AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024070 MtrunA17_Chr1g0177361 98.127 267 5 0 1 267 1 267 0.0 535
Msa0024070 MtrunA17_Chr7g0267151 86.056 251 25 3 23 267 19 265 2.97e-149 417
Msa0024070 MtrunA17_Chr4g0052651 31.111 180 114 3 76 250 6 180 1.47e-22 92.4
Msa0024070 MtrunA17_Chr4g0070091 32.867 143 87 3 90 231 87 221 1.21e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024070 AT5G06290.1 88.208 212 24 1 57 267 62 273 1.16e-139 394
Msa0024070 AT3G11630.1 90.686 204 18 1 65 267 63 266 6.51e-139 392
Msa0024070 AT5G06290.2 85.876 177 24 1 57 232 62 238 1.01e-109 317
Msa0024070 AT1G48130.1 30.682 176 117 2 76 250 6 177 7.89e-24 96.3
Msa0024070 AT3G26060.3 34.194 155 90 4 77 230 10 153 1.92e-16 75.1
Msa0024070 AT3G26060.1 33.758 157 88 5 77 230 72 215 4.02e-16 75.5
Msa0024070 AT3G26060.2 33.758 157 88 5 77 230 73 216 4.13e-16 75.5

Find 92 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAATAAATACCGAGATTT+TGG 0.099943 1_1:-46190028 Msa0024070:CDS
AATGGTTTAGGAAGAGAATT+AGG 0.120754 1_1:+46191463 None:intergenic
AGTAGAAGAAGAGGGTAATT+TGG 0.123336 1_1:+46191495 None:intergenic
ATTAATTTGTGAGTTATAAA+AGG 0.174455 1_1:-46188432 Msa0024070:three_prime_UTR
GAGAGAAAAGTGAGGATTTA+GGG 0.212388 1_1:+46191518 None:intergenic
GGAGAGAAAAGTGAGGATTT+AGG 0.216968 1_1:+46191517 None:intergenic
AAGTAATCTTTGCTAAGTTT+TGG 0.270982 1_1:+46188504 None:intergenic
TTCACCTTTGTTTGCCCAAC+AGG 0.278982 1_1:-46190170 Msa0024070:intron
GTAGAAGAAGAGGGTAATTT+GGG 0.293541 1_1:+46191496 None:intergenic
CCAGCTGGGCAAACTTCATC+TGG 0.306036 1_1:+46188561 None:intergenic
TCCCCAGGCTTCCATCCAGC+TGG 0.323033 1_1:+46188546 None:intergenic
GAAGGGAGAGAGAATGGTTT+AGG 0.342977 1_1:+46191451 None:intergenic
GGTTTCATGGACTTCTCCCC+AGG 0.362041 1_1:+46188531 None:intergenic
CGAGAAGAATGTTGAAGATT+GGG 0.366993 1_1:+46191412 None:intergenic
ACCATCAACAACTTGGGAAT+TGG 0.377059 1_1:-46188780 Msa0024070:CDS
TGCCCAGCTGGATGGAAGCC+TGG 0.378218 1_1:-46188549 Msa0024070:CDS
ACCAATTCCCAAGTTGTTGA+TGG 0.378833 1_1:+46188779 None:intergenic
ACAGCCTCTGCTTCAAAATC+AGG 0.381358 1_1:+46190417 None:intergenic
TGGTGTTCTCATTCCTGATC+AGG 0.383066 1_1:-46189263 Msa0024070:intron
AAATCCATATCAAAATCTTA+TGG 0.385045 1_1:-46189283 Msa0024070:CDS
CCAGATGAAGTTTGCCCAGC+TGG 0.388822 1_1:-46188561 Msa0024070:CDS
GCCCAGCTGGATGGAAGCCT+GGG 0.390182 1_1:-46188548 Msa0024070:CDS
GAGGTTGAAATGAAATGGTT+TGG 0.392399 1_1:+46191631 None:intergenic
TGCAGTTCTCGCATCTTGCA+TGG 0.415230 1_1:-46189372 Msa0024070:intron
GAAAGTGAAGGGAGAGAGAA+TGG 0.422789 1_1:+46191445 None:intergenic
ATGGTTTAGGAAGAGAATTA+GGG 0.424590 1_1:+46191464 None:intergenic
GCGAGAAGAATGTTGAAGAT+TGG 0.425870 1_1:+46191411 None:intergenic
TTAATTTGTGAGTTATAAAA+GGG 0.426669 1_1:-46188431 Msa0024070:three_prime_UTR
TGGTGACTTGAATTATCCTC+TGG 0.440023 1_1:-46189320 Msa0024070:CDS
ACCTGACTAACCAACCTGTT+GGG 0.441801 1_1:+46190156 None:intergenic
GATAGAAAGTCAGGTGGCCT+TGG 0.444253 1_1:-46189340 Msa0024070:CDS
AGGTTGAAATGAAATGGTTT+GGG 0.454570 1_1:+46191632 None:intergenic
ATGTTAGGACATACCTGATC+AGG 0.457169 1_1:+46189250 None:intergenic
GCTATGAGGTTGAAATGAAA+TGG 0.463603 1_1:+46191626 None:intergenic
TGACCGACATGCAGAGTTTG+AGG 0.464552 1_1:-46190049 Msa0024070:CDS
GCACTCTACCATCAACAACT+TGG 0.474230 1_1:-46188787 Msa0024070:CDS
