AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583810 MtrunA17_Chr8g0347221 94.017 468 11 2 1 452 1 467 0.0 858
Msa0583810 MtrunA17_Chr7g0249921 36.994 173 100 3 86 253 95 263 2.00e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583810 AT4G01050.1 64.171 374 125 6 1 372 1 367 4.43e-149 434
Msa0583810 AT4G01050.2 64.171 374 125 6 1 372 42 408 2.13e-148 434
Msa0583810 AT3G25480.1 36.686 169 105 1 79 247 63 229 2.88e-27 110

Find 130 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTTCTTTGAAGTTTA+AGG 0.087089 4_2:+2544188 Msa0583810:CDS
TTTGTCTCGGGGACAATTTC+AGG 0.169954 4_2:-2546867 None:intergenic
TTTGTCTCGGGGACAATTTC+AGG 0.169954 4_2:-2546915 None:intergenic
TTGATACATACTGAGTATTT+TGG 0.174722 4_2:-2547670 None:intergenic
TAAATCTGCTTATGCAATTA+AGG 0.182748 4_2:+2544969 Msa0583810:CDS
TCCAAGCTCAATGCTTTCTT+TGG 0.236005 4_2:-2545135 None:intergenic
TTCGGCACAGAGTTTATTTC+AGG 0.250133 4_2:-2546963 None:intergenic
AAAGCATTGAGCTTGGATTT+TGG 0.280576 4_2:+2545141 Msa0583810:CDS
CTCTCAAAGTTTGGAACTTA+AGG 0.298680 4_2:-2543548 None:intergenic
CTTGGGATTGCTGCAGCTAC+TGG 0.311101 4_2:+2545514 Msa0583810:CDS
GGTGGTGACATTGATGTTAA+TGG 0.311965 4_2:+2543871 Msa0583810:CDS
TGCTGGTGGTGTAGCTATAT+TGG 0.312430 4_2:+2543942 Msa0583810:CDS
GGACAATCTCCTAGTGCTTC+TGG 0.321123 4_2:+2543847 Msa0583810:CDS
CTTTGAGCTTCTAAATTTCA+TGG 0.329325 4_2:+2543520 Msa0583810:five_prime_UTR
TTTGTGAGGCTCTCAAAGTT+TGG 0.332707 4_2:-2543557 None:intergenic
TTAGTAAAGCATTTAACTTT+TGG 0.345594 4_2:+2548012 Msa0583810:three_prime_UTR
TGAAATTATGACATTACATA+TGG 0.354087 4_2:-2547041 None:intergenic
TATGTTGATTCATGAGAGTT+TGG 0.360585 4_2:+2547987 Msa0583810:three_prime_UTR
GATGGCTTGGCCGTTACTCT+TGG 0.362120 4_2:+2545496 Msa0583810:CDS
AAGCAGATTTAAATCCGTTA+AGG 0.366536 4_2:-2544957 None:intergenic
ACACCACCAGCAAGAATTAC+AGG 0.373462 4_2:-2543931 None:intergenic
TTGTGGAATGAGTGGCAAAA+TGG 0.375345 4_2:-2543450 None:intergenic
GTCTTATTGTTGGTGGAGGT+TGG 0.375445 4_2:-2546771 None:intergenic
TTTGAAGAAACCTAAGGCTT+GGG 0.375475 4_2:+2543990 Msa0583810:CDS
ATTTCATCAGCAAGCTCCTT+AGG 0.379190 4_2:-2546562 None:intergenic
ATGATGAGTTTGTTTCTTTG+TGG 0.384751 4_2:-2543467 None:intergenic
TTAACATATGAAGAAGCATT+AGG 0.389426 4_2:+2543826 Msa0583810:CDS
GGAGCTTGCTGATGAAATAA+AGG 0.391508 4_2:+2546567 Msa0583810:CDS
AGATGAAGGAGGTTTGAAAT+CGG 0.392959 4_2:-2547580 None:intergenic
CTGGCAGGATTATAGATTGT+AGG 0.394531 4_2:-2547709 None:intergenic
TTCTTCAAACCACCAACATT+TGG 0.394999 4_2:-2544114 None:intergenic
AGCAGATTTAAATCCGTTAA+GGG 0.402051 4_2:-2544956 None:intergenic
AGTAAAAGAATGTGTTGTTT+TGG 0.402239 4_2:-2543402 None:intergenic
GCTCAGTTGCTTGATATAAG+AGG 0.403750 4_2:+2544063 Msa0583810:CDS
GGGTATGGTGAAAGTGGTTT+AGG 0.407461 4_2:-2547020 None:intergenic
GTATGTTGAAGATGTTCTTC+TGG 0.410590 4_2:-2547728 None:intergenic
ATGGCTTGGCCGTTACTCTT+GGG 0.412279 4_2:+2545497 Msa0583810:CDS
ATGAAATTTAGAAGCTCAAA+GGG 0.415470 4_2:-2543518 None:intergenic
GTGAAACTCTAGGGCTTTGA+AGG 0.419099 4_2:-2547609 None:intergenic
GAGAACCCTGTAATTCTTGC+TGG 0.420485 4_2:+2543925 Msa0583810:CDS
GCAGAGTTAGTTACCCTTAA+CGG 0.420544 4_2:+2544943 Msa0583810:CDS
GAACACCAAGGTTGCTCCTA+AGG 0.431093 4_2:+2546546 Msa0583810:CDS
GAAACAATTCTCCAACTTGT+AGG 0.431254 4_2:+2545668 Msa0583810:CDS
AGCTATATTGGCAGTGCCAT+TGG 0.432928 4_2:+2543954 Msa0583810:CDS
TCAGTGGCAGTAACTTATAA+AGG 0.436972 4_2:+2544141 Msa0583810:CDS
GATTCAACACCCCAAGCCTT+AGG 0.440084 4_2:-2544000 None:intergenic
GGGTTTGGTGTGTAATGCAA+TGG 0.441968 4_2:-2543378 None:intergenic
CTTCAACATACATGAAACTT+AGG 0.443694 4_2:+2547740 Msa0583810:three_prime_UTR
GATTGCTGCAGCTACTGGAT+TGG 0.443820 4_2:+2545519 Msa0583810:CDS
GTTGAAGATGTTCTTCTGGC+AGG 0.447489 4_2:-2547724 None:intergenic
GAAGGAGATGGAGATGAAGG+AGG 0.453134 4_2:-2547591 None:intergenic
ATTGCTGCAGCTACTGGATT+GGG 0.454710 4_2:+2545520 Msa0583810:CDS
ACAGAGTTTATTTCAGGAGC+AGG 0.455724 4_2:-2546957 None:intergenic
TCTCCTAGTGCTTCTGGTGG+TGG 0.456230 4_2:+2543853 Msa0583810:CDS
GTGATGGAAGCCAGATTTGA+TGG 0.456441 4_2:+2544904 Msa0583810:intron
TTCTTCATATGTTAAAGCAT+TGG 0.457715 4_2:-2543818 None:intergenic
GATGAAGGAGGTTTGAAATC+GGG 0.461874 4_2:-2547579 None:intergenic
ATGAACAATGTAGTATTCTC+AGG 0.471873 4_2:-2544213 None:intergenic
TGCAGAATAGTGGTCTTCCT+TGG 0.474017 4_2:+2545106 Msa0583810:intron
TATAAAGGTGATGATAAGCC+AGG 0.475049 4_2:+2544156 Msa0583810:CDS
CCGCCAGCTGTAGCAAGCTC+TGG 0.476058 4_2:-2546819 None:intergenic
ATTTGATGGGAACTCTGAAC+TGG 0.481515 4_2:+2544918 Msa0583810:CDS
TTTGAAGGAGATGGAGATGA+AGG 0.482325 4_2:-2547594 None:intergenic
CTCTAGGGCTTTGAAGGAGA+TGG 0.485058 4_2:-2547603 None:intergenic
GGTTTGGTGTGTAATGCAAT+GGG 0.486379 4_2:-2543377 None:intergenic
AGTCCAGAGCTTGCTACAGC+TGG 0.490256 4_2:+2546816 Msa0583810:CDS
TGCAGGGAGAGTCTTATTGT+TGG 0.491625 4_2:-2546781 None:intergenic
ACCAAAGAAAGCATTGAGCT+TGG 0.491928 4_2:+2545134 Msa0583810:CDS
GGTGAAAATAGTAGAATTGA+GGG 0.495638 4_2:-2543611 None:intergenic
AGGGAGAGTCTTATTGTTGG+TGG 0.496184 4_2:-2546778 None:intergenic
CATTGGACCAACCTCAGAAA+AGG 0.496352 4_2:-2545551 None:intergenic
GGTTTAGTGGCACAAATGTA+AGG 0.504713 4_2:-2547821 None:intergenic
TGTGCCGAAAACTGAAACAA+AGG 0.505309 4_2:+2546977 Msa0583810:CDS
GAGAGTCTTATTGTTGGTGG+AGG 0.508957 4_2:-2546775 None:intergenic
GCTTTCTTTGGTTCAGTCCA+AGG 0.508994 4_2:-2545123 None:intergenic
GATACTATCAATGATGCAAT+CGG 0.519921 4_2:+2545174 Msa0583810:CDS
TGTAGTACAAAATTATGCTA+TGG 0.521992 4_2:+2543585 Msa0583810:exon
GAAAGTGGTTTAGGCTGCAC+AGG 0.522973 4_2:-2547011 None:intergenic
TATGACATTACATATGGGTA+TGG 0.525499 4_2:-2547035 None:intergenic
ATGGGAGAAGATAGAAAGAG+AGG 0.526558 4_2:-2543431 None:intergenic
CTTCGTACAAGTGAAACTCT+AGG 0.528032 4_2:-2547619 None:intergenic
ACATATGGGTATGGTGAAAG+TGG 0.528445 4_2:-2547026 None:intergenic
CTGTCAGATAGCACAGAAAG+AGG 0.530271 4_2:-2543634 None:intergenic
TGTGGAATGAGTGGCAAAAT+GGG 0.530600 4_2:-2543449 None:intergenic
AATTTAGAAGCTCAAAGGGT+TGG 0.532878 4_2:-2543514 None:intergenic
GGGTGAAAATAGTAGAATTG+AGG 0.533070 4_2:-2543612 None:intergenic
CATGAAATTTAGAAGCTCAA+AGG 0.535206 4_2:-2543519 None:intergenic
GCAATTAAGGATGGTGCAGA+AGG 0.540296 4_2:+2544982 Msa0583810:CDS
TTGACTGAGATTAGACAAGT+TGG 0.542880 4_2:+2544087 Msa0583810:CDS
AGAAGGACCACAAGGATGGC+AGG 0.544881 4_2:+2544999 Msa0583810:CDS
AAGCTCCTTAGGAGCAACCT+TGG 0.546190 4_2:-2546551 None:intergenic
ATTGCAGGAATCTGATGGCT+TGG 0.548308 4_2:+2545483 Msa0583810:intron
ACTGAGATTAGACAAGTTGG+TGG 0.549104 4_2:+2544090 Msa0583810:CDS
TCTTGAACTCTGCAGAATAG+TGG 0.549522 4_2:+2545096 Msa0583810:intron
GAAATTATGACATTACATAT+GGG 0.549758 4_2:-2547040 None:intergenic
TACGAAGAGAATTCTATAGC+AGG 0.550738 4_2:+2547635 Msa0583810:CDS
TAATGCAATGGGTGACACTT+AGG 0.561413 4_2:-2543366 None:intergenic
TGTCAGATAGCACAGAAAGA+GGG 0.564800 4_2:-2543633 None:intergenic
TTCCGGGAAAATTAGGACAT+CGG 0.564881 4_2:+2546735 Msa0583810:intron
TGATTGTGAACATTGTGTTG+TGG 0.565253 4_2:+2547851 Msa0583810:three_prime_UTR
ATGCAAAATTAGGTGCTGAT+GGG 0.571276 4_2:+2544037 Msa0583810:CDS
TATGCAAAATTAGGTGCTGA+TGG 0.573919 4_2:+2544036 Msa0583810:CDS
TGATGGAAGCCAGATTTGAT+GGG 0.580060 4_2:+2544905 Msa0583810:intron
TTCGTACAAGTGAAACTCTA+GGG 0.581063 4_2:-2547618 None:intergenic
TTGCAGCTGATCCTACAAGT+TGG 0.583303 4_2:-2545679 None:intergenic
TTGAAGAAACCTAAGGCTTG+GGG 0.585405 4_2:+2543991 Msa0583810:CDS
CAAGAAGCTTCTATTTGCTG+AGG 0.588875 4_2:+2545718 Msa0583810:CDS
TTGTTTCTTTGTGGAATGAG+TGG 0.592557 4_2:-2543458 None:intergenic
AACCCTGTAATTCTTGCTGG+TGG 0.593908 4_2:+2543928 Msa0583810:CDS
TCTGCTTATGCAATTAAGGA+TGG 0.593981 4_2:+2544973 Msa0583810:CDS
TTGTGAACATTGTGTTGTGG+AGG 0.597009 4_2:+2547854 Msa0583810:three_prime_UTR
GTGCAGAAGGACCACAAGGA+TGG 0.597232 4_2:+2544995 Msa0583810:CDS
GGTTGATTGCAGGAATCTGA+TGG 0.599719 4_2:+2545478 Msa0583810:intron
CCAGAGCTTGCTACAGCTGG+CGG 0.602467 4_2:+2546819 Msa0583810:CDS
GTCAGATAGCACAGAAAGAG+GGG 0.603525 4_2:-2543632 None:intergenic
TGCAGCAATCCCAAGAGTAA+CGG 0.604148 4_2:-2545506 None:intergenic
GTTGGTGGACCAAATGTTGG+TGG 0.607555 4_2:+2544105 Msa0583810:CDS
AGTACAAAATTATGCTATGG+AGG 0.608891 4_2:+2543588 Msa0583810:exon
AAAATCTGAGACAAAACCAA+TGG 0.615330 4_2:-2543970 None:intergenic
TCACCACCACCAGAAGCACT+AGG 0.618550 4_2:-2543856 None:intergenic
TGTACTACAGAAAGTTTGTG+AGG 0.620051 4_2:-2543571 None:intergenic
ATAAATACCTGCCATCCTTG+TGG 0.630600 4_2:-2545006 None:intergenic
ATAAAGGTGATGATAAGCCA+GGG 0.631344 4_2:+2544157 Msa0583810:CDS
CACCACCAGCAAGAATTACA+GGG 0.636596 4_2:-2543930 None:intergenic
CAAGTTGGTGGACCAAATGT+TGG 0.652710 4_2:+2544102 Msa0583810:CDS
CAATCTCCTAGTGCTTCTGG+TGG 0.655117 4_2:+2543850 Msa0583810:CDS
GATGGTGCAGAAGGACCACA+AGG 0.670156 4_2:+2544991 Msa0583810:CDS
