AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151790 MtrunA17_Chr1g0160431 79.661 236 24 3 1 212 1 236 1.25e-113 324
Msa0151790 MtrunA17_Chr1g0160441 89.394 66 7 0 1 66 1 66 1.48e-35 120
Msa0151790 MtrunA17_Chr8g0372791 36.264 182 96 5 47 212 48 225 8.82e-16 73.2
Msa0151790 MtrunA17_Chr6g0453501 35.165 182 96 6 47 212 80 255 3.29e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151790 AT2G43630.1 31.937 191 102 5 40 212 82 262 1.67e-20 87.0

Find 86 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGGGTTTCATGGTGAATT+TGG 0.098589 1_4:-14151025 None:intergenic
AAGCGCTTGTTCAATGTTTC+TGG 0.147317 1_4:-14151291 None:intergenic
TAAGCGTATCATGGTAAAAT+TGG 0.154842 1_4:+14153643 Msa0151790:CDS
ATAAGAGATAAACCGTTATT+TGG 0.163192 1_4:+14151621 Msa0151790:CDS
ATCTGGTGCCTTACTCTTTC+TGG 0.178984 1_4:+14152973 Msa0151790:CDS
ACTGGATAACTGGACTATTT+AGG 0.291756 1_4:-14151074 None:intergenic
CGCAAAACAGACTGGATAAC+TGG 0.329265 1_4:-14151084 None:intergenic
CCAGGAGGAGGAGGAGAAGG+TGG 0.330061 1_4:+14152872 Msa0151790:CDS
CCATGTTGGGGTATTCAAAA+TGG 0.340619 1_4:-14153726 None:intergenic
AGGGGTTTCATGGTGAATTT+GGG 0.341492 1_4:-14151024 None:intergenic
CCTCTTCGTGCTGGTGGAAA+AGG 0.365292 1_4:+14151660 Msa0151790:CDS
CAGGATCATACCACCATGTT+GGG 0.367552 1_4:-14153739 None:intergenic
CACCAGATGCGAAAATTGTT+TGG 0.372513 1_4:-14152958 None:intergenic
TAAGAGATAAACCGTTATTT+GGG 0.380799 1_4:+14151622 Msa0151790:CDS
AAACATTGAACAAGCGCTTC+AGG 0.381975 1_4:+14151295 Msa0151790:five_prime_UTR
CCACCTTCTCCTCCTCCTCC+TGG 0.389125 1_4:-14152872 None:intergenic
AAATGCAATCGCTGCCGGTT+TGG 0.390222 1_4:+14151192 Msa0151790:five_prime_UTR
AGGCTTGCAGAGTTCAGATC+TGG 0.393178 1_4:-14151143 None:intergenic
TTACGGAAGCAAATTCAAAA+AGG 0.403502 1_4:+14152812 Msa0151790:CDS
TTAAGGTTTATAGTTGGCTT+AGG 0.406725 1_4:+14153605 Msa0151790:CDS
ACTCGTGGGCAGGGGTTTCA+TGG 0.409740 1_4:-14151034 None:intergenic
TCATGGTGAATTTGGGAGAA+TGG 0.416797 1_4:-14151017 None:intergenic
TAAACTCTTTCCCTCAGATT+CGG 0.418783 1_4:+14151589 Msa0151790:CDS
AGGAGGAGGAGGAGAAGGTG+GGG 0.423587 1_4:+14152874 Msa0151790:CDS
GAAACCCCTGCCCACGAGTT+CGG 0.426290 1_4:+14151038 Msa0151790:five_prime_UTR
GGTGGTGGTGGCAGTCCCAA+TGG 0.428342 1_4:+14152896 Msa0151790:CDS
GGTGGCAGTCCCAATGGCCC+TGG 0.434107 1_4:+14152902 Msa0151790:CDS
GCAGATCCGAACTCGTGGGC+AGG 0.442383 1_4:-14151044 None:intergenic
AAAGATTTCAACCCAAATAA+CGG 0.451388 1_4:-14151633 None:intergenic
AAGCGTATCATGGTAAAATT+GGG 0.456666 1_4:+14153644 Msa0151790:CDS
GGAGGAGGAGGAGAAGGTGG+GGG 0.460530 1_4:+14152875 Msa0151790:CDS
TATTTAGACAATGGTGGAAG+TGG 0.463016 1_4:+14152839 Msa0151790:CDS
CAAGTTACAGCATTTCAACT+TGG 0.466062 1_4:+14151519 Msa0151790:CDS
CCACCAGGAGGAGGAGGAGA+AGG 0.467905 1_4:+14152869 Msa0151790:CDS
AATCAATAGAAGAAGTATTA+CGG 0.472780 1_4:+14152795 Msa0151790:CDS
TTCAATGTTTCTGGCACCGA+CGG 0.485356 1_4:-14151282 None:intergenic
TAACTGGACTATTTAGGAAC+CGG 0.486731 1_4:-14151068 None:intergenic
