGTT+AGG - chr4_3:53610711-53610730 None:intergenic 20.0%
!! ACAATGATCAATCATTATTA+CGG - chr4_3:53610747-53610766 None:intergenic 20.0%
!! AATCAAAGAATAAACTCATT+TGG + chr4_3:53610844-53610863 Msa0647480:intron 20.0%
!! TATTAACTTTAATCTAGAGA+GGG + chr4_3:53611498-53611517 Msa0647480:three_prime_UTR 20.0%
!!! TGTAATTTTTGTATATTCGT+AGG + chr4_3:53611573-53611592 Msa0647480:three_prime_UTR 20.0%
!!! ATTTTTAATTGATGATCCAA+GGG - chr4_3:53611631-53611650 None:intergenic 20.0%
!!! TCCTTTCAAGTATAAATTTT+TGG + chr4_3:53611654-53611673 Msa0647480:three_prime_UTR 20.0%
!! TCCAAAAATTTATACTTGAA+AGG - chr4_3:53611658-53611677 None:intergenic 20.0%
!!! TTTCAAGTATAAATTTTTGG+AGG + chr4_3:53611657-53611676 Msa0647480:three_prime_UTR 20.0%
!!! TTTTGAGACTTAAAATTTGA+AGG - chr4_3:53611818-53611837 None:intergenic 20.0%
!! GATTCAAAAGAAATACATTA+TGG + chr4_3:53611851-53611870 Msa0647480:three_prime_UTR 20.0%
!!! ATTTTGCTGTTGTAAAGAAA+TGG + chr4_3:53607875-53607894 Msa0647480:exon 25.0%
!!! TTTTGCTGTTGTAAAGAAAT+GGG + chr4_3:53607876-53607895 Msa0647480:exon 25.0%
!!! TTCTGGGGTAAAAAAATTTA+CGG - chr4_3:53608483-53608502 None:intergenic 25.0%
!!! AATCCGGTAAAATTTTTTCT+GGG - chr4_3:53608499-53608518 None:intergenic 25.0%
!!! AAATCCGGTAAAATTTTTTC+TGG - chr4_3:53608500-53608519 None:intergenic 25.0%
!!! TTTTTGGGGTAAAAAAAATC+CGG - chr4_3:53608515-53608534 None:intergenic 25.0%
!!! GGTACAAAACTTTTTTTTTG+GGG - chr4_3:53608529-53608548 None:intergenic 25.0%
!!! CGGTACAAAACTTTTTTTTT+GGG - chr4_3:53608530-53608549 None:intergenic 25.0%
!!! ACGGTACAAAACTTTTTTTT+TGG - chr4_3:53608531-53608550 None:intergenic 25.0%
!!! ATTCCGGTAAATTTTTTTTG+CGG - chr4_3:53608586-53608605 None:intergenic 25.0%
!!! AAGCCCACATTAATTTTTTT+GGG - chr4_3:53608616-53608635 None:intergenic 25.0%
!!! AAAGCCCACATTAATTTTTT+TGG - chr4_3:53608617-53608636 None:intergenic 25.0%
!!! AATTAATGTGGGCTTTTTTT+AGG + chr4_3:53608621-53608640 Msa0647480:intron 25.0%
! TAGCAAAAAAACAAACTAAC+CGG - chr4_3:53608920-53608939 None:intergenic 25.0%
! ATGATTATATCGTGTTACAA+TGG + chr4_3:53609804-53609823 Msa0647480:intron 25.0%
!! AGTTTTCATCCAATTTTAGA+AGG - chr4_3:53610009-53610028 None:intergenic 25.0%
!! GAAAACTTAAAATGCCTTTT+TGG + chr4_3:53610022-53610041 Msa0647480:intron 25.0%
! AGATATAGCTAATAGAATTG+AGG + chr4_3:53610169-53610188 Msa0647480:CDS 25.0%
! TACCTTATTATACTGTATCT+TGG - chr4_3:53610393-53610412 None:intergenic 25.0%
! TTTAGCAAAAGATATAATCC+TGG + chr4_3:53610581-53610600 Msa0647480:intron 25.0%
! AAAATTCTCTCACAAAATAC+AGG - chr4_3:53610642-53610661 None:intergenic 25.0%
! TATTCTTGAAAGTTATTCCA+GGG + chr4_3:53610900-53610919 Msa0647480:CDS 25.0%
! TTATAGTATCGTCTACATAA+AGG - chr4_3:53610972-53610991 None:intergenic 25.0%
! TAAAGCTTTCATGTTAACAT+GGG - chr4_3:53611376-53611395 None:intergenic 25.0%
! ATAAAGCTTTCATGTTAACA+TGG - chr4_3:53611377-53611396 None:intergenic 25.0%
! CTATTAACTTTAATCTAGAG+AGG + chr4_3:53611497-53611516 Msa0647480:three_prime_UTR 25.0%
!!! CATTTTTAATTGATGATCCA+AGG - chr4_3:53611632-53611651 None:intergenic 25.0%
! TTTATAGAAAAACACCATGT+GGG - chr4_3:53611686-53611705 None:intergenic 25.0%
! ATTTATAGAAAAACACCATG+TGG - chr4_3:53611687-53611706 None:intergenic 25.0%
! CTAATGCTGAATCTTAAATT+GGG - chr4_3:53611742-53611761 None:intergenic 25.0%
ACAAAGAAAAAGAATGTGAG+TGG + chr4_3:53607723-53607742 Msa0647480:five_prime_UTR 30.0%
!! TAATTTGGTAACGCACATTT+GGG - chr4_3:53607842-53607861 None:intergenic 30.0%
!! TTAATTTGGTAACGCACATT+TGG - chr4_3:53607843-53607862 None:intergenic 30.0%
AACATAAAGCCACAATTGTA+CGG - chr4_3:53608188-53608207 None:intergenic 30.0%
!!! TTATAGAAATTTTGGGGCTT+GGG - chr4_3:53608385-53608404 None:intergenic 30.0%
