AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652360 MtrunA17_Chr4g0045941 90.935 353 14 2 1 336 1 352 0.0 655
Msa0652360 MtrunA17_Chr4g0045951 80.000 365 43 3 1 336 1 364 0.0 585
Msa0652360 MtrunA17_Chr2g0283581 68.698 361 87 3 1 336 1 360 2.36e-178 498
Msa0652360 MtrunA17_Chr2g0325481 57.585 323 117 3 31 335 47 367 1.10e-134 387
Msa0652360 MtrunA17_Chr4g0041011 55.452 321 125 2 31 334 44 363 1.46e-126 367
Msa0652360 MtrunA17_Chr3g0097891 49.570 349 156 4 7 335 3 351 2.56e-122 355
Msa0652360 MtrunA17_Chr2g0314801 50.581 344 147 5 10 330 6 349 2.31e-119 348
Msa0652360 MtrunA17_Chr3g0085071 50.000 322 142 3 31 334 43 363 9.50e-116 339
Msa0652360 MtrunA17_Chr3g0085081 48.968 339 151 4 17 334 11 348 1.40e-115 338
Msa0652360 MtrunA17_Chr3g0091031 47.337 338 156 4 15 334 15 348 5.88e-114 334
Msa0652360 MtrunA17_Chr5g0413851 48.105 343 152 5 17 335 20 360 3.76e-111 327
Msa0652360 MtrunA17_Chr3g0105301 46.087 345 153 5 24 335 33 377 4.17e-105 312
Msa0652360 MtrunA17_Chr5g0430371 46.499 357 146 7 24 335 44 400 1.26e-103 310
Msa0652360 MtrunA17_Chr2g0314791 42.659 361 164 9 1 335 3 346 3.88e-95 286
Msa0652360 MtrunA17_Chr1g0171171 38.855 332 169 6 31 334 50 375 9.20e-80 248
Msa0652360 MtrunA17_Chr1g0175671 36.752 351 165 5 34 336 170 511 1.53e-78 249
Msa0652360 MtrunA17_Chr7g0258851 37.892 351 161 5 34 336 248 589 5.99e-78 249
Msa0652360 MtrunA17_Chr4g0068111 37.784 352 172 11 28 336 108 455 6.51e-75 238
Msa0652360 MtrunA17_Chr4g0071391 35.191 341 182 7 34 336 109 448 3.06e-71 228
Msa0652360 MtrunA17_Chr1g0210771 33.429 347 188 8 21 334 46 382 4.18e-71 226
Msa0652360 MtrunA17_Chr1g0213281 34.783 345 183 8 32 335 173 516 2.81e-70 228
Msa0652360 MtrunA17_Chr4g0006991 35.088 342 181 7 34 334 86 427 2.68e-69 222
Msa0652360 MtrunA17_Chr3g0113671 34.393 346 184 7 33 335 105 450 6.09e-67 217
Msa0652360 MtrunA17_Chr5g0413271 33.333 342 179 4 34 335 145 477 2.98e-66 216
Msa0652360 MtrunA17_Chr8g0368461 34.561 353 179 9 34 335 178 529 7.63e-66 216
Msa0652360 MtrunA17_Chr5g0437291 35.043 351 178 10 33 335 164 512 9.07e-65 213
Msa0652360 MtrunA17_Chr4g0005491 33.807 352 188 9 28 334 56 407 3.22e-64 209
Msa0652360 MtrunA17_Chr7g0269991 36.474 329 175 10 34 330 137 463 1.09e-63 209
Msa0652360 MtrunA17_Chr8g0360521 34.808 339 183 8 34 334 71 409 2.54e-63 206
Msa0652360 MtrunA17_Chr7g0243301 32.817 387 202 11 6 334 23 409 4.54e-63 206
Msa0652360 MtrunA17_Chr3g0114101 33.236 343 188 8 34 335 89 431 2.96e-62 204
Msa0652360 MtrunA17_Chr7g0242701 33.913 345 187 7 31 334 83 427 2.55e-59 196
Msa0652360 MtrunA17_Chr1g0209921 41.732 254 127 8 7 239 14 267 2.68e-59 191
Msa0652360 MtrunA17_Chr7g0259711 34.473 351 185 11 28 335 85 433 6.41e-59 196
Msa0652360 MtrunA17_Chr5g0437601 33.048 351 194 10 26 335 75 425 2.53e-58 194
Msa0652360 MtrunA17_Chr3g0126021 35.015 337 179 7 34 335 129 460 3.40e-58 194
Msa0652360 MtrunA17_Chr4g0005481 33.236 343 189 10 27 330 101 442 4.28e-58 194
Msa0652360 MtrunA17_Chr2g0287901 33.333 348 190 10 29 335 92 438 6.40e-58 193
Msa0652360 MtrunA17_Chr8g0384151 32.239 335 187 8 34 335 90 417 9.07e-54 182
Msa0652360 MtrunA17_Chr1g0178081 32.362 343 181 10 13 335 31 342 3.15e-45 157
Msa0652360 MtrunA17_Chr5g0414061 28.736 348 198 11 27 327 87 431 1.70e-35 134
Msa0652360 MtrunA17_Chr3g0085101 55.660 106 46 1 201 305 1 106 3.66e-34 121
Msa0652360 MtrunA17_Chr6g0456681 29.155 367 200 11 16 330 46 404 1.72e-31 122
Msa0652360 MtrunA17_Chr6g0476041 28.084 381 179 14 21 330 154 510 2.17e-31 123
Msa0652360 MtrunA17_Chr8g0384421 28.736 348 201 12 30 334 129 472 4.01e-31 122
Msa0652360 MtrunA17_Chr5g0414091 30.145 345 187 13 33 327 84 424 4.82e-31 121
Msa0652360 MtrunA17_Chr6g0456691 28.977 352 195 11 33 336 77 421 1.27e-30 120
Msa0652360 MtrunA17_Chr4g0070341 29.558 362 196 16 25 334 117 471 1.88e-30 120
Msa0652360 MtrunA17_Chr5g0414051 28.142 366 170 15 34 330 75 416 1.25e-29 117
Msa0652360 MtrunA17_Chr8g0347321 28.451 355 192 13 34 335 95 440 4.58e-29 116
Msa0652360 MtrunA17_Chr4g0049421 27.066 351 202 12 34 335 48 393 5.35e-29 115
Msa0652360 MtrunA17_Chr1g0188191 26.575 365 185 12 31 330 231 577 1.91e-28 115
Msa0652360 MtrunA17_Chr3g0140371 27.143 350 195 14 32 330 16 356 6.08e-28 112
Msa0652360 MtrunA17_Chr5g0414041 26.301 346 203 11 34 330 87 429 5.37e-27 110
Msa0652360 MtrunA17_Chr2g0283851 27.095 358 207 14 23 330 43 396 9.65e-27 109