GATGGAGAGAGTAGAAGAAG+AGG 0.477129 1_1:+46191486 None:intergenic
CCCCAGGCTTCCATCCAGCT+GGG 0.477973 1_1:+46188547 None:intergenic
TCAAACTCTCTGACTACATT+GGG 0.480605 1_1:-46190229 Msa0024070:CDS
CAGAGTGAGCTTCCATTGGT+TGG 0.486493 1_1:-46190450 Msa0024070:CDS
TGAGAAGAGAGAAGAAGCAG+AGG 0.489447 1_1:+46191549 None:intergenic
TGTTCATTATTGACAAGGAA+GGG 0.497591 1_1:-46188818 Msa0024070:CDS
GTTCAAACAGATAGAAAGTC+AGG 0.499615 1_1:-46189349 Msa0024070:CDS
GCAGTTCTCGCATCTTGCAT+GGG 0.501742 1_1:-46189371 Msa0024070:intron
CACTGAAACACCCAAAATCT+CGG 0.516581 1_1:+46190017 None:intergenic
CTCACAGAGTGAGCTTCCAT+TGG 0.519825 1_1:-46190454 Msa0024070:intron
GCAGGCCTTGCAGTATGTGC+AGG 0.522197 1_1:-46188589 Msa0024070:intron
ATGGAGAGAGTAGAAGAAGA+GGG 0.526901 1_1:+46191487 None:intergenic
GGCGAGTGAAGGAAAGTGAA+GGG 0.527862 1_1:+46191434 None:intergenic
CAAACAAAGGTGAAGTCCAA+TGG 0.528385 1_1:+46190179 None:intergenic
TTGAAGATTGGGGCGAGTGA+AGG 0.529886 1_1:+46191423 None:intergenic
AGTGGTGAAGCAAACTAAGT+TGG 0.531224 1_1:+46191676 None:intergenic
TTGTTCATTATTGACAAGGA+AGG 0.531673 1_1:-46188819 Msa0024070:CDS
TCCTAAAATTTGAAACCTCA+AGG 0.535675 1_1:-46188392 Msa0024070:three_prime_UTR
ATGAAGTTTGCCCAGCTGGA+TGG 0.536203 1_1:-46188557 Msa0024070:CDS
GTGGATGATGACGATGATGA+TGG 0.537898 1_1:+46191598 None:intergenic
GGGCGAGTGAAGGAAAGTGA+AGG 0.544606 1_1:+46191433 None:intergenic
CACTCTACCATCAACAACTT+GGG 0.546323 1_1:-46188786 Msa0024070:CDS
TTTAGGAAGAGAATTAGGGA+TGG 0.552710 1_1:+46191468 None:intergenic
GTTCATTATTGACAAGGAAG+GGG 0.557158 1_1:-46188817 Msa0024070:CDS
AAACAAAGGTGAAGTCCAAT+GGG 0.558564 1_1:+46190180 None:intergenic
GGTGCTGCATTTCCAACCAA+TGG 0.558663 1_1:+46190438 None:intergenic
ATTTAACAAGGAAGCTACTA+CGG 0.562177 1_1:+46191389 None:intergenic
TGATATGGATTTGGTGACAT+CGG 0.562898 1_1:+46189294 None:intergenic
GTCAAACTCTCTGACTACAT+TGG 0.566908 1_1:-46190230 Msa0024070:CDS
TTGCAGGGAATTGCATTGAG+AGG 0.579406 1_1:-46188843 Msa0024070:intron
GTTCTCCTGCACATACTGCA+AGG 0.582090 1_1:+46188584 None:intergenic
CAGCTGGGCAAACTTCATCT+GGG 0.584092 1_1:+46188562 None:intergenic
TGCATGTCGGTCACTGAAAG+CGG 0.585727 1_1:+46190059 None:intergenic
TGAGACAAAGAGAACACTAC+AGG 0.596255 1_1:-46188745 Msa0024070:intron
TGGATGATGACGATGATGAT+GGG 0.598342 1_1:+46191599 None:intergenic
GTGCAATTATTACCACCTTG+AGG 0.622215 1_1:+46188377 None:intergenic
GAGAAGAATGTTGAAGATTG+GGG 0.624972 1_1:+46191413 None:intergenic
CCAACCTGTTGGGCAAACAA+AGG 0.627442 1_1:+46190166 None:intergenic
TTGCCTCAAACTCTGCATGT+CGG 0.627947 1_1:+46190046 None:intergenic
AGCTGAGCATGCCATTGTGG+TGG 0.631408 1_1:+46191579 None:intergenic
CCCAGCTGGATGGAAGCCTG+GGG 0.636205 1_1:-46188547 Msa0024070:CDS
AGGATTGTTCATTATTGACA+AGG 0.639152 1_1:-46188823 Msa0024070:CDS
CAAATTAATACAGATGCACA+TGG 0.639498 1_1:+46188446 None:intergenic
AGTAGCTGAGCATGCCATTG+TGG 0.651607 1_1:+46191576 None:intergenic
TAGCAAAGATTACTTTGCCG+CGG 0.651716 1_1:-46188496 Msa0024070:CDS
TGATGATGGGAAGTGCTATG+AGG 0.662219 1_1:+46191612 None:intergenic
ATCGTCATCATCCACCACAA+TGG 0.663479 1_1:-46191590 Msa0024070:exon
TAATTTGGGAGAGAAAAGTG+AGG 0.670898 1_1:+46191510 None:intergenic
AGCTTACAGAGGATTTAACA+AGG 0.680115 1_1:+46191377 None:intergenic
AGGTGGTAATAATTGCACAC+TGG 0.684263 1_1:-46188372 Msa0024070:three_prime_UTR