!!! TTTATAGAAATTTTGGGGCT+TGG - chr4_3:53608386-53608405 None:intergenic 30.0%
! TACCCCAGAAAAAATTTTAC+CGG + chr4_3:53608493-53608512 Msa0647480:intron 30.0%
!!! ATCCGGTAAAATTTTTTCTG+GGG - chr4_3:53608498-53608517 None:intergenic 30.0%
!!! TTCCGGTAAATTTTTTTTGC+GGG - chr4_3:53608585-53608604 None:intergenic 30.0%
! AATTAGGGGCTTTAATTTAG+TGG + chr4_3:53608695-53608714 Msa0647480:intron 30.0%
! ATTAGGGGCTTTAATTTAGT+GGG + chr4_3:53608696-53608715 Msa0647480:intron 30.0%
AATTGACAGCTCTATGTTAA+CGG + chr4_3:53608762-53608781 Msa0647480:intron 30.0%
TTCTATGTAATCAGATGTGT+CGG + chr4_3:53609018-53609037 Msa0647480:intron 30.0%
ACATCTTCAATCAACATTGT+CGG + chr4_3:53609069-53609088 Msa0647480:intron 30.0%
!! AGTTTTGGTATGTTGATAGA+GGG + chr4_3:53609458-53609477 Msa0647480:CDS 30.0%
TCTAAGGATTGTGATGATTA+TGG + chr4_3:53609496-53609515 Msa0647480:CDS 30.0%
TTGTACAAACCAGATACTTA+AGG + chr4_3:53609624-53609643 Msa0647480:CDS 30.0%
TAATGCTTTGCTTTGCATAT+AGG + chr4_3:53609725-53609744 Msa0647480:intron 30.0%
TAGGAAATAAACTGTGTTCA+TGG + chr4_3:53609744-53609763 Msa0647480:intron 30.0%
! ACTGTGTTCATGGTTAATTT+TGG + chr4_3:53609754-53609773 Msa0647480:intron 30.0%
! CTGTGTTCATGGTTAATTTT+GGG + chr4_3:53609755-53609774 Msa0647480:intron 30.0%
GAATTGATGTCTGTCTAATA+TGG - chr4_3:53609831-53609850 None:intergenic 30.0%
GCTGAAATGGAATTCAAAAA+TGG + chr4_3:53609950-53609969 Msa0647480:intron 30.0%
TATTAGCTATATCTTGTGTG+TGG - chr4_3:53610163-53610182 None:intergenic 30.0%
! ATTTTCTCGCTCTTAAAGTT+TGG + chr4_3:53610414-53610433 Msa0647480:intron 30.0%
GAAGTGATATGCAGTATATT+AGG + chr4_3:53610506-53610525 Msa0647480:intron 30.0%
AAAAGATATAATCCTGGCAA+CGG + chr4_3:53610587-53610606 Msa0647480:intron 30.0%
TCTGTATGATAAGTTTGTGT+AGG + chr4_3:53610770-53610789 Msa0647480:intron 30.0%
CTATTCTTGAAAGTTATTCC+AGG + chr4_3:53610899-53610918 Msa0647480:CDS 30.0%
ACTAGATAACCAAAGATGAA+CGG - chr4_3:53611524-53611543 None:intergenic 30.0%
AAATTACACCCTCATATACA+GGG - chr4_3:53611561-53611580 None:intergenic 30.0%
AAAATTACACCCTCATATAC+AGG - chr4_3:53611562-53611581 None:intergenic 30.0%
ATGAAGAAAAATTATGCCCT+TGG + chr4_3:53611612-53611631 Msa0647480:three_prime_UTR 30.0%
! CAAATTGCTATGTAGAGTTT+TGG + chr4_3:53611708-53611727 Msa0647480:three_prime_UTR 30.0%
GCTAATGCTGAATCTTAAAT+TGG - chr4_3:53611743-53611762 None:intergenic 30.0%
!!! TATAGAAATTTTGGGGCTTG+GGG - chr4_3:53608384-53608403 None:intergenic 35.0%
ACCCCGCAAAAAAAATTTAC+CGG + chr4_3:53608580-53608599 Msa0647480:intron 35.0%
!!! TCCGGTAAATTTTTTTTGCG+GGG - chr4_3:53608584-53608603 None:intergenic 35.0%
!!! AGTTGATTTTATAGTGGGCT+TGG + chr4_3:53608654-53608673 Msa0647480:intron 35.0%
!! TTTAATTTAGTGGGCTTGGT+GGG + chr4_3:53608705-53608724 Msa0647480:intron 35.0%
!! TTCAAGTGGGCTTTGAAATT+TGG + chr4_3:53608734-53608753 Msa0647480:intron 35.0%
!! TCAAGTGGGCTTTGAAATTT+GGG + chr4_3:53608735-53608754 Msa0647480:intron 35.0%
TGCAGAAGTTGAAATGATGA+AGG + chr4_3:53608798-53608817 Msa0647480:intron 35.0%
GTGTTAGTAACTATGAAGCA+CGG + chr4_3:53608945-53608964 Msa0647480:intron 35.0%
TGGTGGAACTTATGAAGTAA+TGG + chr4_3:53609339-53609358 Msa0647480:CDS 35.0%
!! GGTTTTGTGATACACAGTTT+TGG + chr4_3:53609443-53609462 Msa0647480:CDS 35.0%
!! CAGTTTTGGTATGTTGATAG+AGG + chr4_3:53609457-53609476 Msa0647480:CDS 35.0%
ATTATGGTAGACCTTCTGTT+AGG + chr4_3:53609512-53609531 Msa0647480:CDS 35.0%
AACAGAACTATTAATCGCCA+TGG - chr4_3:53609653-53609672 None:intergenic 35.0%
! TAGTTCTGTTCTTGCTGAAA+TGG + chr4_3:53609663-53609682 Msa0647480:CDS 35.0%
TTATGTTGAATCCTTGCCAA+GGG + chr4_3:53609699-53609718 Msa0647480:CDS 35.0%
! AAGCAAAGCATTATTACCCT+TGG - chr4_3:53609718-53609737 None:intergenic 35.0%
