AlfalfaGEDB | Msa1346890

M. sativa cultivar zhongmu-4 / Msa1346890

KEGG: K14760
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0031090 GO:0031903 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901661 GO:1901663
PFAM: PF00501.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346890	XP_003594530.3	96.931	554	17	0	1	554	1	554	0.0	1125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346890	sp\|Q8VYJ1\|MENE_ARATH	55.674	564	227	6	3	554	8	560	0.0	652

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346890	G7IKV0	96.751	554	18	0	1	554	1	554	0.0	1124

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1346890	0.804825	1.793887e-49	-8.615850e-47
Msa0000220	Msa1346890	0.829798	4.207094e-55	-8.615850e-47
Msa0001420	Msa1346890	0.827280	1.707182e-54	-8.615850e-47
Msa0001510	Msa1346890	0.844065	9.521131e-59	-8.615850e-47
Msa0001540	Msa1346890	0.868024	8.874450e-66	-8.615850e-47
Msa0002060	Msa1346890	0.804448	2.149384e-49	-8.615850e-47
Msa0002690	Msa1346890	0.874261	7.756377e-68	-8.615850e-47
Msa0002700	Msa1346890	0.873455	1.451570e-67	-8.615850e-47
Msa0003340	Msa1346890	0.822078	2.871062e-53	-8.615850e-47
Msa0004180	Msa1346890	0.845597	3.678522e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346890	MtrunA17_Chr2g0292471	95.213	564	17	1	1	554	1	564	0.0	1115
Msa1346890	MtrunA17_Chr6g0471921	26.157	562	339	14	4	546	10	514	3.24e-37	144
Msa1346890	MtrunA17_Chr2g0327341	26.355	535	323	17	29	543	56	539	2.96e-36	142
Msa1346890	MtrunA17_Chr1g0180551	27.122	483	294	13	21	476	113	564	3.36e-36	142
Msa1346890	MtrunA17_Chr5g0409771	26.606	545	312	15	31	547	71	555	6.33e-36	141
Msa1346890	MtrunA17_Chr1g0180541	26.566	463	303	11	26	476	54	491	1.12e-34	137
Msa1346890	MtrunA17_Chr5g0433231	25.294	510	339	14	48	541	60	543	1.02e-33	135
Msa1346890	MtrunA17_Chr4g0039791	26.071	537	325	13	32	547	76	561	1.08e-33	135
Msa1346890	MtrunA17_Chr4g0028411	26.565	527	333	14	32	549	59	540	1.22e-33	134
Msa1346890	MtrunA17_Chr5g0433241	25.725	552	363	15	8	541	20	542	2.91e-33	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346890	AT1G30520.2	55.674	564	227	6	3	554	8	560	0.0	652
Msa1346890	AT1G30520.1	55.674	564	227	6	3	554	8	560	0.0	652
Msa1346890	AT1G30520.3	57.582	455	170	6	3	445	8	451	0.0	535
Msa1346890	AT1G30520.4	57.582	455	170	6	3	445	8	451	0.0	535
Msa1346890	AT3G21240.1	27.481	524	323	13	40	549	76	556	1.53e-39	152
Msa1346890	AT3G21240.2	29.748	437	264	11	40	462	76	483	3.06e-37	144
Msa1346890	AT3G21240.3	29.748	437	264	11	40	462	76	483	3.06e-37	144
Msa1346890	AT4G05160.1	25.654	573	335	18	8	547	30	544	9.28e-34	135
Msa1346890	AT3G48990.1	27.701	509	311	17	48	546	52	513	2.63e-33	133
Msa1346890	AT4G19010.1	26.443	537	317	17	37	549	82	564	4.98e-33	133