GGGTGTTTCAGTGGACAGTG+TGG 0.684461 1_1:-46190007 Msa0024070:intron
GAGGATAATTCAAGTCACCA+AGG 0.702983 1_1:+46189323 None:intergenic
TAAAATTTGAAACCTCAAGG+TGG 0.707446 1_1:-46188389 Msa0024070:three_prime_UTR
CAAACAGATAGAAAGTCAGG+TGG 0.730426 1_1:-46189346 Msa0024070:CDS
CTGTCATTCACGTTACACCG+CGG 0.745413 1_1:+46188479 None:intergenic
TTGGTGACATCGGAAACCAG+AGG 0.770621 1_1:+46189304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATTTCAAAATCAAAAT+TGG + chr1_1:46188672-46188691 None:intergenic 15.0%
!! ATTGAACATTAATTGATTAT+TGG - chr1_1:46188753-46188772 Msa0024070:CDS 15.0%
!! TTGAACATTAATTGATTATT+GGG - chr1_1:46188754-46188773 Msa0024070:CDS 15.0%
!! ATCTTTAATCACTAAATATT+AGG - chr1_1:46189101-46189120 Msa0024070:intron 15.0%
!! TCTTTAATCACTAAATATTA+GGG - chr1_1:46189102-46189121 Msa0024070:intron 15.0%
!!! GTTTTTTCATTTTTATTATG+TGG - chr1_1:46189685-46189704 Msa0024070:intron 15.0%
!!! ATTAATTTGTGAGTTATAAA+AGG - chr1_1:46191570-46191589 Msa0024070:CDS 15.0%
!!! TTAATTTGTGAGTTATAAAA+GGG - chr1_1:46191571-46191590 Msa0024070:CDS 15.0%
!! ATTGGATAAATGAAAATTGT+GGG + chr1_1:46188654-46188673 None:intergenic 20.0%
!! AATTGGATAAATGAAAATTG+TGG + chr1_1:46188655-46188674 None:intergenic 20.0%
!!! TTATAATTCATGCTTGTTTT+TGG - chr1_1:46188905-46188924 Msa0024070:intron 20.0%
!!! TATAATTCATGCTTGTTTTT+GGG - chr1_1:46188906-46188925 Msa0024070:intron 20.0%
!! AAATAAATCCTTAAACGATA+TGG + chr1_1:46190195-46190214 None:intergenic 20.0%
!!! ATAAACTAGTTCTTACTATA+AGG - chr1_1:46190222-46190241 Msa0024070:CDS 20.0%
!!! ATAAGATTTTGATATGGATT+TGG + chr1_1:46190720-46190739 None:intergenic 20.0%
!! AAATCCATATCAAAATCTTA+TGG - chr1_1:46190719-46190738 Msa0024070:intron 20.0%
!!! TTACACTATTTTCATATGTT+AGG + chr1_1:46190770-46190789 None:intergenic 20.0%
!! AAAATAGTGTAACTTATGTA+TGG - chr1_1:46190778-46190797 Msa0024070:intron 20.0%
!!! AGTTTTTATTCGACTTTTTA+AGG - chr1_1:46190952-46190971 Msa0024070:intron 20.0%
!!! TTTGCAATTTCTTTTGATTA+TGG - chr1_1:46191694-46191713 Msa0024070:five_prime_UTR 20.0%
!!! TTCTAGTTCATATGCATTTT+CGG - chr1_1:46189071-46189090 Msa0024070:intron 25.0%
! CAAGTTGTTTATCCAAATTA+TGG - chr1_1:46189351-46189370 Msa0024070:CDS 25.0%
!!! TATTTTTGAGTAATCGCTTT+TGG - chr1_1:46189709-46189728 Msa0024070:intron 25.0%
! ATGATTTAGTCAATCAAACA+TGG + chr1_1:46189741-46189760 None:intergenic 25.0%
! TAAAGATTCCATATCGTTTA+AGG - chr1_1:46190184-46190203 Msa0024070:CDS 25.0%
! TTGAATAAGAATATTGTCAG+AGG - chr1_1:46190294-46190313 Msa0024070:intron 25.0%
! TGAATAAGAATATTGTCAGA+GGG - chr1_1:46190295-46190314 Msa0024070:intron 25.0%
! GGGAATTTCTTCATAAATAA+AGG - chr1_1:46190315-46190334 Msa0024070:intron 25.0%
! ATAAAAAAAGAAACAGATGC+TGG + chr1_1:46190587-46190606 None:intergenic 25.0%
!!! AACACCATAAGATTTTGATA+TGG + chr1_1:46190726-46190745 None:intergenic 25.0%
!!! ACTTTTTAAGGAATTGAACT+AGG - chr1_1:46190964-46190983 Msa0024070:intron 25.0%
!!! CTCATATTTCAATGTTGTTT+TGG - chr1_1:46191022-46191041 Msa0024070:intron 25.0%
! ACATTGCTTAATAGCATTAA+CGG - chr1_1:46191055-46191074 Msa0024070:intron 25.0%
! AGGTGATTATACAACTAATT+AGG - chr1_1:46191277-46191296 Msa0024070:intron 25.0%
!! AGTAATCTTTGCTAAGTTTT+GGG + chr1_1:46191500-46191519 None:intergenic 25.0%
!! AAGTAATCTTTGCTAAGTTT+TGG + chr1_1:46191501-46191520 None:intergenic 25.0%