!! GTTCATGGTTAATTTTGGGT+TGG + chr4_3:53609759-53609778 Msa0647480:intron 35.0%
!! GCTGAAATCAGTTTTATCCA+TGG + chr4_3:53609910-53609929 Msa0647480:intron 35.0%
! CTGCATTGGTAAAACCAAAA+AGG - chr4_3:53610039-53610058 None:intergenic 35.0%
!!! TTGGTTTTACCAATGCAGAA+TGG + chr4_3:53610041-53610060 Msa0647480:intron 35.0%
AGAATGGTAAAGCTTGTCTT+GGG + chr4_3:53610057-53610076 Msa0647480:intron 35.0%
GTCTTGGGGATATAATATAC+CGG + chr4_3:53610072-53610091 Msa0647480:CDS 35.0%
GGCCAAGATACAGTATAATA+AGG + chr4_3:53610388-53610407 Msa0647480:CDS 35.0%
ATGCAGTATATTAGGTGCAT+CGG + chr4_3:53610514-53610533 Msa0647480:intron 35.0%
TCTAGTCTGTATAGTTACAG+AGG + chr4_3:53610795-53610814 Msa0647480:intron 35.0%
TCTGTATAGTTACAGAGGTT+AGG + chr4_3:53610800-53610819 Msa0647480:intron 35.0%
! GAGCTTAGCCTTTAACATAA+TGG + chr4_3:53610930-53610949 Msa0647480:CDS 35.0%
GATTCTGGCCATTATGTTAA+AGG - chr4_3:53610941-53610960 None:intergenic 35.0%
!! ATAAAGGACATCATCGATTC+TGG - chr4_3:53610956-53610975 None:intergenic 35.0%
AGATTCTATCTTGTTCAGCA+GGG + chr4_3:53611008-53611027 Msa0647480:CDS 35.0%
ACACATGATGTAAAGAGGAA+TGG + chr4_3:53611174-53611193 Msa0647480:CDS 35.0%
ATAGATACTAAGTGCCTCTT+TGG - chr4_3:53611467-53611486 None:intergenic 35.0%
TATTCGTAGGCAATATGAGT+AGG + chr4_3:53611586-53611605 Msa0647480:three_prime_UTR 35.0%
!! AGAAATGGGAAGTGTTTCGT+CGG + chr4_3:53607890-53607909 Msa0647480:exon 40.0%
! GAAAGTTCTAGCAGCTTCTA+CGG + chr4_3:53607969-53607988 Msa0647480:CDS 40.0%
!! TGGGAAAGATGTTGCTGTTT+GGG + chr4_3:53608103-53608122 Msa0647480:CDS 40.0%
! AAACGTGACTTGGATTTGAC+CGG + chr4_3:53608131-53608150 Msa0647480:CDS 40.0%
TATTCTCCTCCGTACAATTG+TGG + chr4_3:53608176-53608195 Msa0647480:intron 40.0%
ATAAAGCCACAATTGTACGG+AGG - chr4_3:53608185-53608204 None:intergenic 40.0%
!!! ATAGAAATTTTGGGGCTTGG+GGG - chr4_3:53608383-53608402 None:intergenic 40.0%
!! CTTTAATTTAGTGGGCTTGG+TGG + chr4_3:53608704-53608723 Msa0647480:intron 40.0%
!! TTAATTTAGTGGGCTTGGTG+GGG + chr4_3:53608706-53608725 Msa0647480:intron 40.0%
!! CAAGTGGGCTTTGAAATTTG+GGG + chr4_3:53608736-53608755 Msa0647480:intron 40.0%
!!! CGTTTTGCGAAGTTGCTTTT+AGG + chr4_3:53608823-53608842 Msa0647480:CDS 40.0%
!! CTTTTAGGAGAGGATATGTC+TGG + chr4_3:53608838-53608857 Msa0647480:CDS 40.0%
!! ATATGTCTGGTGGTGGAAAA+GGG + chr4_3:53608851-53608870 Msa0647480:CDS 40.0%
! CGACTGTGTTTGGTGAATTA+TGG + chr4_3:53609200-53609219 Msa0647480:CDS 40.0%
! CTGTGTTTGGTGAATTATGG+AGG + chr4_3:53609203-53609222 Msa0647480:CDS 40.0%
! GTTTGGTGAATTATGGAGGT+TGG + chr4_3:53609207-53609226 Msa0647480:CDS 40.0%
CACCACAGAAAAAAGCAATG+TGG + chr4_3:53609239-53609258 Msa0647480:CDS 40.0%
AGAAAAAAGCAATGTGGCGT+AGG + chr4_3:53609245-53609264 Msa0647480:CDS 40.0%
GAAAAAAGCAATGTGGCGTA+GGG + chr4_3:53609246-53609265 Msa0647480:CDS 40.0%
GAGTGATTCAATAGTCGAGT+TGG + chr4_3:53609291-53609310 Msa0647480:CDS 40.0%
CTTATGAAGTAATGGCAACG+CGG + chr4_3:53609347-53609366 Msa0647480:CDS 40.0%
TTGATGTACAAATCAGAGCG+AGG - chr4_3:53609373-53609392 None:intergenic 40.0%
ATGCTGCTAAGTATGTTGGA+TGG + chr4_3:53609421-53609440 Msa0647480:CDS 40.0%
TGCTGCTAAGTATGTTGGAT+GGG + chr4_3:53609422-53609441 Msa0647480:CDS 40.0%
! TGTTGATAGAGGGATTGTGT+TGG + chr4_3:53609468-53609487 Msa0647480:CDS 40.0%
! GTTGATAGAGGGATTGTGTT+GGG + chr4_3:53609469-53609488 Msa0647480:CDS 40.0%
GATTGTGTTGGGTGATTCTA+AGG + chr4_3:53609480-53609499 Msa0647480:CDS 40.0%
TTCTCTTCTTGCCTAACAGA+AGG - chr4_3:53609526-53609545 None:intergenic 40.0%
CTGTTAGGCAAGAAGAGAAA+TGG + chr4_3:53609527-53609546 Msa0647480:CDS 40.0%
TTAGGCAAGAAGAGAAATGG+TGG + chr4_3:53609530-53609549 Msa0647480:CDS 40.0%