Msa0652360 MtrunA17_Chr8g0391481 27.322 366 202 14 22 330 10 368 1.67e-26 108
Msa0652360 MtrunA17_Chr7g0226991 26.801 347 199 11 34 330 57 398 7.70e-26 106
Msa0652360 MtrunA17_Chr6g0451321 26.611 357 207 14 25 334 109 457 1.22e-24 103
Msa0652360 MtrunA17_Chr8g0387921 26.554 354 207 11 31 335 71 420 1.23e-24 103
Msa0652360 MtrunA17_Chr1g0209931 51.685 89 39 2 248 335 8 93 1.29e-22 90.9
Msa0652360 MtrunA17_Chr7g0221271 34.646 127 83 0 34 160 79 205 2.63e-21 90.5
Msa0652360 MtrunA17_Chr6g0455901 26.062 353 202 12 30 330 67 412 2.15e-20 91.3
Msa0652360 MtrunA17_Chr5g0429211 43.519 108 54 2 61 162 162 268 5.55e-20 88.2
Msa0652360 MtrunA17_Chr7g0221291 39.130 92 56 0 31 122 76 167 4.94e-19 83.2
Msa0652360 MtrunA17_Chr2g0287911 46.774 62 26 1 28 89 55 109 5.78e-13 64.7
Msa0652360 MtrunA17_Chr2g0287931 36.486 74 40 1 94 160 2 75 9.21e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652360 AT1G29050.1 61.862 333 108 3 22 336 49 380 1.45e-157 446
Msa0652360 AT2G34070.1 61.562 333 107 4 23 336 55 385 2.14e-152 433
Msa0652360 AT2G31110.2 51.667 360 141 4 8 334 3 362 5.56e-134 386
Msa0652360 AT2G42570.1 55.215 326 129 1 27 335 40 365 3.81e-133 384
Msa0652360 AT3G14850.2 51.084 323 136 4 29 330 29 350 8.81e-115 337
Msa0652360 AT2G30900.1 49.383 324 142 5 34 335 43 366 2.67e-109 323
Msa0652360 AT2G34070.2 61.905 252 76 3 104 336 1 251 5.35e-109 318
Msa0652360 AT1G78710.1 45.260 327 157 5 29 335 33 357 4.21e-107 317
Msa0652360 AT5G58600.1 46.746 338 146 6 32 335 64 401 2.25e-100 301
Msa0652360 AT2G30010.1 43.137 357 158 7 24 335 41 397 9.22e-93 282
Msa0652360 AT2G30010.2 43.137 357 158 7 24 335 84 440 2.05e-92 283
Msa0652360 AT2G31110.3 50.193 259 96 5 8 233 3 261 1.02e-85 259
Msa0652360 AT3G14850.1 51.613 248 98 4 104 330 1 247 3.24e-83 253
Msa0652360 AT1G78710.2 40.645 310 143 7 29 335 26 297 3.77e-79 244
Msa0652360 AT2G31110.1 53.623 207 79 1 145 334 8 214 1.24e-78 239
Msa0652360 AT5G06700.1 38.663 344 170 8 33 336 254 596 1.57e-77 249
Msa0652360 AT3G54260.1 37.500 336 165 9 34 335 51 375 4.39e-75 236
Msa0652360 AT3G12060.1 38.081 344 172 8 33 336 195 537 1.30e-74 240
Msa0652360 AT5G01360.2 35.942 345 179 7 32 334 34 378 3.04e-73 231
Msa0652360 AT5G01360.1 35.942 345 179 7 32 334 90 434 1.37e-72 231
Msa0652360 AT2G30900.2 49.115 226 96 3 34 240 43 268 3.49e-72 225
Msa0652360 AT5G49340.1 33.065 372 206 8 7 336 73 443 8.82e-71 227
Msa0652360 AT5G20590.1 34.746 354 191 8 22 336 129 481 5.53e-70 226
Msa0652360 AT5G58600.2 46.930 228 102 3 32 240 64 291 1.10e-67 214
Msa0652360 AT3G62390.1 36.550 342 180 11 29 335 133 472 2.56e-65 214
Msa0652360 AT1G60790.1 33.051 354 177 7 33 335 189 533 2.94e-64 213
Msa0652360 AT3G11030.1 34.278 353 188 9 26 335 98 449 1.47e-63 208
Msa0652360 AT1G73140.1 34.203 345 189 8 29 335 62 406 1.78e-63 207
Msa0652360 AT3G55990.1 34.203 345 184 8 34 335 140 484 2.02e-63 209
Msa0652360 AT2G40150.1 32.861 353 188 8 32 335 69 421 2.02e-63 207
Msa0652360 AT1G48880.1 34.132 334 170 8 34 330 115 435 5.83e-63 207
Msa0652360 AT5G06230.2 32.378 349 191 9 31 335 18 365 1.53e-60 198
Msa0652360 AT5G19160.1 34.174 357 180 13 29 335 94 445 2.33e-60 200
Msa0652360 AT5G06230.1 32.378 349 191 9 31 335 59 406 2.63e-60 199
Msa0652360 AT2G40160.1 32.951 349 186 10 34 335 77 424 3.70e-60 199
Msa0652360 AT3G06080.2 32.857 350 191 9 29 335 98 446 5.24e-60 199
Msa0652360 AT2G40160.2 32.951 349 186 10 34 335 77 424 5.80e-60 199
Msa0652360 AT2G38320.1 32.124 386 210 11 2 335 20 405 1.37e-59 197
Msa0652360 AT5G01620.2 31.805 349 194 10 24 330 99 445 3.29e-59 197
Msa0652360 AT5G01620.1 31.805 349 194 10 24 330 99 445 3.29e-59 197
Msa0652360 AT5G01620.3 31.805 349 194 10 24 330 107 453 4.93e-59 197
Msa0652360 AT2G40320.1 34.091 352 189 10 26 335 73 423 5.09e-59 196
Msa0652360 AT3G11570.1 33.025 324 178 8 50 335 98 420 1.07e-56 190
Msa0652360 AT2G38320.2 31.661 319 174 9 61 335 4 322 9.39e-49 166
Msa0652360 AT5G19160.2 32.780 241 131 7 29 238 94 334 1.05e-40 146
Msa0652360 AT5G20590.2 32.258 248 137 6 22 238 129 376 2.98e-40 145
Msa0652360 AT3G62390.2 33.891 239 129 8 29 238 133 371 4.08e-39 143
Msa0652360 AT2G40160.3 31.197 234 132 5 34 238 77 310 8.23e-39 140
Msa0652360 AT3G06080.1 31.535 241 134 6 29 238 98 338 5.42e-37 136
Msa0652360 AT5G06230.3 29.555 247 137 6 31 240 59 305 2.35e-34 128
Msa0652360 AT4G25360.1 29.526 359 190 14 28 330 169 520 4.17e-33 129
Msa0652360 AT4G25360.2 29.526 359 190 14 28 330 169 520 4.17e-33 129