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Find 143 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCAATGTGACATAA+TGG	0.427809	tig0009259:+48454	None:intergenic
AACCAAGAGAAAATTGGCAA+TGG	0.609431	tig0009259:-46752	Msa1346890:CDS
AACTACTCATGGGCACCTGA+AGG	0.606864	tig0009259:-49180	Msa1346890:CDS
AACTATGGCAATCTTGGCTA+GGG	0.537225	tig0009259:+48714	None:intergenic
AACTTTCCGGCGAGATTTCC+CGG	0.284469	tig0009259:-51926	Msa1346890:CDS
AAGAAAATACTCAATGGAGG+TGG	0.563554	tig0009259:-47977	Msa1346890:CDS
AAGAAGAGACCAAGTCCGAA+AGG	0.576659	tig0009259:-46453	Msa1346890:CDS
AAGAGACCAAGTCCGAAAGG+AGG	0.641225	tig0009259:-46450	Msa1346890:CDS
AATGAAGTCTGGTTTGATAC+AGG	0.474828	tig0009259:-47216	Msa1346890:CDS
AATGGTCGCATCAAGAGTGG+CGG	0.674444	tig0009259:-47141	Msa1346890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGCAAAAATCCACTTTCT+AGG	-	tig0009259:46481-46500	Msa1346890:CDS	30.0%
TATTGAATGAACCTAGAAAG+TGG	+	tig0009259:46495-46514	None:intergenic	30.0%
AAAAACTGCCATAGATGAAT+TGG	+	tig0009259:46626-46645	None:intergenic	30.0%
CTAATATGAGACTCTTTCAA+TGG	+	tig0009259:46661-46680	None:intergenic	30.0%
GTCAAAAAGTTGTCACAAAA+TGG	+	tig0009259:46820-46839	None:intergenic	30.0%
CCAATTAACGGAAAATACTT+GGG	+	tig0009259:47199-47218	None:intergenic	30.0%
ACCAATTAACGGAAAATACT+TGG	+	tig0009259:47200-47219	None:intergenic	30.0%
AGAAAATAGGTCAGTTATTC+CGG	+	tig0009259:47373-47392	None:intergenic	30.0%
TGTATAAATAAAGGGGAAAG+TGG	+	tig0009259:47512-47531	None:intergenic	30.0%
GACAAAATGTCGAAATTGTT+AGG	-	tig0009259:47619-47638	Msa1346890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0009259	gene	46201	52045	46201	ID=Msa1346890;Name=Msa1346890
tig0009259	mRNA	46201	52045	46201	ID=Msa1346890-mRNA-1;Parent=Msa1346890;Name=Msa1346890-mRNA-1;_AED=0.20;_eAED=0.20;_QI=62\|1\|1\|1\|1\|1\|10\|211\|554
tig0009259	exon	46201	46541	46201	ID=Msa1346890-mRNA-1:exon:5713;Parent=Msa1346890-mRNA-1
tig0009259	exon	46669	46871	46669	ID=Msa1346890-mRNA-1:exon:5712;Parent=Msa1346890-mRNA-1
tig0009259	exon	47119	47504	47119	ID=Msa1346890-mRNA-1:exon:5711;Parent=Msa1346890-mRNA-1
tig0009259	exon	47906	48033	47906	ID=Msa1346890-mRNA-1:exon:5710;Parent=Msa1346890-mRNA-1
tig0009259	exon	48301	48494	48301	ID=Msa1346890-mRNA-1:exon:5709;Parent=Msa1346890-mRNA-1
tig0009259	exon	48696	48793	48696	ID=Msa1346890-mRNA-1:exon:5708;Parent=Msa1346890-mRNA-1
tig0009259	exon	49154	49252	49154	ID=Msa1346890-mRNA-1:exon:5707;Parent=Msa1346890-mRNA-1
tig0009259	exon	49364	49532	49364	ID=Msa1346890-mRNA-1:exon:5706;Parent=Msa1346890-mRNA-1
tig0009259	exon	49682	49754	49682	ID=Msa1346890-mRNA-1:exon:5705;Parent=Msa1346890-mRNA-1
tig0009259	exon	51799	52045	51799	ID=Msa1346890-mRNA-1:exon:5704;Parent=Msa1346890-mRNA-1
tig0009259	five_prime_UTR	51984	52045	51984	ID=Msa1346890-mRNA-1:five_prime_utr;Parent=Msa1346890-mRNA-1
tig0009259	CDS	51799	51983	51799	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	49682	49754	49682	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	49364	49532	49364	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	49154	49252	49154	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	48696	48793	48696	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	48301	48494	48301	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	47906	48033	47906	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	47119	47504	47119	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	46669	46871	46669	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	CDS	46412	46541	46412	ID=Msa1346890-mRNA-1:cds;Parent=Msa1346890-mRNA-1
tig0009259	three_prime_UTR	46201	46411	46201	ID=Msa1346890-mRNA-1:three_prime_utr;Parent=Msa1346890-mRNA-1