TGTGTGAGGATGATAGGAAA+AGG + chr4_3:53609584-53609603 Msa0647480:CDS 40.0%
AAGGATTCAACATAAGCAGC+AGG - chr4_3:53609694-53609713 None:intergenic 40.0%
CTTATGTTGAATCCTTGCCA+AGG + chr4_3:53609698-53609717 Msa0647480:CDS 40.0%
AAGCATTATTACCCTTGGCA+AGG - chr4_3:53609713-53609732 None:intergenic 40.0%
CAAGCTTTACCATTCTGCAT+TGG - chr4_3:53610053-53610072 None:intergenic 40.0%
CAGAATGGTAAAGCTTGTCT+TGG + chr4_3:53610056-53610075 Msa0647480:intron 40.0%
GAATGGTAAAGCTTGTCTTG+GGG + chr4_3:53610058-53610077 Msa0647480:intron 40.0%
ATATACCGGTACATAACTGC+TGG + chr4_3:53610086-53610105 Msa0647480:CDS 40.0%
TTGAGGCTGCTATACATGTA+TGG + chr4_3:53610186-53610205 Msa0647480:CDS 40.0%
AGAACCACTTTCTTGTCCAA+CGG + chr4_3:53610300-53610319 Msa0647480:CDS 40.0%
TATATTAGGTGCATCGGATC+TGG + chr4_3:53610520-53610539 Msa0647480:intron 40.0%
CTCACAAAATACAGGCGTAA+GGG - chr4_3:53610634-53610653 None:intergenic 40.0%
TCTCACAAAATACAGGCGTA+AGG - chr4_3:53610635-53610654 None:intergenic 40.0%
TAGTTACAGAGGTTAGGCAT+CGG + chr4_3:53610806-53610825 Msa0647480:intron 40.0%
! TGGAACATTGTTTTCCTTGC+AGG + chr4_3:53610864-53610883 Msa0647480:intron 40.0%
! TTGTTTTCCTTGCAGGATGT+AGG + chr4_3:53610871-53610890 Msa0647480:intron 40.0%
! TGTTTTCCTTGCAGGATGTA+GGG + chr4_3:53610872-53610891 Msa0647480:intron 40.0%
TGAAAGTTATTCCAGGGTGA+TGG + chr4_3:53610906-53610925 Msa0647480:CDS 40.0%
CAGATTCTATCTTGTTCAGC+AGG + chr4_3:53611007-53611026 Msa0647480:CDS 40.0%
GATTCTATCTTGTTCAGCAG+GGG + chr4_3:53611009-53611028 Msa0647480:CDS 40.0%
!! GGAGTCATTCGCTTTTGAAT+AGG - chr4_3:53611051-53611070 None:intergenic 40.0%
! TAGCAAAAGGAGAGGCATAT+GGG - chr4_3:53611098-53611117 None:intergenic 40.0%
TGATGTAAAGAGGAATGGCA+AGG + chr4_3:53611179-53611198 Msa0647480:CDS 40.0%
GATGTAAAGAGGAATGGCAA+GGG + chr4_3:53611180-53611199 Msa0647480:CDS 40.0%
CGACTGATTATGAGAAGGTA+TGG + chr4_3:53611232-53611251 Msa0647480:CDS 40.0%
! TCTAGAACTCAGTCTCTTTC+TGG - chr4_3:53611303-53611322 None:intergenic 40.0%
!! AAGAGACTGAGTTCTAGAGT+TGG + chr4_3:53611305-53611324 Msa0647480:exon 40.0%
!! TTCTAGAGTTGGCATGTGTT+TGG + chr4_3:53611316-53611335 Msa0647480:three_prime_UTR 40.0%
ATTGCCGCAAGTTTGCAAAA+CGG - chr4_3:53611351-53611370 None:intergenic 40.0%
TACTAAGTGCCTCTTTGGTT+TGG - chr4_3:53611462-53611481 None:intergenic 40.0%
TGTACCATTCCCTGTATATG+AGG + chr4_3:53611549-53611568 Msa0647480:three_prime_UTR 40.0%
GTACCATTCCCTGTATATGA+GGG + chr4_3:53611550-53611569 Msa0647480:three_prime_UTR 40.0%
ATAGAAAAACACCATGTGGG+TGG - chr4_3:53611683-53611702 None:intergenic 40.0%
AGTAAGGACATAATGGCACA+TGG - chr4_3:53611765-53611784 None:intergenic 40.0%
CTATGGCAGTAAGGACATAA+TGG - chr4_3:53611772-53611791 None:intergenic 40.0%
! ATTTGAAGGCATACCTGTGT+AGG - chr4_3:53611804-53611823 None:intergenic 40.0%
! TCAGTGTTGTTGTTGAGGTG+TGG - chr4_3:53607668-53607687 None:intergenic 45.0%
! CTCTGTCAGTGTTGTTGTTG+AGG - chr4_3:53607673-53607692 None:intergenic 45.0%
GGTAACGCACATTTGGGTAA+CGG - chr4_3:53607836-53607855 None:intergenic 45.0%
GAAGATGTTTCAGAGCGATG+TGG + chr4_3:53607912-53607931 Msa0647480:CDS 45.0%
! GTGGGAAAGATGTTGCTGTT+TGG + chr4_3:53608102-53608121 Msa0647480:CDS 45.0%
TTGGGATCACAAACGTGACT+TGG + chr4_3:53608121-53608140 Msa0647480:CDS 45.0%
ACGTAGAGCCGTCAATATCA+TGG + chr4_3:53608253-53608272 Msa0647480:intron 45.0%
CGTAGAGCCGTCAATATCAT+GGG + chr4_3:53608254-53608273 Msa0647480:intron 45.0%
GTAGAGCCGTCAATATCATG+GGG + chr4_3:53608255-53608274 Msa0647480:intron 45.0%
TCAAGGCCCCATGATATTGA+CGG - chr4_3:53608264-53608283 None:intergenic 45.0%
! ATCATGGGGCCTTGAAGTTT+TGG + chr4_3:53608269-53608288 Msa0647480:intron 45.0%
TTCAAGCCCCCTTACTATGT+GGG - chr4_3:53608301-53608320 None:intergenic 45.0%