TCAGATCCACCAGGGCCATT+GGG 0.486936 1_4:-14152911 None:intergenic
TTGAAGCCTCTTCGTGCTGG+TGG 0.489434 1_4:+14151654 Msa0151790:CDS
ATCAGATCCACCAGGGCCAT+TGG 0.489944 1_4:-14152912 None:intergenic
AGAGTGTACCAGAAAGAGTA+AGG 0.496063 1_4:-14152981 None:intergenic
CAGATCCGAACTCGTGGGCA+GGG 0.498905 1_4:-14151043 None:intergenic
GCTGGTGGAAAAGGAATGTC+AGG 0.500826 1_4:+14151669 Msa0151790:CDS
GTAAAGCCACCAGGAGGAGG+AGG 0.507231 1_4:+14152863 Msa0151790:CDS
CATACATCCGCAAAACAGAC+TGG 0.510701 1_4:-14151092 None:intergenic
TTTGTTATACGAGGCCAAAC+CGG 0.510807 1_4:-14151206 None:intergenic
CCACGAGTTCGGATCTGCTC+CGG 0.510859 1_4:+14151049 Msa0151790:five_prime_UTR
TCTTTGAAGCCTCTTCGTGC+TGG 0.511134 1_4:+14151651 Msa0151790:CDS
CAGGAGGAGGAGGAGAAGGT+GGG 0.514543 1_4:+14152873 Msa0151790:CDS
GGAGTAAAGCCACCAGGAGG+AGG 0.524624 1_4:+14152860 Msa0151790:CDS
CCGACGGGAAACTCCGGCGG+CGG 0.533979 1_4:-14151266 None:intergenic
TCAGGATCATACCACCATGT+TGG 0.534231 1_4:-14153740 None:intergenic
CCGGAGCAGATCCGAACTCG+TGG 0.541889 1_4:-14151049 None:intergenic
TGGGAGAATGGAGAAGGGCA+AGG 0.543704 1_4:-14151005 None:intergenic
GGCAGTCCCAATGGCCCTGG+TGG 0.545700 1_4:+14152905 Msa0151790:CDS
ATGCTAATATTCCGAATCTG+AGG 0.550958 1_4:-14151600 None:intergenic
GGCTTGCAGAGTTCAGATCT+GGG 0.554094 1_4:-14151142 None:intergenic
TAGTCGAATTAAGCGTATCA+TGG 0.558198 1_4:+14153634 Msa0151790:CDS
TAAAATTGGGAAAATTGTAC+CGG 0.563003 1_4:+14153657 Msa0151790:CDS
TGAATTTGGGAGAATGGAGA+AGG 0.569860 1_4:-14151011 None:intergenic
GGTGAGTATTTAGACAATGG+TGG 0.570123 1_4:+14152833 Msa0151790:CDS
ACTGCTGTACGAAAATCCTC+AGG 0.570351 1_4:-14153758 None:intergenic
AGATCCGAACTCGTGGGCAG+GGG 0.573911 1_4:-14151042 None:intergenic
TCTCACCGGAAAACCGCCGC+CGG 0.574679 1_4:+14151253 Msa0151790:five_prime_UTR
TGCTAATATTCCGAATCTGA+GGG 0.575319 1_4:-14151599 None:intergenic
TCAATGTTTCTGGCACCGAC+GGG 0.579494 1_4:-14151281 None:intergenic
CTGGCACCGACGGGAAACTC+CGG 0.579930 1_4:-14151272 None:intergenic
CCTTCTCCTCCTCCTCCTGG+TGG 0.583094 1_4:-14152869 None:intergenic
TCTTCATCATCAGATCCACC+AGG 0.590752 1_4:-14152920 None:intergenic
AAAGGTGAGTATTTAGACAA+TGG 0.597947 1_4:+14152830 Msa0151790:CDS
GAATTTGGGAGAATGGAGAA+GGG 0.610047 1_4:-14151010 None:intergenic
AACATGGTGGTATGATCCTG+AGG 0.623546 1_4:+14153742 Msa0151790:CDS
TCGCACTGAACTCATCTCAC+CGG 0.624534 1_4:+14151239 Msa0151790:five_prime_UTR
GGAAGTGGAGTAAAGCCACC+AGG 0.635749 1_4:+14152854 Msa0151790:CDS
GCACCGACGGGAAACTCCGG+CGG 0.642009 1_4:-14151269 None:intergenic
CGGAGCAGATCCGAACTCGT+GGG 0.653286 1_4:-14151048 None:intergenic
AGGATCATACCACCATGTTG+GGG 0.658146 1_4:-14153738 None:intergenic
TGTAAGCTGTTTGTTATACG+AGG 0.661610 1_4:-14151215 None:intergenic
CCGCCGCCGGAGTTTCCCGT+CGG 0.662346 1_4:+14151266 Msa0151790:five_prime_UTR
AATGTCAGGAAATAGTGATG+AGG 0.666768 1_4:+14151683 Msa0151790:CDS
TGTACCGGAGTACGAAACAG+AGG 0.680091 1_4:+14153672 Msa0151790:CDS
GAATTACTATGCATCAGATG+CGG 0.684768 1_4:+14153784 Msa0151790:CDS
CTTCATCATCAGATCCACCA+GGG 0.689052 1_4:-14152919 None:intergenic
GTGGGAGTAAAAGATTTGAA+CGG 0.697000 1_4:+14151119 Msa0151790:five_prime_UTR
TTTGCGGATGTATGACACGT+GGG 0.718268 1_4:+14151101 Msa0151790:five_prime_UTR
AGTGGAGTAAAGCCACCAGG+AGG 0.725114 1_4:+14152857 Msa0151790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTTTTTTCTTTTTAAA+TGG + chr1_4:14152286-14152305 Msa0151790:intron 10.0%
!! AAATTATAACTAAAAAGAAG+TGG - chr1_4:14151714-14151733 None:intergenic 15.0%
!!! TTCTTTTTAAATGGTTTAAA+TGG + chr1_4:14152295-14152314 Msa0151790:intron 15.0%
!!! AAAAATTTTGATGTCAAATT+TGG + chr1_4:14153365-14153384 Msa0151790:intron 15.0%
!!! TTTTCAAAAGTAAATGGATT+AGG - chr1_4:14151166-14151185 None:intergenic 20.0%
!!! AATTTTGCTTGTTATTATTG+AGG + chr1_4:14151729-14151748 Msa0151790:intron 20.0%
!!! ATTTTGCTTGTTATTATTGA+GGG + chr1_4:14151730-14151749 Msa0151790:intron 20.0%
!!! TTTTATCTAAAGATGCATTT+AGG + chr1_4:14151978-14151997 Msa0151790:intron 20.0%
!!! TTAAGTTGTTTATACAAACA+AGG + chr1_4:14152249-14152268 Msa0151790:intron 20.0%
!!! ATTTTTATAATAGACAACCT+AGG + chr1_4:14152475-14152494 Msa0151790:intron 20.0%
!!! TTTTTATAATAGACAACCTA+GGG + chr1_4:14152476-14152495 Msa0151790:intron 20.0%
!!! TTGTTTGGTTTTTAAAATGT+TGG + chr1_4:14152656-14152675 Msa0151790:intron 20.0%
!!! AATCAATAGAAGAAGTATTA+CGG + chr1_4:14152795-14152814 Msa0151790:CDS 20.0%
!!! TAGTTAATGTTTCTGATTAA+TGG + chr1_4:14153131-14153150 Msa0151790:intron 20.0%
!!! TTTGGCTTTTCAAAAGTAAA+TGG - chr1_4:14151172-14151191 None:intergenic 25.0%
! ATAAGAGATAAACCGTTATT+TGG + chr1_4:14151621-14151640 Msa0151790:CDS 25.0%
! TAAGAGATAAACCGTTATTT+GGG + chr1_4:14151622-14151641 Msa0151790:CDS 25.0%
! AAAGATTTCAACCCAAATAA+CGG - chr1_4:14151636-14151655 None:intergenic 25.0%
!!! GAATCATGTTATTTCTCAAT+CGG + chr1_4:14151842-14151861 Msa0151790:intron 25.0%
!!! GGTTATTTTAGTTTATCTAC+TGG + chr1_4:14152015-14152034 Msa0151790:intron 25.0%
!!! TATACAAACAAGGTCTTATT+AGG + chr1_4:14152259-14152278 Msa0151790:intron 25.0%
! TCTGTAGTACAAATATTGAA+AGG + chr1_4:14152447-14152466 Msa0151790:intron 25.0%
! CTGTAGTACAAATATTGAAA+GGG + chr1_4:14152448-14152467 Msa0151790:intron 25.0%
! AAATGCAATGGACAAATTTA+AGG + chr1_4:14152769-14152788 Msa0151790:intron 25.0%
! AATGCAATGGACAAATTTAA+GGG + chr1_4:14152770-14152789 Msa0151790:intron 25.0%
!!! TCTGAATTTTGAAAACTCAA+AGG + chr1_4:14153070-14153089 Msa0151790:intron 25.0%
!!! TAACAGAGTTGATAGAATAT+AGG + chr1_4:14153304-14153323 Msa0151790:intron 25.0%
! ATAATTTCTCTTCAGAAATG+AGG - chr1_4:14153335-14153354 None:intergenic 25.0%
!!! GCACAATTTTTGACTTTTTA+AGG + chr1_4:14153588-14153607 Msa0151790:CDS 25.0%
!!! GACTTTTTAAGGTTTATAGT+TGG + chr1_4:14153599-14153618 Msa0151790:CDS 25.0%
! TAAAATTGGGAAAATTGTAC+CGG + chr1_4:14153657-14153676 Msa0151790:CDS 25.0%
ATGATAGGGGAAGAAAAATT+CGG - chr1_4:14151358-14151377 None:intergenic 30.0%
!! ATTTAGGACTGGTTTAGATT+GGG + chr1_4:14151994-14152013 Msa0151790:intron 30.0%
AGAATTTCCTAATAAGACCT+GGG - chr1_4:14152269-14152288 None:intergenic 30.0%
! GTACTACTGTTCAGTTATTT+TGG - chr1_4:14152618-14152637 None:intergenic 30.0%
ACAAAATCAGACAGTTCAAT+TGG - chr1_4:14152640-14152659 None:intergenic 30.0%
! TTGAACTGTCTGATTTTGTT+TGG + chr1_4:14152641-14152660 Msa0151790:intron 30.0%
ATAATAATCAGAATTCCCCA+TGG + chr1_4:14152735-14152754 Msa0151790:intron 30.0%
ATTTGTAATAGATTGCCATG+GGG - chr1_4:14152753-14152772 None:intergenic 30.0%
CATTTGTAATAGATTGCCAT+GGG - chr1_4:14152754-14152773 None:intergenic 30.0%
GCAATCTATTACAAATGCAA+TGG + chr1_4:14152757-14152776 Msa0151790:intron 30.0%
TTACGGAAGCAAATTCAAAA+AGG + chr1_4:14152812-14152831 Msa0151790:CDS 30.0%
AAAGGTGAGTATTTAGACAA+TGG + chr1_4:14152830-14152849 Msa0151790:CDS 30.0%
ACTCAAAGGAGAAAGTTAAA+TGG + chr1_4:14153084-14153103 Msa0151790:intron 30.0%
!! AACTATAACCCTTTTTAGCA+TGG - chr1_4:14153116-14153135 None:intergenic 30.0%
TCAAAAGTCTTCTCATATAC+CGG - chr1_4:14153231-14153250 None:intergenic 30.0%
AACTCTGTTAATCATGTCAA+GGG - chr1_4:14153294-14153313 None:intergenic 30.0%
GTTTGAGCATTAAGAAATAG+TGG - chr1_4:14153516-14153535 None:intergenic 30.0%
TCATGATGAGATAGATATAC+TGG - chr1_4:14153553-14153572 None:intergenic 30.0%
! TTAAGGTTTATAGTTGGCTT+AGG + chr1_4:14153605-14153624 Msa0151790:CDS 30.0%
TAAGCGTATCATGGTAAAAT+TGG + chr1_4:14153643-14153662 Msa0151790:CDS 30.0%
AAGCGTATCATGGTAAAATT+GGG + chr1_4:14153644-14153663 Msa0151790:CDS 30.0%
TAACTGGACTATTTAGGAAC+CGG - chr1_4:14151071-14151090 None:intergenic 35.0%
ACTGGATAACTGGACTATTT+AGG - chr1_4:14151077-14151096 None:intergenic 35.0%
GTGGGAGTAAAAGATTTGAA+CGG + chr1_4:14151119-14151138 Msa0151790:five_prime_UTR 35.0%
!! TGTAAGCTGTTTGTTATACG+AGG - chr1_4:14151218-14151237 None:intergenic 35.0%
CAAGTTACAGCATTTCAACT+TGG + chr1_4:14151519-14151538 Msa0151790:CDS 35.0%
TAAACTCTTTCCCTCAGATT+CGG + chr1_4:14151589-14151608 Msa0151790:CDS 35.0%
TGCTAATATTCCGAATCTGA+GGG - chr1_4:14151602-14151621 None:intergenic 35.0%
ATGCTAATATTCCGAATCTG+AGG - chr1_4:14151603-14151622 None:intergenic 35.0%
AATGTCAGGAAATAGTGATG+AGG + chr1_4:14151683-14151702 Msa0151790:CDS 35.0%
! TCTAAAGATGCATTTAGGAC+TGG + chr1_4:14151983-14152002 Msa0151790:intron 35.0%
!! CATTTAGGACTGGTTTAGAT+TGG + chr1_4:14151993-14152012 Msa0151790:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG + chr1_4:14152040-14152059 Msa0151790:intron 35.0%
AAGCACTTGTGAGATTGTTT+GGG + chr1_4:14152041-14152060 Msa0151790:intron 35.0%
!! GTTGTTTTCATCAGCTACAA+TGG - chr1_4:14152124-14152143 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+TGG + chr1_4:14152344-14152363 Msa0151790:intron 35.0%
AATTTCCTAATAAGACCTGG+GGG - chr1_4:14152428-14152447 None:intergenic 35.0%
GAATTTCCTAATAAGACCTG+GGG - chr1_4:14152429-14152448 None:intergenic 35.0%
CAGAATTTCCTAATAAGACC+TGG - chr1_4:14152431-14152450 None:intergenic 35.0%
AAAACATTGTTGCATACCCT+AGG - chr1_4:14152495-14152514 None:intergenic 35.0%
!!! CTACTGTTCAGTTATTTTGG+CGG - chr1_4:14152615-14152634 None:intergenic 35.0%
GCATTTGTAATAGATTGCCA+TGG - chr1_4:14152755-14152774 None:intergenic 35.0%
! TATTTAGACAATGGTGGAAG+TGG + chr1_4:14152839-14152858 Msa0151790:CDS 35.0%
GGACAAGTAAATTACTCATC+TGG + chr1_4:14153023-14153042 Msa0151790:intron 35.0%
! TATGAGAAGACTTTTGAGCA+TGG + chr1_4:14153234-14153253 Msa0151790:intron 35.0%
CAACTCTGTTAATCATGTCA+AGG - chr1_4:14153295-14153314 None:intergenic 35.0%
TTCTCTTCAGAAATGAGGAA+TGG - chr1_4:14153330-14153349 None:intergenic 35.0%
TATCTATCTCATCATGAGCA+AGG + chr1_4:14153556-14153575 Msa0151790:intron 35.0%
TAGTCGAATTAAGCGTATCA+TGG + chr1_4:14153634-14153653 Msa0151790:CDS 35.0%
! AATCACTGATGAGCACTTTT+TGG + chr1_4:14153697-14153716 Msa0151790:CDS 35.0%
GAATTACTATGCATCAGATG+CGG + chr1_4:14153784-14153803 Msa0151790:CDS 35.0%
GAATTTGGGAGAATGGAGAA+GGG - chr1_4:14151013-14151032 None:intergenic 40.0%
TGAATTTGGGAGAATGGAGA+AGG - chr1_4:14151014-14151033 None:intergenic 40.0%
TCATGGTGAATTTGGGAGAA+TGG - chr1_4:14151020-14151039 None:intergenic 40.0%
AGGGGTTTCATGGTGAATTT+GGG - chr1_4:14151027-14151046 None:intergenic 40.0%
! CAGTTATCCAGTCTGTTTTG+CGG + chr1_4:14151085-14151104 Msa0151790:five_prime_UTR 40.0%
! TTTGTTATACGAGGCCAAAC+CGG - chr1_4:14151209-14151228 None:intergenic 40.0%
AAGCGCTTGTTCAATGTTTC+TGG - chr1_4:14151294-14151313 None:intergenic 40.0%
AAACATTGAACAAGCGCTTC+AGG + chr1_4:14151295-14151314 Msa0151790:five_prime_UTR 40.0%
!!! GCGTAATAGCCTTTTTTCAG+CGG - chr1_4:14151431-14151450 None:intergenic 40.0%
GCTGAAAAAAGGCTATTACG+CGG + chr1_4:14151430-14151449 Msa0151790:intron 40.0%
! ACGCCATCAATTAGAAGTGT+CGG - chr1_4:14151783-14151802 None:intergenic 40.0%
! GTTTTGTGTTCGTGCTTCAT+AGG + chr1_4:14151906-14151925 Msa0151790:intron 40.0%
TTGTGAGATTGTTTGGGAGA+AGG + chr1_4:14152047-14152066 Msa0151790:intron 40.0%
GATAAGCAGTTGAAGGTCAT+GGG - chr1_4:14152376-14152395 None:intergenic 40.0%
GCAATTGAACCATTACTCAG+AGG - chr1_4:14152548-14152567 None:intergenic 40.0%
GGTGAGTATTTAGACAATGG+TGG + chr1_4:14152833-14152852 Msa0151790:CDS 40.0%
CACCAGATGCGAAAATTGTT+TGG - chr1_4:14152961-14152980 None:intergenic 40.0%
AGAGTGTACCAGAAAGAGTA+AGG - chr1_4:14152984-14153003 None:intergenic 40.0%
TGGTACACTCTCTTTCTCTT+CGG + chr1_4:14152993-14153012 Msa0151790:intron 40.0%
CTCTTTCTCTTCGGTATATG+TGG + chr1_4:14153002-14153021 Msa0151790:intron 40.0%
TGGAAGTAGCCATGCTAAAA+AGG + chr1_4:14153104-14153123 Msa0151790:intron 40.0%
GGAAGTAGCCATGCTAAAAA+GGG + chr1_4:14153105-14153124 Msa0151790:intron 40.0%
GCTAACTATTGAAGTCCTTC+CGG + chr1_4:14153209-14153228 Msa0151790:intron 40.0%
AAGTCTTCTCATATACCGGA+AGG - chr1_4:14153227-14153246 None:intergenic 40.0%
! TTTTCCTCTGTTTCGTACTC+CGG - chr1_4:14153679-14153698 None:intergenic 40.0%
!! TGATGAGCACTTTTTGGAGA+AGG + chr1_4:14153703-14153722 Msa0151790:CDS 40.0%
! CCATGTTGGGGTATTCAAAA+TGG - chr1_4:14153729-14153748 None:intergenic 40.0%
! CCATTTTGAATACCCCAACA+TGG + chr1_4:14153726-14153745 Msa0151790:CDS 40.0%