AGGTTGAAATGAAATGGTTT+GGG + chr1_1:46188373-46188392 None:intergenic 30.0%
ATGGTTTAGGAAGAGAATTA+GGG + chr1_1:46188541-46188560 None:intergenic 30.0%
AATGGTTTAGGAAGAGAATT+AGG + chr1_1:46188542-46188561 None:intergenic 30.0%
ATTTAACAAGGAAGCTACTA+CGG + chr1_1:46188616-46188635 None:intergenic 30.0%
!! TCTAGTTCATATGCATTTTC+GGG - chr1_1:46189072-46189091 Msa0024070:intron 30.0%
CTTGGAGATATTATGGAATT+TGG + chr1_1:46189242-46189261 None:intergenic 30.0%
AAGCTATCTTGGAGATATTA+TGG + chr1_1:46189249-46189268 None:intergenic 30.0%
TAGAATGCGTTAATGCATTT+GGG - chr1_1:46189387-46189406 Msa0024070:intron 30.0%
GAAGTTTAAAGACTGTACTT+AGG + chr1_1:46189519-46189538 None:intergenic 30.0%
AAGTACAGTCTTTAAACTTC+TGG - chr1_1:46189519-46189538 Msa0024070:intron 30.0%
! TTTTGATCAGGAGTTTATCA+AGG - chr1_1:46189608-46189627 Msa0024070:intron 30.0%
AAGTAACACACATTATCGTT+AGG + chr1_1:46189909-46189928 None:intergenic 30.0%
! GCAATAAATACCGAGATTTT+GGG - chr1_1:46189975-46189994 Msa0024070:intron 30.0%
GAAAAATGAATCAACTGCAA+AGG - chr1_1:46190147-46190166 Msa0024070:intron 30.0%
AATCAACTGCAAAGGATTAT+AGG - chr1_1:46190155-46190174 Msa0024070:intron 30.0%
ATCAACTGCAAAGGATTATA+GGG - chr1_1:46190156-46190175 Msa0024070:intron 30.0%
TCTTTATGCTCTTATGTATG+TGG - chr1_1:46190539-46190558 Msa0024070:intron 30.0%
ATGTGGTATAACCTATGTAA+CGG - chr1_1:46190556-46190575 Msa0024070:intron 30.0%
ACTCAGAAAATTCTGCAAAT+GGG + chr1_1:46190905-46190924 None:intergenic 30.0%
ACATTGAAATATGAGCGTAA+AGG + chr1_1:46191017-46191036 None:intergenic 30.0%
CATTGCTTAATAGCATTAAC+GGG - chr1_1:46191056-46191075 Msa0024070:intron 30.0%
TAAAAATTCCCAATGTTGCA+GGG - chr1_1:46191144-46191163 Msa0024070:intron 30.0%
AGGATTGTTCATTATTGACA+AGG - chr1_1:46191179-46191198 Msa0024070:intron 30.0%
TTGTTCATTATTGACAAGGA+AGG - chr1_1:46191183-46191202 Msa0024070:intron 30.0%
TGTTCATTATTGACAAGGAA+GGG - chr1_1:46191184-46191203 Msa0024070:intron 30.0%
GATATTGTTCAATCTTGATG+TGG + chr1_1:46191304-46191323 None:intergenic 30.0%
CAAATTAATACAGATGCACA+TGG + chr1_1:46191559-46191578 None:intergenic 30.0%
! TCCTAAAATTTGAAACCTCA+AGG - chr1_1:46191610-46191629 Msa0024070:five_prime_UTR 30.0%
! ACCTTGAGGTTTCAAATTTT+AGG + chr1_1:46191614-46191633 None:intergenic 30.0%
! TAAAATTTGAAACCTCAAGG+TGG - chr1_1:46191613-46191632 Msa0024070:five_prime_UTR 30.0%
TGTGGGGTAAGATAAAAAAG+TGG + chr1_1:46188347-46188366 None:intergenic 35.0%
!! TGAAATGGTTTGGGTTTTGT+GGG + chr1_1:46188364-46188383 None:intergenic 35.0%
!! ATGAAATGGTTTGGGTTTTG+TGG + chr1_1:46188365-46188384 None:intergenic 35.0%
GAGGTTGAAATGAAATGGTT+TGG + chr1_1:46188374-46188393 None:intergenic 35.0%
GCTATGAGGTTGAAATGAAA+TGG + chr1_1:46188379-46188398 None:intergenic 35.0%
GAGAGAAAAGTGAGGATTTA+GGG + chr1_1:46188487-46188506 None:intergenic 35.0%
TAATTTGGGAGAGAAAAGTG+AGG + chr1_1:46188495-46188514 None:intergenic 35.0%
GTAGAAGAAGAGGGTAATTT+GGG + chr1_1:46188509-46188528 None:intergenic 35.0%
AGTAGAAGAAGAGGGTAATT+TGG + chr1_1:46188510-46188529 None:intergenic 35.0%
TTTAGGAAGAGAATTAGGGA+TGG + chr1_1:46188537-46188556 None:intergenic 35.0%
GAGAAGAATGTTGAAGATTG+GGG + chr1_1:46188592-46188611 None:intergenic 35.0%
CGAGAAGAATGTTGAAGATT+GGG + chr1_1:46188593-46188612 None:intergenic 35.0%
AGCTTACAGAGGATTTAACA+AGG + chr1_1:46188628-46188647 None:intergenic 35.0%
TTAGCATTTGTCAGTCTGTT+TGG - chr1_1:46188996-46189015 Msa0024070:intron 35.0%
TAGCATTTGTCAGTCTGTTT+GGG - chr1_1:46188997-46189016 Msa0024070:intron 35.0%
CTTGCTTTCATAAGCTATCT+TGG + chr1_1:46189260-46189279 None:intergenic 35.0%
! CAAACTGTTTTCTAGACAGA+CGG + chr1_1:46189319-46189338 None:intergenic 35.0%
TGTTTATCCAAATTATGGCC+TGG - chr1_1:46189356-46189375 Msa0024070:CDS 35.0%
CTAGAATGCGTTAATGCATT+TGG - chr1_1:46189386-46189405 Msa0024070:intron 35.0%
GACTAAATCATTGTCATTCC+AGG - chr1_1:46189750-46189769 Msa0024070:intron 35.0%
TCAAACTCTCTGACTACATT+GGG - chr1_1:46189773-46189792 Msa0024070:intron 35.0%
AAACAAAGGTGAAGTCCAAT+GGG + chr1_1:46189825-46189844 None:intergenic 35.0%
! GGCAATAAATACCGAGATTT+TGG - chr1_1:46189974-46189993 Msa0024070:intron 35.0%
ATTGACACACAACGTTAACT+AGG + chr1_1:46190060-46190079 None:intergenic 35.0%
TATGTAAAGACTGTGGACAT+TGG + chr1_1:46190438-46190457 None:intergenic 35.0%
TGTAGTCTATGTAAAGACTG+TGG + chr1_1:46190445-46190464 None:intergenic 35.0%
CAGTCTTTACATAGACTACA+AGG - chr1_1:46190445-46190464 Msa0024070:CDS 35.0%
ACACATACCCTTGAAAAACA+AGG - chr1_1:46190491-46190510 Msa0024070:intron 35.0%
!!! CAACAAGCCTTGTTTTTCAA+GGG + chr1_1:46190501-46190520 None:intergenic 35.0%
!!! ACAACAAGCCTTGTTTTTCA+AGG + chr1_1:46190502-46190521 None:intergenic 35.0%
!! AAAAACAAGGCTTGTTGTCT+TGG - chr1_1:46190504-46190523 Msa0024070:intron 35.0%
TTGTTGTCTTGGTATCTGAT+AGG - chr1_1:46190515-46190534 Msa0024070:intron 35.0%
GTTCAAACAGATAGAAAGTC+AGG - chr1_1:46190653-46190672 Msa0024070:intron 35.0%
!! TGATATGGATTTGGTGACAT+CGG + chr1_1:46190711-46190730 None:intergenic 35.0%
GACTCAGAAAATTCTGCAAA+TGG + chr1_1:46190906-46190925 None:intergenic 35.0%
! TGTCTTCCATTCCACTATTT+TGG - chr1_1:46191102-46191121 Msa0024070:intron 35.0%
! ACAAGTCCAAAATAGTGGAA+TGG + chr1_1:46191111-46191130 None:intergenic 35.0%
ATGACACAAGTCCAAAATAG+TGG + chr1_1:46191116-46191135 None:intergenic 35.0%
! CTGCAACATTGGGAATTTTT+AGG + chr1_1:46191145-46191164 None:intergenic 35.0%
CTAAAAATTCCCAATGTTGC+AGG - chr1_1:46191143-46191162 Msa0024070:intron 35.0%
GTTCATTATTGACAAGGAAG+GGG - chr1_1:46191185-46191204 Msa0024070:intron 35.0%
AGTGGTGAAGCAAACTAAGT+TGG + chr1_1:46188329-46188348 None:intergenic 40.0%
!! GAAATGGTTTGGGTTTTGTG+GGG + chr1_1:46188363-46188382 None:intergenic 40.0%
! TGGATGATGACGATGATGAT+GGG + chr1_1:46188406-46188425 None:intergenic 40.0%
GGAGAGAAAAGTGAGGATTT+AGG + chr1_1:46188488-46188507 None:intergenic 40.0%
ATGGAGAGAGTAGAAGAAGA+GGG + chr1_1:46188518-46188537 None:intergenic 40.0%
GCGAGAAGAATGTTGAAGAT+TGG + chr1_1:46188594-46188613 None:intergenic 40.0%
ATTGTGGGAAAAGCTTACAG+AGG + chr1_1:46188639-46188658 None:intergenic 40.0%
AGCATTTGTCAGTCTGTTTG+GGG - chr1_1:46188998-46189017 Msa0024070:intron 40.0%
TTTGTGAGTGTGTTTGAGAG+AGG - chr1_1:46189168-46189187 Msa0024070:intron 40.0%
GTATTCGTATTCGCGTAGAT+TGG + chr1_1:46189644-46189663 None:intergenic 40.0%
GTCAAACTCTCTGACTACAT+TGG - chr1_1:46189772-46189791 Msa0024070:intron 40.0%
! CATCCTCTTTTTCTACCCAT+TGG - chr1_1:46189807-46189826 Msa0024070:intron 40.0%
AGTCCAATGGGTAGAAAAAG+AGG + chr1_1:46189813-46189832 None:intergenic 40.0%
CAAACAAAGGTGAAGTCCAA+TGG + chr1_1:46189826-46189845 None:intergenic 40.0%
CACTGAAACACCCAAAATCT+CGG + chr1_1:46189988-46190007 None:intergenic 40.0%