TTTCAAGCCCCCTTACTATG+TGG - chr4_3:53608302-53608321 None:intergenic 45.0%
TTGTGGGCTTGCATCAATGT+GGG - chr4_3:53608343-53608362 None:intergenic 45.0%
TTTGTGGGCTTGCATCAATG+TGG - chr4_3:53608344-53608363 None:intergenic 45.0%
!! GGGCTTTAATTTAGTGGGCT+TGG + chr4_3:53608701-53608720 Msa0647480:intron 45.0%
!! TAATTTAGTGGGCTTGGTGG+GGG + chr4_3:53608707-53608726 Msa0647480:intron 45.0%
!!! TGCGAAGTTGCTTTTAGGAG+AGG + chr4_3:53608828-53608847 Msa0647480:CDS 45.0%
TTAGGAGAGGATATGTCTGG+TGG + chr4_3:53608841-53608860 Msa0647480:CDS 45.0%
!! GATATGTCTGGTGGTGGAAA+AGG + chr4_3:53608850-53608869 Msa0647480:CDS 45.0%
!! TATGTCTGGTGGTGGAAAAG+GGG + chr4_3:53608852-53608871 Msa0647480:CDS 45.0%
!! CAACATTGTCGGTGCTTTTG+AGG + chr4_3:53609080-53609099 Msa0647480:intron 45.0%
GTAATTGCAGCGACTGTGTT+TGG + chr4_3:53609190-53609209 Msa0647480:intron 45.0%
!!! GCTTTTTTCTGTGGTGCTAG+TGG - chr4_3:53609235-53609254 None:intergenic 45.0%
!!! CGCCACATTGCTTTTTTCTG+TGG - chr4_3:53609244-53609263 None:intergenic 45.0%
CCTGGAAATTGTTGCACAGA+AGG - chr4_3:53609319-53609338 None:intergenic 45.0%
CCTTCTGTGCAACAATTTCC+AGG + chr4_3:53609316-53609335 Msa0647480:CDS 45.0%
TCTGTGCAACAATTTCCAGG+TGG + chr4_3:53609319-53609338 Msa0647480:CDS 45.0%
ACTTCATAAGTTCCACCACC+TGG - chr4_3:53609337-53609356 None:intergenic 45.0%
CCTGCATTGAAGAAGCTTGA+CGG + chr4_3:53609397-53609416 Msa0647480:CDS 45.0%
CGGAATGCTGCTAAGTATGT+TGG + chr4_3:53609417-53609436 Msa0647480:CDS 45.0%
!! TTTGGTGGAAGCTTTGGAGA+AGG - chr4_3:53609559-53609578 None:intergenic 45.0%
TCTCCAAAGCTTCCACCAAA+TGG + chr4_3:53609559-53609578 Msa0647480:CDS 45.0%
CTCCAAAGCTTCCACCAAAT+GGG + chr4_3:53609560-53609579 Msa0647480:CDS 45.0%
! AACCCATTTGGTGGAAGCTT+TGG - chr4_3:53609565-53609584 None:intergenic 45.0%
TCATCCTCACACAACCCATT+TGG - chr4_3:53609577-53609596 None:intergenic 45.0%
! ATGGGTTGTGTGAGGATGAT+AGG + chr4_3:53609578-53609597 Msa0647480:CDS 45.0%
ACTGACCAGCAGTTATGTAC+CGG - chr4_3:53610094-53610113 None:intergenic 45.0%
TGAATGTCTTCTTGACTGCC+TGG + chr4_3:53610121-53610140 Msa0647480:CDS 45.0%
GGTGCTCAGATGATAAATCC+AGG - chr4_3:53610142-53610161 None:intergenic 45.0%
AGGCTGCTATACATGTATGG+AGG + chr4_3:53610189-53610208 Msa0647480:CDS 45.0%
AAAAATCGGGGAAAGCCAGA+CGG + chr4_3:53610234-53610253 Msa0647480:CDS 45.0%
!! GTAAAGAGCCTTGTTGCTGA+TGG + chr4_3:53610272-53610291 Msa0647480:CDS 45.0%
TCTTCTCACCATCAGCAACA+AGG - chr4_3:53610283-53610302 None:intergenic 45.0%
GAACCACTTTCTTGTCCAAC+GGG + chr4_3:53610301-53610320 Msa0647480:CDS 45.0%
TTTGAGGAAGCCCAGGAAAT+CGG - chr4_3:53610355-53610374 None:intergenic 45.0%
TCCTCAAACAGCGCTAGATA+TGG + chr4_3:53610367-53610386 Msa0647480:CDS 45.0%
TTGTTCTATGTACCGTTGCC+AGG - chr4_3:53610602-53610621 None:intergenic 45.0%
AGTTACAGAGGTTAGGCATC+GGG + chr4_3:53610807-53610826 Msa0647480:intron 45.0%
TGTTGAATTGAGAAGGGGCT+GGG - chr4_3:53611072-53611091 None:intergenic 45.0%
GGGTGTGTTGAATTGAGAAG+GGG - chr4_3:53611077-53611096 None:intergenic 45.0%
GGGGTGTGTTGAATTGAGAA+GGG - chr4_3:53611078-53611097 None:intergenic 45.0%
TGGGGTGTGTTGAATTGAGA+AGG - chr4_3:53611079-53611098 None:intergenic 45.0%
! AGCAAAAGGAGAGGCATATG+GGG - chr4_3:53611097-53611116 None:intergenic 45.0%
! GTAGCAAAAGGAGAGGCATA+TGG - chr4_3:53611099-53611118 None:intergenic 45.0%
CAGAACGAAGGAGTAGCAAA+AGG - chr4_3:53611111-53611130 None:intergenic 45.0%
TTTACATCATGTGTCCTGCG+TGG - chr4_3:53611168-53611187 None:intergenic 45.0%
GCAGGACACATGATGTAAAG+AGG + chr4_3:53611169-53611188 Msa0647480:CDS 45.0%
TGGCAAGGGTAAAGATTCCA+AGG + chr4_3:53611194-53611213 Msa0647480:CDS 45.0%
AAGGGTAAAGATTCCAAGGC+CGG + chr4_3:53611198-53611217 Msa0647480:CDS 45.0%