Gene Sequence

>Msa1346890

ATGGCTCATATTTGTCAATGTCTGAGTCGATTGTTAACTTTCCGGCGAGATTTCCCGGTGACCATTGCCGGAAACAACCGCAAGACAGGGCAGCAGTTGGTGGAGGAAGTGGTGTCACTAGCACACGGTCTTCTCCAGTTGGGTGTCACACCAGGTGATGTTGTAGCCATCTCTGCTTACAACAGTGATTTGTATCTAGAATGGTTATTAGCTATTGCATTTGTTGGAGGAATTGCTGCTCCTCTAAATTATCGTTGGAGTTTTGAAGAGGCAAAGTTAGCAATGAAAGCAGTGAGGCCAGTGATGTTAGTGATTGATGAGAGCTGCTATTCATGGTACTTCAAATTCCAACAAAATGATGTTTCATTTTTGAGGTGGCATGTTTTGTTGGATTCCCCTTCCTCAGATTTTACAAACAAGTGGAATGTGTTGACTCCAGGAATACTTAAGAGGCGTCATGTAAAGCCTCTAGAATTTAACTACTCATGGGCACCTGAAGGAGCTGTCATAATCTGCTTCACTTCAGGAACTACTGGAAAACCCAAGGGAGTCACAATAAGCCATGAAGCTTTGATCATACAGTCCCTAGCCAAGATTGCCATAGTTGGATATAGTGAGGATGATGTTTATCTTCATACTGCTCCATTATGTCACATTGGTGGTTTGTCATCAGCCATGGCCATGCTTATGGTTGGAGGTTGCCATGTATTCATGCCGAAGTTTGATGCAAAATTAGCTGTTGGGGACATAGAGCAATATAATGTGACATCTCTTATTACAGTTCCTGCAATGATGACCAGTCTTATTTCTATTGTTAGGCGCAAAGAAACCTGGAAAGGGGGAGAAACTGTCAAGAAAATACTCAATGGAGGTGGAAGCCTCTCGTTTGAGCTTATCAAAGACACTAGCATATTCTTCCATAAGGCTAAGCTTATTTCAGCTTATGGGATGACAGAAGCATGTTCTTCATTGACATTCCTAACGCTGTATGATCCGATGCAAAAAACCATCAGCCATCCTTTTCAAACATATGGTGAAGAAGAATCCAAACATATCATTCATCAACCACAAGGTGTTTGTGTTGGCAAGGCTGCACCTCATGTAGAACTGAAGATATGCAAAGACGGTGACGCAGGAAGAATTTTAACTAGAGGGCCACATTTAATGCTCAGGTATTGGGATCAAACCCTCACAAACACATCAAATCAAAGGAATGAAGTCTGGTTTGATACAGGTGACATTGGATCAATGGATTGTCATGGTAACTTGTGGCTCCTTGGACGTACAAATGGTCGCATCAAGAGTGGCGGAGAGAACATTTACCCTGAAGAGGTTGAAGCAATTCTACTAGAACATCCAGGGATTGCAAGAGTTGTTATTGTGGGAATACCAGATGCACGTTTCACAGAAATGGTAACAGCATGTATCCAACCAAGAGAAAATTGGCAATGGTTAGAGCATTCTACTTCAAATGAAGAGTATCATTTATCCATAAAGAATCTTCAACAATACTGTCTGGAAAATAATTTAAGCAGGTTTAAGATACCAAAGATATTCATTGAATGGAGAAAGCCTTTTCCACTCACTACCACGGGAAAAATAAGAAGAGACCAAGTCCGAAAGGAGGTTCTGTCTGAGCTACAATCTTTGCATAGTAATCTCTGA

Protein sequence

>Msa1346890

MAHICQCLSRLLTFRRDFPVTIAGNNRKTGQQLVEEVVSLAHGLLQLGVTPGDVVAISAYNSDLYLEWLLAIAFVGGIAAPLNYRWSFEEAKLAMKAVRPVMLVIDESCYSWYFKFQQNDVSFLRWHVLLDSPSSDFTNKWNVLTPGILKRRHVKPLEFNYSWAPEGAVIICFTSGTTGKPKGVTISHEALIIQSLAKIAIVGYSEDDVYLHTAPLCHIGGLSSAMAMLMVGGCHVFMPKFDAKLAVGDIEQYNVTSLITVPAMMTSLISIVRRKETWKGGETVKKILNGGGSLSFELIKDTSIFFHKAKLISAYGMTEACSSLTFLTLYDPMQKTISHPFQTYGEEESKHIIHQPQGVCVGKAAPHVELKICKDGDAGRILTRGPHLMLRYWDQTLTNTSNQRNEVWFDTGDIGSMDCHGNLWLLGRTNGRIKSGGENIYPEEVEAILLEHPGIARVVIVGIPDARFTEMVTACIQPRENWQWLEHSTSNEEYHLSIKNLQQYCLENNLSRFKIPKIFIEWRKPFPLTTTGKIRRDQVRKEVLSELQSLHSNL*