CTAACTAATAGACAGACAGC+AGG + chr1_1:46190124-46190143 None:intergenic 40.0%
TGCTGGAATTTCCGTTACAT+AGG + chr1_1:46190570-46190589 None:intergenic 40.0%
GAACTGCACGATAGAAACAA+TGG + chr1_1:46190618-46190637 None:intergenic 40.0%
CAAACAGATAGAAAGTCAGG+TGG - chr1_1:46190656-46190675 Msa0024070:intron 40.0%
GAGGATAATTCAAGTCACCA+AGG + chr1_1:46190682-46190701 None:intergenic 40.0%
TGGTGACTTGAATTATCCTC+TGG - chr1_1:46190682-46190701 Msa0024070:intron 40.0%
ATGTTAGGACATACCTGATC+AGG + chr1_1:46190755-46190774 None:intergenic 40.0%
ATCTCTCCCTAAACGAACTT+AGG - chr1_1:46190852-46190871 Msa0024070:intron 40.0%
TCTCTCCCTAAACGAACTTA+GGG - chr1_1:46190853-46190872 Msa0024070:intron 40.0%
GCATACCCTAAGTTCGTTTA+GGG + chr1_1:46190861-46190880 None:intergenic 40.0%
CTTAGGGTATGCCATATCTA+CGG - chr1_1:46190869-46190888 Msa0024070:intron 40.0%
TTAGGGTATGCCATATCTAC+GGG - chr1_1:46190870-46190889 Msa0024070:intron 40.0%
! AGCATTAACGGGTCAAAAGT+TGG - chr1_1:46191067-46191086 Msa0024070:intron 40.0%
ATGCAATTCCCTGCAACATT+GGG + chr1_1:46191155-46191174 None:intergenic 40.0%
AATGCAATTCCCTGCAACAT+TGG + chr1_1:46191156-46191175 None:intergenic 40.0%
CACTCTACCATCAACAACTT+GGG - chr1_1:46191216-46191235 Msa0024070:intron 40.0%
ACCATCAACAACTTGGGAAT+TGG - chr1_1:46191222-46191241 Msa0024070:intron 40.0%
ACCAATTCCCAAGTTGTTGA+TGG + chr1_1:46191226-46191245 None:intergenic 40.0%
TGAGACAAAGAGAACACTAC+AGG - chr1_1:46191257-46191276 Msa0024070:intron 40.0%
!!! AAGTTTTGGGTCTGGTTTCA+TGG + chr1_1:46191487-46191506 None:intergenic 40.0%
!!! TCTTTGCTAAGTTTTGGGTC+TGG + chr1_1:46191495-46191514 None:intergenic 40.0%
TAGCAAAGATTACTTTGCCG+CGG - chr1_1:46191506-46191525 Msa0024070:CDS 40.0%
GTGCAATTATTACCACCTTG+AGG + chr1_1:46191628-46191647 None:intergenic 40.0%
AGGTGGTAATAATTGCACAC+TGG - chr1_1:46191630-46191649 Msa0024070:five_prime_UTR 40.0%
!! TGATGATGGGAAGTGCTATG+AGG + chr1_1:46188393-46188412 None:intergenic 45.0%
! GTGGATGATGACGATGATGA+TGG + chr1_1:46188407-46188426 None:intergenic 45.0%
ATCGTCATCATCCACCACAA+TGG - chr1_1:46188412-46188431 Msa0024070:three_prime_UTR 45.0%
TGAGAAGAGAGAAGAAGCAG+AGG + chr1_1:46188456-46188475 None:intergenic 45.0%
GATGGAGAGAGTAGAAGAAG+AGG + chr1_1:46188519-46188538 None:intergenic 45.0%
GAAGGGAGAGAGAATGGTTT+AGG + chr1_1:46188554-46188573 None:intergenic 45.0%
GAAAGTGAAGGGAGAGAGAA+TGG + chr1_1:46188560-46188579 None:intergenic 45.0%
GCATTTGTCAGTCTGTTTGG+GGG - chr1_1:46188999-46189018 Msa0024070:intron 45.0%
!!! AGCACCTGATTTTGAAGCAG+AGG - chr1_1:46189581-46189600 Msa0024070:intron 45.0%
ACAGCCTCTGCTTCAAAATC+AGG + chr1_1:46189588-46189607 None:intergenic 45.0%
!!! AGCAGAGGCTGTTTTTGATC+AGG - chr1_1:46189596-46189615 Msa0024070:intron 45.0%
TTCGTATTCGCGTAGATTGG+TGG + chr1_1:46189641-46189660 None:intergenic 45.0%
TGTAGTCAGAGAGTTTGACC+TGG + chr1_1:46189771-46189790 None:intergenic 45.0%
! TTCACCTTTGTTTGCCCAAC+AGG - chr1_1:46189832-46189851 Msa0024070:intron 45.0%
ACCTGACTAACCAACCTGTT+GGG + chr1_1:46189849-46189868 None:intergenic 45.0%
TTGCCTCAAACTCTGCATGT+CGG + chr1_1:46189959-46189978 None:intergenic 45.0%
!! CGAGATTTTGGGTGTTTCAG+TGG - chr1_1:46189986-46190005 Msa0024070:intron 45.0%
TGGTGTTCTCATTCCTGATC+AGG - chr1_1:46190739-46190758 Msa0024070:intron 45.0%
GGCATACCCTAAGTTCGTTT+AGG + chr1_1:46190862-46190881 None:intergenic 45.0%