ATCAGTCGAAGCCAACTTTC+CGG - chr4_3:53611220-53611239 None:intergenic 45.0%
GGCTTCGACTGATTATGAGA+AGG + chr4_3:53611227-53611246 Msa0647480:CDS 45.0%
CAGAATTTCTTCTTGCGCTG+AGG - chr4_3:53611272-53611291 None:intergenic 45.0%
CTCAGCGCAAGAAGAAATTC+TGG + chr4_3:53611270-53611289 Msa0647480:CDS 45.0%
GAGTTGGCATGTGTTTGGAA+CGG + chr4_3:53611321-53611340 Msa0647480:three_prime_UTR 45.0%
TTGCCGCAAGTTTGCAAAAC+GGG - chr4_3:53611350-53611369 None:intergenic 45.0%
TGACGTGGAAATAGAGAAGC+TGG - chr4_3:53611403-53611422 None:intergenic 45.0%
AGCTTCTCTATTTCCACGTC+AGG + chr4_3:53611402-53611421 Msa0647480:three_prime_UTR 45.0%
AACACATTGAGACGCACGTT+TGG + chr4_3:53611425-53611444 Msa0647480:three_prime_UTR 45.0%
ACACATTGAGACGCACGTTT+GGG + chr4_3:53611426-53611445 Msa0647480:three_prime_UTR 45.0%
ACACCCTCATATACAGGGAA+TGG - chr4_3:53611556-53611575 None:intergenic 45.0%
! CGTCATTGACTATGGCAGTA+AGG - chr4_3:53611781-53611800 None:intergenic 45.0%
! TGTGTAGGCGTCATTGACTA+TGG - chr4_3:53611789-53611808 None:intergenic 45.0%
ATAGTCAATGACGCCTACAC+AGG + chr4_3:53611788-53611807 Msa0647480:three_prime_UTR 45.0%
TGTGGACCTGTGGAGTATAG+TGG - chr4_3:53607650-53607669 None:intergenic 50.0%
GATTCGCTGATGTCAGCACT+CGG - chr4_3:53607948-53607967 None:intergenic 50.0%
!! GAGTGCTGACATCAGCGAAT+CGG + chr4_3:53607947-53607966 Msa0647480:CDS 50.0%
TCATTTCAACTTGCCGGCGA+CGG + chr4_3:53608055-53608074 Msa0647480:CDS 50.0%
ACATCTTTCCCACCGATGAC+CGG - chr4_3:53608095-53608114 None:intergenic 50.0%
TGAATGAGCGAGCACTCTAC+CGG - chr4_3:53608153-53608172 None:intergenic 50.0%
!!! TTGGTGGGGGCTTTTTCAAG+TGG + chr4_3:53608720-53608739 Msa0647480:intron 50.0%
!!! TGGTGGGGGCTTTTTCAAGT+GGG + chr4_3:53608721-53608740 Msa0647480:intron 50.0%
AACGCCATCACGAATCTCTC+CGG + chr4_3:53608898-53608917 Msa0647480:CDS 50.0%
CTAACCGGAGAGATTCGTGA+TGG - chr4_3:53608905-53608924 None:intergenic 50.0%
AGCAATGTGGCGTAGGGAAA+TGG + chr4_3:53609252-53609271 Msa0647480:CDS 50.0%
TGTGGCGTAGGGAAATGGAA+TGG + chr4_3:53609257-53609276 Msa0647480:CDS 50.0%
GTGCAACAATTTCCAGGTGG+TGG + chr4_3:53609322-53609341 Msa0647480:CDS 50.0%
CCGTCAAGCTTCTTCAATGC+AGG - chr4_3:53609400-53609419 None:intergenic 50.0%
!! TCCACCAAATGGGTTGTGTG+AGG + chr4_3:53609570-53609589 Msa0647480:CDS 50.0%
TCCTCACACAACCCATTTGG+TGG - chr4_3:53609574-53609593 None:intergenic 50.0%
CCATGGCAGCCTTAAGTATC+TGG - chr4_3:53609636-53609655 None:intergenic 50.0%
CCAGATACTTAAGGCTGCCA+TGG + chr4_3:53609633-53609652 Msa0647480:CDS 50.0%
!! AGCTTGAAACGCCGATTTCC+TGG + chr4_3:53610341-53610360 Msa0647480:CDS 50.0%
!! GCTTGAAACGCCGATTTCCT+GGG + chr4_3:53610342-53610361 Msa0647480:CDS 50.0%
GCCATATCTAGCGCTGTTTG+AGG - chr4_3:53610371-53610390 None:intergenic 50.0%
TCTATCTTGTTCAGCAGGGG+AGG + chr4_3:53611012-53611031 Msa0647480:CDS 50.0%
! TTGTTCAGCAGGGGAGGTTT+TGG + chr4_3:53611018-53611037 Msa0647480:CDS 50.0%
GTGTTGAATTGAGAAGGGGC+TGG - chr4_3:53611073-53611092 None:intergenic 50.0%
CGAAGGAGTAGCAAAAGGAG+AGG - chr4_3:53611106-53611125 None:intergenic 50.0%
TGTTCCTCCTCTCCTGTTAG+TGG + chr4_3:53611129-53611148 Msa0647480:CDS 50.0%
GTTCCTCCTCTCCTGTTAGT+GGG + chr4_3:53611130-53611149 Msa0647480:CDS 50.0%
AGATTCCAAGGCCGGAAAGT+TGG + chr4_3:53611206-53611225 Msa0647480:CDS 50.0%
! GAGAAGGTATGGTCATACGC+AGG + chr4_3:53611243-53611262 Msa0647480:CDS 50.0%
CGCAAGAAGAAATTCTGGCG+AGG + chr4_3:53611275-53611294 Msa0647480:CDS 50.0%
! CGTCCCGTTTTGCAAACTTG+CGG + chr4_3:53611344-53611363 Msa0647480:three_prime_UTR 50.0%
GTCTCAATGTGTTCCTGACG+TGG - chr4_3:53611418-53611437 None:intergenic 50.0%
GGTAGACTGCCAAACCAAAG+AGG + chr4_3:53611450-53611469 Msa0647480:three_prime_UTR 50.0%
TAGAGAGGGCCGTTCATCTT+TGG + chr4_3:53611512-53611531 Msa0647480:three_prime_UTR 50.0%
!! ATTTTTGGAGGCCACCCACA+TGG + chr4_3:53611669-53611688 Msa0647480:three_prime_UTR 50.0%
GTTGTTGAGGTGTGGACCTG+TGG - chr4_3:53607660-53607679 None:intergenic 55.0%
AGCTGAGCTGGAAGCTCCTT+CGG - chr4_3:53608009-53608028 None:intergenic 55.0%
! TGGCGAGAGATTAGCTGAGC+TGG - chr4_3:53608021-53608040 None:intergenic 55.0%
CGCCGCTCATTTCAACTTGC+CGG + chr4_3:53608049-53608068 Msa0647480:CDS 55.0%
! CGCCGGCAAGTTGAAATGAG+CGG - chr4_3:53608054-53608073 None:intergenic 55.0%
CAGGCTATGCTTCCGGTCAT+CGG + chr4_3:53608080-53608099 Msa0647480:CDS 55.0%
CTATGCTTCCGGTCATCGGT+GGG + chr4_3:53608084-53608103 Msa0647480:CDS 55.0%
GGAGAGGATATGTCTGGTGG+TGG + chr4_3:53608844-53608863 Msa0647480:CDS 55.0%
CTGCCCGTTGGACAAGAAAG+TGG - chr4_3:53610307-53610326 None:intergenic 55.0%
!! AGAGGTTAGGCATCGGGAGA+AGG + chr4_3:53610813-53610832 Msa0647480:intron 55.0%
!! GAGGTTAGGCATCGGGAGAA+GGG + chr4_3:53610814-53610833 Msa0647480:intron 55.0%
AGACTGCCCTACATCCTGCA+AGG - chr4_3:53610881-53610900 None:intergenic 55.0%
!! TTCAGCAGGGGAGGTTTTGG+TGG + chr4_3:53611021-53611040 Msa0647480:CDS 55.0%
GGAGAGGAGGAACAGAACGA+AGG - chr4_3:53611123-53611142 None:intergenic 55.0%
ACTCCCACTAACAGGAGAGG+AGG - chr4_3:53611136-53611155 None:intergenic 55.0%
AGGACTCCCACTAACAGGAG+AGG - chr4_3:53611139-53611158 None:intergenic 55.0%
CTGCAAGGACTCCCACTAAC+AGG - chr4_3:53611144-53611163 None:intergenic 55.0%
CATTGAGACGCACGTTTGGG+TGG + chr4_3:53611429-53611448 Msa0647480:three_prime_UTR 55.0%
! CTCCTTCGGCGTCGAAACGT+CGG - chr4_3:53607995-53608014 None:intergenic 60.0%
AAATGAGCGGCGAGCTGACG+TGG - chr4_3:53608041-53608060 None:intergenic 60.0%
GCTATGCTTCCGGTCATCGG+TGG + chr4_3:53608083-53608102 Msa0647480:CDS 60.0%
GGGCTGGGGCCAAAACTTCA+AGG - chr4_3:53608281-53608300 None:intergenic 60.0%
TGGCCCCAGCCCACATAGTA+AGG + chr4_3:53608289-53608308 Msa0647480:intron 60.0%
GGCCCCAGCCCACATAGTAA+GGG + chr4_3:53608290-53608309 Msa0647480:intron 60.0%
GCCCCAGCCCACATAGTAAG+GGG + chr4_3:53608291-53608310 Msa0647480:intron 60.0%
! CCCCCTTACTATGTGGGCTG+GGG - chr4_3:53608295-53608314 None:intergenic 60.0%
CCCCAGCCCACATAGTAAGG+GGG + chr4_3:53608292-53608311 Msa0647480:intron 60.0%
GCCCCCTTACTATGTGGGCT+GGG - chr4_3:53608296-53608315 None:intergenic 60.0%
AGCCCCCTTACTATGTGGGC+TGG - chr4_3:53608297-53608316 None:intergenic 60.0%
GGGGAAAGCCAGACGGTCTT+GGG + chr4_3:53610241-53610260 Msa0647480:CDS 60.0%
GGGAAAGCCAGACGGTCTTG+GGG + chr4_3:53610242-53610261 Msa0647480:CDS 60.0%
AAAGCCAGACGGTCTTGGGG+TGG + chr4_3:53610245-53610264 Msa0647480:CDS 60.0%
CTTTCCACCCCAAGACCGTC+TGG - chr4_3:53610252-53610271 None:intergenic 60.0%
CAGACGGTCTTGGGGTGGAA+AGG + chr4_3:53610250-53610269 Msa0647480:CDS 60.0%
GCAGTAGTGTCTCTGCCCGT+TGG - chr4_3:53610319-53610338 None:intergenic 60.0%
AGCGCTGTTTGAGGAAGCCC+AGG - chr4_3:53610362-53610381 None:intergenic 60.0%
GGCTAAGCTCTCCATCACCC+TGG - chr4_3:53610920-53610939 None:intergenic 60.0%
! TGTGTCCTGCGTGGACTGCA+AGG - chr4_3:53611159-53611178 None:intergenic 60.0%
CGAAGCCAACTTTCCGGCCT+TGG - chr4_3:53611214-53611233 None:intergenic 60.0%
GACGGCGCAGGCTATGCTTC+CGG + chr4_3:53608073-53608092 Msa0647480:CDS 65.0%
CGGGGAAAGCCAGACGGTCT+TGG + chr4_3:53610240-53610259 Msa0647480:CDS 65.0%
GGAGTCCTTGCAGTCCACGC+AGG + chr4_3:53611151-53611170 Msa0647480:CDS 65.0%
GGCCGACGTTTCGACGCCGA+AGG + chr4_3:53607990-53608009 Msa0647480:CDS 70.0%
AGCATAGCCTGCGCCGTCGC+CGG - chr4_3:53608071-53608090 None:intergenic 70.0%
CAACTTGCCGGCGACGGCGC+AGG + chr4_3:53608061-53608080 Msa0647480:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53607647 53611930 53607647 ID=Msa0647480;Name=Msa0647480
chr4_3 mRNA 53607647 53611930 53607647 ID=Msa0647480-mRNA-1;Parent=Msa0647480;Name=Msa0647480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=247|1|1|1|1|1|5|616|558
chr4_3 exon 53607647 53608152 53607647 ID=Msa0647480-mRNA-1:exon:13444;Parent=Msa0647480-mRNA-1
chr4_3 exon 53608803 53608919 53608803 ID=Msa0647480-mRNA-1:exon:13445;Parent=Msa0647480-mRNA-1
chr4_3 exon 53609200 53609720 53609200 ID=Msa0647480-mRNA-1:exon:13446;Parent=Msa0647480-mRNA-1
chr4_3 exon 53610059 53610409 53610059 ID=Msa0647480-mRNA-1:exon:13447;Parent=Msa0647480-mRNA-1
chr4_3 exon 53610886 53611930 53610886 ID=Msa0647480-mRNA-1:exon:13448;Parent=Msa0647480-mRNA-1
chr4_3 five_prime_UTR 53607647 53607893 53607647 ID=Msa0647480-mRNA-1:five_prime_utr;Parent=Msa0647480-mRNA-1
chr4_3 CDS 53607894 53608152 53607894 ID=Msa0647480-mRNA-1:cds;Parent=Msa0647480-mRNA-1
chr4_3 CDS 53608803 53608919 53608803 ID=Msa0647480-mRNA-1:cds;Parent=Msa0647480-mRNA-1
chr4_3 CDS 53609200 53609720 53609200 ID=Msa0647480-mRNA-1:cds;Parent=Msa0647480-mRNA-1
chr4_3 CDS 53610059 53610409 53610059 ID=Msa0647480-mRNA-1:cds;Parent=Msa0647480-mRNA-1
chr4_3 CDS 53610886 53611314 53610886 ID=Msa0647480-mRNA-1:cds;Parent=Msa0647480-mRNA-1
chr4_3 three_prime_UTR 53611315 53611930 53611315 ID=Msa0647480-mRNA-1:three_prime_utr;Parent=Msa0647480-mRNA-1
Gene Sequence

>Msa0647480

ATGGGAAGTGTTTCGTCGGAAGATGTTTCAGAGCGATGTGGTAGTTACAGTCCGAGTGCTGACATCAGCGAATCGGAAAGTTCTAGCAGCTTCTACGGCCGACGTTTCGACGCCGAAGGAGCTTCCAGCTCAGCTAATCTCTCGCCACGTCAGCTCGCCGCTCATTTCAACTTGCCGGCGACGGCGCAGGCTATGCTTCCGGTCATCGGTGGGAAAGATGTTGCTGTTTGGGATCACAAACGTGACTTGGATTTGACCGAAGTTGAAATGATGAAGGAACGTTTTGCGAAGTTGCTTTTAGGAGAGGATATGTCTGGTGGTGGAAAAGGGGTTTGCACTGCACTTGCAATCTCTAACGCCATCACGAATCTCTCCGCGACTGTGTTTGGTGAATTATGGAGGTTGGAGCCACTAGCACCACAGAAAAAAGCAATGTGGCGTAGGGAAATGGAATGGCTACTTTGCGTGAGTGATTCAATAGTCGAGTTGGTGCCTTCTGTGCAACAATTTCCAGGTGGTGGAACTTATGAAGTAATGGCAACGCGGCCTCGCTCTGATTTGTACATCAATCTTCCTGCATTGAAGAAGCTTGACGGAATGCTGCTAAGTATGTTGGATGGGTTTTGTGATACACAGTTTTGGTATGTTGATAGAGGGATTGTGTTGGGTGATTCTAAGGATTGTGATGATTATGGTAGACCTTCTGTTAGGCAAGAAGAGAAATGGTGGCTTCCTTCTCCAAAGCTTCCACCAAATGGGTTGTGTGAGGATGATAGGAAAAGGTTGCAGCAGTGTAGAGATTGTACAAACCAGATACTTAAGGCTGCCATGGCGATTAATAGTTCTGTTCTTGCTGAAATGGAAATTCCTGCTGCTTATGTTGAATCCTTGCCAAGGAATGGTAAAGCTTGTCTTGGGGATATAATATACCGGTACATAACTGCTGGTCAGTTTTCGTCTGAATGTCTTCTTGACTGCCTGGATTTATCATCTGAGCACCACACACAAGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGTTGAAAGACTATAAGAAACTTAAAAAATCGGGGAAAGCCAGACGGTCTTGGGGTGGAAAGGTAAAGAGCCTTGTTGCTGATGGTGAGAAGAACCACTTTCTTGTCCAACGGGCAGAGACACTACTGCAAAGCTTGAAACGCCGATTTCCTGGGCTTCCTCAAACAGCGCTAGATATGGCCAAGATACAGTATAATAAGGATGTAGGGCAGTCTATTCTTGAAAGTTATTCCAGGGTGATGGAGAGCTTAGCCTTTAACATAATGGCCAGAATCGATGATGTCCTTTATGTAGACGATACTATAAAACGATGTGCAGCTGCAGATTCTATCTTGTTCAGCAGGGGAGGTTTTGGTGGTCTGCCTATTCAAAAGCGAATGACTCCCAGCCCCTTCTCAATTCAACACACCCCATATGCCTCTCCTTTTGCTACTCCTTCGTTCTGTTCCTCCTCTCCTGTTAGTGGGAGTCCTTGCAGTCCACGCAGGACACATGATGTAAAGAGGAATGGCAAGGGTAAAGATTCCAAGGCCGGAAAGTTGGCTTCGACTGATTATGAGAAGGTATGGTCATACGCAGGAAACCTCAGCGCAAGAAGAAATTCTGGCGAGGCTCCAGAAAGAGACTGA
Protein sequence

>Msa0647480

MGSVSSEDVSERCGSYSPSADISESESSSSFYGRRFDAEGASSSANLSPRQLAAHFNLPATAQAMLPVIGGKDVAVWDHKRDLDLTEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLDGFCDTQFWYVDRGIVLGDSKDCDDYGRPSVRQEEKWWLPSPKLPPNGLCEDDRKRLQQCRDCTNQILKAAMAINSSVLAEMEIPAAYVESLPRNGKACLGDIIYRYITAGQFSSECLLDCLDLSSEHHTQDIANRIEAAIHVWRLKDYKKLKKSGKARRSWGGKVKSLVADGEKNHFLVQRAETLLQSLKRRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDTIKRCAAADSILFSRGGFGGLPIQKRMTPSPFSIQHTPYASPFATPSFCSSSPVSGSPCSPRRTHDVKRNGKGKDSKAGKLASTDYEKVWSYAGNLSARRNSGEAPERD*