TGGTTTGAAGAAGAAATCAG+TGG 0.684337 4_2:+2544125 Msa0583810:CDS
TCAGTTGTGAATGTTAACAA+TGG 0.693297 4_2:+2543787 Msa0583810:CDS
GGAAAATTAGGACATCGGAA+AGG 0.694122 4_2:+2546740 Msa0583810:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTAAATTATTATTAG+TGG + chr4_2:2544524-2544543 Msa0583810:intron 10.0%
!!! TATTCTTTAATTTAATAGAA+GGG - chr4_2:2545303-2545322 None:intergenic 10.0%
!! TATTAAATTAAAGAATACTA+TGG + chr4_2:2545306-2545325 Msa0583810:intron 10.0%
!! AACAATAATAATAAATGAAA+AGG + chr4_2:2546187-2546206 Msa0583810:intron 10.0%
!!! TCATTAAATTTTTAATTTGA+TGG + chr4_2:2546482-2546501 Msa0583810:intron 10.0%
!!! TTATTTTCTCAAATTATTAT+CGG + chr4_2:2547408-2547427 Msa0583810:intron 10.0%
!! ATATGAATATAAAACAAAAT+TGG - chr4_2:2547518-2547537 None:intergenic 10.0%
!!! TTTATCAAAGAATTTTCAAA+AGG + chr4_2:2543744-2543763 Msa0583810:CDS 15.0%
!!! TTATCAAAGAATTTTCAAAA+GGG + chr4_2:2543745-2543764 Msa0583810:CDS 15.0%
!!! GTATTCTTTAATTTAATAGA+AGG - chr4_2:2545304-2545323 None:intergenic 15.0%
!! ATAAATTATTATGTTTGTGT+CGG + chr4_2:2545954-2545973 Msa0583810:intron 15.0%
!!! TTAATATTGTTTTCTTTGAA+TGG + chr4_2:2546709-2546728 Msa0583810:intron 15.0%
!! AAAAATGCTTATGCAAAATT+AGG + chr4_2:2544027-2544046 Msa0583810:CDS 20.0%
!!! CAATTTTATTTGCAGAATTT+TGG + chr4_2:2544262-2544281 Msa0583810:intron 20.0%
!! TATATCATAATTCATAAGCA+TGG - chr4_2:2544306-2544325 None:intergenic 20.0%
!! TGAGTGTTTATAATTAATGT+CGG + chr4_2:2545457-2545476 Msa0583810:intron 20.0%
!! ATAAACATACAACAGAAAAA+TGG - chr4_2:2545831-2545850 None:intergenic 20.0%
!!! ATATATGAGTTAGTTTTGTA+AGG + chr4_2:2545913-2545932 Msa0583810:intron 20.0%
!!! TATATGAGTTAGTTTTGTAA+GGG + chr4_2:2545914-2545933 Msa0583810:intron 20.0%
!!! TTGAATTTCTTTTACCTATT+TGG - chr4_2:2546026-2546045 None:intergenic 20.0%
!! TAGGTAAAAGAAATTCAAAA+TGG + chr4_2:2546028-2546047 Msa0583810:intron 20.0%
!! TAAGATTAATCCAATTATAG+AGG - chr4_2:2546088-2546107 None:intergenic 20.0%
!! CTATAATTGGATTAATCTTA+CGG + chr4_2:2546088-2546107 Msa0583810:intron 20.0%
!!! TATAAGATCATATCTTTTTC+AGG - chr4_2:2546150-2546169 None:intergenic 20.0%
!!! TAAATTTTTAATTTGATGGC+AGG + chr4_2:2546486-2546505 Msa0583810:intron 20.0%
!! AAAACAATATTAAACAGGAA+GGG - chr4_2:2546702-2546721 None:intergenic 20.0%
!! CAAAGAAAACAATATTAAAC+AGG - chr4_2:2546707-2546726 None:intergenic 20.0%
!! GAAATTATGACATTACATAT+GGG - chr4_2:2547043-2547062 None:intergenic 20.0%
!! TGAAATTATGACATTACATA+TGG - chr4_2:2547044-2547063 None:intergenic 20.0%
!! ATCCAAAAATCTATCAAATA+GGG - chr4_2:2547153-2547172 None:intergenic 20.0%
!! GATGAAATACTTAATGAAAT+AGG + chr4_2:2547325-2547344 Msa0583810:intron 20.0%
!!! TTAGTAAAGCATTTAACTTT+TGG + chr4_2:2548012-2548031 Msa0583810:three_prime_UTR 20.0%
!!! AGTAAAAGAATGTGTTGTTT+TGG - chr4_2:2543405-2543424 None:intergenic 25.0%
! ATGAAATTTAGAAGCTCAAA+GGG - chr4_2:2543521-2543540 None:intergenic 25.0%
! TGTAGTACAAAATTATGCTA+TGG + chr4_2:2543585-2543604 Msa0583810:exon 25.0%
! TTCTTCATATGTTAAAGCAT+TGG - chr4_2:2543821-2543840 None:intergenic 25.0%
!!! TTAACATATGAAGAAGCATT+AGG + chr4_2:2543826-2543845 Msa0583810:CDS 25.0%
! GAAAAATTGGAAGATAAGTT+AGG + chr4_2:2544410-2544429 Msa0583810:intron 25.0%
! TTGAATGTAATCACATATGT+TGG - chr4_2:2544496-2544515 None:intergenic 25.0%
! TAAATCTGCTTATGCAATTA+AGG + chr4_2:2544969-2544988 Msa0583810:CDS 25.0%
! ATTTGAGCTTTCTCAAATTA+AGG + chr4_2:2545361-2545380 Msa0583810:intron 25.0%
! TATTATTGCATGTTGAGAAA+AGG - chr4_2:2545592-2545611 None:intergenic 25.0%
! CAACATGCAATAATACATTA+TGG + chr4_2:2545597-2545616 Msa0583810:intron 25.0%
!!! ATATGAGTTAGTTTTGTAAG+GGG + chr4_2:2545915-2545934 Msa0583810:intron 25.0%
! ATTAAGTGAAATAGGTAAAC+AGG + chr4_2:2545985-2546004 Msa0583810:intron 25.0%
!! AAGTTAATTTTGTGCCAAAT+AGG + chr4_2:2546009-2546028 Msa0583810:intron 25.0%
! ATTACATAAACAAGAAGAGT+TGG + chr4_2:2546245-2546264 Msa0583810:intron 25.0%
! GAAAAATGTTCTTCACTATT+AGG - chr4_2:2546411-2546430 None:intergenic 25.0%
! GAAAACAATATTAAACAGGA+AGG - chr4_2:2546703-2546722 None:intergenic 25.0%
!! TTTTCTTTGAATGGAATTTC+CGG + chr4_2:2546718-2546737 Msa0583810:intron 25.0%
! GATCCAAAAATCTATCAAAT+AGG - chr4_2:2547154-2547173 None:intergenic 25.0%
! TTAATTGAACGTAACTACAT+GGG - chr4_2:2547387-2547406 None:intergenic 25.0%
! ATTAATTGAACGTAACTACA+TGG - chr4_2:2547388-2547407 None:intergenic 25.0%
!! TTGATACATACTGAGTATTT+TGG - chr4_2:2547673-2547692 None:intergenic 25.0%
! AATGTTCACAATCACAAAAA+AGG - chr4_2:2547845-2547864 None:intergenic 25.0%
!!! AAAGAATGTGTTGTTTTGGT+GGG - chr4_2:2543401-2543420 None:intergenic 30.0%
!!! AAAAGAATGTGTTGTTTTGG+TGG - chr4_2:2543402-2543421 None:intergenic 30.0%
! ATGATGAGTTTGTTTCTTTG+TGG - chr4_2:2543470-2543489 None:intergenic 30.0%
CATGAAATTTAGAAGCTCAA+AGG - chr4_2:2543522-2543541 None:intergenic 30.0%
CTTTGAGCTTCTAAATTTCA+TGG + chr4_2:2543520-2543539 Msa0583810:five_prime_UTR 30.0%
AGTACAAAATTATGCTATGG+AGG + chr4_2:2543588-2543607 Msa0583810:exon 30.0%
GGTGAAAATAGTAGAATTGA+GGG - chr4_2:2543614-2543633 None:intergenic 30.0%
! CTTTGCATGAAAATTTTGTG+GGG - chr4_2:2543675-2543694 None:intergenic 30.0%
! GCTTTGCATGAAAATTTTGT+GGG - chr4_2:2543676-2543695 None:intergenic 30.0%
! AGCTTTGCATGAAAATTTTG+TGG - chr4_2:2543677-2543696 None:intergenic 30.0%
TCAGTTGTGAATGTTAACAA+TGG + chr4_2:2543787-2543806 Msa0583810:CDS 30.0%
!! GGTTTTGTAGATAGTGTTAT+AGG + chr4_2:2543892-2543911 Msa0583810:CDS 30.0%
! AAAATCTGAGACAAAACCAA+TGG - chr4_2:2543973-2543992 None:intergenic 30.0%
!! TCAGATTTTGAAGAAACCTA+AGG + chr4_2:2543984-2544003 Msa0583810:CDS 30.0%
!! GAAGCTTTCTTTGAAGTTTA+AGG + chr4_2:2544188-2544207 Msa0583810:CDS 30.0%
ATGAACAATGTAGTATTCTC+AGG - chr4_2:2544216-2544235 None:intergenic 30.0%
TTGTTCATTCTTGACAAGTA+AGG + chr4_2:2544228-2544247 Msa0583810:intron 30.0%
TAGACTGTAGTAAATAACTG+AGG + chr4_2:2544383-2544402 Msa0583810:intron 30.0%
TAACTGAGGTAGAGAAAAAT+TGG + chr4_2:2544397-2544416 Msa0583810:intron 30.0%
! TTGATCATTACTTCAGCTTT+TGG - chr4_2:2544642-2544661 None:intergenic 30.0%
! AATGACCACAATTTTCTGTT+TGG + chr4_2:2544664-2544683 Msa0583810:intron 30.0%
TTTCACCAAACAGAAAATTG+TGG - chr4_2:2544672-2544691 None:intergenic 30.0%
! CGTAATTTGACTTAACATGT+GGG + chr4_2:2544804-2544823 Msa0583810:intron 30.0%
! GTAATTTGACTTAACATGTG+GGG + chr4_2:2544805-2544824 Msa0583810:intron 30.0%
AGCAGATTTAAATCCGTTAA+GGG - chr4_2:2544959-2544978 None:intergenic 30.0%
AAGCAGATTTAAATCCGTTA+AGG - chr4_2:2544960-2544979 None:intergenic 30.0%
! TTGGCGAAGATAGAAAATTT+TGG - chr4_2:2545058-2545077 None:intergenic 30.0%
AATATGTGATGTGAGTGTAT+TGG - chr4_2:2545077-2545096 None:intergenic 30.0%
GATACTATCAATGATGCAAT+CGG + chr4_2:2545174-2545193 Msa0583810:CDS 30.0%
GGCAATAAGTAATAACTCAT+TGG - chr4_2:2545571-2545590 None:intergenic 30.0%
!! GTAAGTTTGTTTTTCTATGC+AGG + chr4_2:2545740-2545759 Msa0583810:intron 30.0%
AACATACAACAGAAAAATGG+TGG - chr4_2:2545828-2545847 None:intergenic 30.0%
TAATTTACACTCTCGTGTTA+TGG - chr4_2:2545891-2545910 None:intergenic 30.0%
AATTATTATGTTTGTGTCGG+TGG + chr4_2:2545957-2545976 Msa0583810:intron 30.0%
TGGCTAAGATTAAGTGAAAT+AGG + chr4_2:2545977-2545996 Msa0583810:intron 30.0%
ACCAACAATACCTCTATAAT+TGG + chr4_2:2546075-2546094 Msa0583810:intron 30.0%
!! TCCAATTATAGAGGTATTGT+TGG - chr4_2:2546079-2546098 None:intergenic 30.0%
GAAGTAAACATAAGCAAACA+CGG - chr4_2:2546345-2546364 None:intergenic 30.0%
!!! CTTGTTTTAGTGTTTTCTTC+CGG - chr4_2:2546513-2546532 None:intergenic 30.0%
! TAATGAGTTTTTGAACACCA+AGG + chr4_2:2546534-2546553 Msa0583810:CDS 30.0%
GCTCTTGCAACTAATTTATA+AGG - chr4_2:2546619-2546638 None:intergenic 30.0%
TTTCTTTGAATGGAATTTCC+GGG + chr4_2:2546719-2546738 Msa0583810:intron 30.0%
TATGACATTACATATGGGTA+TGG - chr4_2:2547038-2547057 None:intergenic 30.0%
AAAAATCTATCAAATAGGGC+TGG - chr4_2:2547149-2547168 None:intergenic 30.0%
! AGCCCTATTTGATAGATTTT+TGG + chr4_2:2547148-2547167 Msa0583810:intron 30.0%
ATCCTTTACTTCACATACTT+AGG - chr4_2:2547185-2547204 None:intergenic 30.0%
TATGTGTAATTGCAAAATGC+AGG - chr4_2:2547270-2547289 None:intergenic 30.0%
! CATCCTTTTCTTGCAAAAAT+GGG - chr4_2:2547309-2547328 None:intergenic 30.0%
! TCATCCTTTTCTTGCAAAAA+TGG - chr4_2:2547310-2547329 None:intergenic 30.0%
CTTCAACATACATGAAACTT+AGG + chr4_2:2547740-2547759 Msa0583810:three_prime_UTR 30.0%
CAATCACAAAAAAGGTTTAG+TGG - chr4_2:2547837-2547856 None:intergenic 30.0%
!!! TCAGTTTTGAATAAGCAACA+AGG + chr4_2:2547942-2547961 Msa0583810:three_prime_UTR 30.0%
!! TATGTTGATTCATGAGAGTT+TGG + chr4_2:2547987-2548006 Msa0583810:three_prime_UTR 30.0%
! TTGTTTCTTTGTGGAATGAG+TGG - chr4_2:2543461-2543480 None:intergenic 35.0%
AATTTAGAAGCTCAAAGGGT+TGG - chr4_2:2543517-2543536 None:intergenic 35.0%
! CTCTCAAAGTTTGGAACTTA+AGG - chr4_2:2543551-2543570 None:intergenic 35.0%
TGTACTACAGAAAGTTTGTG+AGG - chr4_2:2543574-2543593 None:intergenic 35.0%
GGGTGAAAATAGTAGAATTG+AGG - chr4_2:2543615-2543634 None:intergenic 35.0%
!! TTTTGAAGAAACCTAAGGCT+TGG + chr4_2:2543989-2544008 Msa0583810:CDS 35.0%
TTTGAAGAAACCTAAGGCTT+GGG + chr4_2:2543990-2544009 Msa0583810:CDS 35.0%
!! TATGCAAAATTAGGTGCTGA+TGG + chr4_2:2544036-2544055 Msa0583810:CDS 35.0%
!! ATGCAAAATTAGGTGCTGAT+GGG + chr4_2:2544037-2544056 Msa0583810:CDS 35.0%
TTGACTGAGATTAGACAAGT+TGG + chr4_2:2544087-2544106 Msa0583810:CDS 35.0%
TTCTTCAAACCACCAACATT+TGG - chr4_2:2544117-2544136 None:intergenic 35.0%
TGGTTTGAAGAAGAAATCAG+TGG + chr4_2:2544125-2544144 Msa0583810:CDS 35.0%
TCAGTGGCAGTAACTTATAA+AGG + chr4_2:2544141-2544160 Msa0583810:CDS 35.0%
TATAAAGGTGATGATAAGCC+AGG + chr4_2:2544156-2544175 Msa0583810:CDS 35.0%
ATAAAGGTGATGATAAGCCA+GGG + chr4_2:2544157-2544176 Msa0583810:CDS 35.0%
CACATATGTTGGTATCATGT+CGG - chr4_2:2544485-2544504 None:intergenic 35.0%
ATTGATGTCAGTGTTGTATC+CGG + chr4_2:2544553-2544572 Msa0583810:intron 35.0%
TTCATAGTCCAAATGAGTGT+TGG + chr4_2:2544591-2544610 Msa0583810:intron 35.0%
TCATAGTCCAAATGAGTGTT+GGG + chr4_2:2544592-2544611 Msa0583810:intron 35.0%
TACATAGGCTATGTTCTTTG+AGG + chr4_2:2544723-2544742 Msa0583810:intron 35.0%
! GCGTAATTTGACTTAACATG+TGG + chr4_2:2544803-2544822 Msa0583810:intron 35.0%
TCTGCTTATGCAATTAAGGA+TGG + chr4_2:2544973-2544992 Msa0583810:CDS 35.0%
!!! AAAGCATTGAGCTTGGATTT+TGG + chr4_2:2545141-2545160 Msa0583810:CDS 35.0%
! TTTTCAGACTGCAAAACAGT+TGG + chr4_2:2545272-2545291 Msa0583810:intron 35.0%
GATGTATTCAAACTCTCTCT+TGG + chr4_2:2545328-2545347 Msa0583810:intron 35.0%
! AGGATTTTTGCAAGCAAGAA+AGG + chr4_2:2545381-2545400 Msa0583810:intron 35.0%
! GGATTTTTGCAAGCAAGAAA+GGG + chr4_2:2545382-2545401 Msa0583810:intron 35.0%
! AATTAATGTCGGTTGATTGC+AGG + chr4_2:2545468-2545487 Msa0583810:intron 35.0%
CGTGACATTACTCTATTTGT+AGG + chr4_2:2545643-2545662 Msa0583810:intron 35.0%
GAAACAATTCTCCAACTTGT+AGG + chr4_2:2545668-2545687 Msa0583810:CDS 35.0%
!! GTTTGTTTTTCTATGCAGGA+TGG + chr4_2:2545744-2545763 Msa0583810:intron 35.0%
!! TTATAGAGGTATTGTTGGTG+AGG - chr4_2:2546074-2546093 None:intergenic 35.0%
! TCTTACGGTTTAAGTGTTGT+TGG + chr4_2:2546103-2546122 Msa0583810:intron 35.0%
TTTCTAATGACGCAAAGTCA+AGG - chr4_2:2546297-2546316 None:intergenic 35.0%
!!! TTTTAATTTGATGGCAGGAC+CGG + chr4_2:2546491-2546510 Msa0583810:intron 35.0%
ATGGAATTTCCGGGAAAATT+AGG + chr4_2:2546728-2546747 Msa0583810:intron 35.0%
!! TGATGCTTCTACTTTTGTCT+CGG - chr4_2:2546931-2546950 None:intergenic 35.0%
!! TCTGCCTTTGTTTCAGTTTT+CGG - chr4_2:2546984-2547003 None:intergenic 35.0%
TTACTTCACATACTTAGGCA+GGG - chr4_2:2547180-2547199 None:intergenic 35.0%
TTTACTTCACATACTTAGGC+AGG - chr4_2:2547181-2547200 None:intergenic 35.0%
TGCCTAAGTATGTGAAGTAA+AGG + chr4_2:2547180-2547199 Msa0583810:intron 35.0%
CTTCTGCCTAAGTATGTAAT+TGG - chr4_2:2547214-2547233 None:intergenic 35.0%
!! AGTCCCATTTTTGCAAGAAA+AGG + chr4_2:2547303-2547322 Msa0583810:intron 35.0%
ATGAAATAGGAGACAATGTC+CGG + chr4_2:2547338-2547357 Msa0583810:intron 35.0%
TACTGCAAGTCAAAAAAGAG+AGG - chr4_2:2547558-2547577 None:intergenic 35.0%
! AGATGAAGGAGGTTTGAAAT+CGG - chr4_2:2547583-2547602 None:intergenic 35.0%
TTCGTACAAGTGAAACTCTA+GGG - chr4_2:2547621-2547640 None:intergenic 35.0%
TACGAAGAGAATTCTATAGC+AGG + chr4_2:2547635-2547654 Msa0583810:CDS 35.0%
GTATGTTGAAGATGTTCTTC+TGG - chr4_2:2547731-2547750 None:intergenic 35.0%
TGATTGTGAACATTGTGTTG+TGG + chr4_2:2547851-2547870 Msa0583810:three_prime_UTR 35.0%
!! GGTTTGGTGTGTAATGCAAT+GGG - chr4_2:2543380-2543399 None:intergenic 40.0%
!!! ATGTGTTGTTTTGGTGGGTT+TGG - chr4_2:2543396-2543415 None:intergenic 40.0%
ATGGGAGAAGATAGAAAGAG+AGG - chr4_2:2543434-2543453 None:intergenic 40.0%
TGTGGAATGAGTGGCAAAAT+GGG - chr4_2:2543452-2543471 None:intergenic 40.0%
TTGTGGAATGAGTGGCAAAA+TGG - chr4_2:2543453-2543472 None:intergenic 40.0%
TTTGTGAGGCTCTCAAAGTT+TGG - chr4_2:2543560-2543579 None:intergenic 40.0%
TGTCAGATAGCACAGAAAGA+GGG - chr4_2:2543636-2543655 None:intergenic 40.0%
GGTGGTGACATTGATGTTAA+TGG + chr4_2:2543871-2543890 Msa0583810:CDS 40.0%
TTGAAGAAACCTAAGGCTTG+GGG + chr4_2:2543991-2544010 Msa0583810:CDS 40.0%
GCTCAGTTGCTTGATATAAG+AGG + chr4_2:2544063-2544082 Msa0583810:CDS 40.0%
! ACTGAGATTAGACAAGTTGG+TGG + chr4_2:2544090-2544109 Msa0583810:CDS 40.0%
GAAAGCTTCTTCAAAAACCC+TGG - chr4_2:2544177-2544196 None:intergenic 40.0%
! CATAGTCCAAATGAGTGTTG+GGG + chr4_2:2544593-2544612 Msa0583810:intron 40.0%
AAGTTTCCCCAACACTCATT+TGG - chr4_2:2544602-2544621 None:intergenic 40.0%
! AGTTTTACCAGTCACCACAT+AGG + chr4_2:2544699-2544718 Msa0583810:intron 40.0%
! GTTTTACCAGTCACCACATA+GGG + chr4_2:2544700-2544719 Msa0583810:intron 40.0%
CTGATTGAGTGAACTTGTGA+TGG + chr4_2:2544888-2544907 Msa0583810:intron 40.0%
TGATGGAAGCCAGATTTGAT+GGG + chr4_2:2544905-2544924 Msa0583810:intron 40.0%
TTCAGAGTTCCCATCAAATC+TGG - chr4_2:2544917-2544936 None:intergenic 40.0%
ATTTGATGGGAACTCTGAAC+TGG + chr4_2:2544918-2544937 Msa0583810:CDS 40.0%
GCAGAGTTAGTTACCCTTAA+CGG + chr4_2:2544943-2544962 Msa0583810:CDS 40.0%
ATAAATACCTGCCATCCTTG+TGG - chr4_2:2545009-2545028 None:intergenic 40.0%
TCTTGAACTCTGCAGAATAG+TGG + chr4_2:2545096-2545115 Msa0583810:intron 40.0%
!! ACCAAAGAAAGCATTGAGCT+TGG + chr4_2:2545134-2545153 Msa0583810:CDS 40.0%
TCCAAGCTCAATGCTTTCTT+TGG - chr4_2:2545138-2545157 None:intergenic 40.0%
TGCAATCGGAGTATGTATCT+TGG + chr4_2:2545188-2545207 Msa0583810:intron 40.0%
!!! GTATTAGCCTTTTCTGAGGT+TGG + chr4_2:2545544-2545563 Msa0583810:intron 40.0%
! CAAGAAGCTTCTATTTGCTG+AGG + chr4_2:2545718-2545737 Msa0583810:CDS 40.0%
ACAGAAAAATGGTGGCTTTC+TGG - chr4_2:2545820-2545839 None:intergenic 40.0%
! TACGGTTTAAGTGTTGTTGG+AGG + chr4_2:2546106-2546125 Msa0583810:intron 40.0%
! ACGGTTTAAGTGTTGTTGGA+GGG + chr4_2:2546107-2546126 Msa0583810:intron 40.0%
CATTGCATATGAGAGAGTAG+AGG - chr4_2:2546383-2546402 None:intergenic 40.0%
ATTTCATCAGCAAGCTCCTT+AGG - chr4_2:2546565-2546584 None:intergenic 40.0%
!! GGAGCTTGCTGATGAAATAA+AGG + chr4_2:2546567-2546586 Msa0583810:CDS 40.0%
GAGCAATGCATCACAATTGA+CGG + chr4_2:2546635-2546654 Msa0583810:intron 40.0%
TTCCGGGAAAATTAGGACAT+CGG + chr4_2:2546735-2546754 Msa0583810:intron 40.0%
! TTCCGATGTCCTAATTTTCC+CGG - chr4_2:2546740-2546759 None:intergenic 40.0%
GGAAAATTAGGACATCGGAA+AGG + chr4_2:2546740-2546759 Msa0583810:intron 40.0%
! GACTATTTTCTGTTGGTGCA+GGG - chr4_2:2546800-2546819 None:intergenic 40.0%
!!! AGCTCTGGACTATTTTCTGT+TGG - chr4_2:2546807-2546826 None:intergenic 40.0%
!! TGCTGCTTCTACTTTTGTCT+CGG - chr4_2:2546883-2546902 None:intergenic 40.0%
!! ATGCTTCTACTTTTGTCTCG+GGG - chr4_2:2546929-2546948 None:intergenic 40.0%
!! GATGCTTCTACTTTTGTCTC+GGG - chr4_2:2546930-2546949 None:intergenic 40.0%
ACAGAGTTTATTTCAGGAGC+AGG - chr4_2:2546960-2546979 None:intergenic 40.0%
TTCGGCACAGAGTTTATTTC+AGG - chr4_2:2546966-2546985 None:intergenic 40.0%
TGTGCCGAAAACTGAAACAA+AGG + chr4_2:2546977-2546996 Msa0583810:CDS 40.0%
ACATATGGGTATGGTGAAAG+TGG - chr4_2:2547029-2547048 None:intergenic 40.0%
TCTATCAAATAGGGCTGGAA+AGG - chr4_2:2547144-2547163 None:intergenic 40.0%
GACGTGCCAATTACATACTT+AGG + chr4_2:2547205-2547224 Msa0583810:intron 40.0%
GCCAATGTCTATATTGTGTC+CGG + chr4_2:2547440-2547459 Msa0583810:intron 40.0%
ACCGGACACAATATAGACAT+TGG - chr4_2:2547444-2547463 None:intergenic 40.0%
TGAAACACTTTCACAGACAC+CGG - chr4_2:2547462-2547481 None:intergenic 40.0%
! GATGAAGGAGGTTTGAAATC+GGG - chr4_2:2547582-2547601 None:intergenic 40.0%
TTTGAAGGAGATGGAGATGA+AGG - chr4_2:2547597-2547616 None:intergenic 40.0%
CTTCGTACAAGTGAAACTCT+AGG - chr4_2:2547622-2547641 None:intergenic 40.0%
CTGGCAGGATTATAGATTGT+AGG - chr4_2:2547712-2547731 None:intergenic 40.0%
GGTTTAGTGGCACAAATGTA+AGG - chr4_2:2547824-2547843 None:intergenic 40.0%
TTGTGAACATTGTGTTGTGG+AGG + chr4_2:2547854-2547873 Msa0583810:three_prime_UTR 40.0%
!! GGGTTTGGTGTGTAATGCAA+TGG - chr4_2:2543381-2543400 None:intergenic 45.0%
GTCAGATAGCACAGAAAGAG+GGG - chr4_2:2543635-2543654 None:intergenic 45.0%
CTGTCAGATAGCACAGAAAG+AGG - chr4_2:2543637-2543656 None:intergenic 45.0%
GAGAACCCTGTAATTCTTGC+TGG + chr4_2:2543925-2543944 Msa0583810:CDS 45.0%
AACCCTGTAATTCTTGCTGG+TGG + chr4_2:2543928-2543947 Msa0583810:CDS 45.0%
CACCACCAGCAAGAATTACA+GGG - chr4_2:2543933-2543952 None:intergenic 45.0%
ACACCACCAGCAAGAATTAC+AGG - chr4_2:2543934-2543953 None:intergenic 45.0%
! TGCTGGTGGTGTAGCTATAT+TGG + chr4_2:2543942-2543961 Msa0583810:CDS 45.0%
AGCTATATTGGCAGTGCCAT+TGG + chr4_2:2543954-2543973 Msa0583810:CDS 45.0%
!! CAAGTTGGTGGACCAAATGT+TGG + chr4_2:2544102-2544121 Msa0583810:CDS 45.0%
TGTCGGACACTAACACATGT+CGG - chr4_2:2544468-2544487 None:intergenic 45.0%
! TGAAGCACTAACACAGACAC+CGG - chr4_2:2544575-2544594 None:intergenic 45.0%
TATGTACCCTATGTGGTGAC+TGG - chr4_2:2544709-2544728 None:intergenic 45.0%
AGTCACCACATAGGGTACAT+AGG + chr4_2:2544708-2544727 Msa0583810:intron 45.0%
CATAGCCTATGTACCCTATG+TGG - chr4_2:2544716-2544735 None:intergenic 45.0%
TACGCAGACTGCAGATGTAT+CGG - chr4_2:2544788-2544807 None:intergenic 45.0%
! GTGATGGAAGCCAGATTTGA+TGG + chr4_2:2544904-2544923 Msa0583810:intron 45.0%
GCAATTAAGGATGGTGCAGA+AGG + chr4_2:2544982-2545001 Msa0583810:CDS 45.0%
TGCAGAATAGTGGTCTTCCT+TGG + chr4_2:2545106-2545125 Msa0583810:intron 45.0%
! GCTTTCTTTGGTTCAGTCCA+AGG - chr4_2:2545126-2545145 None:intergenic 45.0%
GCAAGCAAGAAAGGGAACAT+AGG + chr4_2:2545390-2545409 Msa0583810:intron 45.0%
GGTTGATTGCAGGAATCTGA+TGG + chr4_2:2545478-2545497 Msa0583810:intron 45.0%
ATTGCAGGAATCTGATGGCT+TGG + chr4_2:2545483-2545502 Msa0583810:intron 45.0%
TGCAGCAATCCCAAGAGTAA+CGG - chr4_2:2545509-2545528 None:intergenic 45.0%
ATTGCTGCAGCTACTGGATT+GGG + chr4_2:2545520-2545539 Msa0583810:CDS 45.0%
!!! GGGTGTATTAGCCTTTTCTG+AGG + chr4_2:2545540-2545559 Msa0583810:CDS 45.0%
CATTGGACCAACCTCAGAAA+AGG - chr4_2:2545554-2545573 None:intergenic 45.0%
TTGCAGCTGATCCTACAAGT+TGG - chr4_2:2545682-2545701 None:intergenic 45.0%
! CGGTTTAAGTGTTGTTGGAG+GGG + chr4_2:2546108-2546127 Msa0583810:intron 45.0%
! GTCTTATTGTTGGTGGAGGT+TGG - chr4_2:2546774-2546793 None:intergenic 45.0%
!! GAGAGTCTTATTGTTGGTGG+AGG - chr4_2:2546778-2546797 None:intergenic 45.0%
!! AGGGAGAGTCTTATTGTTGG+TGG - chr4_2:2546781-2546800 None:intergenic 45.0%
!! TGCAGGGAGAGTCTTATTGT+TGG - chr4_2:2546784-2546803 None:intergenic 45.0%
! GGACTATTTTCTGTTGGTGC+AGG - chr4_2:2546801-2546820 None:intergenic 45.0%
TTTGTCTCGGGGACAATTTC+AGG - chr4_2:2546870-2546889 None:intergenic 45.0%
!! CTGCTTCTACTTTTGTCTCG+GGG - chr4_2:2546881-2546900 None:intergenic 45.0%
!! GCTGCTTCTACTTTTGTCTC+GGG - chr4_2:2546882-2546901 None:intergenic 45.0%
TTTGTCTCGGGGACAATTTC+AGG - chr4_2:2546870-2546889 None:intergenic 45.0%
GGGTATGGTGAAAGTGGTTT+AGG - chr4_2:2547023-2547042 None:intergenic 45.0%
TTCACATACTTAGGCAGGGA+CGG - chr4_2:2547176-2547195 None:intergenic 45.0%
! CGTAACTACATGGGTTGTGT+CGG - chr4_2:2547378-2547397 None:intergenic 45.0%
AGAGAGGCAGAGTATGTGTT+AGG - chr4_2:2547542-2547561 None:intergenic 45.0%
!! GTGAAACTCTAGGGCTTTGA+AGG - chr4_2:2547612-2547631 None:intergenic 45.0%
GTTGAAGATGTTCTTCTGGC+AGG - chr4_2:2547727-2547746 None:intergenic 45.0%
!!! CTATTTATTATATATTATTT+TGG - chr4_2:2546224-2546243 None:intergenic 5.0%
!! ATTAAAAATTTAATGAAAAA+AGG - chr4_2:2546478-2546497 None:intergenic 5.0%
GGACAATCTCCTAGTGCTTC+TGG + chr4_2:2543847-2543866 Msa0583810:CDS 50.0%
CAATCTCCTAGTGCTTCTGG+TGG + chr4_2:2543850-2543869 Msa0583810:CDS 50.0%
GATTCAACACCCCAAGCCTT+AGG - chr4_2:2544003-2544022 None:intergenic 50.0%
! GTTGGTGGACCAAATGTTGG+TGG + chr4_2:2544105-2544124 Msa0583810:CDS 50.0%
! ATGGCTTGGCCGTTACTCTT+GGG + chr4_2:2545497-2545516 Msa0583810:CDS 50.0%
GATTGCTGCAGCTACTGGAT+TGG + chr4_2:2545519-2545538 Msa0583810:CDS 50.0%
! GGTATTGTTGGTGAGGCAGA+TGG - chr4_2:2546067-2546086 None:intergenic 50.0%
GAACACCAAGGTTGCTCCTA+AGG + chr4_2:2546546-2546565 Msa0583810:CDS 50.0%
AAGCTCCTTAGGAGCAACCT+TGG - chr4_2:2546554-2546573 None:intergenic 50.0%
GAAAGTGGTTTAGGCTGCAC+AGG - chr4_2:2547014-2547033 None:intergenic 50.0%
AGACAATGTCCGGTGTCTGA+CGG + chr4_2:2547348-2547367 Msa0583810:intron 50.0%
GAAGGAGATGGAGATGAAGG+AGG - chr4_2:2547594-2547613 None:intergenic 50.0%
!! CTCTAGGGCTTTGAAGGAGA+TGG - chr4_2:2547606-2547625 None:intergenic 50.0%
TCTCCTAGTGCTTCTGGTGG+TGG + chr4_2:2543853-2543872 Msa0583810:CDS 55.0%
!! TCACCACCACCAGAAGCACT+AGG - chr4_2:2543859-2543878 None:intergenic 55.0%
GATGGTGCAGAAGGACCACA+AGG + chr4_2:2544991-2545010 Msa0583810:CDS 55.0%
GTGCAGAAGGACCACAAGGA+TGG + chr4_2:2544995-2545014 Msa0583810:CDS 55.0%
AGAAGGACCACAAGGATGGC+AGG + chr4_2:2544999-2545018 Msa0583810:CDS 55.0%
! GATGGCTTGGCCGTTACTCT+TGG + chr4_2:2545496-2545515 Msa0583810:CDS 55.0%
CTTGGGATTGCTGCAGCTAC+TGG + chr4_2:2545514-2545533 Msa0583810:CDS 55.0%
!! AGTCCAGAGCTTGCTACAGC+TGG + chr4_2:2546816-2546835 Msa0583810:CDS 55.0%
GTCGGTATACCGTCAGACAC+CGG - chr4_2:2547360-2547379 None:intergenic 55.0%
!! TGAGGCAGATGGTGCTGCAG+GGG - chr4_2:2546056-2546075 None:intergenic 60.0%
!! GTGAGGCAGATGGTGCTGCA+GGG - chr4_2:2546057-2546076 None:intergenic 60.0%
!! CCAGAGCTTGCTACAGCTGG+CGG + chr4_2:2546819-2546838 Msa0583810:CDS 60.0%
!! GGTGAGGCAGATGGTGCTGC+AGG - chr4_2:2546058-2546077 None:intergenic 65.0%
CCGCCAGCTGTAGCAAGCTC+TGG - chr4_2:2546822-2546841 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 2543367 2548139 2543367 ID=Msa0583810;Name=Msa0583810
chr4_2 mRNA 2543367 2548139 2543367 ID=Msa0583810-mRNA-1;Parent=Msa0583810;Name=Msa0583810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=237|0.85|0.87|1|0.85|0.87|8|440|494
chr4_2 exon 2543367 2544244 2543367 ID=Msa0583810-mRNA-1:exon:697;Parent=Msa0583810-mRNA-1
chr4_2 exon 2544918 2545020 2544918 ID=Msa0583810-mRNA-1:exon:698;Parent=Msa0583810-mRNA-1
chr4_2 exon 2545111 2545197 2545111 ID=Msa0583810-mRNA-1:exon:699;Parent=Msa0583810-mRNA-1
chr4_2 exon 2545490 2545561 2545490 ID=Msa0583810-mRNA-1:exon:700;Parent=Msa0583810-mRNA-1
chr4_2 exon 2545665 2545739 2545665 ID=Msa0583810-mRNA-1:exon:701;Parent=Msa0583810-mRNA-1
chr4_2 exon 2546508 2546588 2546508 ID=Msa0583810-mRNA-1:exon:702;Parent=Msa0583810-mRNA-1
chr4_2 exon 2546750 2547051 2546750 ID=Msa0583810-mRNA-1:exon:703;Parent=Msa0583810-mRNA-1
chr4_2 exon 2547576 2548139 2547576 ID=Msa0583810-mRNA-1:exon:704;Parent=Msa0583810-mRNA-1
chr4_2 five_prime_UTR 2543367 2543603 2543367 ID=Msa0583810-mRNA-1:five_prime_utr;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2543604 2544244 2543604 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2544918 2545020 2544918 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2545111 2545197 2545111 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2545490 2545561 2545490 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2545665 2545739 2545665 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2546508 2546588 2546508 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2546750 2547051 2546750 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 CDS 2547576 2547699 2547576 ID=Msa0583810-mRNA-1:cds;Parent=Msa0583810-mRNA-1
chr4_2 three_prime_UTR 2547700 2548139 2547700 ID=Msa0583810-mRNA-1:three_prime_utr;Parent=Msa0583810-mRNA-1
Gene Sequence

>Msa0583810

ATGGAGGCCCTCAATTCTACTATTTTCACCCCTCTTTCTGTGCTATCTGACAGAACAAAACACAAACACCCCACAAAATTTTCATGCAAAGCTTCAAACTTTTCAACTTCAATCAACAAAAAACAGAACTTAAGAGAGTTTTTATCAAAGAATTTTCAAAAGGGTCTTTTTCTTGCAGCAGCTTCAGTTGTGAATGTTAACAATGGTGAATTTGCCAATGCTTTAACATATGAAGAAGCATTAGGACAATCTCCTAGTGCTTCTGGTGGTGGTGACATTGATGTTAATGGTTTTGTAGATAGTGTTATAGGCTTTGCAACTGAGAACCCTGTAATTCTTGCTGGTGGTGTAGCTATATTGGCAGTGCCATTGGTTTTGTCTCAGATTTTGAAGAAACCTAAGGCTTGGGGTGTTGAATCTGCTAAAAATGCTTATGCAAAATTAGGTGCTGATGGGAATGCTCAGTTGCTTGATATAAGAGGTTTGACTGAGATTAGACAAGTTGGTGGACCAAATGTTGGTGGTTTGAAGAAGAAATCAGTGGCAGTAACTTATAAAGGTGATGATAAGCCAGGGTTTTTGAAGAAGCTTTCTTTGAAGTTTAAGGAGCCTGAGAATACTACATTGTTCATTCTTGACAAATTTGATGGGAACTCTGAACTGGTTGCAGAGTTAGTTACCCTTAACGGATTTAAATCTGCTTATGCAATTAAGGATGGTGCAGAAGGACCACAAGGATGGCAGAATAGTGGTCTTCCTTGGACTGAACCAAAGAAAGCATTGAGCTTGGATTTTGGCAGTTTGACAGATACTATCAATGATGCAATCGGAGAATCTGATGGCTTGGCCGTTACTCTTGGGATTGCTGCAGCTACTGGATTGGGTGTATTAGCCTTTTCTGAGGTAGAAACAATTCTCCAACTTGTAGGATCAGCTGCAATTGTTCAGTTTGCAAGCAAGAAGCTTCTATTTGCTGAGGACCGGAAGAAAACACTAAAACAAGTTAATGAGTTTTTGAACACCAAGGTTGCTCCTAAGGAGCTTGCTGATGAAATAAAGGACATCGGAAAGGCTCTTCTACCAACCTCCACCAACAATAAGACTCTCCCTGCACCAACAGAAAATAGTCCAGAGCTTGCTACAGCTGGCGGAACTGTATTGAACGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCAGCAGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCATCAGCAGAACCTGCTCCTGAAATAAACTCTGTGCCGAAAACTGAAACAAAGGCAGAGTCAATTCCTGTGCAGCCTAAACCACTTTCACCATACCCATATGTAATTATCCCGATTTCAAACCTCCTTCATCTCCATCTCCTTCAAAGCCCTAGAGTTTCACTTGTACGAAGAGAATTCTATAGCAGGCAAAATAGTTATCCAAAATACTCAGTATGTATCAAGAGCTAG

Protein sequence

>Msa0583810

MEALNSTIFTPLSVLSDRTKHKHPTKFSCKASNFSTSINKKQNLREFLSKNFQKGLFLAAASVVNVNNGEFANALTYEEALGQSPSASGGGDIDVNGFVDSVIGFATENPVILAGGVAILAVPLVLSQILKKPKAWGVESAKNAYAKLGADGNAQLLDIRGLTEIRQVGGPNVGGLKKKSVAVTYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTLNGFKSAYAIKDGAEGPQGWQNSGLPWTEPKKALSLDFGSLTDTINDAIGESDGLAVTLGIAAATGLGVLAFSEVETILQLVGSAAIVQFASKKLLFAEDRKKTLKQVNEFLNTKVAPKELADEIKDIGKALLPTSTNNKTLPAPTENSPELATAGGTVLNAEATPEIVPETKVEAAAEATPEIVPETKVEASAEPAPEINSVPKTETKAESIPVQPKPLSPYPYVIIPISNLLHLHLLQSPRVSLVRREFYSRQNSYPKYSVCIKS*