Msa0652360 AT5G64020.1 28.291 357 195 12 34 334 57 408 1.43e-32 125
Msa0652360 AT1G70230.1 27.893 337 195 12 34 330 79 407 2.04e-32 125
Msa0652360 AT2G37720.1 27.966 354 188 12 34 334 143 482 2.63e-32 125
Msa0652360 AT5G51640.1 28.495 372 202 13 16 330 120 484 9.65e-32 124
Msa0652360 AT1G01430.1 27.298 359 211 10 26 335 91 448 1.03e-31 124
Msa0652360 AT5G64470.2 29.178 353 194 15 34 336 55 401 3.74e-31 121
Msa0652360 AT5G64470.3 28.035 346 201 13 34 336 55 395 1.57e-30 120
Msa0652360 AT5G15900.1 26.593 361 223 8 16 334 49 409 3.68e-28 114
Msa0652360 AT5G15900.2 26.593 361 223 8 16 334 68 428 4.26e-28 114
Msa0652360 AT3G02440.2 25.294 340 209 8 34 330 135 472 4.38e-27 111
Msa0652360 AT5G15890.1 26.648 349 216 9 21 330 171 518 4.59e-27 111
Msa0652360 AT3G02440.1 25.294 340 209 8 34 330 127 464 4.68e-27 111
Msa0652360 AT4G01080.1 28.035 346 196 12 31 330 88 426 2.39e-26 108
Msa0652360 AT2G14530.1 26.685 356 201 12 31 334 59 406 2.83e-24 102
Msa0652360 AT3G28150.1 25.570 395 205 12 10 334 35 410 6.63e-24 101
Msa0652360 AT4G11090.1 27.299 348 191 12 34 327 79 418 2.59e-23 100
Msa0652360 AT4G23790.1 26.571 350 209 10 34 335 79 428 1.91e-22 97.8
Msa0652360 AT5G20680.6 37.778 90 55 1 34 122 118 207 3.58e-15 76.6
Msa0652360 AT5G20680.4 37.778 90 55 1 34 122 212 301 3.64e-15 76.6
Msa0652360 AT5G20680.1 37.778 90 55 1 34 122 212 301 3.64e-15 76.6
Msa0652360 AT5G20680.3 37.778 90 55 1 34 122 212 301 3.64e-15 76.6
Msa0652360 AT5G20680.5 37.778 90 55 1 34 122 212 301 3.64e-15 76.6
Msa0652360 AT5G20680.2 37.778 90 55 1 34 122 194 283 3.65e-15 76.6
Msa0652360 AT5G64470.4 25.301 249 147 8 34 246 55 300 9.15e-15 74.3
Msa0652360 AT5G64470.1 25.301 249 147 8 34 246 55 300 1.43e-14 73.9

Find 86 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTGTAATTTGTTCTT+TGG 0.220399 4_3:+60078433 Msa0652360:CDS
ACTATACCGTACACCATATT+TGG 0.252473 4_3:+60080655 Msa0652360:CDS
TGAATTATATCCACCAAATA+TGG 0.255317 4_3:-60080668 None:intergenic
AAAGCCATATGGCCCTATTT+TGG 0.262090 4_3:-60078325 None:intergenic
AATTTAATTACTATATATAT+TGG 0.269310 4_3:+60081671 Msa0652360:three_prime_UTR
TATTTAAGATACTGATTATC+AGG 0.276183 4_3:-60078547 None:intergenic
ACATGATTAGAGCTGCATTT+AGG 0.303593 4_3:-60081570 None:intergenic
ATTGACCACTTGGGCTGGTT+GGG 0.323556 4_3:+60081121 Msa0652360:CDS
AGGAGTATGTTCCAAGTATC+AGG 0.327240 4_3:-60081550 None:intergenic
TTGTTCACTACATCATTTGC+AGG 0.336870 4_3:-60081388 None:intergenic
TTGCTGGGTGCATGGATATA+AGG 0.344551 4_3:-60078396 None:intergenic
AAAACTAAACTCTTCTTTCA+AGG 0.357639 4_3:+60081167 Msa0652360:CDS
GCATGGATATAAGGAGATTT+AGG 0.362396 4_3:-60078387 None:intergenic
CGGGGAAGTTGAACCATTAC+CGG 0.374830 4_3:+60081339 Msa0652360:CDS
AGATTGCATGCACAGGACTA+TGG 0.376697 4_3:+60080620 Msa0652360:intron
GAAAAGCTTGTAGTGACATT+AGG 0.381141 4_3:-60078970 None:intergenic
ATCAGTATCTTAAATACTCT+TGG 0.387106 4_3:+60078554 Msa0652360:CDS
AATGTCTACTGTCTTCTTCC+AGG 0.394880 4_3:+60079005 Msa0652360:CDS
CTGGGTAAAGCACATGAATC+AGG 0.414998 4_3:-60078580 None:intergenic
TGTGAAATTAGAGTATATAT+TGG 0.416927 4_3:+60081590 Msa0652360:exon
AGTGAAGGACATGGACCGTT+TGG 0.425551 4_3:+60081082 Msa0652360:CDS
TCCCCGCTACATGTCTTCTT+CGG 0.430209 4_3:-60081322 None:intergenic
GATTGACCACTTGGGCTGGT+TGG 0.439990 4_3:+60081120 Msa0652360:CDS
GATAAGAAGATAATGTTTGT+AGG 0.445963 4_3:+60078889 Msa0652360:CDS
GGGGCAGGATATGTGGTTCC+CGG 0.448211 4_3:-60081358 None:intergenic
GGATATGTGGTTCCCGGTAA+TGG 0.448546 4_3:-60081352 None:intergenic
TTGAATCCAGAGGGCAGGAT+TGG 0.450495 4_3:+60081293 Msa0652360:intron
TTACTTACTTATTATGAGTA+GGG 0.455719 4_3:-60081196 None:intergenic
GTAATTTGTTCTTTGGAAGC+TGG 0.456024 4_3:+60078440 Msa0652360:CDS
TTTATAAGGGATTGACCACT+TGG 0.465985 4_3:+60081111 Msa0652360:CDS
ACATCATTTGCAGGAGGTAG+AGG 0.472593 4_3:-60081379 None:intergenic
TGTAGTCATTGGTGCCTACC+AGG 0.474740 4_3:+60081523 Msa0652360:CDS
TTGTGCCCTTGCTGGGTGCA+TGG 0.478358 4_3:-60078404 None:intergenic
TACCAGGACTACCTGATACT+TGG 0.478567 4_3:+60081539 Msa0652360:CDS
AATCTGATATATGTTCTAGT+TGG 0.481404 4_3:-60078274 None:intergenic
TAATTTGTTCTTTGGAAGCT+GGG 0.484946 4_3:+60078441 Msa0652360:CDS
TGGTGTACGGTATAGTTGTA+TGG 0.491607 4_3:-60080648 None:intergenic
GGATCCTTAGTATAGATAGA+AGG 0.493596 4_3:-60081487 None:intergenic
ACCACCAAAATAGGGCCATA+TGG 0.494884 4_3:+60078321 Msa0652360:exon
AAGGGATTGACCACTTGGGC+TGG 0.495484 4_3:+60081116 Msa0652360:CDS