! TTTTGAATACCCCAACATGG+TGG + chr1_4:14153729-14153748 Msa0151790:CDS 40.0%
CAGGGGTTTCATGGTGAATT+TGG - chr1_4:14151028-14151047 None:intergenic 45.0%
CGCAAAACAGACTGGATAAC+TGG - chr1_4:14151087-14151106 None:intergenic 45.0%
CATACATCCGCAAAACAGAC+TGG - chr1_4:14151095-14151114 None:intergenic 45.0%
! TTTTGCGGATGTATGACACG+TGG + chr1_4:14151100-14151119 Msa0151790:five_prime_UTR 45.0%
TTTGCGGATGTATGACACGT+GGG + chr1_4:14151101-14151120 Msa0151790:five_prime_UTR 45.0%
CCAAAAAATGCAATCGCTGC+CGG + chr1_4:14151187-14151206 Msa0151790:five_prime_UTR 45.0%
!! TTCAATGTTTCTGGCACCGA+CGG - chr1_4:14151285-14151304 None:intergenic 45.0%
GCATAATCGCCGCTGAAAAA+AGG + chr1_4:14151419-14151438 Msa0151790:intron 45.0%
! GCACCGACACTTCTAATTGA+TGG + chr1_4:14151777-14151796 Msa0151790:intron 45.0%
GGATAAGCAGTTGAAGGTCA+TGG - chr1_4:14152377-14152396 None:intergenic 45.0%
GCTAAGGGATAAGCAGTTGA+AGG - chr1_4:14152383-14152402 None:intergenic 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG - chr1_4:14152398-14152417 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG - chr1_4:14152399-14152418 None:intergenic 45.0%
TCTCCAGTTCAACTTCTGGT+CGG - chr1_4:14152523-14152542 None:intergenic 45.0%
CTTCATCATCAGATCCACCA+GGG - chr1_4:14152922-14152941 None:intergenic 45.0%
TCTTCATCATCAGATCCACC+AGG - chr1_4:14152923-14152942 None:intergenic 45.0%
! CGCCAAACAATTTTCGCATC+TGG + chr1_4:14152956-14152975 Msa0151790:CDS 45.0%
ATCTGGTGCCTTACTCTTTC+TGG + chr1_4:14152973-14152992 Msa0151790:CDS 45.0%
AGGATCATACCACCATGTTG+GGG - chr1_4:14153741-14153760 None:intergenic 45.0%
CAGGATCATACCACCATGTT+GGG - chr1_4:14153742-14153761 None:intergenic 45.0%
TCAGGATCATACCACCATGT+TGG - chr1_4:14153743-14153762 None:intergenic 45.0%
AACATGGTGGTATGATCCTG+AGG + chr1_4:14153742-14153761 Msa0151790:CDS 45.0%
ACTGCTGTACGAAAATCCTC+AGG - chr1_4:14153761-14153780 None:intergenic 45.0%
GGCTTGCAGAGTTCAGATCT+GGG - chr1_4:14151145-14151164 None:intergenic 50.0%
AGGCTTGCAGAGTTCAGATC+TGG - chr1_4:14151146-14151165 None:intergenic 50.0%
!!! CCGGCAGCGATTGCATTTTT+TGG - chr1_4:14151190-14151209 None:intergenic 50.0%
! AAATGCAATCGCTGCCGGTT+TGG + chr1_4:14151192-14151211 Msa0151790:five_prime_UTR 50.0%
TCGCACTGAACTCATCTCAC+CGG + chr1_4:14151239-14151258 Msa0151790:five_prime_UTR 50.0%
!! TCAATGTTTCTGGCACCGAC+GGG - chr1_4:14151284-14151303 None:intergenic 50.0%
! TGGAAGTGTATGCTCAAGCG+CGG - chr1_4:14151384-14151403 None:intergenic 50.0%
!! TCTTTGAAGCCTCTTCGTGC+TGG + chr1_4:14151651-14151670 Msa0151790:CDS 50.0%
GCTGGTGGAAAAGGAATGTC+AGG + chr1_4:14151669-14151688 Msa0151790:CDS 50.0%
!! TAGAAGTGTCGGTGCTACAG+AGG - chr1_4:14151772-14151791 None:intergenic 50.0%
CCTAATAAGACCTGGGGGTT+GGG - chr1_4:14152423-14152442 None:intergenic 50.0%
TCCTAATAAGACCTGGGGGT+TGG - chr1_4:14152424-14152443 None:intergenic 50.0%
GAACCGACCAGAAGTTGAAC+TGG + chr1_4:14152517-14152536 Msa0151790:intron 50.0%
GGTCTCTCCAGTTCAACTTC+TGG - chr1_4:14152527-14152546 None:intergenic 50.0%
CTGGAGAGACCTCTGAGTAA+TGG + chr1_4:14152536-14152555 Msa0151790:intron 50.0%
TGTACCGGAGTACGAAACAG+AGG + chr1_4:14153672-14153691 Msa0151790:CDS 50.0%
TGGGAGAATGGAGAAGGGCA+AGG - chr1_4:14151008-14151027 None:intergenic 55.0%
TCAAGCGCGGTGCATGATAG+GGG - chr1_4:14151371-14151390 None:intergenic 55.0%
CTCAAGCGCGGTGCATGATA+GGG - chr1_4:14151372-14151391 None:intergenic 55.0%
TCAGCGGCGATTATGCAGCA+GGG - chr1_4:14151415-14151434 None:intergenic 55.0%
TTCAGCGGCGATTATGCAGC+AGG - chr1_4:14151416-14151435 None:intergenic 55.0%
TTGAAGCCTCTTCGTGCTGG+TGG + chr1_4:14151654-14151673 Msa0151790:CDS 55.0%
! CCTTTTCCACCAGCACGAAG+AGG - chr1_4:14151663-14151682 None:intergenic 55.0%
! CCTCTTCGTGCTGGTGGAAA+AGG + chr1_4:14151660-14151679 Msa0151790:CDS 55.0%
ATGGGCTCAAACCAGGACGA+AGG - chr1_4:14152358-14152377 None:intergenic 55.0%
GAAGGTCATGGGCTCAAACC+AGG - chr1_4:14152365-14152384 None:intergenic 55.0%
!! CCCAACCCCCAGGTCTTATT+AGG + chr1_4:14152420-14152439 Msa0151790:intron 55.0%
GGAAGTGGAGTAAAGCCACC+AGG + chr1_4:14152854-14152873 Msa0151790:CDS 55.0%
AGTGGAGTAAAGCCACCAGG+AGG + chr1_4:14152857-14152876 Msa0151790:CDS 55.0%
TCAGATCCACCAGGGCCATT+GGG - chr1_4:14152914-14152933 None:intergenic 55.0%
ATCAGATCCACCAGGGCCAT+TGG - chr1_4:14152915-14152934 None:intergenic 55.0%
ACTCGTGGGCAGGGGTTTCA+TGG - chr1_4:14151037-14151056 None:intergenic 60.0%
GAAACCCCTGCCCACGAGTT+CGG + chr1_4:14151038-14151057 Msa0151790:five_prime_UTR 60.0%
AGATCCGAACTCGTGGGCAG+GGG - chr1_4:14151045-14151064 None:intergenic 60.0%
CAGATCCGAACTCGTGGGCA+GGG - chr1_4:14151046-14151065 None:intergenic 60.0%
CGGAGCAGATCCGAACTCGT+GGG - chr1_4:14151051-14151070 None:intergenic 60.0%
CCACGAGTTCGGATCTGCTC+CGG + chr1_4:14151049-14151068 Msa0151790:five_prime_UTR 60.0%
! AAACTCCGGCGGCGGTTTTC+CGG - chr1_4:14151261-14151280 None:intergenic 60.0%
GCTCAAGCGCGGTGCATGAT+AGG - chr1_4:14151373-14151392 None:intergenic 60.0%
TATGCAGCAGGGAGTTGCGC+TGG - chr1_4:14151404-14151423 None:intergenic 60.0%
TGGGGGTTGGGTAGCTCAAC+TGG - chr1_4:14152411-14152430 None:intergenic 60.0%
AGTTGAGCTACCCAACCCCC+AGG + chr1_4:14152410-14152429 Msa0151790:intron 60.0%
GGAGTAAAGCCACCAGGAGG+AGG + chr1_4:14152860-14152879 Msa0151790:CDS 60.0%
GTAAAGCCACCAGGAGGAGG+AGG + chr1_4:14152863-14152882 Msa0151790:CDS 60.0%
CAGGAGGAGGAGGAGAAGGT+GGG + chr1_4:14152873-14152892 Msa0151790:CDS 60.0%
AGGAGGAGGAGGAGAAGGTG+GGG + chr1_4:14152874-14152893 Msa0151790:CDS 60.0%
GCAGATCCGAACTCGTGGGC+AGG - chr1_4:14151047-14151066 None:intergenic 65.0%
CCGGAGCAGATCCGAACTCG+TGG - chr1_4:14151052-14151071 None:intergenic 65.0%
TCTCACCGGAAAACCGCCGC+CGG + chr1_4:14151253-14151272 Msa0151790:five_prime_UTR 65.0%
!! CTGGCACCGACGGGAAACTC+CGG - chr1_4:14151275-14151294 None:intergenic 65.0%
CCTTCTCCTCCTCCTCCTGG+TGG - chr1_4:14152872-14152891 None:intergenic 65.0%
CCACCAGGAGGAGGAGGAGA+AGG + chr1_4:14152869-14152888 Msa0151790:CDS 65.0%
CCACCTTCTCCTCCTCCTCC+TGG - chr1_4:14152875-14152894 None:intergenic 65.0%
CCAGGAGGAGGAGGAGAAGG+TGG + chr1_4:14152872-14152891 Msa0151790:CDS 65.0%
GGAGGAGGAGGAGAAGGTGG+GGG + chr1_4:14152875-14152894 Msa0151790:CDS 65.0%
!! GGTGGTGGTGGCAGTCCCAA+TGG + chr1_4:14152896-14152915 Msa0151790:CDS 65.0%
! GCACCGACGGGAAACTCCGG+CGG - chr1_4:14151272-14151291 None:intergenic 70.0%
GGAGGAGGAGAAGGTGGGGG+TGG + chr1_4:14152878-14152897 Msa0151790:CDS 70.0%
GGAGGAGAAGGTGGGGGTGG+TGG + chr1_4:14152881-14152900 Msa0151790:CDS 70.0%
! GGAGAAGGTGGGGGTGGTGG+TGG + chr1_4:14152884-14152903 Msa0151790:CDS 70.0%
GGTGGCAGTCCCAATGGCCC+TGG + chr1_4:14152902-14152921 Msa0151790:CDS 70.0%
GGCAGTCCCAATGGCCCTGG+TGG + chr1_4:14152905-14152924 Msa0151790:CDS 70.0%
CCGACGGGAAACTCCGGCGG+CGG - chr1_4:14151269-14151288 None:intergenic 75.0%
CCGCCGCCGGAGTTTCCCGT+CGG + chr1_4:14151266-14151285 Msa0151790:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 14150997 14153814 14150997 ID=Msa0151790;Name=Msa0151790
chr1_4 mRNA 14150997 14153814 14150997 ID=Msa0151790-mRNA-1;Parent=Msa0151790;Name=Msa0151790-mRNA-1;_AED=0.17;_eAED=0.17;_QI=331|0.33|0.5|1|0.66|0.75|4|0|212
chr1_4 exon 14150997 14151316 14150997 ID=Msa0151790-mRNA-1:exon:5589;Parent=Msa0151790-mRNA-1
chr1_4 exon 14151496 14151704 14151496 ID=Msa0151790-mRNA-1:exon:5590;Parent=Msa0151790-mRNA-1
chr1_4 exon 14152791 14152994 14152791 ID=Msa0151790-mRNA-1:exon:5591;Parent=Msa0151790-mRNA-1
chr1_4 exon 14153578 14153814 14153578 ID=Msa0151790-mRNA-1:exon:5592;Parent=Msa0151790-mRNA-1
chr1_4 five_prime_UTR 14150997 14151316 14150997 ID=Msa0151790-mRNA-1:five_prime_utr;Parent=Msa0151790-mRNA-1
chr1_4 five_prime_UTR 14151496 14151506 14151496 ID=Msa0151790-mRNA-1:five_prime_utr;Parent=Msa0151790-mRNA-1
chr1_4 CDS 14151507 14151704 14151507 ID=Msa0151790-mRNA-1:cds;Parent=Msa0151790-mRNA-1
chr1_4 CDS 14152791 14152994 14152791 ID=Msa0151790-mRNA-1:cds;Parent=Msa0151790-mRNA-1
chr1_4 CDS 14153578 14153814 14153578 ID=Msa0151790-mRNA-1:cds;Parent=Msa0151790-mRNA-1
Gene Sequence

>Msa0151790

ATGAATACTGCTCAAGTTACAGCATTTCAACTTGGAATTTGTGTGAAAAATTCTAAATCATGTGTTCTGCAAATGAGTATTGTAAACTCTTTCCCTCAGATTCGGAATATTAGCATAAGAGATAAACCGTTATTTGGGTTGAAATCTTTGAAGCCTCTTCGTGCTGGTGGAAAAGGAATGTCAGGAAATAGTGATGAGGGACAATCAATAGAAGAAGTATTACGGAAGCAAATTCAAAAAGGTGAGTATTTAGACAATGGTGGAAGTGGAGTAAAGCCACCAGGAGGAGGAGGAGAAGGTGGGGGTGGTGGTGGCAGTCCCAATGGCCCTGGTGGATCTGATGATGAAGAAAGCTATGACACTCGCCAAACAATTTTCGCATCTGGTGCCTTACTCTTTCTGGAGCTTCTAAGCACAATTTTTGACTTTTTAAGGTTTATAGTTGGCTTAGGTCAGACTAGTCGAATTAAGCGTATCATGGTAAAATTGGGAAAATTGTACCGGAGTACGAAACAGAGGAAAATCACTGATGAGCACTTTTTGGAGAAGGCCATTTTGAATACCCCAACATGGTGGTATGATCCTGAGGATTTTCGTACAGCAGTTAAGAATTACTATGCATCAGATGCGGACGAATAA

Protein sequence

>Msa0151790

MNTAQVTAFQLGICVKNSKSCVLQMSIVNSFPQIRNISIRDKPLFGLKSLKPLRAGGKGMSGNSDEGQSIEEVLRKQIQKGEYLDNGGSGVKPPGGGGEGGGGGGSPNGPGGSDDEESYDTRQTIFASGALLFLELLSTIFDFLRFIVGLGQTSRIKRIMVKLGKLYRSTKQRKITDEHFLEKAILNTPTWWYDPEDFRTAVKNYYASDADE*