TAGGGTATGCCATATCTACG+GGG - chr1_1:46190871-46190890 Msa0024070:intron 45.0%
GAGCGTAAAGGACAAGTGTT+GGG + chr1_1:46191005-46191024 None:intergenic 45.0%
TGAGCGTAAAGGACAAGTGT+TGG + chr1_1:46191006-46191025 None:intergenic 45.0%
TTGCAGGGAATTGCATTGAG+AGG - chr1_1:46191159-46191178 Msa0024070:intron 45.0%
GCACTCTACCATCAACAACT+TGG - chr1_1:46191215-46191234 Msa0024070:intron 45.0%
ATTGTCCCCTTGATCTGCAT+TGG - chr1_1:46191386-46191405 Msa0024070:CDS 45.0%
CAAGACCAATGCAGATCAAG+GGG + chr1_1:46191394-46191413 None:intergenic 45.0%
GCAAGACCAATGCAGATCAA+GGG + chr1_1:46191395-46191414 None:intergenic 45.0%
TGCAAGACCAATGCAGATCA+AGG + chr1_1:46191396-46191415 None:intergenic 45.0%
!! TTGATCTGCATTGGTCTTGC+AGG - chr1_1:46191395-46191414 Msa0024070:CDS 45.0%
AGTAGCTGAGCATGCCATTG+TGG + chr1_1:46188429-46188448 None:intergenic 50.0%
GGCGAGTGAAGGAAAGTGAA+GGG + chr1_1:46188571-46188590 None:intergenic 50.0%
TTGAAGATTGGGGCGAGTGA+AGG + chr1_1:46188582-46188601 None:intergenic 50.0%
CTCAGAGCCAGGCCATAATT+TGG + chr1_1:46189366-46189385 None:intergenic 50.0%
CAATGGAAGCTCACTCTGTG+AGG + chr1_1:46189550-46189569 None:intergenic 50.0%
CTCACAGAGTGAGCTTCCAT+TGG - chr1_1:46189548-46189567 Msa0024070:intron 50.0%
CAGAGTGAGCTTCCATTGGT+TGG - chr1_1:46189552-46189571 Msa0024070:intron 50.0%
! GGTGCTGCATTTCCAACCAA+TGG + chr1_1:46189567-46189586 None:intergenic 50.0%
CCAACCTGTTGGGCAAACAA+AGG + chr1_1:46189839-46189858 None:intergenic 50.0%
! CCTTTGTTTGCCCAACAGGT+TGG - chr1_1:46189836-46189855 Msa0024070:intron 50.0%
GACCTGACTAACCAACCTGT+TGG + chr1_1:46189850-46189869 None:intergenic 50.0%
TGCATGTCGGTCACTGAAAG+CGG + chr1_1:46189946-46189965 None:intergenic 50.0%
TGACCGACATGCAGAGTTTG+AGG - chr1_1:46189953-46189972 Msa0024070:intron 50.0%
TGCAGTTCTCGCATCTTGCA+TGG - chr1_1:46190630-46190649 Msa0024070:intron 50.0%
GCAGTTCTCGCATCTTGCAT+GGG - chr1_1:46190631-46190650 Msa0024070:intron 50.0%
GATAGAAAGTCAGGTGGCCT+TGG - chr1_1:46190662-46190681 Msa0024070:intron 50.0%
! TTGGTGACATCGGAAACCAG+AGG + chr1_1:46190701-46190720 None:intergenic 50.0%
GTATGCCATATCTACGGGGA+AGG - chr1_1:46190875-46190894 Msa0024070:intron 50.0%
GTTCTCCTGCACATACTGCA+AGG + chr1_1:46191421-46191440 None:intergenic 50.0%
CAGCTGGGCAAACTTCATCT+GGG + chr1_1:46191443-46191462 None:intergenic 50.0%
ATGAAGTTTGCCCAGCTGGA+TGG - chr1_1:46191445-46191464 Msa0024070:CDS 50.0%
CTGTCATTCACGTTACACCG+CGG + chr1_1:46191526-46191545 None:intergenic 50.0%
AGCTGAGCATGCCATTGTGG+TGG + chr1_1:46188426-46188445 None:intergenic 55.0%
GGGCGAGTGAAGGAAAGTGA+AGG + chr1_1:46188572-46188591 None:intergenic 55.0%
!! ACGCATTCTAGCTCAGAGCC+AGG + chr1_1:46189377-46189396 None:intergenic 55.0%
!! GCCCAACAGGTTGGTTAGTC+AGG - chr1_1:46189845-46189864 Msa0024070:intron 55.0%
GGGTGTTTCAGTGGACAGTG+TGG - chr1_1:46189995-46190014 Msa0024070:intron 55.0%
CAGTGGACAGTGTGGTACGT+TGG - chr1_1:46190003-46190022 Msa0024070:intron 55.0%
GAGAGCCTTCCCCGTAGATA+TGG + chr1_1:46190883-46190902 None:intergenic 55.0%
CCAGCTGGGCAAACTTCATC+TGG + chr1_1:46191444-46191463 None:intergenic 55.0%
CCAGATGAAGTTTGCCCAGC+TGG - chr1_1:46191441-46191460 Msa0024070:CDS 55.0%
GGTTTCATGGACTTCTCCCC+AGG + chr1_1:46191474-46191493 None:intergenic 55.0%
GCAGGCCTTGCAGTATGTGC+AGG - chr1_1:46191413-46191432 Msa0024070:CDS 60.0%
TGCCCAGCTGGATGGAAGCC+TGG - chr1_1:46191453-46191472 Msa0024070:CDS 65.0%
GCCCAGCTGGATGGAAGCCT+GGG - chr1_1:46191454-46191473 Msa0024070:CDS 65.0%
CCCCAGGCTTCCATCCAGCT+GGG + chr1_1:46191458-46191477 None:intergenic 65.0%
CCCAGCTGGATGGAAGCCTG+GGG - chr1_1:46191455-46191474 Msa0024070:CDS 65.0%
TCCCCAGGCTTCCATCCAGC+TGG + chr1_1:46191459-46191478 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 46188301 46191723 46188301 ID=Msa0024070;Name=Msa0024070
chr1_1 mRNA 46188301 46191723 46188301 ID=Msa0024070-mRNA-1;Parent=Msa0024070;Name=Msa0024070-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130|1|1|1|1|1|7|190|267
chr1_1 exon 46188301 46188607 46188301 ID=Msa0024070-mRNA-1:exon:13175;Parent=Msa0024070-mRNA-1
chr1_1 exon 46188746 46188859 46188746 ID=Msa0024070-mRNA-1:exon:13174;Parent=Msa0024070-mRNA-1
chr1_1 exon 46189264 46189389 46189264 ID=Msa0024070-mRNA-1:exon:13173;Parent=Msa0024070-mRNA-1
chr1_1 exon 46190008 46190087 46190008 ID=Msa0024070-mRNA-1:exon:13172;Parent=Msa0024070-mRNA-1
chr1_1 exon 46190171 46190252 46190171 ID=Msa0024070-mRNA-1:exon:13171;Parent=Msa0024070-mRNA-1
chr1_1 exon 46190395 46190469 46190395 ID=Msa0024070-mRNA-1:exon:13170;Parent=Msa0024070-mRNA-1
chr1_1 exon 46191384 46191723 46191384 ID=Msa0024070-mRNA-1:exon:13169;Parent=Msa0024070-mRNA-1
chr1_1 five_prime_UTR 46191594 46191723 46191594 ID=Msa0024070-mRNA-1:five_prime_utr;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46191384 46191593 46191384 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46190395 46190469 46190395 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46190171 46190252 46190171 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46190008 46190087 46190008 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46189264 46189389 46189264 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46188746 46188859 46188746 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 CDS 46188491 46188607 46188491 ID=Msa0024070-mRNA-1:cds;Parent=Msa0024070-mRNA-1
chr1_1 three_prime_UTR 46188301 46188490 46188301 ID=Msa0024070-mRNA-1:three_prime_utr;Parent=Msa0024070-mRNA-1
Gene Sequence

>Msa0024070

ATGGCATGCTCAGCTACTACTACCTCTGCTTCTTCTCTCTTCTCATCTCTAAACCCTAAATCCTCACTTTTCTCTCCCAAATTACCCTCTTCTTCTACTCTCTCCATCCCTAATTCTCTTCCTAAACCATTCTCTCTCCCTTCACTTTCCTTCACTCGCCCCAATCTTCAACATTCTTCTCGCCGTAGTAGCTTCCTTGTTAAATCCTCTAGTGAGCTTCCATTGGTTGGAAATGCAGCACCTGATTTTGAAGCAGAGGCTGTTTTTGATCAGGAGTTTATCAAGGTCAAACTCTCTGACTACATTGGGAAGAAGTATGTCATCCTCTTTTTCTACCCATTGGACTTCACCTTTGTTTGCCCAACAGAAATCACCGCTTTCAGTGACCGACATGCAGAGTTTGAGGCAATAAATACCGAGATTTTGGGTGTTTCAGTGGACAGTGTGTTCTCGCATCTTGCATGGGTTCAAACAGATAGAAAGTCAGGTGGCCTTGGTGACTTGAATTATCCTCTGGTTTCCGATGTCACCAAATCCATATCAAAATCTTATGGTGTTCTCATTCCTGATCAGGGAATTGCATTGAGAGGATTGTTCATTATTGACAAGGAAGGGGTTATTCAGCACTCTACCATCAACAACTTGGGAATTGGTAGAAGTGTTGATGAGACAAAGAGAACACTACAGGCCTTGCAGTATGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCTGGATGGAAGCCTGGGGAGAAGTCCATGAAACCAGACCCAAAACTTAGCAAAGATTACTTTGCCGCGGTGTAA

Protein sequence

>Msa0024070

MACSATTTSASSLFSSLNPKSSLFSPKLPSSSTLSIPNSLPKPFSLPSLSFTRPNLQHSSRRSSFLVKSSSELPLVGNAAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHAEFEAINTEILGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETKRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKDYFAAV*