AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297560 MtrunA17_Chr4g0054701 98.052 154 1 1 1 152 1 154 4.14e-104 294
Msa1297560 MtrunA17_Chr8g0381011 73.451 113 30 0 29 141 2 114 4.27e-56 173
Msa1297560 MtrunA17_Chr8g0381011 49.333 75 37 1 23 97 35 108 4.65e-14 65.9
Msa1297560 MtrunA17_Chr2g0303181 58.621 116 45 1 29 141 2 117 3.40e-46 148
Msa1297560 MtrunA17_Chr4g0047341 56.000 75 33 0 68 142 40 114 3.96e-23 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297560 AT1G32540.3 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1297560 AT1G32540.2 87.013 154 16 2 1 151 1 153 2.08e-82 239
Msa1297560 AT1G32540.1 94.215 121 7 0 28 148 64 184 8.21e-80 234
Msa1297560 AT1G32540.5 89.928 139 11 1 1 136 1 139 6.35e-77 226
Msa1297560 AT1G32540.4 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1297560 AT1G32540.6 91.954 87 4 1 20 103 20 106 2.02e-50 157
Msa1297560 AT1G32540.7 97.368 76 2 0 28 103 64 139 2.49e-48 153
Msa1297560 AT4G20380.2 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1297560 AT4G20380.7 60.484 124 38 3 29 141 7 130 2.57e-41 137
Msa1297560 AT4G20380.6 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297560 AT4G20380.3 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297560 AT4G20380.4 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297560 AT4G20380.1 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297560 AT4G20380.5 60.484 124 38 3 29 141 2 125 3.05e-41 136
Msa1297560 AT4G20380.9 60.656 122 37 3 29 139 2 123 7.16e-41 134
Msa1297560 AT4G20380.8 50.667 150 37 3 29 141 2 151 9.68e-38 128
Msa1297560 AT4G20380.8 46.154 78 39 1 70 144 4 81 3.75e-15 69.7
Msa1297560 AT4G21610.1 55.294 85 35 1 67 148 57 141 2.31e-27 100
Msa1297560 AT4G21610.2 60.274 73 29 0 67 139 57 129 3.32e-26 97.1

Find 67 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATTCTTCATCACTTC+TGG 0.189524 8_3:-57968655 Msa1297560:five_prime_UTR
CCTTTGACTCTCACTTTATC+TGG 0.202596 8_3:-57968579 Msa1297560:five_prime_UTR
AAAGGTCCAAGTACAGTAAA+AGG 0.221457 8_3:-57966540 Msa1297560:three_prime_UTR
TTATTTCTTTCACATACTTT+TGG 0.252427 8_3:-57966578 Msa1297560:three_prime_UTR
TTTGTTCTGTTTGTAGAATT+TGG 0.262955 8_3:-57968412 Msa1297560:five_prime_UTR
TATTGAGTTATGTGTGATAA+AGG 0.287226 8_3:+57968708 None:intergenic
GTACTTAAATATCAATCTTA+AGG 0.309191 8_3:-57966867 Msa1297560:three_prime_UTR
AACGTTTACTCTCATAATAT+TGG 0.313642 8_3:-57968968 None:intergenic
CAGAGTCAACTTGTGTGTTC+TGG 0.355331 8_3:-57967740 Msa1297560:CDS
ATGCTACTTATGTATCAATA+TGG 0.369271 8_3:-57967197 Msa1297560:CDS
TATATCAGTAAGATAACAAC+TGG 0.377081 8_3:-57966498 None:intergenic
AAGTATGTGAAAGAAATAAA+TGG 0.382512 8_3:+57966582 None:intergenic
TTTGTTGGAGGTGTTGTATA+TGG 0.389709 8_3:+57968298 None:intergenic
GAGAAAAGAAATGGTGGAAA+AGG 0.412620 8_3:+57968834 None:intergenic
ATTGCAAACTGCACATTTCA+CGG 0.413666 8_3:+57967166 None:intergenic
ATTGAGTTATGTGTGATAAA+GGG 0.422105 8_3:+57968709 None:intergenic
GGATAAGGAGCAAGTGGAAC+TGG 0.439901 8_3:+57968349 None:intergenic
AAGGAAACCTTTGAAGCAAA+AGG 0.443679 8_3:+57968533 None:intergenic
CATTACAGACTCTACAACCT+TGG 0.445898 8_3:-57966896 Msa1297560:three_prime_UTR
GTGTATTGTGACAGCAAATC+AGG 0.446436 8_3:-57967249 Msa1297560:intron
GCTGGAGGTGGAGTTGGATA+AGG 0.453949 8_3:+57968334 None:intergenic
GCTGGAGCAGGAGCTGGAGG+TGG 0.460297 8_3:+57968322 None:intergenic
CATACAGAAGTGGCTCCAAC+TGG 0.466065 8_3:+57967695 None:intergenic
AAAGTGAAGATACCATTTGT+TGG 0.467296 8_3:+57968283 None:intergenic
GGATGTACATGAGTAAAGTA+TGG 0.469461 8_3:+57967473 None:intergenic
GCAGGAGCTGGAGGTGGAGT+TGG 0.472992 8_3:+57968328 None:intergenic
GTCACAGCAGTGCCACCTCC+TGG 0.473850 8_3:-57967653 Msa1297560:intron
GAAATGGCTCAGTTAGTTTG+TGG 0.475051 8_3:-57967502 Msa1297560:CDS
AAAAGGGTAAAGCAGTCAAA+TGG 0.480658 8_3:-57966523 Msa1297560:three_prime_UTR
TGTATTCACAGGCACAGAAA+TGG 0.481941 8_3:-57967518 Msa1297560:intron
TATGGAGCTGGAGCAGGAGC+TGG 0.484907 8_3:+57968316 None:intergenic
CCAGATAAAGTGAGAGTCAA+AGG 0.509284 8_3:+57968579 None:intergenic
GAGAGAGAGAAAAGAAATGG+TGG 0.510108 8_3:+57968828 None:intergenic
TATACAACACCTCCAACAAA+TGG 0.513032 8_3:-57968295 Msa1297560:intron
GTTGTATATGGAGCTGGAGC+AGG 0.513741 8_3:+57968310 None:intergenic
TCACACAGTCAATCTAGCTC+TGG 0.518089 8_3:-57967419 Msa1297560:CDS
AACCTTCTTATGTATCCAGT+TGG 0.523909 8_3:-57967710 Msa1297560:CDS
GGAGGTGTTGTATATGGAGC+TGG 0.527136 8_3:+57968304 None:intergenic
AAGGTCCAAGTACAGTAAAA+GGG 0.533894 8_3:-57966539 Msa1297560:three_prime_UTR
ATAATAGTATATGATTTATG+AGG 0.535470 8_3:+57966927 None:intergenic
TCTTCCTCCAGCTTCATGCA+TGG 0.537787 8_3:-57968628 Msa1297560:five_prime_UTR
AATACAATCACCGTCACGCA+AGG 0.559660 8_3:+57966785 None:intergenic
TTTGCTAGAAAAGAAAATGA+AGG 0.559817 8_3:-57968938 Msa1297560:five_prime_UTR
ATTTACCTTACCAAAAGATG+TGG 0.560547 8_3:+57966680 None:intergenic
GTGAAGATACCATTTGTTGG+AGG 0.564232 8_3:+57968286 None:intergenic
CTCCAACTGGATACATAAGA+AGG 0.572621 8_3:+57967708 None:intergenic