GTGGTGTAGGTTCAGTGGAG+AGG 0.499875 4_3:+60078846 Msa0652360:intron
GATATAATTCAAGAAGATGT+TGG 0.503344 4_3:+60080680 Msa0652360:CDS
GTTAAAGAACATGAAGAAGC+AGG 0.504244 4_3:+60081414 Msa0652360:CDS
ATCTATACTAAGGATCCAAC+TGG 0.504484 4_3:+60081493 Msa0652360:CDS
CTGGCATTGATTGTAGTCAT+TGG 0.505796 4_3:+60081512 Msa0652360:CDS
TGTGATTTGAAGTCCACATA+TGG 0.507294 4_3:+60078216 Msa0652360:five_prime_UTR
GTCTTGTATGATTCATGCGT+CGG 0.512224 4_3:+60078945 Msa0652360:CDS
TCTCCTTGAATCCAGAGGGC+AGG 0.517922 4_3:+60081288 Msa0652360:intron
TTTGCAGGAGGTAGAGGGGC+AGG 0.519222 4_3:-60081373 None:intergenic
ACATCCTTCTATCTATACTA+AGG 0.519367 4_3:+60081483 Msa0652360:CDS
AGGTAGAGGGGCAGGATATG+TGG 0.520452 4_3:-60081365 None:intergenic
GTTACTTACTTATTATGAGT+AGG 0.522689 4_3:-60081197 None:intergenic
TATGGACATTGAAAGCCATA+TGG 0.533571 4_3:-60078336 None:intergenic
TTCCAAGTATCAGGTAGTCC+TGG 0.535659 4_3:-60081541 None:intergenic
CTATAAAAGCTGGTAAAGCA+TGG 0.539195 4_3:+60080723 Msa0652360:CDS
CATCATTTGCAGGAGGTAGA+GGG 0.540823 4_3:-60081378 None:intergenic
AACCGAAGAAGACATGTAGC+GGG 0.541404 4_3:+60081320 Msa0652360:CDS
ATCAAACTGAGCTTCAACGA+AGG 0.553255 4_3:-60078506 None:intergenic
TGACTACAATCAATGCCAGT+TGG 0.558982 4_3:-60081508 None:intergenic
ATACCGTACACCATATTTGG+TGG 0.560969 4_3:+60080658 Msa0652360:CDS
TACTTACTTATTATGAGTAG+GGG 0.562023 4_3:-60081195 None:intergenic
CCTTATAAAATGCATCCAAA+CGG 0.562648 4_3:-60081097 None:intergenic
CTGATTCATGTGCTTTACCC+AGG 0.569924 4_3:+60078581 Msa0652360:CDS
ACGCTGGACTCTATAAAAGC+TGG 0.571735 4_3:+60080713 Msa0652360:CDS
ATTCATTGAGTCTAAACATG+TGG 0.578501 4_3:+60078914 Msa0652360:CDS
TATAAAAGCTGGTAAAGCAT+GGG 0.581903 4_3:+60080724 Msa0652360:CDS
TATCCACCAAATATGGTGTA+CGG 0.590876 4_3:-60080661 None:intergenic
GGGGAAGTTGAACCATTACC+GGG 0.597940 4_3:+60081340 Msa0652360:CDS
TTATATCCATGCACCCAGCA+AGG 0.602227 4_3:+60078398 Msa0652360:CDS
TATATCCATGCACCCAGCAA+GGG 0.606783 4_3:+60078399 Msa0652360:CDS
TTCATTGAGTCTAAACATGT+GGG 0.609808 4_3:+60078915 Msa0652360:CDS
TCAAACTGAGCTTCAACGAA+GGG 0.618613 4_3:-60078505 None:intergenic
ATCATTTGCAGGAGGTAGAG+GGG 0.621851 4_3:-60081377 None:intergenic
ATCAACCCAACCAGCCCAAG+TGG 0.622283 4_3:-60081126 None:intergenic
CTTCAAATCACATCGAGTGT+AGG 0.624560 4_3:-60078205 None:intergenic
AGATGGTTCTAATCTAGTGA+AGG 0.625910 4_3:+60081067 Msa0652360:CDS
AAGTATCAGGTAGTCCTGGT+AGG 0.628734 4_3:-60081537 None:intergenic
TGGTAAAGCATGGGTAGACA+TGG 0.629944 4_3:+60080733 Msa0652360:CDS
TTCACTACATCATTTGCAGG+AGG 0.631894 4_3:-60081385 None:intergenic
TGTTGGTAGAGTGCTTACGC+TGG 0.633724 4_3:+60080697 Msa0652360:CDS
TTATAAGGGATTGACCACTT+GGG 0.640369 4_3:+60081112 Msa0652360:CDS
GAACCGAAGAAGACATGTAG+CGG 0.645973 4_3:+60081319 Msa0652360:CDS
TTCTAATCTAGTGAAGGACA+TGG 0.651897 4_3:+60081073 Msa0652360:CDS
CAGCTTGAAGAATCATAGAG+AGG 0.652645 4_3:-60078481 None:intergenic
TGGAAGAAGACAGTAGACAT+TGG 0.660692 4_3:-60079003 None:intergenic
ACCGAAGAAGACATGTAGCG+GGG 0.713042 4_3:+60081321 Msa0652360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATTTTAATTATATAT+AGG - chr4_3:60079502-60079521 None:intergenic 0.0%
!!! ATTATATTTTAATTATATAT+AGG - chr4_3:60079502-60079521 None:intergenic 0.0%
!!! TATTTTAATTATATATAGGT+CGG - chr4_3:60079498-60079517 None:intergenic 10.0%
!! TATATAATAATATTAAAGTG+AGG + chr4_3:60079526-60079545 Msa0652360:intron 10.0%
!!! TATTTTAATTATATATAGGT+CGG - chr4_3:60079498-60079517 None:intergenic 10.0%
!! TATATAATAATATTAAAGTG+AGG + chr4_3:60079526-60079545 Msa0652360:intron 10.0%
!! AAAAAAAAAATCAAATATGA+AGG - chr4_3:60080348-60080367 None:intergenic 10.0%
!!! ATAAAGTAAAGATTTAATTT+GGG - chr4_3:60080411-60080430 None:intergenic 10.0%
!! AATAAAGTAAAGATTTAATT+TGG - chr4_3:60080412-60080431 None:intergenic 10.0%
!!! AATAATTGTAATTTGTTCTT+TGG + chr4_3:60078433-60078452 Msa0652360:CDS 15.0%
!! TATATGTGACAATTAATATT+TGG + chr4_3:60078755-60078774 Msa0652360:intron 15.0%
!!! AGACTTATTTTTTTTAAGTT+TGG - chr4_3:60079808-60079827 None:intergenic 15.0%
!! AAAATTTGTATTGTCATTAT+AGG + chr4_3:60080151-60080170 Msa0652360:intron 15.0%
!! AAATTTGTATTGTCATTATA+GGG + chr4_3:60080152-60080171 Msa0652360:intron 15.0%
!! CATTAATTCATTATAATAGA+TGG + chr4_3:60080286-60080305 Msa0652360:intron 15.0%
!!! ATCATTGATTTTTTTTTTGA+AGG - chr4_3:60080526-60080545 None:intergenic 15.0%
!!! TATTTAAGATACTGATTATC+AGG - chr4_3:60078550-60078569 None:intergenic 20.0%
!!! GTAATGAGTAATTATTTTTG+TGG + chr4_3:60078827-60078846 Msa0652360:intron 20.0%
!!! AATATTTCTATGGAAAATGA+TGG - chr4_3:60079307-60079326 None:intergenic 20.0%
!! AATTAACTCGTTGAATAAAA+TGG + chr4_3:60079390-60079409 Msa0652360:intron 20.0%
!! AATATCTAGATTTAGTGATA+AGG - chr4_3:60079694-60079713 None:intergenic 20.0%
!!! TTTTAAAGAAGCTAATAGAT+TGG + chr4_3:60079759-60079778 Msa0652360:intron 20.0%
!!! ATTGGACCATAATTTTAAAA+AGG + chr4_3:60079777-60079796 Msa0652360:intron 20.0%
!! AATTTGTATTGTCATTATAG+GGG + chr4_3:60080153-60080172 Msa0652360:intron 20.0%
!! GATAAAAAAATATGTTGCAA+GGG - chr4_3:60080231-60080250 None:intergenic 20.0%
!! AGATAAAAAAATATGTTGCA+AGG - chr4_3:60080232-60080251 None:intergenic 20.0%
!!! TACTTTATTTCTATCCATAT+AGG + chr4_3:60080423-60080442 Msa0652360:intron 20.0%
!!! ACTTTATTTCTATCCATATA+GGG + chr4_3:60080424-60080443 Msa0652360:intron 20.0%
!! ACCATTGATATTATCATATT+GGG - chr4_3:60080494-60080513 None:intergenic 20.0%
!! TACCATTGATATTATCATAT+TGG - chr4_3:60080495-60080514 None:intergenic 20.0%
!! TTCAAATATACATTCAATTG+TGG - chr4_3:60080854-60080873 None:intergenic 20.0%
!! TTGAATGTATATTTGAATTG+AGG + chr4_3:60080857-60080876 Msa0652360:intron 20.0%
!! TTACTTACTTATTATGAGTA+GGG - chr4_3:60081199-60081218 None:intergenic 20.0%
!! TGTGAAATTAGAGTATATAT+TGG + chr4_3:60081590-60081609 Msa0652360:exon 20.0%
! AATCTGATATATGTTCTAGT+TGG - chr4_3:60078277-60078296 None:intergenic 25.0%
!! ATATTCTCTTTCACAGTTTT+TGG + chr4_3:60078298-60078317 Msa0652360:five_prime_UTR 25.0%
! AGAGCAAAAACAATAATGTA+TGG - chr4_3:60078357-60078376 None:intergenic 25.0%
! CAGTTTGATTGCAAAAAATA+TGG + chr4_3:60078520-60078539 Msa0652360:CDS 25.0%
! ATCAGTATCTTAAATACTCT+TGG + chr4_3:60078554-60078573 Msa0652360:CDS 25.0%
! TATATGTGACATATCACAAA+GGG - chr4_3:60078645-60078664 None:intergenic 25.0%
! TTATATGTGACATATCACAA+AGG - chr4_3:60078646-60078665 None:intergenic 25.0%
!!! ATAAACGTGTTTTGTTTCTA+TGG - chr4_3:60078726-60078745 None:intergenic 25.0%
! TTACATTCGTACTATACATT+AGG - chr4_3:60078811-60078830 None:intergenic 25.0%
!!! AGTAATTATTTTTGTGGTGT+AGG + chr4_3:60078833-60078852 Msa0652360:intron 25.0%
! GATAAGAAGATAATGTTTGT+AGG + chr4_3:60078889-60078908 Msa0652360:CDS 25.0%
!!! TCATTTTGTTTGTTTCTTTG+CGG + chr4_3:60079101-60079120 Msa0652360:intron 25.0%
! AATTTCGAGCTTAATATCTT+TGG - chr4_3:60079261-60079280 None:intergenic 25.0%
!! GTCTCATTCAAATATTTCTA+TGG - chr4_3:60079317-60079336 None:intergenic 25.0%
! AGAAATATTTGAATGAGACT+AGG + chr4_3:60079318-60079337 Msa0652360:intron 25.0%
!!! TGTGTAAAGACTTTTGAAAA+AGG - chr4_3:60079731-60079750 None:intergenic 25.0%
!!! GCTTGACCTTTTTAAAATTA+TGG - chr4_3:60079786-60079805 None:intergenic 25.0%
! TAACCTATTTAAACAAAGTC+TGG + chr4_3:60079882-60079901 Msa0652360:intron 25.0%
!! TTTAGAGTTGTCTTTACATA+AGG - chr4_3:60080054-60080073 None:intergenic 25.0%
!!! ATATTTTTATCCACCCTATA+TGG - chr4_3:60080440-60080459 None:intergenic 25.0%
! GATAAAAATATCCATATTCG+TGG + chr4_3:60080449-60080468 Msa0652360:intron 25.0%
! CCATTGATATTATCATATTG+GGG - chr4_3:60080493-60080512 None:intergenic 25.0%
! CACTAACACAGTTTAATTAT+GGG - chr4_3:60080590-60080609 None:intergenic 25.0%
! TCACTAACACAGTTTAATTA+TGG - chr4_3:60080591-60080610 None:intergenic 25.0%
! TGAATTATATCCACCAAATA+TGG - chr4_3:60080671-60080690 None:intergenic 25.0%
! GATATAATTCAAGAAGATGT+TGG + chr4_3:60080680-60080699 Msa0652360:CDS 25.0%
!! AAAGTGATGAATGTGTTATT+TGG + chr4_3:60081015-60081034 Msa0652360:intron 25.0%
!!! AGAAGAGTTTAGTTTTAGTA+GGG - chr4_3:60081163-60081182 None:intergenic 25.0%
!!! AAGAAGAGTTTAGTTTTAGT+AGG - chr4_3:60081164-60081183 None:intergenic 25.0%
! AAAACTAAACTCTTCTTTCA+AGG + chr4_3:60081167-60081186 Msa0652360:CDS 25.0%
! TACTTACTTATTATGAGTAG+GGG - chr4_3:60081198-60081217 None:intergenic 25.0%
! GTTACTTACTTATTATGAGT+AGG - chr4_3:60081200-60081219 None:intergenic 25.0%
!! CTCTAATTAAAAGTACGTAT+TGG - chr4_3:60081246-60081265 None:intergenic 25.0%
!! TTTTCGTAAATGTTCTTAAG+AGG + chr4_3:60081702-60081721 Msa0652360:three_prime_UTR 25.0%
!! TAATTTGTTCTTTGGAAGCT+GGG + chr4_3:60078441-60078460 Msa0652360:CDS 30.0%
TACAAACTAACAGTATACCT+GGG - chr4_3:60078601-60078620 None:intergenic 30.0%
ATACAAACTAACAGTATACC+TGG - chr4_3:60078602-60078621 None:intergenic 30.0%
ATTCATTGAGTCTAAACATG+TGG + chr4_3:60078914-60078933 Msa0652360:CDS 30.0%
TTCATTGAGTCTAAACATGT+GGG + chr4_3:60078915-60078934 Msa0652360:CDS 30.0%
AAACAAGAACAACTATTACC+TGG - chr4_3:60079026-60079045 None:intergenic 30.0%
!! CATTTTGTTTGTTTCTTTGC+GGG + chr4_3:60079102-60079121 Msa0652360:intron 30.0%
! CCTATCATTTTACATGTAAC+AGG - chr4_3:60079209-60079228 None:intergenic 30.0%
CCTGTTACATGTAAAATGAT+AGG + chr4_3:60079206-60079225 Msa0652360:intron 30.0%
GATATTAAGCTCGAAATTGA+AGG + chr4_3:60079263-60079282 Msa0652360:intron 30.0%
TATTTGAATGAGACTAGGTT+AGG + chr4_3:60079323-60079342 Msa0652360:intron 30.0%
! ATCAGCTATAAACTTTTGTC+GGG - chr4_3:60079352-60079371 None:intergenic 30.0%
! GATCAGCTATAAACTTTTGT+CGG - chr4_3:60079353-60079372 None:intergenic 30.0%
! AGTCCAGACTTTGTTTAAAT+AGG - chr4_3:60079888-60079907 None:intergenic 30.0%
TTGTAAACTGTTGCAATCAT+AGG - chr4_3:60079946-60079965 None:intergenic 30.0%
!! TTATTTCTATCCATATAGGG+TGG + chr4_3:60080427-60080446 Msa0652360:intron 30.0%
CCCCAATATGATAATATCAA+TGG + chr4_3:60080490-60080509 Msa0652360:intron 30.0%
TAACACAGTTTAATTATGGG+TGG - chr4_3:60080587-60080606 None:intergenic 30.0%
TAAACTGTGTTAGTGATACT+TGG + chr4_3:60080595-60080614 Msa0652360:intron 30.0%
TATAAAAGCTGGTAAAGCAT+GGG + chr4_3:60080724-60080743 Msa0652360:CDS 30.0%
ATTTGAATTGAGGTGATTTG+AGG + chr4_3:60080867-60080886 Msa0652360:intron 30.0%
CCTTATAAAATGCATCCAAA+CGG - chr4_3:60081100-60081119 None:intergenic 30.0%
! CGTTTGGATGCATTTTATAA+GGG + chr4_3:60081098-60081117 Msa0652360:CDS 30.0%
ACATCCTTCTATCTATACTA+AGG + chr4_3:60081483-60081502 Msa0652360:CDS 30.0%
! TGTGATTTGAAGTCCACATA+TGG + chr4_3:60078216-60078235 Msa0652360:five_prime_UTR 35.0%
AGAAAAACTAGTGCCATATG+TGG - chr4_3:60078232-60078251 None:intergenic 35.0%
!! AGTTTTTGGACCACCAAAAT+AGG + chr4_3:60078312-60078331 Msa0652360:five_prime_UTR 35.0%
!! GTTTTTGGACCACCAAAATA+GGG + chr4_3:60078313-60078332 Msa0652360:five_prime_UTR 35.0%
TATGGACATTGAAAGCCATA+TGG - chr4_3:60078339-60078358 None:intergenic 35.0%
GCATGGATATAAGGAGATTT+AGG - chr4_3:60078390-60078409 None:intergenic 35.0%
!! GTAATTTGTTCTTTGGAAGC+TGG + chr4_3:60078440-60078459 Msa0652360:CDS 35.0%
!!! GTGGAGAGGATTTTTTGAAT+AGG + chr4_3:60078860-60078879 Msa0652360:CDS 35.0%
!!! GAGAGGATTTTTTGAATAGG+TGG + chr4_3:60078863-60078882 Msa0652360:CDS 35.0%
!!! GGATTTTTTGAATAGGTGGA+AGG + chr4_3:60078867-60078886 Msa0652360:CDS 35.0%
GAAAAGCTTGTAGTGACATT+AGG - chr4_3:60078973-60078992 None:intergenic 35.0%
! ATGTCACTACAAGCTTTTCT+AGG + chr4_3:60078974-60078993 Msa0652360:CDS 35.0%
TAGCTGATCTACATAAAGTC+TGG + chr4_3:60079364-60079383 Msa0652360:intron 35.0%
! TCGGTTTGACATGCATAATA+TGG - chr4_3:60079479-60079498 None:intergenic 35.0%
!! GACTTTTGAAAAAGGCTAAC+AGG - chr4_3:60079723-60079742 None:intergenic 35.0%
GATTGCAACAGTTTACAAGT+TGG + chr4_3:60079948-60079967 Msa0652360:intron 35.0%
TGTGTCATCAACATCAATCA+TGG + chr4_3:60080004-60080023 Msa0652360:intron 35.0%
GTGTCATCAACATCAATCAT+GGG + chr4_3:60080005-60080024 Msa0652360:intron 35.0%
TATCCATATTCGTGGATATC+CGG + chr4_3:60080457-60080476 Msa0652360:intron 35.0%
TATCATATTGGGGATAGCAA+TGG - chr4_3:60080483-60080502 None:intergenic 35.0%
ACTATACCGTACACCATATT+TGG + chr4_3:60080655-60080674 Msa0652360:CDS 35.0%
TATCCACCAAATATGGTGTA+CGG - chr4_3:60080664-60080683 None:intergenic 35.0%
CTATAAAAGCTGGTAAAGCA+TGG + chr4_3:60080723-60080742 Msa0652360:CDS 35.0%
!! TTATTTGGCTTGCTTCATTC+AGG + chr4_3:60081030-60081049 Msa0652360:intron 35.0%
!! AGATGGTTCTAATCTAGTGA+AGG + chr4_3:60081067-60081086 Msa0652360:CDS 35.0%
TTCTAATCTAGTGAAGGACA+TGG + chr4_3:60081073-60081092 Msa0652360:CDS 35.0%
! CCGTTTGGATGCATTTTATA+AGG + chr4_3:60081097-60081116 Msa0652360:CDS 35.0%
TTTATAAGGGATTGACCACT+TGG + chr4_3:60081111-60081130 Msa0652360:CDS 35.0%
TTATAAGGGATTGACCACTT+GGG + chr4_3:60081112-60081131 Msa0652360:CDS 35.0%
TTGTTCACTACATCATTTGC+AGG - chr4_3:60081391-60081410 None:intergenic 35.0%
GTTAAAGAACATGAAGAAGC+AGG + chr4_3:60081414-60081433 Msa0652360:CDS 35.0%
GGATCCTTAGTATAGATAGA+AGG - chr4_3:60081490-60081509 None:intergenic 35.0%
ATCTATACTAAGGATCCAAC+TGG + chr4_3:60081493-60081512 Msa0652360:CDS 35.0%
ACATGATTAGAGCTGCATTT+AGG - chr4_3:60081573-60081592 None:intergenic 35.0%
CTTCAAATCACATCGAGTGT+AGG - chr4_3:60078208-60078227 None:intergenic 40.0%
! AAAGCCATATGGCCCTATTT+TGG - chr4_3:60078328-60078347 None:intergenic 40.0%
CAGCTTGAAGAATCATAGAG+AGG - chr4_3:60078484-60078503 None:intergenic 40.0%
TCAAACTGAGCTTCAACGAA+GGG - chr4_3:60078508-60078527 None:intergenic 40.0%
ATCAAACTGAGCTTCAACGA+AGG - chr4_3:60078509-60078528 None:intergenic 40.0%
! TTTTTGTGGTGTAGGTTCAG+TGG + chr4_3:60078841-60078860 Msa0652360:intron 40.0%
GTCTTGTATGATTCATGCGT+CGG + chr4_3:60078945-60078964 Msa0652360:CDS 40.0%
TGGAAGAAGACAGTAGACAT+TGG - chr4_3:60079006-60079025 None:intergenic 40.0%
AATGTCTACTGTCTTCTTCC+AGG + chr4_3:60079005-60079024 Msa0652360:CDS 40.0%
TCTCGTTTGAGGGTGATAAT+AGG - chr4_3:60079914-60079933 None:intergenic 40.0%
TATTATCACCCTCAAACGAG+AGG + chr4_3:60079913-60079932 Msa0652360:intron 40.0%
! TGCAACAGTTTACAAGTTGG+AGG + chr4_3:60079951-60079970 Msa0652360:intron 40.0%
CATCAATCATGGGTATGCTT+TGG + chr4_3:60080015-60080034 Msa0652360:intron 40.0%
TGGTGTACGGTATAGTTGTA+TGG - chr4_3:60080651-60080670 None:intergenic 40.0%
ATACCGTACACCATATTTGG+TGG + chr4_3:60080658-60080677 Msa0652360:CDS 40.0%
ACATGTTGATCTTCAACTCC+TGG + chr4_3:60080756-60080775 Msa0652360:intron 40.0%
ATTCACACTGGAGATTTACG+AGG + chr4_3:60080788-60080807 Msa0652360:intron 40.0%
TTCACACTGGAGATTTACGA+GGG + chr4_3:60080789-60080808 Msa0652360:intron 40.0%
GAGGTGATTTGAGGAAACTA+CGG + chr4_3:60080876-60080895 Msa0652360:intron 40.0%
! AGGTGGGATTTTATCAGAGA+TGG + chr4_3:60081050-60081069 Msa0652360:intron 40.0%
TTCACTACATCATTTGCAGG+AGG - chr4_3:60081388-60081407 None:intergenic 40.0%
TGACTACAATCAATGCCAGT+TGG - chr4_3:60081511-60081530 None:intergenic 40.0%
!! CTGGCATTGATTGTAGTCAT+TGG + chr4_3:60081512-60081531 Msa0652360:CDS 40.0%
! AGGAGTATGTTCCAAGTATC+AGG - chr4_3:60081553-60081572 None:intergenic 40.0%
ACCACCAAAATAGGGCCATA+TGG + chr4_3:60078321-60078340 Msa0652360:exon 45.0%
TTGCTGGGTGCATGGATATA+AGG - chr4_3:60078399-60078418 None:intergenic 45.0%
TTATATCCATGCACCCAGCA+AGG + chr4_3:60078398-60078417 Msa0652360:CDS 45.0%
TATATCCATGCACCCAGCAA+GGG + chr4_3:60078399-60078418 Msa0652360:CDS 45.0%
! TTGACTTTTGTGCCCTTGCT+GGG - chr4_3:60078414-60078433 None:intergenic 45.0%
!! TTTGACTTTTGTGCCCTTGC+TGG - chr4_3:60078415-60078434 None:intergenic 45.0%
CTGGGTAAAGCACATGAATC+AGG - chr4_3:60078583-60078602 None:intergenic 45.0%
CTGATTCATGTGCTTTACCC+AGG + chr4_3:60078581-60078600 Msa0652360:CDS 45.0%
GTTGACATCCTCTCGTTTGA+GGG - chr4_3:60079924-60079943 None:intergenic 45.0%
ATATTGGGGATAGCAATGGC+CGG - chr4_3:60080479-60080498 None:intergenic 45.0%
AGATTGCATGCACAGGACTA+TGG + chr4_3:60080620-60080639 Msa0652360:intron 45.0%
ACGCTGGACTCTATAAAAGC+TGG + chr4_3:60080713-60080732 Msa0652360:CDS 45.0%
TGGTAAAGCATGGGTAGACA+TGG + chr4_3:60080733-60080752 Msa0652360:CDS 45.0%
!! TTTGGCTTGCTTCATTCAGG+TGG + chr4_3:60081033-60081052 Msa0652360:intron 45.0%
!! TTGGCTTGCTTCATTCAGGT+GGG + chr4_3:60081034-60081053 Msa0652360:intron 45.0%
TCCTTTCTCCTTGAATCCAG+AGG + chr4_3:60081283-60081302 Msa0652360:intron 45.0%
CCTTTCTCCTTGAATCCAGA+GGG + chr4_3:60081284-60081303 Msa0652360:intron 45.0%
GAACCGAAGAAGACATGTAG+CGG + chr4_3:60081319-60081338 Msa0652360:CDS 45.0%
AACCGAAGAAGACATGTAGC+GGG + chr4_3:60081320-60081339 Msa0652360:CDS 45.0%
ATCATTTGCAGGAGGTAGAG+GGG - chr4_3:60081380-60081399 None:intergenic 45.0%
CATCATTTGCAGGAGGTAGA+GGG - chr4_3:60081381-60081400 None:intergenic 45.0%
ACATCATTTGCAGGAGGTAG+AGG - chr4_3:60081382-60081401 None:intergenic 45.0%
AAGTATCAGGTAGTCCTGGT+AGG - chr4_3:60081540-60081559 None:intergenic 45.0%
TACCAGGACTACCTGATACT+TGG + chr4_3:60081539-60081558 Msa0652360:CDS 45.0%
TTCCAAGTATCAGGTAGTCC+TGG - chr4_3:60081544-60081563 None:intergenic 45.0%
!!! ATGTTTTAAATTTTTAAATA+AGG - chr4_3:60080256-60080275 None:intergenic 5.0%
!! AATTTAATTACTATATATAT+TGG + chr4_3:60081671-60081690 Msa0652360:three_prime_UTR 5.0%
!! GCCATATGGCCCTATTTTGG+TGG - chr4_3:60078325-60078344 None:intergenic 50.0%
GGTTGACATCCTCTCGTTTG+AGG - chr4_3:60079925-60079944 None:intergenic 50.0%
TGGCCGGATATCCACGAATA+TGG - chr4_3:60080463-60080482 None:intergenic 50.0%
CTTGGAGAGATTGCATGCAC+AGG + chr4_3:60080613-60080632 Msa0652360:intron 50.0%
! TGTTGGTAGAGTGCTTACGC+TGG + chr4_3:60080697-60080716 Msa0652360:CDS 50.0%
TGATCTTCAACTCCTGGCAC+TGG + chr4_3:60080762-60080781 Msa0652360:intron 50.0%
AGTGAAGGACATGGACCGTT+TGG + chr4_3:60081082-60081101 Msa0652360:CDS 50.0%
!! ATTGACCACTTGGGCTGGTT+GGG + chr4_3:60081121-60081140 Msa0652360:CDS 50.0%
CCCTCTGGATTCAAGGAGAA+AGG - chr4_3:60081287-60081306 None:intergenic 50.0%
AATCCTGCCCTCTGGATTCA+AGG - chr4_3:60081294-60081313 None:intergenic 50.0%
TTGAATCCAGAGGGCAGGAT+TGG + chr4_3:60081293-60081312 Msa0652360:intron 50.0%
TTCATTCCAATCCTGCCCTC+TGG - chr4_3:60081302-60081321 None:intergenic 50.0%
ACCGAAGAAGACATGTAGCG+GGG + chr4_3:60081321-60081340 Msa0652360:CDS 50.0%
TCCCCGCTACATGTCTTCTT+CGG - chr4_3:60081325-60081344 None:intergenic 50.0%
CGGGGAAGTTGAACCATTAC+CGG + chr4_3:60081339-60081358 Msa0652360:CDS 50.0%
GGGGAAGTTGAACCATTACC+GGG + chr4_3:60081340-60081359 Msa0652360:CDS 50.0%
GGATATGTGGTTCCCGGTAA+TGG - chr4_3:60081355-60081374 None:intergenic 50.0%
! TGTAGTCATTGGTGCCTACC+AGG + chr4_3:60081523-60081542 Msa0652360:CDS 50.0%
GTGGTGTAGGTTCAGTGGAG+AGG + chr4_3:60078846-60078865 Msa0652360:intron 55.0%
! TCTTCAACTCCTGGCACTGG+TGG + chr4_3:60080765-60080784 Msa0652360:intron 55.0%
AGTGTGAATCCACCAGTGCC+AGG - chr4_3:60080777-60080796 None:intergenic 55.0%
!! TGGCACTGGTGGATTCACAC+TGG + chr4_3:60080776-60080795 Msa0652360:intron 55.0%
AAGGGATTGACCACTTGGGC+TGG + chr4_3:60081116-60081135 Msa0652360:CDS 55.0%
!! GATTGACCACTTGGGCTGGT+TGG + chr4_3:60081120-60081139 Msa0652360:CDS 55.0%
ATCAACCCAACCAGCCCAAG+TGG - chr4_3:60081129-60081148 None:intergenic 55.0%
TCTCCTTGAATCCAGAGGGC+AGG + chr4_3:60081288-60081307 Msa0652360:intron 55.0%
AGGTAGAGGGGCAGGATATG+TGG - chr4_3:60081368-60081387 None:intergenic 55.0%
TTGTGCCCTTGCTGGGTGCA+TGG - chr4_3:60078407-60078426 None:intergenic 60.0%
GGGGCAGGATATGTGGTTCC+CGG - chr4_3:60081361-60081380 None:intergenic 60.0%
TTTGCAGGAGGTAGAGGGGC+AGG - chr4_3:60081376-60081395 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60078173 60081746 60078173 ID=Msa0652360;Name=Msa0652360
chr4_3 mRNA 60078173 60081746 60078173 ID=Msa0652360-mRNA-1;Parent=Msa0652360;Name=Msa0652360-mRNA-1;_AED=0.33;_eAED=0.33;_QI=167|0.8|0.83|1|0.8|0.66|6|127|336
chr4_3 exon 60078173 60078602 60078173 ID=Msa0652360-mRNA-1:exon:16276;Parent=Msa0652360-mRNA-1
chr4_3 exon 60078855 60079026 60078855 ID=Msa0652360-mRNA-1:exon:16277;Parent=Msa0652360-mRNA-1
chr4_3 exon 60080635 60080759 60080635 ID=Msa0652360-mRNA-1:exon:16278;Parent=Msa0652360-mRNA-1
chr4_3 exon 60081052 60081210 60081052 ID=Msa0652360-mRNA-1:exon:16279;Parent=Msa0652360-mRNA-1
chr4_3 exon 60081303 60081610 60081303 ID=Msa0652360-mRNA-1:exon:16280;Parent=Msa0652360-mRNA-1
chr4_3 exon 60081636 60081746 60081636 ID=Msa0652360-mRNA-1:exon:16281;Parent=Msa0652360-mRNA-1
chr4_3 five_prime_UTR 60078173 60078339 60078173 ID=Msa0652360-mRNA-1:five_prime_utr;Parent=Msa0652360-mRNA-1
chr4_3 CDS 60078340 60078602 60078340 ID=Msa0652360-mRNA-1:cds;Parent=Msa0652360-mRNA-1
chr4_3 CDS 60078855 60079026 60078855 ID=Msa0652360-mRNA-1:cds;Parent=Msa0652360-mRNA-1
chr4_3 CDS 60080635 60080759 60080635 ID=Msa0652360-mRNA-1:cds;Parent=Msa0652360-mRNA-1
chr4_3 CDS 60081052 60081210 60081052 ID=Msa0652360-mRNA-1:cds;Parent=Msa0652360-mRNA-1
chr4_3 CDS 60081303 60081594 60081303 ID=Msa0652360-mRNA-1:cds;Parent=Msa0652360-mRNA-1
chr4_3 three_prime_UTR 60081595 60081610 60081595 ID=Msa0652360-mRNA-1:three_prime_utr;Parent=Msa0652360-mRNA-1
chr4_3 three_prime_UTR 60081636 60081746 60081636 ID=Msa0652360-mRNA-1:three_prime_utr;Parent=Msa0652360-mRNA-1
Gene Sequence

>Msa0652360

ATGGCTTTCAATGTCCATACATTATTGTTTTTGCTCTCTCTGTTTAGCCTAAATCTCCTTATATCCATGCACCCAGCAAGGGCACAAAAGTCAAATAATTGTAATTTGTTCTTTGGAAGCTGGGTGATTGACTCTTCATATCCTCTCTATGATTCTTCAAGCTGTCCCTTCGTTGAAGCTCAGTTTGATTGCAAAAAATATGGAAGACCTGATAATCAGTATCTTAAATACTCTTGGAAGCCTGATTCATGTGCTTTACCCAGGTTCAGTGGAGAGGATTTTTTGAATAGGTGGAAGGATAAGAAGATAATGTTTGTAGGTGATTCATTGAGTCTAAACATGTGGGAATCATTGTCTTGTATGATTCATGCGTCGGTTCCTAATGTCACTACAAGCTTTTCTAGGAAAGAACCAATGTCTACTGTCTTCTTCCAGGACTATGGAGTAACCATACAACTATACCGTACACCATATTTGGTGGATATAATTCAAGAAGATGTTGGTAGAGTGCTTACGCTGGACTCTATAAAAGCTGGTAAAGCATGGGTAGACATGGACATGTGGGATTTTATCAGAGATGGTTCTAATCTAGTGAAGGACATGGACCGTTTGGATGCATTTTATAAGGGATTGACCACTTGGGCTGGTTGGGTTGATGCAAATGTTGACCCTACTAAAACTAAACTCTTCTTTCAAGGAATTTCCCCTACTCATAATAAAGGGCAGGATTGGAATGAACCGAAGAAGACATGTAGCGGGGAAGTTGAACCATTACCGGGAACCACATATCCTGCCCCTCTACCTCCTGCAAATGATGTAGTGAACAAAGTGTTAAAGAACATGAAGAAGCAGGTTTATCTACTTGACATAACACTTCTCTCACAACTAAGAAAAGATGCACATCCTTCTATCTATACTAAGGATCCAACTGGCATTGATTGTAGTCATTGGTGCCTACCAGGACTACCTGATACTTGGAACATACTCCTAAATGCAGCTCTAATCATGTGA
Protein sequence

>Msa0652360

MAFNVHTLLFLLSLFSLNLLISMHPARAQKSNNCNLFFGSWVIDSSYPLYDSSSCPFVEAQFDCKKYGRPDNQYLKYSWKPDSCALPRFSGEDFLNRWKDKKIMFVGDSLSLNMWESLSCMIHASVPNVTTSFSRKEPMSTVFFQDYGVTIQLYRTPYLVDIIQEDVGRVLTLDSIKAGKAWVDMDMWDFIRDGSNLVKDMDRLDAFYKGLTTWAGWVDANVDPTKTKLFFQGISPTHNKGQDWNEPKKTCSGEVEPLPGTTYPAPLPPANDVVNKVLKNMKKQVYLLDITLLSQLRKDAHPSIYTKDPTGIDCSHWCLPGLPDTWNILLNAALIM*