AAACCTTTGAAGCAAAAGGT+TGG 0.575078 8_3:+57968537 None:intergenic
TGAAAGAAATAAATGGTGCT+TGG 0.582348 8_3:+57966589 None:intergenic
CTGCTCCGTCGTGCTTGCTG+AGG 0.583212 8_3:+57966963 None:intergenic
GGAGTTGGATAAGGAGCAAG+TGG 0.592607 8_3:+57968343 None:intergenic
TATTTCATCATACCAGGAGG+TGG 0.599736 8_3:+57967641 None:intergenic
AACAGCACAGCATACAGAAG+TGG 0.604154 8_3:+57967685 None:intergenic
GGAGCTGGAGCAGGAGCTGG+AGG 0.618511 8_3:+57968319 None:intergenic
ATGGCTCAGTTAGTTTGTGG+AGG 0.620989 8_3:-57967499 Msa1297560:CDS
ATACAATCACCGTCACGCAA+GGG 0.630625 8_3:+57966786 None:intergenic
ACAGTCAATCTAGCTCTGGA+AGG 0.636792 8_3:-57967415 Msa1297560:intron
ATGTCAACTGTGGTAACTGC+AGG 0.637282 8_3:-57967220 Msa1297560:CDS
AAAATAACTCTATACATGTG+AGG 0.644150 8_3:+57966810 None:intergenic
AATCATATACTATTATAGCA+AGG 0.645071 8_3:-57966920 Msa1297560:three_prime_UTR
AAAACCATGCATGAAGCTGG+AGG 0.646121 8_3:+57968624 None:intergenic
AACTATACTAACCCCAACTG+AGG 0.647011 8_3:+57967136 None:intergenic
GCAGGCCTCAGCAAGCACGA+CGG 0.676096 8_3:-57966968 Msa1297560:intron
ATTGAACACTCGTCGCTCCG+CGG 0.692743 8_3:+57967452 None:intergenic
ACTTTACTCATGTACATCCG+CGG 0.709515 8_3:-57967469 Msa1297560:CDS
CAGGTGGCACATGTCAACTG+TGG 0.714575 8_3:-57967230 Msa1297560:CDS
ATGGTGGAAAAGGATATGAG+TGG 0.731997 8_3:+57968844 None:intergenic
TATTGTGACAGCAAATCAGG+TGG 0.775426 8_3:-57967246 Msa1297560:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAAAATTTACTAAA+TGG - chr8_3:57967399-57967418 Msa1297560:intron 10.0%
!!! ATATAATTTTACTTGTACAA+TGG + chr8_3:57966707-57966726 None:intergenic 15.0%
!! ATAATAGTATATGATTTATG+AGG + chr8_3:57968541-57968560 None:intergenic 15.0%
!! GAAAAAAAAAGTGATTAACT+TGG + chr8_3:57966967-57966986 None:intergenic 20.0%
!!! TCTTATTTCTTATCCATATT+TGG - chr8_3:57967301-57967320 Msa1297560:intron 20.0%
!!! ATGTCTAATTTTAGTATTGA+TGG - chr8_3:57967347-57967366 Msa1297560:intron 20.0%
!! ATTCTTAAAACTACAAAGTA+CGG + chr8_3:57968191-57968210 None:intergenic 20.0%
!! AATCATATACTATTATAGCA+AGG - chr8_3:57968545-57968564 Msa1297560:five_prime_UTR 20.0%
!! GTACTTAAATATCAATCTTA+AGG - chr8_3:57968598-57968617 Msa1297560:five_prime_UTR 20.0%
!! AAGTATGTGAAAGAAATAAA+TGG + chr8_3:57968886-57968905 None:intergenic 20.0%
!!! TTATTTCTTTCACATACTTT+TGG - chr8_3:57968887-57968906 Msa1297560:five_prime_UTR 20.0%
!!! TCATTTTCTTTTCTAGCAAA+TGG + chr8_3:57966527-57966546 None:intergenic 25.0%
! TTTGCTAGAAAAGAAAATGA+AGG - chr8_3:57966527-57966546 Msa1297560:three_prime_UTR 25.0%
!!! AGTTTGCTAGAATGAAAAAA+GGG + chr8_3:57966664-57966683 None:intergenic 25.0%
!!! TAGTTTGCTAGAATGAAAAA+AGG + chr8_3:57966665-57966684 None:intergenic 25.0%
! ATTGAGTTATGTGTGATAAA+GGG + chr8_3:57966759-57966778 None:intergenic 25.0%
! TATTGAGTTATGTGTGATAA+AGG + chr8_3:57966760-57966779 None:intergenic 25.0%
!!! ATGCATGGTTTTTTATTTCA+AGG - chr8_3:57966852-57966871 Msa1297560:three_prime_UTR 25.0%
!! AAAAAAGTGATTAACTTGGT+AGG + chr8_3:57966963-57966982 None:intergenic 25.0%
! AGTAAAAGATTCATTCAAGA+GGG + chr8_3:57966989-57967008 None:intergenic 25.0%
! TAGTAAAAGATTCATTCAAG+AGG + chr8_3:57966990-57967009 None:intergenic 25.0%
!! ACTATATTTCTTCATTTTCC+AGG - chr8_3:57967006-57967025 Msa1297560:intron 25.0%
! TTTGTTCTGTTTGTAGAATT+TGG - chr8_3:57967053-57967072 Msa1297560:intron 25.0%
!!! TTGATGCATGTTCTTTATTT+TGG - chr8_3:57967232-57967251 Msa1297560:CDS 25.0%
! ACAAAATTTACTAAATGGAG+AGG - chr8_3:57967404-57967423 Msa1297560:intron 25.0%
! TCCAATTTCTTATCAGATAA+AGG - chr8_3:57967438-57967457 Msa1297560:CDS 25.0%
! CCAATTTCTTATCAGATAAA+GGG - chr8_3:57967439-57967458 Msa1297560:CDS 25.0%
!! GCTTTTTGTTAAAATCACAT+AGG + chr8_3:57967581-57967600 None:intergenic 25.0%
!! AAAAATGTTGTTTGAATGCT+AGG - chr8_3:57967698-57967717 Msa1297560:CDS 25.0%
!! ATGCTACTTATGTATCAATA+TGG - chr8_3:57968268-57968287 Msa1297560:intron 25.0%
! TCAAAATAGAAAAGAGGAAA+AGG + chr8_3:57968370-57968389 None:intergenic 25.0%
! TTCTCATCAAAATAGAAAAG+AGG + chr8_3:57968376-57968395 None:intergenic 25.0%
! TATTTAAGTACCAAAAACCA+AGG + chr8_3:57968589-57968608 None:intergenic 25.0%
! AAAATAACTCTATACATGTG+AGG + chr8_3:57968658-57968677 None:intergenic 25.0%
!!! TTAAGCGTTTTTGTTTGAAT+TGG - chr8_3:57968701-57968720 Msa1297560:five_prime_UTR 25.0%
!!! TTCTACTTTTGTTCAATAAG+TGG - chr8_3:57968814-57968833 Msa1297560:five_prime_UTR 25.0%
GGATGTACACTAAAAAGAAA+TGG + chr8_3:57966603-57966622 None:intergenic 30.0%
CTTAAATTCTTCATCACTTC+TGG - chr8_3:57966810-57966829 Msa1297560:three_prime_UTR 30.0%
!!! CATGGTTTTTTATTTCAAGG+AGG - chr8_3:57966855-57966874 Msa1297560:three_prime_UTR 30.0%
! ATTAACTTGGTAGGTTGAAA+AGG + chr8_3:57966954-57966973 None:intergenic 30.0%
! TTTTCCAGGAGTTGAAAAAA+TGG - chr8_3:57967020-57967039 Msa1297560:intron 30.0%
TTTCCAGGAGTTGAAAAAAT+GGG - chr8_3:57967021-57967040 Msa1297560:intron 30.0%
AAAGTGAAGATACCATTTGT+TGG + chr8_3:57967185-57967204 None:intergenic 30.0%
ATAAAGAACATGCATCAATG+AGG + chr8_3:57967230-57967249 None:intergenic 30.0%
TACTTTATGCTGATGAATTG+TGG - chr8_3:57967264-57967283 Msa1297560:intron 30.0%
TCTTATCCATATTTGGAAGA+AGG - chr8_3:57967308-57967327 Msa1297560:intron 30.0%
TTTAGTCCTTCTTCCAAATA+TGG + chr8_3:57967317-57967336 None:intergenic 30.0%
CCCTTTATCTGATAAGAAAT+TGG + chr8_3:57967442-57967461 None:intergenic 30.0%
TCTAAACATGCACTAAAGAT+AGG + chr8_3:57967527-57967546 None:intergenic 30.0%
CCATACCATAAAACATTAAG+TGG + chr8_3:57967635-57967654 None:intergenic 30.0%
! CCACTTAATGTTTTATGGTA+TGG - chr8_3:57967632-57967651 Msa1297560:intron 30.0%
! TGTTTTATGGTATGGAAATG+TGG - chr8_3:57967640-57967659 Msa1297560:intron 30.0%
GAAGAATATTTCATCATACC+AGG + chr8_3:57967833-57967852 None:intergenic 30.0%
AGAGACCTAATAACTGATAA+GGG + chr8_3:57967856-57967875 None:intergenic 30.0%
TAGAGACCTAATAACTGATA+AGG + chr8_3:57967857-57967876 None:intergenic 30.0%
ATATCACAAAGTGAAGATTC+AGG + chr8_3:57967910-57967929 None:intergenic 30.0%
GTGAATACATCAGGTAAATA+TGG + chr8_3:57967936-57967955 None:intergenic 30.0%
TATTTACCTGATGTATTCAC+AGG - chr8_3:57967936-57967955 Msa1297560:intron 30.0%
!!! AAACTATGTCTTGTTTTGCA+AGG + chr8_3:57968420-57968439 None:intergenic 30.0%
! TATGCAAAAACCACATCTTT+TGG - chr8_3:57968775-57968794 Msa1297560:five_prime_UTR 30.0%
! AAAAACCACATCTTTTGGTA+AGG - chr8_3:57968780-57968799 Msa1297560:five_prime_UTR 30.0%
ATTTACCTTACCAAAAGATG+TGG + chr8_3:57968788-57968807 None:intergenic 30.0%
TGAAAGAAATAAATGGTGCT+TGG + chr8_3:57968879-57968898 None:intergenic 30.0%
! GAGAAAAGAAATGGTGGAAA+AGG + chr8_3:57966634-57966653 None:intergenic 35.0%
TAAAAAACCATGCATGAAGC+TGG + chr8_3:57966847-57966866 None:intergenic 35.0%
!! AAACCTTTGAAGCAAAAGGT+TGG + chr8_3:57966931-57966950 None:intergenic 35.0%
!! AAGGAAACCTTTGAAGCAAA+AGG + chr8_3:57966935-57966954 None:intergenic 35.0%
!! TTTGTTGGAGGTGTTGTATA+TGG + chr8_3:57967170-57967189 None:intergenic 35.0%
TATACAACACCTCCAACAAA+TGG - chr8_3:57967170-57967189 Msa1297560:CDS 35.0%
TTATGCTGATGAATTGTGGT+TGG - chr8_3:57967268-57967287 Msa1297560:intron 35.0%
TCAGATAAAGGGAGATATGT+TGG - chr8_3:57967450-57967469 Msa1297560:CDS 35.0%
!!! CAGTGCCACTTAATGTTTTA+TGG - chr8_3:57967627-57967646 Msa1297560:intron 35.0%
AACCTTCTTATGTATCCAGT+TGG - chr8_3:57967755-57967774 Msa1297560:intron 35.0%
GAATATTTCATCATACCAGG+AGG + chr8_3:57967830-57967849 None:intergenic 35.0%
TCTTCCCCTTATCAGTTATT+AGG - chr8_3:57967848-57967867 Msa1297560:intron 35.0%
GAGACCTAATAACTGATAAG+GGG + chr8_3:57967855-57967874 None:intergenic 35.0%
GGATGTACATGAGTAAAGTA+TGG + chr8_3:57967995-57968014 None:intergenic 35.0%
CGAGTTAAATTGCTGTGATT+CGG - chr8_3:57968162-57968181 Msa1297560:intron 35.0%
ATTGCAAACTGCACATTTCA+CGG + chr8_3:57968302-57968321 None:intergenic 35.0%
! TGCAATTTTGTTACCTCAGT+TGG - chr8_3:57968316-57968335 Msa1297560:CDS 35.0%
! GCAATTTTGTTACCTCAGTT+GGG - chr8_3:57968317-57968336 Msa1297560:CDS 35.0%
! CAATTTTGTTACCTCAGTTG+GGG - chr8_3:57968318-57968337 Msa1297560:CDS 35.0%
GAAAAGAGGAAAAGGTAGTA+TGG + chr8_3:57968362-57968381 None:intergenic 35.0%
! ATGTTACTGAATGATGATGC+AGG - chr8_3:57968479-57968498 Msa1297560:intron 35.0%
!! CTGCTATATTTTTGTGTGTG+TGG - chr8_3:57968849-57968868 Msa1297560:five_prime_UTR 35.0%
!! TTCACATACTTTTGGCCTTT+TGG - chr8_3:57968895-57968914 Msa1297560:five_prime_UTR 35.0%
!! TGGCCTTTTGGAAATAGAAA+AGG - chr8_3:57968907-57968926 Msa1297560:five_prime_UTR 35.0%
! GGACCTTTTCTATTTCCAAA+AGG + chr8_3:57968913-57968932 None:intergenic 35.0%
AAAGGTCCAAGTACAGTAAA+AGG - chr8_3:57968925-57968944 Msa1297560:five_prime_UTR 35.0%
AAGGTCCAAGTACAGTAAAA+GGG - chr8_3:57968926-57968945 Msa1297560:five_prime_UTR 35.0%
! CTTTACCCTTTTACTGTACT+TGG + chr8_3:57968934-57968953 None:intergenic 35.0%
AAAAGGGTAAAGCAGTCAAA+TGG - chr8_3:57968942-57968961 Msa1297560:five_prime_UTR 35.0%
! ATGGTGGAAAAGGATATGAG+TGG + chr8_3:57966624-57966643 None:intergenic 40.0%
GAGAGAGAGAAAAGAAATGG+TGG + chr8_3:57966640-57966659 None:intergenic 40.0%
GGAGAGAGAGAGAAAAGAAA+TGG + chr8_3:57966643-57966662 None:intergenic 40.0%
CCAGATAAAGTGAGAGTCAA+AGG + chr8_3:57966889-57966908 None:intergenic 40.0%
CCTTTGACTCTCACTTTATC+TGG - chr8_3:57966886-57966905 Msa1297560:three_prime_UTR 40.0%
! CTACCAACCTTTTGCTTCAA+AGG - chr8_3:57966925-57966944 Msa1297560:exon 40.0%
! GTGAAGATACCATTTGTTGG+AGG + chr8_3:57967182-57967201 None:intergenic 40.0%
GGTTCAAATCTGAGTCTTAG+AGG + chr8_3:57967506-57967525 None:intergenic 40.0%
! ACAGTGAGTTTTGCGAAATC+AGG - chr8_3:57967550-57967569 Msa1297560:intron 40.0%
! CAGTGAGTTTTGCGAAATCA+GGG - chr8_3:57967551-57967570 Msa1297560:intron 40.0%
CTCCAACTGGATACATAAGA+AGG + chr8_3:57967760-57967779 None:intergenic 40.0%
TATTTCATCATACCAGGAGG+TGG + chr8_3:57967827-57967846 None:intergenic 40.0%
TGTATTCACAGGCACAGAAA+TGG - chr8_3:57967947-57967966 Msa1297560:intron 40.0%
! GAAATGGCTCAGTTAGTTTG+TGG - chr8_3:57967963-57967982 Msa1297560:intron 40.0%
ACTTTACTCATGTACATCCG+CGG - chr8_3:57967996-57968015 Msa1297560:intron 40.0%
GTGTATTGTGACAGCAAATC+AGG - chr8_3:57968216-57968235 Msa1297560:intron 40.0%
TATTGTGACAGCAAATCAGG+TGG - chr8_3:57968219-57968238 Msa1297560:intron 40.0%
AACTATACTAACCCCAACTG+AGG + chr8_3:57968332-57968351 None:intergenic 40.0%
CATTACAGACTCTACAACCT+TGG - chr8_3:57968569-57968588 Msa1297560:five_prime_UTR 40.0%
!! GACTCTACAACCTTGGTTTT+TGG - chr8_3:57968576-57968595 Msa1297560:five_prime_UTR 40.0%
!!! GTTATTTTTCCCTTGCGTGA+CGG - chr8_3:57968670-57968689 Msa1297560:five_prime_UTR 40.0%
AAAACCATGCATGAAGCTGG+AGG + chr8_3:57966844-57966863 None:intergenic 45.0%
!!! CCACCCATTTTTTCAACTCC+TGG + chr8_3:57967027-57967046 None:intergenic 45.0%
CCAGGAGTTGAAAAAATGGG+TGG - chr8_3:57967024-57967043 Msa1297560:intron 45.0%
CAGAGTCAACTTGTGTGTTC+TGG - chr8_3:57967725-57967744 Msa1297560:CDS 45.0%
AACAGCACAGCATACAGAAG+TGG + chr8_3:57967783-57967802 None:intergenic 45.0%
TCTGTGCCTGTGAATACATC+AGG + chr8_3:57967945-57967964 None:intergenic 45.0%
!! ATGGCTCAGTTAGTTTGTGG+AGG - chr8_3:57967966-57967985 Msa1297560:intron 45.0%
! TCACACAGTCAATCTAGCTC+TGG - chr8_3:57968046-57968065 Msa1297560:intron 45.0%
!! ACAGTCAATCTAGCTCTGGA+AGG - chr8_3:57968050-57968069 Msa1297560:intron 45.0%
ATGTCAACTGTGGTAACTGC+AGG - chr8_3:57968245-57968264 Msa1297560:intron 45.0%
ATACAATCACCGTCACGCAA+GGG + chr8_3:57968682-57968701 None:intergenic 45.0%
AATACAATCACCGTCACGCA+AGG + chr8_3:57968683-57968702 None:intergenic 45.0%
TCTTCCTCCAGCTTCATGCA+TGG - chr8_3:57966837-57966856 Msa1297560:three_prime_UTR 50.0%
GGATAAGGAGCAAGTGGAAC+TGG + chr8_3:57967119-57967138 None:intergenic 50.0%
GGAGTTGGATAAGGAGCAAG+TGG + chr8_3:57967125-57967144 None:intergenic 50.0%
GTTGTATATGGAGCTGGAGC+AGG + chr8_3:57967158-57967177 None:intergenic 50.0%
!! GGAGGTGTTGTATATGGAGC+TGG + chr8_3:57967164-57967183 None:intergenic 50.0%
CATACAGAAGTGGCTCCAAC+TGG + chr8_3:57967773-57967792 None:intergenic 50.0%
GCTGGAGGTGGAGTTGGATA+AGG + chr8_3:57967134-57967153 None:intergenic 55.0%
ATTGAACACTCGTCGCTCCG+CGG + chr8_3:57968016-57968035 None:intergenic 55.0%
CAGGTGGCACATGTCAACTG+TGG - chr8_3:57968235-57968254 Msa1297560:intron 55.0%
TATGGAGCTGGAGCAGGAGC+TGG + chr8_3:57967152-57967171 None:intergenic 60.0%
GCAGGAGCTGGAGGTGGAGT+TGG + chr8_3:57967140-57967159 None:intergenic 65.0%
GTCACAGCAGTGCCACCTCC+TGG - chr8_3:57967812-57967831 Msa1297560:intron 65.0%
GCAGGCCTCAGCAAGCACGA+CGG - chr8_3:57968497-57968516 Msa1297560:intron 65.0%
! CTGCTCCGTCGTGCTTGCTG+AGG + chr8_3:57968505-57968524 None:intergenic 65.0%
GCTGGAGCAGGAGCTGGAGG+TGG + chr8_3:57967146-57967165 None:intergenic 70.0%
GGAGCTGGAGCAGGAGCTGG+AGG + chr8_3:57967149-57967168 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57966501 57968986 57966501 ID=Msa1297560;Name=Msa1297560
chr8_3 mRNA 57966501 57968986 57966501 ID=Msa1297560-mRNA-1;Parent=Msa1297560;Name=Msa1297560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=531|1|1|1|0.8|0.66|6|441|153
chr8_3 exon 57966501 57966986 57966501 ID=Msa1297560-mRNA-1:exon:16606;Parent=Msa1297560-mRNA-1
chr8_3 exon 57967148 57967257 57967148 ID=Msa1297560-mRNA-1:exon:16605;Parent=Msa1297560-mRNA-1
chr8_3 exon 57967416 57967529 57967416 ID=Msa1297560-mRNA-1:exon:16604;Parent=Msa1297560-mRNA-1
chr8_3 exon 57967654 57967767 57967654 ID=Msa1297560-mRNA-1:exon:16603;Parent=Msa1297560-mRNA-1
chr8_3 exon 57968296 57968459 57968296 ID=Msa1297560-mRNA-1:exon:16602;Parent=Msa1297560-mRNA-1
chr8_3 exon 57968541 57968986 57968541 ID=Msa1297560-mRNA-1:exon:16601;Parent=Msa1297560-mRNA-1
chr8_3 five_prime_UTR 57968541 57968986 57968541 ID=Msa1297560-mRNA-1:five_prime_utr;Parent=Msa1297560-mRNA-1
chr8_3 five_prime_UTR 57968375 57968459 57968375 ID=Msa1297560-mRNA-1:five_prime_utr;Parent=Msa1297560-mRNA-1
chr8_3 CDS 57968296 57968374 57968296 ID=Msa1297560-mRNA-1:cds;Parent=Msa1297560-mRNA-1
chr8_3 CDS 57967654 57967767 57967654 ID=Msa1297560-mRNA-1:cds;Parent=Msa1297560-mRNA-1
chr8_3 CDS 57967416 57967529 57967416 ID=Msa1297560-mRNA-1:cds;Parent=Msa1297560-mRNA-1
chr8_3 CDS 57967148 57967257 57967148 ID=Msa1297560-mRNA-1:cds;Parent=Msa1297560-mRNA-1
chr8_3 CDS 57966942 57966986 57966942 ID=Msa1297560-mRNA-1:cds;Parent=Msa1297560-mRNA-1
chr8_3 three_prime_UTR 57966501 57966941 57966501 ID=Msa1297560-mRNA-1:three_prime_utr;Parent=Msa1297560-mRNA-1
Gene Sequence

>Msa1297560

ATGCCAGTTCCACTTGCTCCTTATCCAACTCCACCTCCAGCTCCTGCTCCAGCTCCATATACAACACCTCCAACAAATGGTGCACAGAGTCAACTTGTGTGTTCTGGTTGTAGAAACCTTCTTATGTATCCAGTTGGAGCCACTTCTGTATGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGATGCCATACTTTACTCATGTACATCCGCGGAGCGACGAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTCTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGTAACTGCAGGATGCTACTTATGTATCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTTACCTCAGTTGGGGCCTCAGCAAGCACGACGGAGCAGCAGAAGTTCAGCACCTCATAA

Protein sequence

>Msa1297560

MPVPLAPYPTPPPAPAPAPYTTPPTNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQQKFSTS*